lowQualScore : 11111111111111111111
lowQualScore : 11 111 11 22222 222 1111 111111 22222222222222222222 22222222 1 1 1111 3333 333333333 111111 1111 33 22 111 222 1 33 2222222 4444444 666666666666666 11 1 333333 33 11 1 111 11 111 11 11 2222 44444444 11 1 11 11 1 1111 33333333 11
lowQualScore : 44 3 9999 5 222 6666 3 3 888 3 7777 44 3 22222 888888 55 6666 3 5555 555 000 555 3 3 7777 3 6 999 6 111111 55555555555555555555 6 3 44 77777777 2 0 8 2222 4444 4 4 4 333333333 666 111111 4 777 8888 555 5 66 5 5 8 7777 44 99 66 4 11 555 0 555 5 0 77 77 5 5 3 6 44 1111111 6 3 6666666 111111111111111 11 999 0 5 000000 00 11 0 1 33 88 999 33 6 6 6 3 6 6 111 1 9 5 99 6 8 8 5 99 11 8 0 8 0 8 8 0 8 8 3333 0 11111111 1 11 0 5 8 88 11 0 11 8 88 0 4444 00000000 3 33 3
lowQualScore : .. . .... . ... .... . . ... . .... .. . ..... ...... .. .... . .... ... ... ... . . .... . . ... . ...... .................... . . .. ........ . . . .... .... . . . ......... ... ...... . ... .... ... . .. . . . .... .. .. .. . .. ... . ... . . .. .. . . . . .. ....... . . ....... ............... .. ... . . ...... .. .. . . .. .. ... .. . . . . . . ... . . . .. . . . . .. .. . . . . . . . . . .... . ........ . .. . . . .. .. . .. . .. . .... ........ . .. .
lowQualScore : 77 3 3333 1 222 3333 3 3 222 7 1111 44 1 88888 888888 66 5555 1 5555 444 444 444 1 1 9999 1 8 666 2 999999 99999999999999999999 2 1 22 88888888 9 5 2 3333 8888 0 0 0 444444444 222 555555 0 000 9999 888 0 99 0 0 5 5555 88 66 99 5 66 777 1 666 7 7 99 99 7 7 3 7 88 7777777 7 8 8888888 888888888888888 44 888 0 6 222222 00 00 8 8 88 88 888 66 7 7 7 7 7 7 777 0 2 2 22 7 2 0 6 00 00 0 8 0 8 0 0 8 0 0 2222 8 22222222 4 00 6 2 0 88 00 8 22 0 88 0 8888 00000000 2 88 2
consensus : CCATTAACTT-CC-C--C-AATTAAGT--AAAAATCTG-C--ATT-ACC-GAATCA-CTNA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----A-T---AT---CT---ACAT---TCT-C-ACAN-C-GTTTCCCAA---CCA-T------TTTAACAA-AG-----GT----CAA-C-GAC--T-----G--C-TCTATCGAAATGACT-TAAG---GAAATCGC--GCAAAGCATTA-TCG-CGCTG-TGGT-ACAATA-CACAT-T-A------CATATCC-A---ACAGC---CCTCGCA--CGTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAAT--GCTG-ATGACGAGC--AGCTA--GATCTCCCAGACTTAGAAGGGAAT--GAATGGGAA-AGTT--GGTACA--GA-G-GG-ATTG-AATA--GAATGGACA-------AGTGG-TGCTATTGTGCCACAGGAACTTA-TATTGACATAGA-TCACTGGTTT-GTTATCTTTG-CCTTTACATACTGTGT-GCTT-CTGGTGATGGGCAGGGAAATGG-AACTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CAG-T-ACATTCATNAG-----TTTTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
Reference ( gi|1 ) : CCATTAACTT-TC-C--C-AATTAAGT--GAAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGTTAAC-TT-T---ATA------TAA-ACTTTA----A-T---AT---CT---ACAT---TCT-C-ACAG-C-GTTTCCTAA---CCA-T------TT--------------GT----CAA-C-GAC--T-----G--C-TCTATCGAAATGACT-TAAG---GAAATTGC-CACAAAGCATTA-TCG-CGCTG-TGGTTACAATAACACAT-T-A------CATATCC-A---ACAGC---CCTCGCA--TGTCG-TTT--AAACTATCA-GTTGTACATTT-GGTTTAAT--TCTGAATGACAAGCA-AGCTA--GATCTCCCAGACTTAGAAGGGAAG--GAATAGAAA-AGTT--GGTACA--GA-G-GG-ATTG-AATATTGAATGGACA-------AGTGG-TGCTATTGTGCCACAGGAACTTAATATTGACATATA-TCACTAGTTTCGTTATCTTTG-CTTTTACATACTGTGT-GCTTTCTGGTGATGATCAGGGAAATGA-AACTGATGAAGAAGGGAATGAA-GTGGATATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATAATCAT--G-ATCACCAT-CAGTTGAAG--CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA--T-ACATTCATTAG-----TTTTA--ATTTGAAATG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|3 : CCATTAACTT-CT-C--C-AATTAAGT---AAACTCTG----ATT-ACC-G--TCAGCTTA----GTTTT-TGGCAAC-TGGT---ATA------TGA-GTATTA----A-T---AT---C----ACTA---TCT-C-ACAG-CCGTTTCC-AAGC-CCA-TG-----TTCACAAGACAGTGTGGT----CAAAC-GAC--T-----GGCC-TCTATC-AAAT-ACT---AA---GAAATTG---ACAAAGCATTA-CGG-CG-TG-T------AATACCACATAT-A------CAGGTAC-AGTGACAACACGCCTCGCA--TGTCG-TTTTAAAACTATCA-GTTGTACATTT-GGCT-AAT--G-TGA-TGACGAGCACAGCTA--GAT-TCCCAGA-TTAGAAAG-AAT--GAATG--AA-ATTC--GGTACA--GA-G-GGGATTG-AATA--GAATGGACA-------AGTGGGTGC-ATTGTGCCACAGGA-CTTA---TTGACATAT---CACT-GTTT-GTTATCTTT---CTTTACATAC-GTGTCGCTT-CTGGTGATGG--AGAAAAATGG-AACTGATGA-GAAGGGA--GAA-GTG-ATATGAA-CAGTC-TGAT-CGA-TG-AA-TA-TT---T-ATAATCAT--GCATCACCAT-CAGTTGAAAGCCGCGTTAA--TGCT-CAT-AATTATGC-AAAA-TTGTTTAT-TTC-CA--A-ACATTCATAAAAAAATTTTTG--ATTTGAAACG-T-ATT--AC-ACTCAAAATTA-TGC-AAAATTGTTT--T-ATTTACA-A----G-AA-TG--ATA-TTACA
gi|2 : CCATTAACTTCTC-C--C-AATTAAGT--GAAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCTAAC-TT-TT--ATC------TAA-ACTTTA----A-T---AT---CT---GCAT---TCT-C-ACAG-C-GTTTCCTAA---CTA-T------TTTCACAACAGTG---GT----CAA-C-GAC--T-----GG-C-TCTATCGAAATGACT-TAAGTTTAAAATTt
gi|5 : CCATTAACTTCTC-C--C-AATTAAGT--AAAAATATG-C--ATT-CCC-CAATCA-CTTA----GTTTTATGCTAAA-TTCT---TTG------TAA-GTTTTA----A-T---AT---CT---ACAT---TCT-C-A-AT-T-CTTTCCCAATTTCCA-T------TTTAACAACAGTG---GT----CAA-C-GAC--T-----G--CCTCTATTGAAATGACatgtggaactaaaggctcatgtttattttatgaaaagatccatgaaatcgcacaaagcattatcgcgttgtggtacatccaacagcccgcgcacgtcgtttaaactatcagttgtacatttggcttaatgctgatgatttcccagacttagaaggaaatgaatggaaagttggtacagaggggattgaatatgaatggacaagtggtgctattgtgccacaggaacttattgacatagatcactgttagttatctttgcttatacatactatgtgcttctggtgatgagcagggaaatggaactgatgaagatggggatgaagtggaaatgaacagtctgatcgaaggaatatttgagatcatccgatcacatccagtgagcgcgttagactgcgcaaatttatgcaaattggtttgtgttacagtaacatcgattgaattaattgaatgtaattactactcaattatgcaga
gi|16 : CCATTAACTTCTC-C--C-AATTAAGT--AAAAATCTG-CGCATT-ACC-GA-TCAACTTA----GTTTTGT--CAAC-TT-TTATATA------TAA-AGCTTA----A-T---AT---CT---ACAT---TCT-C-ACAG-C-GTTTCCAAA---CCA-T------TTTCACAAAAA-----GTGGTCCAACC-GAC--TG----G--C-TCTATTGAAATGAaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccaaatcgtccaaagcattatcgcgctgtggtacaatacacattacttatcgaacagccctcgtacatcatataaactatcagtcgtacatttggcttcatactgatgacaatcagcaagatctcccagacttggaagggagtggatggaaagttggtgcattggggatttaatatgaacaaatggtgctattgtgtcacaggaacttattgacatactatatgcttctagtgatgagcaggggaatggaactgatgaagatggggatgaagtctgatcgatgaaatatttgatgatgatcatgatgatgacaatgatcattttattactggtt
gi|7 : CTATAAACTTCTC-T--C-AATGAAAT--GAAGATCTG-C--ATT-ACC-GAATTA-ATTACCACGTAGTGTGCTAAC-TT-TT--ATA------TAA-GCTCTA----A-T---AT---CT---ACAT---TCT-C-AATA-C-GTTTCCCAA---CCA-T------TTTAACAACAGTG---GT----AGA-C-GAC--TT----G--C-TCTATTGAAATGACTATAAGTTTAAAACTA--TACAAAATAT
gi|6 : CCATTAACGT-CT-T--C-AGTTAAGTAAAAAAATCTGAC--ATTAACCAGAATCA-CTGA----GCTTTATG-TAAC-TT-T----TAGGAGAGTAACGCTATATAATA-T---AT---CT----CAT---TTT-CAACAGAC-GTTTCTTAG---CCA-T------CT--------------TTA---CAA-C--AG--T-----G--G-TC-----AAACGACT-aaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattatgtcgtgtaaaatatcagtcatacatttggcttcatgctgacgacaagcagctaaatctcccagactttgaaggggtggatggaaacatggcacagagg
gi|9 : CATAAACTT-CC-C--CCAATTCAGT--AAAAATCTA-C--ATT-ACC-GAAT-----------G---------AAC-TTCT---ATA------TAA-GTTCTA----A-T---TT---CTTCAATAT---TCT-C-AACC-C-GTTTCCCAA---CCA-TCAGTGCTTACTGTG--------GT----CAA-C-GAC--TG----G--C-TCTAT--AA--GACTCTAAG---agacttttattgaatgtacttctatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatgaaatcgcacaagacattattgcgctgtggcacagtacacatgacgaatccaacagcctcgtaacggtcgttttaaatcatcactcgcacatttgggcttaatgctttggtgacaagcagctagggatctccagacttggaaggga
gi|10 : CATAAACTT-CCAC--T-AATTCAGT--AATGATATG-C--ATT-ACC-GAATTG-CCAA----CTTTTGTGCGAAC-TT-TC--ATA------TCT-GCTTTA----ATT---TT---CTCA-ATGT---TTT-T--TAGCC-GTTTCCAAA---CCAGT------TTTACAACAATA----AT----GAA-C-GAT--T-----GA-C-ACTACTGAAATGACTATAAG---tttaaaactatgtggagctgagggtgtgcgtttatataccattagaaagctattcaagagtatcatcatctacaaaatcgtacagtgttattgcactgtggtacaatacacattatatatacatatcaaacagccctcgtaca
gi|4 : TTAATTC-TC-C----AATT-AGT-----AATCTG----A-T-A-C-AAAT-A-CTTA----GTTTTGTGTCTAT-TTGT---ATA------TAG-ACTTTA----A-----AT---AT---TCAT---TT-----CAG-C-GTTT--TAA---TCA-T------TT--------------TA----CAA-CTGATGGTATGTGG--T-TCTAT-GAAATGACT-TA------GAATTG--CGCAG---ATTT-GCG-CGTGA-TGG-TA-AATAAAATTT-TAA------TATATCCAA---ACAG------TGGGG--CGTCG-TTT--GAACTA-CA-GTTGAATATGA-GAGTTGAG--TATG-GTGAGAAACA-AGATA--GTT----AGGATTTAGAAG---AGCTGATTGG--A-AGTTGGGGTA-A--GA-G-GG-ATTG-AATAT--GATGGACAGGGGATGAGTGG-T--TATTGTTGCA-AGGAAT----TATTGACATA-G-TCAT--GTTT-GTT-TCTTTG-C-CTTA-ATACTGTGT-GC-TTCTGGTGATGG-GAGGGAATGGA-AACTGATGAAGATGGGGATGAA-GTGGGAATGA---AGTC-TGATAGGA-TGGAA-T--TT---TGATGAT--T--G-AT----AT-CAGTTGAAG---GCGTTAA--TG-T-C-A-ATT--TGC-AAATATTGTTTGT-TTAGCA--T-AC-TTCAT--G-----TATTACTATTTGAAAAG-T--TC--AATACTC---ATTA-TGCGAAAAATG-TT--T-ATTTACAGA----G-ATTTA--TTATTTAtttaaaactatgtagagctgaaggcccgtgttactgaatagaacaattcaagagtatcgcccaatgcgtcatcgggctgtattacaatactaatgacatatacatcaaataaccctcgtaac
gi|12 : atTAAATG-TC-CTTC-AATTCAGT--GAAAATCTA-C--ATT-ATC-GATTGA-CCAA----GTTTTGTGCAAGT-TT-TC--ATA------TAA-GCTCTA----A-TTTCGT---CA---ATAT---TCTCC-AC-C-C-GTTTCCCAA---CCA-T------TTTTACAACAGTG---GC----CAA-A-GAC--TG----G--C-TCTATTGAAATGACTATAAG---a
gi|11 : cgAACTT--C-CAAC-AATTCAGT--AAAATTCTG-C--ATT-ACC-AAATGA-CCAA----GTTTTGTGCGAAC-TT-T---ATG------TAA-GCTCCA----A-T---TT---CTTCAATATTAATCT-A-AACC-C-TTTTCCCAA---ACA-T------TTTACAACAGTG----GT----CAA-T-GAC--TG----G--C-TCTATTGAAATGACTATAAG---ttaaaaactacatgtatgtgaagctgaagactcgtgtttataccgttggacatgtataagagtattatcatctacgaaatcgtgc
gi|18 : aCTC-CC-C--T-CATCCAGT--AAAAATCTG-C--ATT-ACC-AAATGA-CGAA----CTTTTATATAAGC---------TA------TAA-GCTCTA----A-T---TT---CTTCAATAT---TCT-C-AACC-C-GTTTCCCAG---CCA-T------TT--------------tttaaaactagttggacctgaagagctattcaagagtatcatcatccaagaaaccgtgcaaagcgttatcatgttgtggtacaatacacattacatatcgaacagcacttgtata
gi|19 : cccataaactcccccTTTGTGCAAACATT-T---GTA------TAA-GCTCTA----A-T---ATTGTCA---ACAA---TCT-C-AATT-C-GTTTGCCAA---CCATT------TT--------------GA----CAA-C--AG--T-----A----TCTATTGAAATAActacaa
gi|13 : tatattgacgagtgaccgatttttgT----CAA-C-GAC--T-----GG-C-TCTATCGAAATGAGT-TAAG----AAATTAC--GCAATGCATTA-TCG-CGCTG-TAGT-ACAATA-CACAT-T-A------CATATCC-A---ACAGC---CCTCGCA--TGTCG-TTT--AAATTATCA-GTTGTACATTT-GGATTAAT--GCTG-ATGACGAGC--AGCTA--GATCTCCCAGACTTAGAAGAGAAT--GAAT-GGAA-AGTT--GGTACA--AA-GAGG-ATTG-AATA-TGAATGGACA-------AGTGG-TGCTATTGTGCataaaaac
gi|2 : gtga-TTTAT-GAAAAGA-T-CCAT---GAAATCGC--ACAAAGCATTA-TCG-CGTTG-TGGT------------------------ACATCC-A---ACAGC---CCGCGCA--CGTCG-TTT--AAACTATCA-GTTGTACATTT-GGCTTAAT--GCTGA--------------T---GATTTCCCAGACTTAGAAGGAAAT--GAATGGAAA--GTT--GGTACA--GA-G-GGGATTG-AATAT-GAATGGACA-------AGTGG-TGCTATTGTGCCACAGGAACTTA---TTGACATAGA-TCACTG--TTAGTTATCTTTG-CTTATACATACTATGT-GCTT-CTGGTGATGAGCAGGGAAATGG-AACTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-AGGAA-TA-TT---TGA-GATCATCCG-ATCA-CATCCAGT--GAG--CGCGTTAGACTGCG-CAA-ATTTATGC-AAAT-TGGTTTGTGTTA-CAG-TAACATCGATT-G-----AATTA--ATT--GAATG-TAATT--ACTACTC--AATTA-TGC-AGA
gi|11 : ccattaacttctcccaattaagtgaaaatctgcattaccgaatcacttagttttgtgctaacttttatctaaactttaatatctgcattctcacagcgtttcctaactattttcacaacagtggtcaacgactggctctatcgaaatgacttaagtttaaaattatgtggaactaaaggctcatgtttatAA---GAAACCGT--GCAAAGCGTTA-TCA-TGTTG-TGGT-ACAATA-CACAT-T-A------CATATCG-A---ACAGC---ACTTGTA--T
gi|8 : aaacttccaacaattcagtaaaattctgcattaccaaatgaccaagttttgtgcgaactttatgtaagctccaatttcttcaatattaatctaaacccttttcccaaacattttacaacagtggtcaatgactggctctattgaaatgactataagtttaaaactagttggacctgaagagctattcaagagtatcatcatccG---AAAATCGCACAAAAAACATTAATCG-TGCTGATGGT-ACAATA-CACAT-G-A------CATATCC-A---ACAGC---CCTCTCA--CGTCG-TTT--AAACTATCATGTTGTGCATTT-GGCTTAAT--GCTG-ATGACGAGC--AGCTA---ATCTCCCAGACTTAGAAGAGAAT--GAAT-GGCA-AGTT--GGTACA--GAGG-GG-ATTGAAATA-TGAATGGAC--------AGTGG-TGCTATTGTGCCACAGGAGCCT--TA-TGACATAGATTCACTG--TTCGTTA-CTTTGCCCTTTACATACTGTa
gi|6 : atgtggagctgacaaggctcgtgtttattttgtttgaaagttaaaggcgtttcaagagtatcatcatccat---GAAATCGC--ACAAGACATTA-TTG-CGCTG-TGG-CACAGT-ACACAT-G-A------CGAATCC-A---ACAG----CCTCGTAACGGTCGTTTT--AAATCATCA-CTCGCACATTTGGGCTTAATGCTTTG-GTGACAAGC--AGCTAGGGATCT-CCAGACTTGGAAGGGA
gi|20 : ccattaacgtcttcagttaagtaaaaaaatctgacattaaccagaatcactgagctttatgtaacttttaggagagtaacgctatataatatatctcattttcaacagacgtttcttagccatctttacaacagtggtcaaacgactagacttttattgaatgtacttctatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactat---GAAATCGT--GCAAAGC-TTA-CCTTCGCTG-TGGT-ACAATA-CACGA-T-A------CATAT-C-G---ACAG
gi|5 : acAAATCGT-C-CAAAGCATTA-TCG-CGCTG-TGGT-ACAATA-CACAT-T-A------CTTATCG-A---ACAGC---CCTCGTA--CATCA-TAT--AAACTATCA-GTCGTACATTT-GGCTTCAT--ACTG-ATGACAATC--AGCAA--GATCTCCCAGACTTGGAAGGGAGT--GGAT-GGAA-AGTT--GGTGCATTG--G-GG-ATTT-AAT-----ATGAACA-------AATGG-TGCTATTGTGTCACAGGAACT---TATTGACAT------ACTA-------TA----TG-CTTCTA-------------------GTGATGAGCAGGGGAATGG-AACTGATGAAGATGGGGATGA---------------AGTC-TGAT-CGA-TGAAA-TA-TTTGATGATGATCAT--G-ATacattcgta
gi|9 : ccattaacttctcccaattaagtaaaaatatgcattccccaatcacttagttttatgctaaattctttgtaagttttaatatctacattctcaattctttcccaatttccattttaacaacagtggtcaacgactgcctctattgaaatgacaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccAGTGTTA-TTG-CACTG-TGGT-ACAATA-CACAT-T-ATATATACATATCA-A---ACAGC---CCTCGTA--gatgacaatgatcattttattactggtt
gi|7 : cataaacttcccccaattcagtaaaaatctacattaccgaatgaacttctatataagttctaatttcttcaatattctcaacccgtttcccaaccatcagtgcttactgtggtcaacgactggctctataagactctaagtttaaaactatgtggagctgagggtgtgcgtttatataccattagaaagctattcaagagtatcatcatctacaaaatcgtacA--TGTCG-TGT--AAAATATCA-GTCATACATTT-GGCTTCAT--GCTG-ACGACAAGC--AGCTA--AATCTCCCAGACTTTGAAGGGGTG--G-ATGGAAACA--T--GGCACA--GA-G-Gca
gi|14 : ctataaacttctctcaatgaaatgaagatctgcattaccgaattaattaccacgtagtgtgctaacttttatataagctctaatatctacattctcaatacgtttcccaaccattttaacaacagtggtagacgacttgctctattgaaatgactataagtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattAGGGAAATGGGAACTGATGAAAATGGGGATGAAAGTGGA-ATGAAACAGTCCTGAT-CGA-TGGGA-TA-TT---TAATGATTAT--G-ATCACTAT-CAGTGGAAG--CGCGTTAA--TGCT-CAA-ATTTATGCAAAAT-TTGTTTGT-TTA-CA--T-ACATTCATTAA-----TTTTA--ATTTGAAACG-T-ATTAAACTACTCAAAATTA-TGC-AAAATTG-TT--TAATTTACA-A----GAAATTGGAATATTTACA
gi|15 : caTC-TGAT-CGAGTGAAAATAATT---TGAT-----T--G-A-CATCAT-CAATTTAAGG-CGCATTAA--TGCTGCAATATTTACG--AAAT-TTGTT-GT-TTA-CAGGT-ACATTAATAAGG----TTTTA--ATT-GAAACGAT-ATT--GCTACTCAAAATTATTGC----ATTT-TTTAT-ATTTACT-GTCCTA-AATTG--ATATTTGCA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): AGTTGAAGGCTCGTGAATATACTGTTGAAAAGGTATTGGAATTCTAAAGTATCATCAACCATGGAATCTTGCAAAGCGTTATCATGCTGTAGTACGATGCACATTGTATATCGAAAAACCCTCGTA
Alignments
lowQualScore : 11111 111 1111 44444444444444444444 22222 1 1111111111 222 1 22 1111111 333 11 11 111 111 22 222222222 111 11 22222222 11
lowQualScore : 9 3 6 3 0 44 5555 3 3 5 6 2 6666 33 5 77777 888888 5 2 6666 555 555 555 6666 555 2 3333 2 0 555 2 2 77777 66666666666666666666 666 5 2 66666 8 2 5 444 44 1 3 3 3 3 3 77777 3333333333 555 3 555 33 4 4 66 4 0 4 66 4 4 66 666 0 0 000 66 66 5 5 1 5 55 8888888 5 333 3 88 99 8 11 8 0 8 8 00 6 6 3 6 2 66 99 5 5 5 5 5 000 1 3 77 5 5 6 888 99 6 6 6 6 6 6 44 666666666 111 99 6 6 99 7 6 6 8 11 8 00000000 0 11 0
lowQualScore : . . . . . .. .... . . . . . .... .. . ..... ...... . . .... ... ... ... .... ... . .... . . ... . . ..... .................... ... . . ..... . . . ... .. . . . . . . ..... .......... ... . ... .. . . .. . . . .. . . .. ... . . ... .. .. . . . . .. ....... . ... . .. .. . .. . . . . .. . . . . . .. .. . . . . . ... . . .. . . . ... .. . . . . . . .. ......... ... .. . . .. . . . . .. . ........ . .. .
lowQualScore : 2 1 2 1 2 22 0000 1 1 9 2 1 5555 44 7 77777 222222 7 2 1111 000 000 000 1111 000 9 7777 9 6 000 9 9 11111 22222222222222222222 444 3 7 11111 5 5 4 333 22 2 1 1 1 1 1 77777 8888888888 444 1 888 22 0 4 11 4 7 4 11 4 4 11 222 1 9 999 99 99 0 0 4 7 00 6666666 7 333 2 88 00 0 66 0 8 0 0 00 7 7 5 7 5 88 88 7 7 7 7 7 000 7 0 99 7 2 7 555 22 7 7 7 7 7 7 33 333333333 777 22 7 7 22 3 7 7 0 00 0 22222222 8 00 8
consensus : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---AAC-AA---N-------GGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATAT-GAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGAGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
Reference ( family-1063 ) : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTNA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---AAC-AA---A-------GGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CATTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA--GAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTT-ATATTGACATAGA-TCACTGGTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGGGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|1 : CCATTAACTTT-C-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGTTAAC-TT-T---ATA------TAA-ACTTTA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCTAA---CC-A-T-----TT----------------------GT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATTGCCACAAAG--CATTA-TCG-CGCTG-TGGTTACAATAAC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGTTTAATTC--TGAATGACAAGCAA--GCTA--GATCTCCCAGACTTAGAAGGGAAGGAATAGAAAAGTTGG--TACA--GA-G-GG-ATTG-AATATTGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTTAATATTGACATATA-TCACTAGTTTCGTTATCTTTG-CTTTTACATACTGTGT-GCTTTCTGGTGATGATCAGGGAAATGA-AA-CTGATGAAGAAGGGAATGAA-GTGGATATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATAATCAT--G-ATCACCAT-CAGTTGAA-G-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA--TACATTCATTA-G-----TT---TTA--ATTTGAAATG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|10 : CATAAACTTC-CAC-T-AATTCAGTA--ATGATATG-C--ATT-ACC-GAATTG-CCAA----CTTTTGTGCGAAC-TT-TC--ATA------TCT-GCTTTA----AT---TT---TC---TCAATGTT---TTTT-A-G-CC-GTTTCCAAA---CC-AGT-----TTTAC-AAC-AA---T-------AAT-G-AA-CGAT-T-GA--CACTACTGAAATG-ACTATAAG
gi|10 : AACA-ATT-CAAGAGTATCG-CCCAATG--CGTCA-TCG-GGCTG-TAT-TACAAT-ACTAATGACA-------T---ATACATCAA---A-TAAC---CCTCGT-Atttaaaactatgtagagctgaaggcccgtgttactgaatagaacaattcaagagtatcgcccaatgcgtcatcgggctgtattacaatactaatgacatatacatcaaataaccctcgtaac
gi|11 : cataaacttccactaattcagtaatgatatgcattaccgaattgccaacttttgtgcgaactttcatatctgctttaattttctcaatgttttttagccgtttccaaaccagttttacaacaataatgaacgattgacactactgaaatgactataagtttaaaactatgtagagctgaaggcccgtgttactgaatagAACTTC-C-AAC-AATTCAGTA--AAATTCTG-C--ATT-ACC-AAATGA-CCAA----GTTTTGTGCGAAC-TT-T---ATG------TAA-GCTCCA----AT---TT---CTTCAATA----TTAATCTA-AAC-CC-TTTTCCCAA---AC-A-T-----TTTAC-AAC-AG---T-------GGT-C-AA-TGAC-TGG---CTCTATTGAAATG-ACTATAAGac
gi|11 : aAAGAAACCG-TGCAAAG--CGTTA-TCA-TGTTG-TGG-TACAAT-AC-----ACAT------T---ACATATCGA---A-CAGC---ACTTGT-Atttaaaactagttggacctgaagagctattcaagagtatcatcatccaagaaaccgtgcaaagcgttatcatgttgtggtacaatacacattacatatcgaacagcacttgtata
gi|12 : aaacttccaacaattcagtaaaattctgcattaccaaatgaccaagttttgtgcgaactttatgtaagctccaatttcttcaatattaatctaaacccttttcccaaacattttacaacagtggtcaatgactggctctattgaaatgactataagtttaaaactagttggacctgaagagctattcaagagtatcatcatccTCC-T-T-C-AATTCAGTG--AAAATCTA-C--ATT-ATC-GATTGA-CCAA----GTTTTGTGCAAGT-TT-TC--ATA------TAA-GCTCTA----ATTTCGT---CA---ATA----T---TCTC--CACCC-GTTTCCCAA---CC-A-T-----TTTTACAAC-AG---T-------GGC-C-AA-AGAC-TGG---CTCTATTGAAATG-ACTATAAGta
gi|13 : cgtaaatg-------GAT-C-AA-CGAC-T-GG--CTCTATCGAAATG-AGT-TAAG-AAATTA-CGCAATG--CATTA-TCG-CGCTG-TAG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAATTATCA-GTTGTACATTT-GGATTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGAGAATGAAT-GGAAAGTTGG--TACA--AA-GAGG-ATTG-AATAT-GAATGGACA-------AGT-GGTGCTATTGTGCttaaaaactacatgtatgtgaagctgaagactcgtgtttataccgttggacatgtataagagtattatcatctacgaaatcgtgc
gi|14 : gtAGGGAAATGGGAA-CTGATGAAAATGGGGATGAAAGTGGAA-TGAAACAGTCCTGAT-CGA-TGGGA-TA-TT---TAATGATTAT--G-ATCACTAT-CAGTGGAAG--CGCGTTAA--TGCT-CAA-ATTTATGCAAAAT-TTGTTTGT-TTA-CA--TACATTCATTA-A-----TT---TTA--ATTTGAAACG-T-ATTAAACTACTCAAAATTA-TGC-AAAATTG-TT--TAATTTACA-A----GAAATTGGAATATTTACA
gi|15 : caTC-TGAT-CGAGTGAAAATAATT---TGAT-----T--G-A-CATCAT-CAATTTAAGG-CGCATTAA--TGCTGCAATATTTACG--AAAT-TTGTT-GT-TTA-CAGGTACATTAATAAGG-----TT---TTA--A-TTGAAACGAT-ATT--GCTACTCAAAATTATTGC----ATTT-TTTAT-ATTTACT-GTCCTA-AATTG--ATATTTGCA
gi|16 : CCATTAACTTCTC-C-C-AATTAAGTA--AAAATCTG-CGCATT-ACC-GA-TCAACTTA----GTTTTGT--CAAC-TT-TTATATA------TAAAGCT-TA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCAAA---CC-A-T-----TTT---CAC-AA---AAAGT---GGTCC-AACCGAC-TGG---CTCTATTGAAATG-A
gi|17 : GGAATCT-TGCAAAG--CGTTA-TCA-TGCTG-TAG-TACGAT-GC-----ACAT------T---GTATATCGA---A-AAAC---CCTCGT-A
gi|18 : agttgaaggctcgtgaatatactgttgaaaaggtattggaattctaaagtatcatcaaccatCTCC-C-C-T-CATCCAGTA--AAAATCTG-C--ATT-ACC-AAATGA-CGAA----CTTTTATATAAGC---------TA------TAA-GCTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAG---CC-A-T-----TTC---TAC-AA---
gi|19 : cccataaactcccccTTTGTGCAAACATT-T---GTA------TAA-GCTCTA----AT---ATTGTCA---ACA----A---TCTC-AAT-TC-GTTTGCCAA---CC-A-T-----TTT---GAC-AA---C-------AGT---A--------------TCTATTGAAATA-A
gi|2 : tatattgacgagtgaccgatttttgCCATTAACTTCTC-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCTAACTTT-T---ATC------TAA-ACTTTA----AT---AT---CT---GCA----T---TCTC-ACA-GC-GTTTCCTAA---CT-A-T-----TTTCACAAC-AG---T-------GGT-C-AA-CGAC-TGG---CTCTATCGAAATG-ACT-TAAGataaaaac
gi|2 : ---AACTAA---A-------GGC-T-CA-TGTT-T-A---TTTTAT-GAAAAG-A-T-CCATGAAATCG-CACAAAG--CATTA-TCG-CGTTG-TGG-TACA-----------------------------TCCA---A-CAGC---CCGCGC-AC-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGCTTAATGC--TG-ATGA-----------------TTTCCCAGACTTAGAAGGAAATGAATGG-AAAGTTGG--TACA--GA-G-GGGATTG-AATAT-GAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTT-AT--TGACATAGA-TCACTG-TTA-GTTATCTTTG-CTTATACATACTATGT-GC-TTCTGGTGATGAGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-AGGAA-TA-TT---TGA-GATCATCCG-ATCA-CATCCAG-TGA--G-CGCGTTAGACTGCG-CAA-ATTTATGC-AAAT-TGGTTTGTGTTA-CA-GTA-A--CATCG-A-----TTGAATTA--ATT--GAATG-TAATT--ACTACTC--AATTA-TGC-AGAtttaaaattatgtggaactaaaggctcatgtttattttatgaaaagatccatgaaatcgcacaaagcattatcgcgttgtggtacatccaacagcccgcgcacgtcgtttaaactatcagttgtacatttggcttaatgctgatgatttcccagacttagaaggaaatgaatggaaagttggtacagaggggattgaatatgaatggacaagtggtgctattgtgccacaggaacttattgacatagatcactgttagttatctttgcttatacatactatgtgcttctggtgatgagcagggaaatggaactgatgaagatggggatgaagtggaaatgaacagtctgatcgaaggaatatttgagatcatccgatcacatccagtgagcgcgttagactgcgcaaatttatgcaaattggtttgtgttacagtaacatcgattgaattaattgaatgtaattactactcaattatgcaga
gi|20 : ccattaacttctcccaattaagtgaaaatctgcattaccgaatcacttagttttgtgctaacttttatctaaactttaatatctgcattctcacagcgtttcctaactattttcacaacagtggtcaacgactggctctatcgaaatgacttaagtttaaaattatgtggGAAATCG-TGCAAAG--C-TTA-CCTTCGCTG-TGG-TACAAT-AC-----ACGA------T---ACATAT-CG---A-CAG
gi|3 : acCCATTAACTTC-T-C-C-AATTAAGTA--AAC-TCTG----ATT-ACC-G--TCAGCTTA----GTTTT-TGGCAAC-TGGT---ATA------TGA-GTATTA----AT---AT---C----ACT----A---TCTC-ACA-GCCGTTTCCAAG---CCCA-T-----GTT---CAC-AA---GACAGTGTGGT-C-AAACGAC-T-GGC-CTCTATC-AAAT--ACT---AAGAAATTG--ACAAAG--CATTA-CGG-CG-TG-TAA-TAC-----C-----ACATA-----T---ACAGGTACAGTGA-CAACACGCCTCGC-AT-GTCG-TTTTAAAACTATCA-GTTGTACATTT-GGCT-AATG---TG-ATGACGAGC-ACAGCTA--GAT-TCCCAGA-TTAGAAAG-AATGAATG--AAATTCGG--TACA--GA-G-GGGATTG-AATA--GAATGGACA-------AGTGGGTGC-ATTGTGCCACAGG-ACT---TATTGACAT--A-TCACT-GTTT-GTTATCTTT---CTTTACATAC-GTGTCGC-TTCTGGTGATGG--AGAAAAATGG-AA-CTGATGAGAA--GGGA-GAA-GT-GATATGAA-CAGTC-TGAT-CGA-T-GAA-TA-TT---T-ATAATCAT--GCATCACCAT-CAGTTGAAAGCCGCGTTAA--TGCT-CAT-AATTATGC-AAAA-TTGTTTAT-TTC-CA-A-ACATTCATAA-AAAAATTT---TTG--ATTTGAAACG-T-ATT--AC-ACTCAAAATTA-TGC-AAAATTGTTT--T-ATTTACA-A----G-AA-TG--ATA-TTACAacattcgta
gi|4 : TTAA-TTC-T-C-C-AATTA-GTA--A---TCTG----AT--AC--AAAT-A-CTTA----GTTTTGTGTCTAT-TTGT---ATA------TAG-ACTTTA----A----AT---AT---TCA----T---TT----CA-GC-GTTTT--AA---TC-A-T-----TTT---A-C-AACTGAT------GGT----A-TG---T-GG--TTCTAT-GAAATG-ACT-TAG---AATTG-CGCAGA-----TTT-GCG-CGTGA-TGG-TA-AAT-AA-----A-AT------TTTAATATATCCA---AACAG------TGGG-GC-GTCG-TTT--GAACTA-CA-GTTGAATATGA-GAGTTGA-GT-----ATGGTGAGA-A--ACAA--GATAGTTAGGATTTAGAAGAGC-TGATTGG--AAGTTGGGGTA-A--GA-G-GG-ATTG-AATA--TGATGGACAGGGGATGAGT-GGT--TATTGTTGCA-AGGAATT----ATTGACATAG--TCAT--GTTT-GTT-TCTTTG-CCTT-A-ATACTGTGT-GC-TTCTGGTGATGGG-AGGGAA-TGG-AAACTGATGAAGATGGGGATGAA-GTGGGAATGA---AGTC-TGATAGGA-TGGAA-T--TT---TGATGAT--T--G-AT----AT-CAGTTGAAG---GCGTTAA--TG-T-C-A-ATT--TGC-AAATATTGTTTGT-TTAGCA--TAC-TTCAT---G-----TA---TTACTATTTGAAAAG-T--TC--AATACTC---ATTA-TGCGAAAAATG-TT--T-ATTTACAGA----G-ATTTA--TTATTTAt
gi|5 : atCCATTAACTTCTC-C-C-AATTAAGTA--AAAATATG-C--ATT-CCC-CAATCA-CTTA----GTTTTATGCTAAA-TTCT---TTG------TAA-GTTTTA----AT---AT---CT---ACA----T---TCTC-A-A-TT-CTTTCCCAATTTCC-A-T-----TTT---AAC-AAC--AGT-----GGT-C-AA-CGAC-T-GC--CTCTATTGAAATG-ACa
gi|5 : AAATCG-TCCAAAG--CATTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACTTATCGA---A-CAGC---CCTCGT-AC-ATCA-TAT--AAACTATCA-GTCGTACATTT-GGCTTCATAC--TG-ATGACAATC-A--GCAA--GATCTCCCAGACTTGGAAGGGAGTGGAT-GGAAAGTTGG--TGCATTG--G-GG-ATTT-AAT-----ATGAACA-------AAT-GGTGCTATTGTGTCACAGGAACT---TATTGACATAaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccaaatcgtccaaagcattatcgcgctgtggtacaatacacattacttatcgaacagccctcgtacatcatataaactatcagtcgtacatttggcttcatactgatgacaatcagcaagatctcccagacttggaagggagtggatggaaagttggtgcattggggatttaatatgaacaaatggtgctattgtgtcacaggaacttattgacatactatatgcttctagtgatgagcaggggaatggaactgatgaagatggggatgaagtctgatcgatgaaatatttgatgatgatcatgatgatgacaatgatcattttattactggtt
gi|5 : ccattaacttctcccaattaagtaaaaatatgcattccccaatcacttagttttatgctaaattctttgtaagttttaatatctacattctcaattctttcccaatttccattttaacaacagtggtcaacgactgcctctattgaaatgacaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccACATACTATAT-GC-TTCTAGTGATGAGCAGGGGAATGG-AA-CTGATGAAGATGGGGATGA---------------AGTC-TGAT-CGA-TGAAA-TA-TTTGATGATGATCAT--G-ATctatatgcttctagtgatgagcaggggaatggaactgatgaagatggggatgaagtctgatcgatgaaatatttgatgatgatcatgatgatgacaatgatcattttattactggtt
gi|6 : ccattaacttctcccaattaagtaaaaatatgcattccccaatcacttagttttatgctaaattctttgtaagttttaatatctacattctcaattctttcccaatttccattttaacaacagtggtcaacgactgcctctattgaaatgacaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccaaatcgtccaaagcattatcgcgctgtggtacaatacacattacttatcgaacagccctcgtacatcatataaactatcagtcgtacatttggcttcatactgatgacaatcagcaagatctcccagacttggaagggagtggatggaaagttggtgcattggggatttaatatgaacaaatggtgctattgtgtcacaggaacttattgCCATTAACGTC-T-T-C-AGTTAAGTAAAAAAATCTGAC--ATTAACCAGAATCA-CTGA----GCTTTATG-TAAC-TT-T----TAGGAGAGTAACGCTATATAATAT---AT---CT----CA----T---TTTCAACAGAC-GTTTCTTAG---CC-A-T-----CTTTACAAC-AG---T-------GGT-CAAA-CGAC-T-AGACTTTTATTG-AATGTACT-Tgatgacaatgatcattttattactggtt
gi|6 : GAAATCG-CACAAGA--CATTA-TTG-CGCTG-TGG-CACAGT-AC-----ACAT------G---ACGAATCCA---A-CAG----CCTCGTAACGGTCGTTTT--AAATCATCA-CTCGCACATTTGGGCTTAATGCTTTG-GTGACAAGC-A--GCTAGGGATCT-CCAGACTTGGAAGGGActatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatgaaatcgcacaagacattattgcgctgtggcacagtacacatgacgaatccaacagcctcgtaacggtcgttttaaatcatcactcgcacatttgggcttaatgctttggtgacaagcagctagggatctccagacttggaaggga
gi|7 : ccattaacgtcttcagttaagtaaaaaaatctgacattaaccagaatcactgagctttatgtaacttttaggagagtaacgctatataatatatctcattttcaacagacgtttcttagccatctttacaacagtggtcaaacgactagacttttattgaatgtacttctatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatCTATAAACTTC-T-CTC-AATGAAATG--AAGATCTG-C--ATT-ACC-GAATTA-ATTACCACGTAGTGTGCTAAC-TT-TT--ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-AAT-AC-GTTTCCCAA---CC-A-T-----TTT---AAC-AAC--AGT-----GGT-A-GA-CGACTT-G---CTCTATTGAAATG-ACTATAAG
gi|7 : -AT-GTCG-TGT--AAAATATCA-GTCATACATTT-GGCTTCATGC--TG-ACGACAAGC-A--GCTA--AATCTCCCAGACTTTGAAGGG-GTGGAT-GGAAACATGG--CACA--GA-G-Gtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattatgtcgtgtaaaatatcagtcatacatttggcttcatgctgacgacaagcagctaaatctcccagactttgaaggggtggatggaaacatggcacagagg
gi|8 : ctataaacttctctcaatgaaatgaagatctgcattaccgaattaattaccacgtagtgtgctaacttttatataagctctaatatctacattctcaatacgtttcccaaccattttaacaacagtggtagacgacttgctctattgaaatgactataagtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattGAAAATCG-CACAAAAAACATTAATCG-TGCTGATGG-TACAAT-AC-----ACAT------G---ACATATCCA---A-CAGC---CCTCTC-AC-GTCG-TTT--AAACTATCATGTTGTGCATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA---ATCTCCCAGACTTAGAAGAGAATGAAT-GGCAAGTTGG--TACA--GAGG-GG-ATTGAAATAT-GAATGGAC--------AGT-GGTGCTATTGTGCCACAGGAGCCT--TA-TGACATAGATTCACT-GTTC-GTTA-CTTTGCCCTTTACATACTGT
gi|9 : atgtggagctgacaaggctcgtgtttattttgtttgaaagttaaaggcgtttcaagagtatcatcatccatCATAAACTTC-C-C-CCAATTCAGTA--AAAATCTA-C--ATT-ACC-GAAT--------------------GAAC-TTCT---ATA------TAA-GTTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAA---CC-A-TCAGTGCTT----AC-TG---T-------GGT-C-AA-CGAC-TGG---CTCTAT--AA--G-ACTCTAAG
gi|9 : AAATCG-TACA--G--TGTTA-TTG-CACTG-TGG-TACAAT-AC-----ACATTATATAT---ACATATCAA---A-CAGC---CCTCGT-AC-tttaaaactatgtggagctgagggtgtgcgtttatataccattagaaagctattcaagagtatcatcatctacaaaatcgtacagtgttattgcactgtggtacaatacacattatatatacatatcaaacagccctcgtaca
Alignments
lowQualScore : 11111 111 1111 33333333333333333333333 22222 1 1111111111 222 1 1111111 111111 1111 111 111 111 22 222222222 111 11 22222222 11
lowQualScore : 9 3 6 3 0 44 5555 3 3 5 6 2 6666 33 5 77777 888888 5 2 6666 555 555 555 6666 555 2 3333 2 0 555 2 2 77777 77777777777777777777777 666 5 2 77777 8 2 5 444 44 4 3 3 3 3 3 77777 3333333333 555 3 555 33 4 4 66 4 0 4 66 4 4 66 666 0 0 000 66 66 0 5 5 5 5 5 8888888 5 222222 9999 6 88 7 6 6 3 8 8 0 111 6 6 3 6 2 66 99 5 5 5 5 5 000 1 3 77 5 5 6 888 99 6 6 6 6 6 6 44 666666666 111 99 6 6 99 7 6 6 8 11 8 00000000 0 11 0
lowQualScore : . . . . . .. .... . . . . . .... .. . ..... ...... . . .... ... ... ... .... ... . .... . . ... . . ..... ....................... ... . . ..... . . . ... .. . . . . . . ..... .......... ... . ... .. . . .. . . . .. . . .. ... . . ... .. .. . . . . . . ....... . ...... .... . .. . . . . . . . ... . . . . . .. .. . . . . . ... . . .. . . . ... .. . . . . . . .. ......... ... .. . . .. . . . . .. . ........ . .. .
lowQualScore : 2 1 2 1 2 22 0000 1 1 9 2 7 5555 44 7 77777 222222 7 2 1111 000 000 000 1111 000 9 7777 9 6 000 9 9 11111 99999999999999999999999 444 7 9 66666 5 5 4 333 22 4 1 1 1 1 1 77777 8888888888 444 1 888 22 0 4 11 4 7 4 11 4 4 11 222 1 9 999 99 99 0 0 7 7 7 0 6666666 7 555555 7777 7 55 3 7 7 2 0 0 8 888 7 7 5 7 5 88 88 7 7 7 7 7 000 7 0 99 7 2 7 555 22 7 7 7 7 7 7 33 333333333 777 22 7 7 22 3 7 7 0 00 0 22222222 8 00 8
consensus : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AA----T-------GGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACCT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGGGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
Reference ( family-1063 ) : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AA----N-------GGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGAGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|1 : CCATTAACTTT-C-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGTTAAC-TT-T---ATA------TAA-ACTTTA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCTAA---CC-A-T-----TT-------------------------GT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATTGCCACAAAG--CATTA-TCG-CGCTG-TGGTTACAATAAC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGTTTAATTC--TGAATGACAAGCAA--GCTA--GATCTCCCAGACTTAGAAGGGAAGGAATAGAAAAGTTGG--TACA--GA-G-GG-ATTG-AATATTGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTTAATATTGACATATA-TCACTAGTTTCGTTATCTTTG-CTTTTACATACTGTGT-GCTTTCTGGTGATGATCAGGGAAATGA-AA-CTGATGAAGAAGGGAATGAA-GTGGATATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATAATCAT--G-ATCACCAT-CAGTTGAA-G-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA--TACATTCATTA-G-----TT---TTA--ATTTGAAATG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|10 : CATAAACTTC-CAC-T-AATTCAGTA--ATGATATG-C--ATT-ACC-GAATTG-CCAA----CTTTTGTGCGAAC-TT-TC--ATA------TCT-GCTTTA----AT---TT---TC---TCAATGTT---TTTT-A-G-CC-GTTTCCAAA---CC-AGT-----TTTAC-A--AC-AA----T-------AAT-G-AA-CGAT-T-GA--CACTACTGAAATG-ACTATAAG
gi|10 : AACA-ATT-CAAGAGTATCG-CCCAATG--CGTCA-TCG-GGCTG-TAT-TACAAT-ACTAATGACA-------T---ATACATCAA---A-TAAC---CCTCGT-Atttaaaactatgtagagctgaaggcccgtgttactgaatagaacaattcaagagtatcgcccaatgcgtcatcgggctgtattacaatactaatgacatatacatcaaataaccctcgtaac
gi|11 : cataaacttccactaattcagtaatgatatgcattaccgaattgccaacttttgtgcgaactttcatatctgctttaattttctcaatgttttttagccgtttccaaaccagttttacaacaataatgaacgattgacactactgaaatgactataagtttaaaactatgtagagctgaaggcccgtgttactgaatagAACTTC-C-AAC-AATTCAGTA--AAATTCTG-C--ATT-ACC-AAATGA-CCAA----GTTTTGTGCGAAC-TT-T---ATG------TAA-GCTCCA----AT---TT---CTTCAATA----TTAATCTA-AAC-CC-TTTTCCCAA---AC-A-T-----TTTAC-A--AC-AG----T-------GGT-C-AA-TGAC-TGG---CTCTATTGAAATG-ACTATAAGac
gi|11 : aAAGAAACCG-TGCAAAG--CGTTA-TCA-TGTTG-TGG-TACAAT-AC-----ACAT------T---ACATATCGA---A-CAGC---ACTTGT-Atttaaaactagttggacctgaagagctattcaagagtatcatcatccaagaaaccgtgcaaagcgttatcatgttgtggtacaatacacattacatatcgaacagcacttgtata
gi|12 : aaacttccaacaattcagtaaaattctgcattaccaaatgaccaagttttgtgcgaactttatgtaagctccaatttcttcaatattaatctaaacccttttcccaaacattttacaacagtggtcaatgactggctctattgaaatgactataagtttaaaactagttggacctgaagagctattcaagagtatcatcatccTCC-T-T-C-AATTCAGTG--AAAATCTA-C--ATT-ATC-GATTGA-CCAA----GTTTTGTGCAAGT-TT-TC--ATA------TAA-GCTCTA----ATTTCGT---CA---ATA----T---TCTC--CACCC-GTTTCCCAA---CC-A-T-----TTTTACA--AC-AG----T-------GGC-C-AA-AGAC-TGG---CTCTATTGAAATG-ACTATAAGta
gi|13 : cgtaaatg-------GAT-C-AA-CGAC-T-GG--CTCTATCGAAATG-AGT-TAAG-AAATTA-CGCAATG--CATTA-TCG-CGCTG-TAG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAATTATCA-GTTGTACATTT-GGATTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGAGAATGAAT-GGAAAGTTGG--TACA--AA-GAGG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCttaaaaactacatgtatgtgaagctgaagactcgtgtttataccgttggacatgtataagagtattatcatctacgaaatcgtgc
gi|14 : gtAGGGAAATGGGAA-CTGATGAAAATGGGGATGAAAGTGGAA-TGAAACAGTCCTGAT-CGA-TGGGA-TA-TT---TAATGATTAT--G-ATCACTAT-CAGTGGAAG--CGCGTTAA--TGCT-CAA-ATTTATGCAAAAT-TTGTTTGT-TTA-CA--TACATTCATTA-A-----TT---TTA--ATTTGAAACG-T-ATTAAACTACTCAAAATTA-TGC-AAAATTG-TT--TAATTTACA-A----GAAATTGGAATATTTACA
gi|15 : caTC-TGAT-CGAGTGAAAATAATT---TGAT-----T--G-A-CATCAT-CAATTTAAGG-CGCATTAA--TGCTGCAATATTTACG--AAAT-TTGTT-GT-TTA-CAGGTACATTAATAAGG-----TT---TTA--A-TTGAAACGAT-ATT--GCTACTCAAAATTATTGC----ATTT-TTTAT-ATTTACT-GTCCTA-AATTG--ATATTTGCA
gi|16 : CCATTAACTTCTC-C-C-AATTAAGTA--AAAATCTG-CGCATT-ACC-GA-TCAACTTA----GTTTTGT--CAAC-TT-TTATATA------TAAAGCT-TA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCAAA---CC-A-T-----TTT---C--AC-AAAAAGT-------GGTCC-AACCGAC-TGG---CTCTATTGAAATG-A
gi|17 : GGAATCT-TGCAAAG--CGTTA-TCA-TGCTG-TAG-TACGAT-GC-----ACAT------T---GTATATCGA---A-AAAC---CCTCGT-A
gi|18 : agttgaaggctcgtgaatatactgttgaaaaggtattggaattctaaagtatcatcaaccatCTCC-C-C-T-CATCCAGTA--AAAATCTG-C--ATT-ACC-AAATGA-CGAA----CTTTTATATAAGC---------TA------TAA-GCTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAG---CC-A-T-----TTC---T--AC-AA----
gi|19 : cccataaactcccccTTTGTGCAAACATT-T---GTA------TAA-GCTCTA----AT---ATTGTCA---ACA----A---TCTC-AAT-TC-GTTTGCCAA---CC-A-T-----TTT---G--AC-AA----C-------AGT---A--------------TCTATTGAAATA-A
gi|2 : tatattgacgagtgaccgatttttgCCATTAACTTCTC-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCTAACTTT-T---ATC------TAA-ACTTTA----AT---AT---CT---GCA----T---TCTC-ACA-GC-GTTTCCTAA---CT-A-T-----TTTCACA--AC-AG----T-------GGT-C-AA-CGAC-TGG---CTCTATCGAAATG-ACT-TAAGataaaaac
gi|2 : TTTAT-GAAAAG-A-T-CCATGAAATCG-CACAAAG--CATTA-TCG-CGTTG-TGG-TACA-----------------------------TCCA---A-CAGC---CCGCGC-AC-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGCTTAATGC--TG-ATGA-----------------TTTCCCAGACTTAGAAGGAAATGAATGG-AAAGTTGG--TACA--GA-G-GGGATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTT---ATTGACATAGA-TCACT-GTTA-GTTATCTTTG-CTTATACATACTATGT-GC-TTCTGGTGATGAGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-AGGAA-TA-TT---TGA-GATCATCCG-ATCA-CATCCAG-TGA--G-CGCGTTAGACTGCG-CAA-ATTTATGC-AAAT-TGGTTTGTGTTA-CA-GTA-A--CATCG-A-----TTGAATTA--ATT--GAATG-TAATT--ACTACTC--AATTA-TGC-AGAtttaaaattatgtggaactaaaggctcatgtttattttatgaaaagatccatgaaatcgcacaaagcattatcgcgttgtggtacatccaacagcccgcgcacgtcgtttaaactatcagttgtacatttggcttaatgctgatgatttcccagacttagaaggaaatgaatggaaagttggtacagaggggattgaatatgaatggacaagtggtgctattgtgccacaggaacttattgacatagatcactgttagttatctttgcttatacatactatgtgcttctggtgatgagcagggaaatggaactgatgaagatggggatgaagtggaaatgaacagtctgatcgaaggaatatttgagatcatccgatcacatccagtgagcgcgttagactgcgcaaatttatgcaaattggtttgtgttacagtaacatcgattgaattaattgaatgtaattactactcaattatgcaga
gi|20 : ccattaacttctcccaattaagtgaaaatctgcattaccgaatcacttagttttgtgctaacttttatctaaactttaatatctgcattctcacagcgtttcctaactattttcacaacagtggtcaacgactggctctatcgaaatgacttaagtttaaaattatgtggaactaaaggctcatgtttatGAAATCG-TGCAAAG--C-TTA-CCTTCGCTG-TGG-TACAAT-AC-----ACGA------T---ACATAT-CG---A-CAG
gi|3 : acCCATTAACTTC-T-C-C-AATTAAGTA--AAC-TCTG----ATT-ACC-G--TCAGCTTA----GTTTT-TGGCAAC-TGGT---ATA------TGA-GTATTA----AT---AT---C----ACT----A---TCTC-ACA-GCCGTTTCCAAG---CCCA-T-----GTT---C--AC-AA----GACAGTGTGGT-C-AAACGAC-T-GGC-CTCTATC-AAAT--ACT---AAGAAATTG--ACAAAG--CATTA-CGG-CG-TG-TAA-TAC-----C-----ACATA-----T---ACAGGTACAGTGA-CAACACGCCTCGC-AT-GTCG-TTTTAAAACTATCA-GTTGTACATTT-GGCT-AATG---TG-ATGACGAGC-ACAGCTA--GAT-TCCCAGA-TTAGAAAG-AATGAATG--AAATTCGG--TACA--GAGG-GG-ATTG-AATA--GAATGGACA-------AGTGGGTGC-ATTGTGCCACAGGA--CT--TATTGACAT--A-TCACT-GTTT-GTTATCTTT---CTTTACATAC-GTGTCGC-TTCTGGTGATGG--AGAAAAATGG-AA-CTGATGAGAA--GGGA-GAA-GT-GATATGAA-CAGTC-TGAT-CGA-T-GAA-TA-TT---T-ATAATCAT--GCATCACCAT-CAGTTGAAAGCCGCGTTAA--TGCT-CAT-AATTATGC-AAAA-TTGTTTAT-TTC-CA-A-ACATTCATAA-AAAAATTT---TTG--ATTTGAAACG-T-ATT--AC-ACTCAAAATTA-TGC-AAAATTGTTT--T-ATTTACA-A----G-AA-TG--ATA-TTACAacattcgta
gi|4 : TTAA-TTC-T-C-C-AATTA-GTA--A---TCTG----AT--AC--AAAT-A-CTTA----GTTTTGTGTCTAT-TTGT---ATA------TAG-ACTTTA----A----AT---AT---TCA----T---TT----CA-GC-GTTTT--AA---TC-A-T-----TTT---ACAACTGA----T-------GGT----A-TG---T-GG--TTCTAT-GAAATG-ACT-TAG---AATTG-CGCAGA-----TTT-GCG-CGTGA-TGG-TA-AAT-AA-----A-AT------TTTAATATATCCA---AACAG------TGGG-GC-GTCG-TTT--GAACTA-CA-GTTGAATATGA-GAGTTGA-GT-----ATGGTGAGA-A--ACAA--GATAGTTAGGATTTAGAAGAGC-TGATTGG--AAGTTGGGGTA-A--GA-G-GG-ATTG-AATA-TGA-TGGACAGGGGATGAGT-GGT--TATTGTTGCA-AGGAA--T--TATTGACATAG--TCA-T-GTTT-GTT-TCTTTG-CCTT-A-ATACTGTGT-GC-TTCTGGTGATGGG-AGGGAA-TGG-AAACTGATGAAGATGGGGATGAA-GTGGGAATGA---AGTC-TGATAGGA-TGGAA-T--TT---TGATGAT--T--G-AT----AT-CAGTTGAAG---GCGTTAA--TG-T-C-A-ATT--TGC-AAATATTGTTTGT-TTAGCA--TAC-TTCAT---G-----TA---TTACTATTTGAAAAG-T--TC--AATACTC---ATTA-TGCGAAAAATG-TT--T-ATTTACAGA----G-ATTTA--TTATTTAt
gi|5 : atCCATTAACTTCTC-C-C-AATTAAGTA--AAAATATG-C--ATT-CCC-CAATCA-CTTA----GTTTTATGCTAAA-TTCT---TTG------TAA-GTTTTA----AT---AT---CT---ACA----T---TCTC-A-A-TT-CTTTCCCAATTTCC-A-T-----TTT---A--AC-AACAG-T-------GGT-C-AA-CGAC-T-GC--CTCTATTGAAATG-ACa
gi|5 : AAATCG-TCCAAAG--CATTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACTTATCGA---A-CAGC---CCTCGT-AC-ATCA-TAT--AAACTATCA-GTCGTACATTT-GGCTTCATAC--TG-ATGACAATC-A--GCAA--GATCTCCCAGACTTGGAAGGGAGTGGAT-GGAAAGTTGG--TGCATTG--G-GG-ATTT-AATA-TGA----ACA-------AAT-GGTGCTATTGTGTCACAGGAAC-T--TATTGACAT------ACT-A------TA----TG-CTTCTA------GT----------GATGA---GCAGGGGAATGG-AA-CTGATGAAGATGGGGATGA---------------AGTC-TGAT-CGA-TGAAA-TA-TTTGATGATGATCAT--G-ATaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccaaatcgtccaaagcattatcgcgctgtggtacaatacacattacttatcgaacagccctcgtacatcatataaactatcagtcgtacatttggcttcatactgatgacaatcagcaagatctcccagacttggaagggagtggatggaaagttggtgcattggggatttaatatgaacaaatggtgctattgtgtcacaggaacttattgacatactatatgcttctagtgatgagcaggggaatggaactgatgaagatggggatgaagtctgatcgatgaaatatttgatgatgatcatgatgatgacaatgatcattttattactggtt
gi|6 : ccattaacttctcccaattaagtaaaaatatgcattccccaatcacttagttttatgctaaattctttgtaagttttaatatctacattctcaattctttcccaatttccattttaacaacagtggtcaacgactgcctctattgaaatgacaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccCCATTAACGTC-T-T-C-AGTTAAGTAAAAAAATCTGAC--ATTAACCAGAATCA-CTGA----GCTTTATG-TAAC-TT-T----TAGGAGAGTAACGCTATATAATAT---AT---CT----CA----T---TTTCAACAGAC-GTTTCTTAG---CC-A-T-----CTTTACA--AC-AG----T-------GGT-CAAA-CGAC-T-AGACTTTTATTG-AATGTACT-Tgatgacaatgatcattttattactggtt
gi|6 : GAAATCG-CACAAGA--CATTA-TTG-CGCTG-TGG-CACAGT-AC-----ACAT------G---ACGAATCCA---A-CAG----CCTCGTAACGGTCGTTTT--AAATCATCA-CTCGCACATTTGGGCTTAATGCTTTG-GTGACAAGC-A--GCTAGGGATCT-CCAGACTTGGAAGGGActatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatgaaatcgcacaagacattattgcgctgtggcacagtacacatgacgaatccaacagcctcgtaacggtcgttttaaatcatcactcgcacatttgggcttaatgctttggtgacaagcagctagggatctccagacttggaaggga
gi|7 : ccattaacgtcttcagttaagtaaaaaaatctgacattaaccagaatcactgagctttatgtaacttttaggagagtaacgctatataatatatctcattttcaacagacgtttcttagccatctttacaacagtggtcaaacgactagacttttattgaatgtacttctatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatCTATAAACTTC-T-CTC-AATGAAATG--AAGATCTG-C--ATT-ACC-GAATTA-ATTACCACGTAGTGTGCTAAC-TT-TT--ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-AAT-AC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AACAG-T-------GGT-A-GA-CGACTT-G---CTCTATTGAAATG-ACTATAAG
gi|7 : -AT-GTCG-TGT--AAAATATCA-GTCATACATTT-GGCTTCATGC--TG-ACGACAAGC-A--GCTA--AATCTCCCAGACTTTGAAGGG-GTGGAT-GGAAACATGG--CACA--GA-G-Gtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattatgtcgtgtaaaatatcagtcatacatttggcttcatgctgacgacaagcagctaaatctcccagactttgaaggggtggatggaaacatggcacagagg
gi|8 : ctataaacttctctcaatgaaatgaagatctgcattaccgaattaattaccacgtagtgtgctaacttttatataagctctaatatctacattctcaatacgtttcccaaccattttaacaacagtggtagacgacttgctctattgaaatgactataagtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattGAAAATCG-CACAAAAAACATTAATCG-TGCTGATGG-TACAAT-AC-----ACAT------G---ACATATCCA---A-CAGC---CCTCTC-AC-GTCG-TTT--AAACTATCATGTTGTGCATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA---ATCTCCCAGACTTAGAAGAGAATGAAT-GGCAAGTTGG--TACA--GAGG-GG-ATTGAAATA-TGAATGGAC--------AGT-GGTGCTATTGTGCCACAGGAGCCT--TA-TGACATAGATTCACT-GTTC-GTTA-CTTTGCCCTTTACATACTGT
gi|9 : atgtggagctgacaaggctcgtgtttattttgtttgaaagttaaaggcgtttcaagagtatcatcatccatCATAAACTTC-C-C-CCAATTCAGTA--AAAATCTA-C--ATT-ACC-GAAT--------------------GAAC-TTCT---ATA------TAA-GTTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAA---CC-A-TCAGTGCTT------AC-TG----T-------GGT-C-AA-CGAC-TGG---CTCTAT--AA--G-ACTCTAAG
gi|9 : AAATCG-TACA--G--TGTTA-TTG-CACTG-TGG-TACAAT-AC-----ACATTATATAT---ACATATCAA---A-CAGC---CCTCGT-AC-tttaaaactatgtggagctgagggtgtgcgtttatataccattagaaagctattcaagagtatcatcatctacaaaatcgtacagtgttattgcactgtggtacaatacacattatatatacatatcaaacagccctcgtaca
Alignments
lowQualScore : 11111 111 1111 333333333333333333 22222 1 1111111111 222 1 1111111 111111 1111 111 111 111 22 222222222 111 11 22222222 11
lowQualScore : 9 3 6 3 0 44 5555 3 3 5 6 2 6666 33 5 77777 888888 5 2 6666 555 555 555 6666 555 2 3333 2 0 555 2 2 77777 444444444444444444 666 5 2 77777 8 2 5 444 44 4 3 3 3 3 3 77777 3333333333 555 3 555 33 4 4 66 4 0 4 66 4 4 66 666 0 0 000 66 66 0 5 5 5 5 5 8888888 5 777777 9999 6 88 7 6 6 3 8 8 0 111 6 6 3 6 2 66 99 5 5 5 5 5 000 1 3 77 5 5 6 888 99 6 6 6 6 6 6 44 666666666 111 99 6 6 99 7 6 6 8 11 8 00000000 0 11 0
lowQualScore : . . . . . .. .... . . . . . .... .. . ..... ...... . . .... ... ... ... .... ... . .... . . ... . . ..... .................. ... . . ..... . . . ... .. . . . . . . ..... .......... ... . ... .. . . .. . . . .. . . .. ... . . ... .. .. . . . . . . ....... . ...... .... . .. . . . . . . . ... . . . . . .. .. . . . . . ... . . .. . . . ... .. . . . . . . .. ......... ... .. . . .. . . . . .. . ........ . .. .
lowQualScore : 2 1 2 1 2 22 0000 1 1 9 2 7 5555 44 7 77777 222222 7 2 1111 000 000 000 1111 000 9 7777 9 6 000 9 9 11111 111111111111111111 444 7 9 66666 5 5 4 333 22 4 1 1 1 1 1 77777 8888888888 444 1 888 22 0 4 11 4 7 4 11 4 4 11 222 1 9 999 99 99 0 0 7 7 7 0 6666666 7 888888 7777 7 55 3 7 7 2 0 0 8 444 7 7 5 7 5 88 88 7 7 7 7 7 000 7 0 99 7 2 7 555 22 7 7 7 7 7 7 33 333333333 777 22 7 7 22 3 7 7 0 00 0 22222222 8 00 8
consensus : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AA-------TGGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACCT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGGGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
Reference ( family-1063 ) : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AA-------TGGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACCT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGGGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|1 : CCATTAACTTT-C-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGTTAAC-TT-T---ATA------TAA-ACTTTA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCTAA---CC-A-T-----TT---------------------GT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATTGCCACAAAG--CATTA-TCG-CGCTG-TGGTTACAATAAC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGTTTAATTC--TGAATGACAAGCAA--GCTA--GATCTCCCAGACTTAGAAGGGAAGGAATAGAAAAGTTGG--TACA--GA-G-GG-ATTG-AATATTGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTTAATATTGACATATA-TCACTAGTTTCGTTATCTTTG-CTTTTACATACTGTGT-GCTTTCTGGTGATGATCAGGGAAATGA-AA-CTGATGAAGAAGGGAATGAA-GTGGATATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATAATCAT--G-ATCACCAT-CAGTTGAA-G-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA--TACATTCATTA-G-----TT---TTA--ATTTGAAATG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|10 : CATAAACTTC-CAC-T-AATTCAGTA--ATGATATG-C--ATT-ACC-GAATTG-CCAA----CTTTTGTGCGAAC-TT-TC--ATA------TCT-GCTTTA----AT---TT---TC---TCAATGTT---TTTT-A-G-CC-GTTTCCAAA---CC-AGT-----TTTAC-A--AC-AA-------TAAT-G-AA-CGAT-T-GA--CACTACTGAAATG-ACTATAAG
gi|10 : AACA-ATT-CAAGAGTATCG-CCCAATG--CGTCA-TCG-GGCTG-TAT-TACAAT-ACTAATGACA-------T---ATACATCAA---A-TAAC---CCTCGT-Atttaaaactatgtagagctgaaggcccgtgttactgaatagaacaattcaagagtatcgcccaatgcgtcatcgggctgtattacaatactaatgacatatacatcaaataaccctcgtaac
gi|11 : cataaacttccactaattcagtaatgatatgcattaccgaattgccaacttttgtgcgaactttcatatctgctttaattttctcaatgttttttagccgtttccaaaccagttttacaacaataatgaacgattgacactactgaaatgactataagtttaaaactatgtagagctgaaggcccgtgttactgaatagAACTTC-C-AAC-AATTCAGTA--AAATTCTG-C--ATT-ACC-AAATGA-CCAA----GTTTTGTGCGAAC-TT-T---ATG------TAA-GCTCCA----AT---TT---CTTCAATA----TTAATCTA-AAC-CC-TTTTCCCAA---AC-A-T-----TTTAC-A--AC-AG-------TGGT-C-AA-TGAC-TGG---CTCTATTGAAATG-ACTATAAGac
gi|11 : aAAGAAACCG-TGCAAAG--CGTTA-TCA-TGTTG-TGG-TACAAT-AC-----ACAT------T---ACATATCGA---A-CAGC---ACTTGT-Atttaaaactagttggacctgaagagctattcaagagtatcatcatccaagaaaccgtgcaaagcgttatcatgttgtggtacaatacacattacatatcgaacagcacttgtata
gi|12 : aaacttccaacaattcagtaaaattctgcattaccaaatgaccaagttttgtgcgaactttatgtaagctccaatttcttcaatattaatctaaacccttttcccaaacattttacaacagtggtcaatgactggctctattgaaatgactataagtttaaaactagttggacctgaagagctattcaagagtatcatcatccTCC-T-T-C-AATTCAGTG--AAAATCTA-C--ATT-ATC-GATTGA-CCAA----GTTTTGTGCAAGT-TT-TC--ATA------TAA-GCTCTA----ATTTCGT---CA---ATA----T---TCTC--CACCC-GTTTCCCAA---CC-A-T-----TTTTACA--AC-AG-------TGGC-C-AA-AGAC-TGG---CTCTATTGAAATG-ACTATAAGta
gi|13 : cgtaaatg-------TGAT-C-AA-CGAC-T-GG--CTCTATCGAAATG-AGT-TAAG-AAATTA-CGCAATG--CATTA-TCG-CGCTG-TAG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAATTATCA-GTTGTACATTT-GGATTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGAGAATGAAT-GGAAAGTTGG--TACA--AA-GAGG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCttaaaaactacatgtatgtgaagctgaagactcgtgtttataccgttggacatgtataagagtattatcatctacgaaatcgtgc
gi|14 : gAGGGAAATGGGAA-CTGATGAAAATGGGGATGAAAGTGGAA-TGAAACAGTCCTGAT-CGA-TGGGA-TA-TT---TAATGATTAT--G-ATCACTAT-CAGTGGAAG--CGCGTTAA--TGCT-CAA-ATTTATGCAAAAT-TTGTTTGT-TTA-CA--TACATTCATTA-A-----TT---TTA--ATTTGAAACG-T-ATTAAACTACTCAAAATTA-TGC-AAAATTG-TT--TAATTTACA-A----GAAATTGGAATATTTACA
gi|15 : caTC-TGAT-CGAGTGAAAATAATT---TGAT-----T--G-A-CATCAT-CAATTTAAGG-CGCATTAA--TGCTGCAATATTTACG--AAAT-TTGTT-GT-TTA-CAGGTACATTAATAAGG-----TT---TTA--A-TTGAAACGAT-ATT--GCTACTCAAAATTATTGC----ATTT-TTTAT-ATTTACT-GTCCTA-AATTG--ATATTTGCA
gi|16 : CCATTAACTTCTC-C-C-AATTAAGTA--AAAATCTG-CGCATT-ACC-GA-TCAACTTA----GTTTTGT--CAAC-TT-TTATATA------TAAAGCT-TA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCAAA---CC-A-T-----TTT---C--AC-AAAAAG---TGGTCC-AACCGAC-TGG---CTCTATTGAAATG-A
gi|17 : GGAATCT-TGCAAAG--CGTTA-TCA-TGCTG-TAG-TACGAT-GC-----ACAT------T---GTATATCGA---A-AAAC---CCTCGT-A
gi|18 : agttgaaggctcgtgaatatactgttgaaaaggtattggaattctaaagtatcatcaaccatCTCC-C-C-T-CATCCAGTA--AAAATCTG-C--ATT-ACC-AAATGA-CGAA----CTTTTATATAAGC---------TA------TAA-GCTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAG---CC-A-T-----TTC---T--AC-AA-------
gi|19 : cccataaactcccccTTTGTGCAAACATT-T---GTA------TAA-GCTCTA----AT---ATTGTCA---ACA----A---TCTC-AAT-TC-GTTTGCCAA---CC-A-T-----TTT---G--AC-AA-------CAGT---A--------------TCTATTGAAATA-A
gi|2 : tatattgacgagtgaccgatttttgCCATTAACTTCTC-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCTAACTTT-T---ATC------TAA-ACTTTA----AT---AT---CT---GCA----T---TCTC-ACA-GC-GTTTCCTAA---CT-A-T-----TTTCACA--AC-AG-------TGGT-C-AA-CGAC-TGG---CTCTATCGAAATG-ACT-TAAGataaaaac
gi|2 : TTTAT-GAAAAG-A-T-CCATGAAATCG-CACAAAG--CATTA-TCG-CGTTG-TGG-TACA-----------------------------TCCA---A-CAGC---CCGCGC-AC-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGCTTAATGC--TG-ATGA-----------------TTTCCCAGACTTAGAAGGAAATGAATGG-AAAGTTGG--TACA--GA-G-GGGATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAAC-T--TATTGACATAGA-TCACT-GTTA-GTTATCTTTG-CTTATACATACTATGT-GC-TTCTGGTGATGAGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-AGGAA-TA-TT---TGA-GATCATCCG-ATCA-CATCCAG-TGA--G-CGCGTTAGACTGCG-CAA-ATTTATGC-AAAT-TGGTTTGTGTTA-CA-GTA-A--CATCG-A-----TTGAATTA--ATT--GAATG-TAATT--ACTACTC--AATTA-TGC-AGAtttaaaattatgtggaactaaaggctcatgtttattttatgaaaagatccatgaaatcgcacaaagcattatcgcgttgtggtacatccaacagcccgcgcacgtcgtttaaactatcagttgtacatttggcttaatgctgatgatttcccagacttagaaggaaatgaatggaaagttggtacagaggggattgaatatgaatggacaagtggtgctattgtgccacaggaacttattgacatagatcactgttagttatctttgcttatacatactatgtgcttctggtgatgagcagggaaatggaactgatgaagatggggatgaagtggaaatgaacagtctgatcgaaggaatatttgagatcatccgatcacatccagtgagcgcgttagactgcgcaaatttatgcaaattggtttgtgttacagtaacatcgattgaattaattgaatgtaattactactcaattatgcaga
gi|20 : ccattaacttctcccaattaagtgaaaatctgcattaccgaatcacttagttttgtgctaacttttatctaaactttaatatctgcattctcacagcgtttcctaactattttcacaacagtggtcaacgactggctctatcgaaatgacttaagtttaaaattatgtggaactaaaggctcatgtttatGAAATCG-TGCAAAG--C-TTA-CCTTCGCTG-TGG-TACAAT-AC-----ACGA------T---ACATAT-CG---A-CAG
gi|3 : acCCATTAACTTC-T-C-C-AATTAAGTA--AAC-TCTG----ATT-ACC-G--TCAGCTTA----GTTTT-TGGCAAC-TGGT---ATA------TGA-GTATTA----AT---AT---C----ACT----A---TCTC-ACA-GCCGTTTCCAAG---CCCA-T-----GTT---C--AC-AAGACAGTGTGGT-C-AAACGAC-T-GGC-CTCTATC-AAAT--ACT---AAGAAATTG--ACAAAG--CATTA-CGG-CG-TG-TAA-TAC-----C-----ACATA-----T---ACAGGTACAGTGA-CAACACGCCTCGC-AT-GTCG-TTTTAAAACTATCA-GTTGTACATTT-GGCT-AATG---TG-ATGACGAGC-ACAGCTA--GAT-TCCCAGA-TTAGAAAG-AATGAATG--AAATTCGG--TACA--GAGG-GG-ATTG-AATA--GAATGGACA-------AGTGGGTGC-ATTGTGCCACAGGA--CT--TATTGACAT--A-TCACT-GTTT-GTTATCTTT---CTTTACATAC-GTGTCGC-TTCTGGTGATGG--AGAAAAATGG-AA-CTGATGAGAA--GGGA-GAA-GT-GATATGAA-CAGTC-TGAT-CGA-T-GAA-TA-TT---T-ATAATCAT--GCATCACCAT-CAGTTGAAAGCCGCGTTAA--TGCT-CAT-AATTATGC-AAAA-TTGTTTAT-TTC-CA-A-ACATTCATAA-AAAAATTT---TTG--ATTTGAAACG-T-ATT--AC-ACTCAAAATTA-TGC-AAAATTGTTT--T-ATTTACA-A----G-AA-TG--ATA-TTACAacattcgta
gi|4 : TTAA-TTC-T-C-C-AATTA-GTA--A---TCTG----AT--AC--AAAT-A-CTTA----GTTTTGTGTCTAT-TTGT---ATA------TAG-ACTTTA----A----AT---AT---TCA----T---TT----CA-GC-GTTTT--AA---TC-A-T-----TTT---ACAACTGA-------TGGT----A-TG---T-GG--TTCTAT-GAAATG-ACT-TAG---AATTG-CGCAGA-----TTT-GCG-CGTGA-TGG-TA-AAT-AA-----A-AT------TTTAATATATCCA---AACAG------TGGG-GC-GTCG-TTT--GAACTA-CA-GTTGAATATGA-GAGTTGA-GT-----ATGGTGAGA-A--ACAA--GATAGTTAGGATTTAGAAGAGC-TGATTGG--AAGTTGGGGTA-A--GA-G-GG-ATTG-AATA-TGA-TGGACAGGGGATGAGT-GGT--TATTGTTGCA-AGGAA--T--TATTGACATAG--TCA-T-GTTT-GTT-TCTTTG-CCTT-A-ATACTGTGT-GC-TTCTGGTGATGGG-AGGGAA-TGG-AAACTGATGAAGATGGGGATGAA-GTGGGAATGA---AGTC-TGATAGGA-TGGAA-T--TT---TGATGAT--T--G-AT----AT-CAGTTGAAG---GCGTTAA--TG-T-C-A-ATT--TGC-AAATATTGTTTGT-TTAGCA--TAC-TTCAT---G-----TA---TTACTATTTGAAAAG-T--TC--AATACTC---ATTA-TGCGAAAAATG-TT--T-ATTTACAGA----G-ATTTA--TTATTTAt
gi|5 : atCCATTAACTTCTC-C-C-AATTAAGTA--AAAATATG-C--ATT-CCC-CAATCA-CTTA----GTTTTATGCTAAA-TTCT---TTG------TAA-GTTTTA----AT---AT---CT---ACA----T---TCTC-A-A-TT-CTTTCCCAATTTCC-A-T-----TTT---A--AC-AACAG----TGGT-C-AA-CGAC-T-GC--CTCTATTGAAATG-ACa
gi|5 : AAATCG-TCCAAAG--CATTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACTTATCGA---A-CAGC---CCTCGT-AC-ATCA-TAT--AAACTATCA-GTCGTACATTT-GGCTTCATAC--TG-ATGACAATC-A--GCAA--GATCTCCCAGACTTGGAAGGGAGTGGAT-GGAAAGTTGG--TGCATTG--G-GG-ATTT-AATA-TGA----ACA-------AAT-GGTGCTATTGTGTCACAGGAA-CT--TATTGACAT------ACT-A------TA----TG-CTTCTA------GT----------GATGA---GCAGGGGAATGG-AA-CTGATGAAGATGGGGATGA---------------AGTC-TGAT-CGA-TGAAA-TA-TTTGATGATGATCAT--G-ATaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccaaatcgtccaaagcattatcgcgctgtggtacaatacacattacttatcgaacagccctcgtacatcatataaactatcagtcgtacatttggcttcatactgatgacaatcagcaagatctcccagacttggaagggagtggatggaaagttggtgcattggggatttaatatgaacaaatggtgctattgtgtcacaggaacttattgacatactatatgcttctagtgatgagcaggggaatggaactgatgaagatggggatgaagtctgatcgatgaaatatttgatgatgatcatgatgatgacaatgatcattttattactggtt
gi|6 : ccattaacttctcccaattaagtaaaaatatgcattccccaatcacttagttttatgctaaattctttgtaagttttaatatctacattctcaattctttcccaatttccattttaacaacagtggtcaacgactgcctctattgaaatgacaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccCCATTAACGTC-T-T-C-AGTTAAGTAAAAAAATCTGAC--ATTAACCAGAATCA-CTGA----GCTTTATG-TAAC-TT-T----TAGGAGAGTAACGCTATATAATAT---AT---CT----CA----T---TTTCAACAGAC-GTTTCTTAG---CC-A-T-----CTTTACA--AC-AG-------TGGT-CAAA-CGAC-T-AGACTTTTATTG-AATGTACT-Tgatgacaatgatcattttattactggtt
gi|6 : GAAATCG-CACAAGA--CATTA-TTG-CGCTG-TGG-CACAGT-AC-----ACAT------G---ACGAATCCA---A-CAG----CCTCGTAACGGTCGTTTT--AAATCATCA-CTCGCACATTTGGGCTTAATGCTTTG-GTGACAAGC-A--GCTAGGGATCT-CCAGACTTGGAAGGGActatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatgaaatcgcacaagacattattgcgctgtggcacagtacacatgacgaatccaacagcctcgtaacggtcgttttaaatcatcactcgcacatttgggcttaatgctttggtgacaagcagctagggatctccagacttggaaggga
gi|7 : ccattaacgtcttcagttaagtaaaaaaatctgacattaaccagaatcactgagctttatgtaacttttaggagagtaacgctatataatatatctcattttcaacagacgtttcttagccatctttacaacagtggtcaaacgactagacttttattgaatgtacttctatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatCTATAAACTTC-T-CTC-AATGAAATG--AAGATCTG-C--ATT-ACC-GAATTA-ATTACCACGTAGTGTGCTAAC-TT-TT--ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-AAT-AC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AACAG----TGGT-A-GA-CGACTT-G---CTCTATTGAAATG-ACTATAAG
gi|7 : -AT-GTCG-TGT--AAAATATCA-GTCATACATTT-GGCTTCATGC--TG-ACGACAAGC-A--GCTA--AATCTCCCAGACTTTGAAGGG-GTGGAT-GGAAACATGG--CACA--GA-G-Gtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattatgtcgtgtaaaatatcagtcatacatttggcttcatgctgacgacaagcagctaaatctcccagactttgaaggggtggatggaaacatggcacagagg
gi|8 : ctataaacttctctcaatgaaatgaagatctgcattaccgaattaattaccacgtagtgtgctaacttttatataagctctaatatctacattctcaatacgtttcccaaccattttaacaacagtggtagacgacttgctctattgaaatgactataagtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattGAAAATCG-CACAAAAAACATTAATCG-TGCTGATGG-TACAAT-AC-----ACAT------G---ACATATCCA---A-CAGC---CCTCTC-AC-GTCG-TTT--AAACTATCATGTTGTGCATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA---ATCTCCCAGACTTAGAAGAGAATGAAT-GGCAAGTTGG--TACA--GAGG-GG-ATTGAAATA-TGAATGGAC--------AGT-GGTGCTATTGTGCCACAGGAGCCT--TA-TGACATAGATTCACT-GTTC-GTTA-CTTTGCCCTTTACATACTGT
gi|9 : atgtggagctgacaaggctcgtgtttattttgtttgaaagttaaaggcgtttcaagagtatcatcatccatCATAAACTTC-C-C-CCAATTCAGTA--AAAATCTA-C--ATT-ACC-GAAT--------------------GAAC-TTCT---ATA------TAA-GTTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAA---CC-A-TCAGTGCTT------AC-TG-------TGGT-C-AA-CGAC-TGG---CTCTAT--AA--G-ACTCTAAG
gi|9 : AAATCG-TACA--G--TGTTA-TTG-CACTG-TGG-TACAAT-AC-----ACATTATATAT---ACATATCAA---A-CAGC---CCTCGT-AC-tttaaaactatgtggagctgagggtgtgcgtttatataccattagaaagctattcaagagtatcatcatctacaaaatcgtacagtgttattgcactgtggtacaatacacattatatatacatatcaaacagccctcgtaca
Alignments
lowQualScore : 11111 111 1111 333333333333333333 22222 1 1111111111 222 1 1111111 111111 1111 111 111 111 22 222222222 111 11 22222222 11
lowQualScore : 9 3 6 3 0 44 5555 3 3 5 6 2 6666 33 5 77777 888888 5 2 6666 555 555 555 6666 555 2 3333 2 0 555 2 2 77777 444444444444444444 666 5 2 77777 8 2 5 444 44 4 3 3 3 3 3 77777 3333333333 555 3 555 33 4 4 66 4 0 4 66 4 4 66 666 0 0 000 66 66 0 5 5 5 5 5 8888888 5 777777 9999 6 88 7 6 6 3 8 8 0 111 6 6 3 6 2 66 99 5 5 5 5 5 000 1 3 77 5 5 6 888 99 6 6 6 6 6 6 44 666666666 111 99 6 6 99 7 6 6 8 11 8 00000000 0 11 0
lowQualScore : . . . . . .. .... . . . . . .... .. . ..... ...... . . .... ... ... ... .... ... . .... . . ... . . ..... .................. ... . . ..... . . . ... .. . . . . . . ..... .......... ... . ... .. . . .. . . . .. . . .. ... . . ... .. .. . . . . . . ....... . ...... .... . .. . . . . . . . ... . . . . . .. .. . . . . . ... . . .. . . . ... .. . . . . . . .. ......... ... .. . . .. . . . . .. . ........ . .. .
lowQualScore : 2 1 2 1 2 22 0000 1 1 9 2 7 5555 44 7 77777 222222 7 2 1111 000 000 000 1111 000 9 7777 9 6 000 9 9 11111 111111111111111111 444 7 9 66666 5 5 4 333 22 4 1 1 1 1 1 77777 8888888888 444 1 888 22 0 4 11 4 7 4 11 4 4 11 222 1 9 999 99 99 0 0 7 7 7 0 6666666 7 888888 7777 7 55 3 7 7 2 0 0 8 444 7 7 5 7 5 88 88 7 7 7 7 7 000 7 0 99 7 2 7 555 22 7 7 7 7 7 7 33 333333333 777 22 7 7 22 3 7 7 0 00 0 22222222 8 00 8
consensus : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AA-------TGGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACCT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGGGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
Reference ( family-1063 ) : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AA-------TGGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACCT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGGGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|1 : CCATTAACTTT-C-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGTTAAC-TT-T---ATA------TAA-ACTTTA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCTAA---CC-A-T-----TT---------------------GT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATTGCCACAAAG--CATTA-TCG-CGCTG-TGGTTACAATAAC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGTTTAATTC--TGAATGACAAGCAA--GCTA--GATCTCCCAGACTTAGAAGGGAAGGAATAGAAAAGTTGG--TACA--GA-G-GG-ATTG-AATATTGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACTTAATATTGACATATA-TCACTAGTTTCGTTATCTTTG-CTTTTACATACTGTGT-GCTTTCTGGTGATGATCAGGGAAATGA-AA-CTGATGAAGAAGGGAATGAA-GTGGATATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATAATCAT--G-ATCACCAT-CAGTTGAA-G-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA--TACATTCATTA-G-----TT---TTA--ATTTGAAATG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|10 : CATAAACTTC-CAC-T-AATTCAGTA--ATGATATG-C--ATT-ACC-GAATTG-CCAA----CTTTTGTGCGAAC-TT-TC--ATA------TCT-GCTTTA----AT---TT---TC---TCAATGTT---TTTT-A-G-CC-GTTTCCAAA---CC-AGT-----TTTAC-A--AC-AA-------TAAT-G-AA-CGAT-T-GA--CACTACTGAAATG-ACTATAAG
gi|10 : AACA-ATT-CAAGAGTATCG-CCCAATG--CGTCA-TCG-GGCTG-TAT-TACAAT-ACTAATGACA-------T---ATACATCAA---A-TAAC---CCTCGT-Atttaaaactatgtagagctgaaggcccgtgttactgaatagaacaattcaagagtatcgcccaatgcgtcatcgggctgtattacaatactaatgacatatacatcaaataaccctcgtaac
gi|11 : cataaacttccactaattcagtaatgatatgcattaccgaattgccaacttttgtgcgaactttcatatctgctttaattttctcaatgttttttagccgtttccaaaccagttttacaacaataatgaacgattgacactactgaaatgactataagtttaaaactatgtagagctgaaggcccgtgttactgaatagAACTTC-C-AAC-AATTCAGTA--AAATTCTG-C--ATT-ACC-AAATGA-CCAA----GTTTTGTGCGAAC-TT-T---ATG------TAA-GCTCCA----AT---TT---CTTCAATA----TTAATCTA-AAC-CC-TTTTCCCAA---AC-A-T-----TTTAC-A--AC-AG-------TGGT-C-AA-TGAC-TGG---CTCTATTGAAATG-ACTATAAGac
gi|11 : aAAGAAACCG-TGCAAAG--CGTTA-TCA-TGTTG-TGG-TACAAT-AC-----ACAT------T---ACATATCGA---A-CAGC---ACTTGT-Atttaaaactagttggacctgaagagctattcaagagtatcatcatccaagaaaccgtgcaaagcgttatcatgttgtggtacaatacacattacatatcgaacagcacttgtata
gi|12 : aaacttccaacaattcagtaaaattctgcattaccaaatgaccaagttttgtgcgaactttatgtaagctccaatttcttcaatattaatctaaacccttttcccaaacattttacaacagtggtcaatgactggctctattgaaatgactataagtttaaaactagttggacctgaagagctattcaagagtatcatcatccTCC-T-T-C-AATTCAGTG--AAAATCTA-C--ATT-ATC-GATTGA-CCAA----GTTTTGTGCAAGT-TT-TC--ATA------TAA-GCTCTA----ATTTCGT---CA---ATA----T---TCTC--CACCC-GTTTCCCAA---CC-A-T-----TTTTACA--AC-AG-------TGGC-C-AA-AGAC-TGG---CTCTATTGAAATG-ACTATAAGta
gi|13 : cgtaaatg-------TGAT-C-AA-CGAC-T-GG--CTCTATCGAAATG-AGT-TAAG-AAATTA-CGCAATG--CATTA-TCG-CGCTG-TAG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AT-GTCG-TTT--AAATTATCA-GTTGTACATTT-GGATTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGAGAATGAAT-GGAAAGTTGG--TACA--AA-GAGG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCttaaaaactacatgtatgtgaagctgaagactcgtgtttataccgttggacatgtataagagtattatcatctacgaaatcgtgc
gi|14 : gAGGGAAATGGGAA-CTGATGAAAATGGGGATGAAAGTGGAA-TGAAACAGTCCTGAT-CGA-TGGGA-TA-TT---TAATGATTAT--G-ATCACTAT-CAGTGGAAG--CGCGTTAA--TGCT-CAA-ATTTATGCAAAAT-TTGTTTGT-TTA-CA--TACATTCATTA-A-----TT---TTA--ATTTGAAACG-T-ATTAAACTACTCAAAATTA-TGC-AAAATTG-TT--TAATTTACA-A----GAAATTGGAATATTTACA
gi|15 : caTC-TGAT-CGAGTGAAAATAATT---TGAT-----T--G-A-CATCAT-CAATTTAAGG-CGCATTAA--TGCTGCAATATTTACG--AAAT-TTGTT-GT-TTA-CAGGTACATTAATAAGG-----TT---TTA--A-TTGAAACGAT-ATT--GCTACTCAAAATTATTGC----ATTT-TTTAT-ATTTACT-GTCCTA-AATTG--ATATTTGCA
gi|16 : CCATTAACTTCTC-C-C-AATTAAGTA--AAAATCTG-CGCATT-ACC-GA-TCAACTTA----GTTTTGT--CAAC-TT-TTATATA------TAAAGCT-TA----AT---AT---CT---ACA----T---TCTC-ACA-GC-GTTTCCAAA---CC-A-T-----TTT---C--AC-AAAAAG---TGGTCC-AACCGAC-TGG---CTCTATTGAAATG-A
gi|17 : GGAATCT-TGCAAAG--CGTTA-TCA-TGCTG-TAG-TACGAT-GC-----ACAT------T---GTATATCGA---A-AAAC---CCTCGT-A
gi|18 : agttgaaggctcgtgaatatactgttgaaaaggtattggaattctaaagtatcatcaaccatCTCC-C-C-T-CATCCAGTA--AAAATCTG-C--ATT-ACC-AAATGA-CGAA----CTTTTATATAAGC---------TA------TAA-GCTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAG---CC-A-T-----TTC---T--AC-AA-------
gi|19 : cccataaactcccccTTTGTGCAAACATT-T---GTA------TAA-GCTCTA----AT---ATTGTCA---ACA----A---TCTC-AAT-TC-GTTTGCCAA---CC-A-T-----TTT---G--AC-AA-------CAGT---A--------------TCTATTGAAATA-A
gi|2 : tatattgacgagtgaccgatttttgCCATTAACTTCTC-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCTAACTTT-T---ATC------TAA-ACTTTA----AT---AT---CT---GCA----T---TCTC-ACA-GC-GTTTCCTAA---CT-A-T-----TTTCACA--AC-AG-------TGGT-C-AA-CGAC-TGG---CTCTATCGAAATG-ACT-TAAGataaaaac
gi|2 : TTTAT-GAAAAG-A-T-CCATGAAATCG-CACAAAG--CATTA-TCG-CGTTG-TGG-TACA-----------------------------TCCA---A-CAGC---CCGCGC-AC-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGCTTAATGC--TG-ATGA-----------------TTTCCCAGACTTAGAAGGAAATGAATGG-AAAGTTGG--TACA--GA-G-GGGATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAAC-T--TATTGACATAGA-TCACT-GTTA-GTTATCTTTG-CTTATACATACTATGT-GC-TTCTGGTGATGAGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-AGGAA-TA-TT---TGA-GATCATCCG-ATCA-CATCCAG-TGA--G-CGCGTTAGACTGCG-CAA-ATTTATGC-AAAT-TGGTTTGTGTTA-CA-GTA-A--CATCG-A-----TTGAATTA--ATT--GAATG-TAATT--ACTACTC--AATTA-TGC-AGAtttaaaattatgtggaactaaaggctcatgtttattttatgaaaagatccatgaaatcgcacaaagcattatcgcgttgtggtacatccaacagcccgcgcacgtcgtttaaactatcagttgtacatttggcttaatgctgatgatttcccagacttagaaggaaatgaatggaaagttggtacagaggggattgaatatgaatggacaagtggtgctattgtgccacaggaacttattgacatagatcactgttagttatctttgcttatacatactatgtgcttctggtgatgagcagggaaatggaactgatgaagatggggatgaagtggaaatgaacagtctgatcgaaggaatatttgagatcatccgatcacatccagtgagcgcgttagactgcgcaaatttatgcaaattggtttgtgttacagtaacatcgattgaattaattgaatgtaattactactcaattatgcaga
gi|20 : ccattaacttctcccaattaagtgaaaatctgcattaccgaatcacttagttttgtgctaacttttatctaaactttaatatctgcattctcacagcgtttcctaactattttcacaacagtggtcaacgactggctctatcgaaatgacttaagtttaaaattatgtggaactaaaggctcatgtttatGAAATCG-TGCAAAG--C-TTA-CCTTCGCTG-TGG-TACAAT-AC-----ACGA------T---ACATAT-CG---A-CAG
gi|3 : acCCATTAACTTC-T-C-C-AATTAAGTA--AAC-TCTG----ATT-ACC-G--TCAGCTTA----GTTTT-TGGCAAC-TGGT---ATA------TGA-GTATTA----AT---AT---C----ACT----A---TCTC-ACA-GCCGTTTCCAAG---CCCA-T-----GTT---C--AC-AAGACAGTGTGGT-C-AAACGAC-T-GGC-CTCTATC-AAAT--ACT---AAGAAATTG--ACAAAG--CATTA-CGG-CG-TG-TAA-TAC-----C-----ACATA-----T---ACAGGTACAGTGA-CAACACGCCTCGC-AT-GTCG-TTTTAAAACTATCA-GTTGTACATTT-GGCT-AATG---TG-ATGACGAGC-ACAGCTA--GAT-TCCCAGA-TTAGAAAG-AATGAATG--AAATTCGG--TACA--GAGG-GG-ATTG-AATA--GAATGGACA-------AGTGGGTGC-ATTGTGCCACAGGA--CT--TATTGACAT--A-TCACT-GTTT-GTTATCTTT---CTTTACATAC-GTGTCGC-TTCTGGTGATGG--AGAAAAATGG-AA-CTGATGAGAA--GGGA-GAA-GT-GATATGAA-CAGTC-TGAT-CGA-T-GAA-TA-TT---T-ATAATCAT--GCATCACCAT-CAGTTGAAAGCCGCGTTAA--TGCT-CAT-AATTATGC-AAAA-TTGTTTAT-TTC-CA-A-ACATTCATAA-AAAAATTT---TTG--ATTTGAAACG-T-ATT--AC-ACTCAAAATTA-TGC-AAAATTGTTT--T-ATTTACA-A----G-AA-TG--ATA-TTACAacattcgta
gi|4 : TTAA-TTC-T-C-C-AATTA-GTA--A---TCTG----AT--AC--AAAT-A-CTTA----GTTTTGTGTCTAT-TTGT---ATA------TAG-ACTTTA----A----AT---AT---TCA----T---TT----CA-GC-GTTTT--AA---TC-A-T-----TTT---ACAACTGA-------TGGT----A-TG---T-GG--TTCTAT-GAAATG-ACT-TAG---AATTG-CGCAGA-----TTT-GCG-CGTGA-TGG-TA-AAT-AA-----A-AT------TTTAATATATCCA---AACAG------TGGG-GC-GTCG-TTT--GAACTA-CA-GTTGAATATGA-GAGTTGA-GT-----ATGGTGAGA-A--ACAA--GATAGTTAGGATTTAGAAGAGC-TGATTGG--AAGTTGGGGTA-A--GA-G-GG-ATTG-AATA-TGA-TGGACAGGGGATGAGT-GGT--TATTGTTGCA-AGGAA--T--TATTGACATAG--TCA-T-GTTT-GTT-TCTTTG-CCTT-A-ATACTGTGT-GC-TTCTGGTGATGGG-AGGGAA-TGG-AAACTGATGAAGATGGGGATGAA-GTGGGAATGA---AGTC-TGATAGGA-TGGAA-T--TT---TGATGAT--T--G-AT----AT-CAGTTGAAG---GCGTTAA--TG-T-C-A-ATT--TGC-AAATATTGTTTGT-TTAGCA--TAC-TTCAT---G-----TA---TTACTATTTGAAAAG-T--TC--AATACTC---ATTA-TGCGAAAAATG-TT--T-ATTTACAGA----G-ATTTA--TTATTTAt
gi|5 : atCCATTAACTTCTC-C-C-AATTAAGTA--AAAATATG-C--ATT-CCC-CAATCA-CTTA----GTTTTATGCTAAA-TTCT---TTG------TAA-GTTTTA----AT---AT---CT---ACA----T---TCTC-A-A-TT-CTTTCCCAATTTCC-A-T-----TTT---A--AC-AACAG----TGGT-C-AA-CGAC-T-GC--CTCTATTGAAATG-ACa
gi|5 : AAATCG-TCCAAAG--CATTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACTTATCGA---A-CAGC---CCTCGT-AC-ATCA-TAT--AAACTATCA-GTCGTACATTT-GGCTTCATAC--TG-ATGACAATC-A--GCAA--GATCTCCCAGACTTGGAAGGGAGTGGAT-GGAAAGTTGG--TGCATTG--G-GG-ATTT-AATA-TGA----ACA-------AAT-GGTGCTATTGTGTCACAGGAA-CT--TATTGACAT------ACT-A------TA----TG-CTTCTA------GT----------GATGA---GCAGGGGAATGG-AA-CTGATGAAGATGGGGATGA---------------AGTC-TGAT-CGA-TGAAA-TA-TTTGATGATGATCAT--G-ATaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccaaatcgtccaaagcattatcgcgctgtggtacaatacacattacttatcgaacagccctcgtacatcatataaactatcagtcgtacatttggcttcatactgatgacaatcagcaagatctcccagacttggaagggagtggatggaaagttggtgcattggggatttaatatgaacaaatggtgctattgtgtcacaggaacttattgacatactatatgcttctagtgatgagcaggggaatggaactgatgaagatggggatgaagtctgatcgatgaaatatttgatgatgatcatgatgatgacaatgatcattttattactggtt
gi|6 : ccattaacttctcccaattaagtaaaaatatgcattccccaatcacttagttttatgctaaattctttgtaagttttaatatctacattctcaattctttcccaatttccattttaacaacagtggtcaacgactgcctctattgaaatgacaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccCCATTAACGTC-T-T-C-AGTTAAGTAAAAAAATCTGAC--ATTAACCAGAATCA-CTGA----GCTTTATG-TAAC-TT-T----TAGGAGAGTAACGCTATATAATAT---AT---CT----CA----T---TTTCAACAGAC-GTTTCTTAG---CC-A-T-----CTTTACA--AC-AG-------TGGT-CAAA-CGAC-T-AGACTTTTATTG-AATGTACT-Tgatgacaatgatcattttattactggtt
gi|6 : GAAATCG-CACAAGA--CATTA-TTG-CGCTG-TGG-CACAGT-AC-----ACAT------G---ACGAATCCA---A-CAG----CCTCGTAACGGTCGTTTT--AAATCATCA-CTCGCACATTTGGGCTTAATGCTTTG-GTGACAAGC-A--GCTAGGGATCT-CCAGACTTGGAAGGGActatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatgaaatcgcacaagacattattgcgctgtggcacagtacacatgacgaatccaacagcctcgtaacggtcgttttaaatcatcactcgcacatttgggcttaatgctttggtgacaagcagctagggatctccagacttggaaggga
gi|7 : ccattaacgtcttcagttaagtaaaaaaatctgacattaaccagaatcactgagctttatgtaacttttaggagagtaacgctatataatatatctcattttcaacagacgtttcttagccatctttacaacagtggtcaaacgactagacttttattgaatgtacttctatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatCTATAAACTTC-T-CTC-AATGAAATG--AAGATCTG-C--ATT-ACC-GAATTA-ATTACCACGTAGTGTGCTAAC-TT-TT--ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-AAT-AC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AACAG----TGGT-A-GA-CGACTT-G---CTCTATTGAAATG-ACTATAAG
gi|7 : -AT-GTCG-TGT--AAAATATCA-GTCATACATTT-GGCTTCATGC--TG-ACGACAAGC-A--GCTA--AATCTCCCAGACTTTGAAGGG-GTGGAT-GGAAACATGG--CACA--GA-G-Gtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattatgtcgtgtaaaatatcagtcatacatttggcttcatgctgacgacaagcagctaaatctcccagactttgaaggggtggatggaaacatggcacagagg
gi|8 : ctataaacttctctcaatgaaatgaagatctgcattaccgaattaattaccacgtagtgtgctaacttttatataagctctaatatctacattctcaatacgtttcccaaccattttaacaacagtggtagacgacttgctctattgaaatgactataagtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattGAAAATCG-CACAAAAAACATTAATCG-TGCTGATGG-TACAAT-AC-----ACAT------G---ACATATCCA---A-CAGC---CCTCTC-AC-GTCG-TTT--AAACTATCATGTTGTGCATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA---ATCTCCCAGACTTAGAAGAGAATGAAT-GGCAAGTTGG--TACA--GAGG-GG-ATTGAAATA-TGAATGGAC--------AGT-GGTGCTATTGTGCCACAGGAGCCT--TA-TGACATAGATTCACT-GTTC-GTTA-CTTTGCCCTTTACATACTGT
gi|9 : atgtggagctgacaaggctcgtgtttattttgtttgaaagttaaaggcgtttcaagagtatcatcatccatCATAAACTTC-C-C-CCAATTCAGTA--AAAATCTA-C--ATT-ACC-GAAT--------------------GAAC-TTCT---ATA------TAA-GTTCTA----AT---TT---CTTCAATA----T---TCTC-AAC-CC-GTTTCCCAA---CC-A-TCAGTGCTT------AC-TG-------TGGT-C-AA-CGAC-TGG---CTCTAT--AA--G-ACTCTAAG
gi|9 : AAATCG-TACA--G--TGTTA-TTG-CACTG-TGG-TACAAT-AC-----ACATTATATAT---ACATATCAA---A-CAGC---CCTCGT-AC-tttaaaactatgtggagctgagggtgtgcgtttatataccattagaaagctattcaagagtatcatcatctacaaaatcgtacagtgttattgcactgtggtacaatacacattatatatacatatcaaacagccctcgtaca
blockSeqs : T A A C AA CGC A A T A A CCAC CG A TTAT GGAGAG A T TAAT TTC TGT TCA ATGT TAA A CACC C TTT C G CAGTG CACAAGACAGTG CC C T AGAC T T A CC AA G A T A . . TAATG TATATAT GTG A ACG TA G T TA T G TT . . CA GGG GG GG TT G A G A . A GGGGATG G GCCT AGAT . A T C C T C . AGC G A T A G AA AA C A G A A TGA G T CC C C C AGC AC G T A A G G GG AAAAAAAT GAA CT A A AA A T G T TA A GTCCTA GA
blockSeqs : T . T . . AC . . G G A . CG T TC . C C . . . TCA . . . CAGA . . . . . CACAAAAAG CA A . GGC T . A TG . G . . . . . . TTTA . . . T . . . . . . . . . G GG . . G . . . . A . . ACT AGA . T T . C T . . GG . . T . G TA A . . . . . . G C . . T . GG . . . . . . . G AAGG . . . . . A . . . . . AGA .
blockSeqs : T . . . . C . . G . A . CA . TC . . C . . . TCA . . . ACC . . . . . TACAACAG G . . GA T . A CG . A . . . . . . AT . . . T . . . . . . . . . G GG . . . . . . . A . . ACT AG . T T . C T . . GC . . T . G AA A . . . . . . A C . . C . G . . . . . . . A TAA . . . . . A . . . . . GAG .
blockSeqs : . . . . . C . . C . T . TA . GT . . C . . . . . . . CAG . . . . . CACAACAG C . . GG C . A TG . G . . . . . . T . . . C . . . . . . . . . G GG . . . . . . . A . . CT A . C . . . . . . G . . T . . A . . . . . . . G C . . . . G . . . . . . . . CGA . . . . . . . . . . . AG .
blockSeqs : . . . . . C . . G . A . CA . GT . . C . . . . . . . ACC . . . . . ACAACTGA C . . GG T . C CA . A . . . . . . T . . . T . . . . . . . . . G GG . . . . . . . . . . AT . . . . . . . . . . . . . . . . . . . . G . . . . . G . . . . . . . . G . . . . . . . .
blockSeqs : . . . . . C . . C . T . CT . CT . . T . . . . . . . ATT . . . . . AACAACAG C . . GG T . . TG . A . . . . . . T . . . C . . . . . . . . . A GG . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . C . . C . T . GC . TT . . T . . . . . . . CAG . . . . . TACAACAG C . . GG C . . CG . A . . . . . . T . . . C . . . . . . . . . . G . . . .
blockSeqs : . . . . . C . . C . T . TC . CT . . T . . . . . . . CAG . . . . . AACAACAG C . . GG C . . TC . A . . . . . . T . . . G . . . . . . . . . .
blockSeqs : . . . . . C . . C . T . CT . T . . T . . . . . . . CAG . . . . . ACAACAA C . . GG T . . CA . A . . . . . . T . . . T .
blockSeqs : . . . . . C . . T . G . CT . T . . A . . . . . . . ATA . . . . . ACAACAG A . . GC T . . CA . G . . . . . . G . . . C
blockSeqs : . . . . . . . . . . T . C . T . . C . . . . . . . ACC . . . . . TACAA C . . GG T . . TA . . . . . . . . G . . . T
blockSeqs : . . . . . . . . . . . . T . T . . C . . . . . . . GC . . . . . GACAA . . . G . . . A . . . . . . . . . . .
blockSeqs : G . . . . . . . . . . . . AT . . . . . ACTG . . . . . .
blockSeqs : . .
blockSeqs : .
blockSeqCons : NT*** ACAACAG*********** GG*** CG* GG* ACT*** AGA* T* G** A* AG******
originalCons : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TT-T---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTT---A--AC-AA-------TGGT-C-AA-CGAC-T-G---CTCTATCGAAATG-ACT-TAAGGAAATCG-CGCAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGGAAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACCT--TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGGGCAGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
finalCons : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAAC-TTNT---ATA------TAA-GCTCTA----AT---AT---CT---ACA----T---TCTC-ACA-NC-GTTTCCCAA---CC-A-T-----TTTACAACAG-----------TGGT-C-AA-CGAC-TGG---CTCTATCGAAATG-ACT-TAAGGAAATCGCG-CAAAG--CGTTA-TCG-CGCTG-TGG-TACAAT-AC-----ACAT------T---ACATATCCA---A-CAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TG-ATGACGAGC-A--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGG-AAAGTTGG--TACA--GA-G-GG-ATTG-AATA-TGAATGGACA-------AGT-GGTGCTATTGTGCCACAGGAACT---TATTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GC-TTCTGGTGATGG--AGGGAAATGG-AA-CTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACAAG------AATTG--ATATTTACA
Alignments
lowQualScore : 111 1111 11111 1 1 1111111111 11 1 1111111 111 222 111 1 111 111 22 222222222 111 11 22222222 11
lowQualScore : 9 3 6 3 4 44 5555 3 3 5 6 2 6666 33 7 6666 555 2 2 6666 9999999 555 6666 555 2 3333 2 555 2 5 22222 2 4 2 33 2 44 333 6 44 2 8 2 5 44 44 4 3 3 3 3 3 77777 3333333333 3 555 555 33 4 4 66 4 0 4 66 4 00 666 0 1 0 5 66 66 5 5 1 5 5 8888888 5 88 111 000 6 88 7 6 6 3 8 8 0 999 3 3 6 2 66 99 5 5 5 5 5 000 1 3 77 5 5 6 888 99 6 6 6 6 6 6 44 666666666 111 99 6 6 99 7 6 6 8 11 8 00000000 0 11 0
lowQualScore : . . . . . .. .... . . . . . .... .. . .... ... . . .... ....... ... .... ... . .... . ... . . ..... . . . .. . .. ... . .. . . . . .. .. . . . . . . ..... .......... . ... ... .. . . .. . . . .. . .. ... . . . . .. .. . . . . . ....... . .. ... ... . .. . . . . . . . ... . . . . .. .. . . . . . ... . . .. . . . ... .. . . . . . . .. ......... ... .. . . .. . . . . .. . ........ . .. .
lowQualScore : 2 1 2 1 0 22 0000 1 1 9 2 7 5555 44 6 1111 000 9 2 1111 5555555 000 1111 000 9 7777 9 000 9 7 99999 9 3 9 99 9 22 888 2 22 9 7 7 4 33 22 4 1 1 1 1 1 77777 8888888888 1 444 888 22 0 4 11 4 7 4 11 4 66 222 1 9 1 0 99 99 0 0 4 7 7 6666666 7 33 777 555 7 55 3 7 7 2 0 0 8 777 3 5 7 5 88 88 7 7 7 7 7 000 7 0 99 7 2 7 555 22 7 7 7 7 7 7 33 333333333 777 22 7 7 22 3 7 7 0 00 0 22222222 8 00 8
consensus : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAACTTTTAT----ATA---A-GCTCTA----AT---A---TCT---ACA----TT---CTC-ACA-NC-GTTTCCCAA---CC-A-T-----TT-T-AC-AA--CAG-TG--GT-C-AA-CGACTGG--C-TCTATCGAAATG-ACT-TAAGGAAATCGC-GCAAAG--CGTTA-TCG-CGCTG-TGGT-ACAATA-C-----ACAT------T---ACATATCC-A---ACAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TGA-TGACGAGCA--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGAAA-GTT--GGTACA--GA-G-GG-ATTG-AATAT-GAATGGACA-------AGTGG-TGCTATTGTGCCACAGGAA-CTTA---TTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GCTT-CTGGTGATGG--AGGGAAATGG-AACTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
Reference ( family-1063 ) : CCATTAACTTC-C-C-C-AATTAAGTA--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCNAACTTNTAT----ATA---A-GCTCTA----AT---A---TCT---ACA----TT---CTC-ACA-NC-GTTTCCCAA---CC-A-T-----TT-T-AC-AA--CAG-TG--GT-C-AA-CGACTGG--C-TCTATCGAAATG-ACT-TAAGGAAATCGC-GCAAAG--CGTTA-TCG-CGCTG-TGGT-ACAATA-C-----ACAT------T---ACATATCC-A---ACAGC---CCTCGC-AC-GTCG-TTT--AAACTATCA-GTCGTACATTT-GGCTTAATGC--TGA-TGACGAGCA--GCTA--GATCTCCCAGACTTAGAAGGGAATGAATGGAAA-GTT--GGTACA--GA-G-GG-ATTG-AATAT-GAATGGACA-------AGTGG-TGCTATTGTGCCACAGGAA-CTTA---TTGACATAGA-TCACT-GTTT-GTTATCTTTG-CCTTTACATACTGTGT-GCTT-CTGGTGATGG--AGGGAAATGG-AACTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATGATCAT--G-ATCACCAT-CAGTTGAAGG-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA-GTACATTCATNA-G-----TT---TTA--ATTTGAAACG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|1 : CCATTAACTTT-C-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGTTAACTT-TAT----ATA---A-ACTTTA----AT---A---TCT---ACA----TT---CTC-ACA-GC-GTTTCCTAA---CC-A-T-----TT------------------GT-C-AA-CGACTG---C-TCTATCGAAATG-ACT-TAAGGAAATTGCCACAAAG--CATTA-TCG-CGCTG-TGGTTACAATAAC-----ACAT------T---ACATATCC-A---ACAGC---CCTCGC-AT-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGTTTAATTC--TGAATGACAAGCAA-GCTA--GATCTCCCAGACTTAGAAGGGAAGGAATAGAAAAGTT--GGTACA--GA-G-GG-ATTG-AATATTGAATGGACA-------AGTGG-TGCTATTGTGCCACAGGAA-CTTAATATTGACATATA-TCACTAGTTTCGTTATCTTTG-CTTTTACATACTGTGT-GCTTTCTGGTGATGATCAGGGAAATGA-AACTGATGAAGAAGGGAATGAA-GTGGATATGAA-CAGTC-TGAT-CGA-TGGAA-TA-TT---TGATAATCAT--G-ATCACCAT-CAGTTGAA-G-CGCGTTAA--TGCT-CAA-ATTTATGC-AAAT-TTGTTTGT-TTA-CA--TACATTCATTA-G-----TT---TTA--ATTTGAAATG-T-ATT--ACTACTCAAAATTA-TGC-AAAATTG-TT--T-ATTTACA-A----G-AATTG--ATATTTACA
gi|10 : CATAAACTTC-CAC-T-AATTCAGTA--ATGATATG-C--ATT-ACC-GAATTG-CCAA----CTTTTGTGCGAACTTTCAT----ATC---T-GCTTTA----AT---T---TTC---TCAATGTTT---TTT-A-G-CC-GTTTCCAAA---CC-AGT-----TT-T-AC-AA--CAA-TA--AT-G-AA-CGATTGA--C-ACTACTGAAATG-ACTATAAG
gi|10 : AACA-ATT-CAAGAGTATCGC-CCAATG--CGTCA-TCG-GGCTG-TATT-ACAATA-CTAATGACA-------T---ATACATCA-A---ATAAC---CCTCGT-Atttaaaactatgtagagctgaaggcccgtgttactgaatagaacaattcaagagtatcgcccaatgcgtcatcgggctgtattacaatactaatgacatatacatcaaataaccctcgtaac
gi|11 : cataaacttccactaattcagtaatgatatgcattaccgaattgccaacttttgtgcgaactttcatatctgctttaattttctcaatgttttttagccgtttccaaaccagttttacaacaataatgaacgattgacactactgaaatgactataagtttaaaactatgtagagctgaaggcccgtgttactgaatagAACTTC-C-AAC-AATTCAGTA--AAATTCTG-C--ATT-ACC-AAATGA-CCAA----GTTTTGTGCGAACTT-TAT----GTA---A-GCTCCA----AT---T---TCTTCAATA----TTAATCTA-AAC-CC-TTTTCCCAA---AC-A-T-----TT-T-AC-AA--CAG-TG--GT-C-AA-TGACTGG--C-TCTATTGAAATG-ACTATAAGac
gi|11 : aAAGAAACCGT-GCAAAG--CGTTA-TCA-TGTTG-TGGT-ACAATA-C-----ACAT------T---ACATATCG-A---ACAGC---ACTTGT-Atttaaaactagttggacctgaagagctattcaagagtatcatcatccaagaaaccgtgcaaagcgttatcatgttgtggtacaatacacattacatatcgaacagcacttgtata
gi|12 : aaacttccaacaattcagtaaaattctgcattaccaaatgaccaagttttgtgcgaactttatgtaagctccaatttcttcaatattaatctaaacccttttcccaaacattttacaacagtggtcaatgactggctctattgaaatgactataagtttaaaactagttggacctgaagagctattcaagagtatcatcatccTCC-T-T-C-AATTCAGTG--AAAATCTA-C--ATT-ATC-GATTGA-CCAA----GTTTTGTGCAAGTTTTCAT----ATA---A-GCTCTA----ATTTCG---TCA---ATA----TT---CTC--CACCC-GTTTCCCAA---CC-ATT-----TT-T-AC-AA--CAG-TG--GC-C-AA-AGACTGG--C-TCTATTGAAATG-ACTATAAGta
gi|13 : cgtaaatgG-TG--AT-C-AA-CGACTGG--C-TCTATCGAAATG-AGT-TAAG-AAATTAC-GCAATG--CATTA-TCG-CGCTG-TAGT-ACAATA-C-----ACAT------T---ACATATCC-A---ACAGC---CCTCGC-AT-GTCG-TTT--AAATTATCA-GTTGTACATTT-GGATTAATGC--TGA-TGACGAGCA--GCTA--GATCTCCCAGACTTAGAAGAGAATGAATGGAAA-GTT--GGTACA--AA-GAGG-ATTG-AATAT-GAATGGACA-------AGTGG-TGCTATTGTGCttaaaaactacatgtatgtgaagctgaagactcgtgtttataccgttggacatgtataagagtattatcatctacgaaatcgtgc
gi|14 : --AGGGAAATGGGAACTGATGAAAATGGGGATGAAAGTGGAA-TGAAACAGTCCTGAT-CGA-TGGGA-TA-TT---TAATGATTAT--G-ATCACTAT-CAGTGGAAG--CGCGTTAA--TGCT-CAA-ATTTATGCAAAAT-TTGTTTGT-TTA-CA--TACATTCATTA-A-----TT---TTA--ATTTGAAACG-T-ATTAAACTACTCAAAATTA-TGC-AAAATTG-TT--TAATTTACA-A----GAAATTGGAATATTTACA
gi|15 : caTC-TGAT-CGAGTGAAAATAATT---TGAT-----T--G-A-CATCAT-CAATTTAAGG-CGCATTAA--TGCTGCAATATTTACG--AAAT-TTGTT-GT-TTA-CAGGTACATTAATAAGG-----TT---TTA--A-TTGAAACGAT-ATT--GCTACTCAAAATTATTGC----ATTT-TTTAT-ATTTACT-GTCCTA-AATTG--ATATTTGCA
gi|16 : CCATTAACTTCTC-C-C-AATTAAGTA--AAAATCTG-CGCATT-ACC-GA-TCAACTTA----GTTTTGT--CAACTTTTAT----ATATAAA-GCT-TA----AT---A---TCT---ACA----TT---CTC-ACA-GC-GTTTCCAAA---CC-A-T-----TT-TCACAAA--AAG-TG--GTCC-AACCGACTGG--C-TCTATTGAAATG-A
gi|17 : GGAATCTT-GCAAAG--CGTTA-TCA-TGCTG-TAGT-ACGATG-C-----ACAT------T---GTATATCG-A---AAAAC---CCTCGT-A
gi|18 : agttgaaggctcgtgaatatactgttgaaaaggtattggaattctaaagtatcatcaaccatCTCC-C-C-T-CATCCAGTA--AAAATCTG-C--ATT-ACC-AAATGA-CGAA----CTTTTATATAAGC-----T----ATA---A-GCTCTA----AT---T---TCTTCAATA----TT---CTC-AAC-CC-GTTTCCCAG---CC-A-T-----TTCT-AC-AA--
gi|19 : cccataaactcccccTTTGTGCAAACATTTGT----ATA---A-GCTCTA----AT---ATTGTCA---ACA----AT---CTC-AAT-TC-GTTTGCCAA---CC-A-T-----TT-TGAC-AA--CAG-T
gi|2 : tatattgacgagtgaccgatttttgCCATTAACTTCTC-C-C-AATTAAGTG--AAAATCTG-C--ATT-ACC-GAATCA-CTTA----GTTTTGTGCTAACTTTTAT----CTA---A-ACTTTA----AT---A---TCT---GCA----TT---CTC-ACA-GC-GTTTCCTAA---CT-A-T-----TT-TCAC-AA--CAG-TG--GT-C-AA-CGACTGG--C-TCTATCGAAATG-ACT-TAAGatctattgaaataaataaaaac
gi|2 : -TTTAT-GAAAAG-A-T-CCATGAAATCGC-ACAAAG--CATTA-TCG-CGTTG-TGGT-ACA-----------------------------TCC-A---ACAGC---CCGCGC-AC-GTCG-TTT--AAACTATCA-GTTGTACATTT-GGCTTAATGC--TGA-TGA----------------TTTCCCAGACTTAGAAGGAAATGAATGGAAA-GTT--GGTACA--GA-G-GGGATTG-AATAT-GAATGGACA-------AGTGG-TGCTATTGTGCCACAGGAA-CTTA---TTGACATAGA-TCACT-GTTA-GTTATCTTTG-CTTATACATACTATGT-GCTT-CTGGTGATGAGCAGGGAAATGG-AACTGATGAAGATGGGGATGAA-GTGGAAATGAA-CAGTC-TGAT-CGA-AGGAA-TA-TT---TGA-GATCATCCG-ATCA-CATCCAG-TGA--G-CGCGTTAGACTGCG-CAA-ATTTATGC-AAAT-TGGTTTGTGTTA-CA-GTA-A--CATCG-A-----TTGAATTA--ATT--GAATG-TAATT--ACTACTC--AATTA-TGC-AGAtttaaaattatgtggaactaaaggctcatgtttattttatgaaaagatccatgaaatcgcacaaagcattatcgcgttgtggtacatccaacagcccgcgcacgtcgtttaaactatcagttgtacatttggcttaatgctgatgatttcccagacttagaaggaaatgaatggaaagttggtacagaggggattgaatatgaatggacaagtggtgctattgtgccacaggaacttattgacatagatcactgttagttatctttgcttatacatactatgtgcttctggtgatgagcagggaaatggaactgatgaagatggggatgaagtggaaatgaacagtctgatcgaaggaatatttgagatcatccgatcacatccagtgagcgcgttagactgcgcaaatttatgcaaattggtttgtgttacagtaacatcgattgaattaattgaatgtaattactactcaattatgcaga
gi|20 : ccattaacttctcccaattaagtgaaaatctgcattaccgaatcacttagttttgtgctaacttttatctaaactttaatatctgcattctcacagcgtttcctaactattttcacaacagtggtcaacgactggctctatcgaaatgacttaagtttaaaattatgtggaactaaaggctcatgtttatGAAATCGT-GCAAAG--C-TTA-CCTTCGCTG-TGGT-ACAATA-C-----ACGA------T---ACATAT-C-G---ACAG
gi|3 : acCCATTAACTTC-T-C-C-AATTAAGTA--AAC-TCTG----ATT-ACC-G--TCAGCTTA----GTTTT-TGGCAACTGGTAT----ATG---A-GTATTA----AT---A---TC----ACT----AT---CTC-ACA-GCCGTTTCCAAG---CCCA-TG----TT-C-AC-AAGACAG-TGTGGT-C-AAACGACTGG--CCTCTATC-AAAT--ACT---AAGAAATTG--ACAAAG--CATTA-CGG-CG-TG-TAAT-AC-----C-----ACATA-----T---ACAGGTAC-AGTGACAACACGCCTCGC-AT-GTCG-TTTTAAAACTATCA-GTTGTACATTT-GGCT-AATG---TGA-TGACGAGCACAGCTA--GAT-TCCCAGA-TTAGAAAG-AATGAATG-AAA-TTC--GGTACA--GA-G-GGGATTG-AATA--GAATGGACA-------AGTGGGTGC-ATTGTGCCACAGGA--CTTA---TTGACATA---TCACT-GTTT-GTTATCTTT---CTTTACATAC-GTGTCGCTT-CTGGTGATGG--AGAAAAATGG-AACTGATGAGAA--GGGA-GAA-GT-GATATGAA-CAGTC-TGAT-CGA-T-GAA-TA-TT---T-ATAATCAT--GCATCACCAT-CAGTTGAAAGCCGCGTTAA--TGCT-CAT-AATTATGC-AAAA-TTGTTTAT-TTC-CA-A-ACATTCATAA-AAAAATTT---TTG--ATTTGAAACG-T-ATT--AC-ACTCAAAATTA-TGC-AAAATTGTTT--T-ATTTACA-A----G-AA-TG--ATA-TTACAacattcgta
gi|4 : TTAA-TTC-T-C-C-AATT-AGT-----AATCTG----A-T-A-C-AAAT-A-CTTA----GTTTTGTGTCTATTTGTAT----ATA---G-ACTTTA----A----A---TAT---TCA----TT---T----CA-GC-GTTT--TAA---TC-A-T-----TT-T-AC-AA--CTGATG--GT----A-TG--TGG--T-TCTAT-GAAATG-ACT-TA---GAATTGC-GCAGA-----TTT-GCG-CGTGA-TGGT-A-AATA-------AAAT------TTTAATATATCCAA---ACAG------TGGG-GC-GTCG-TTT--GAACTA-CA-GTTGAATATGA-GAGTTGA-GT----A-TGGTGAGAA--ACAA--GATAGTTAGGATTTAGAAGAG-CTGATTGG-AA-GTTGGGGTA-A--GA-G-GG-ATTG-AATAT-G-ATGGACAGGGGATGAGTGG-T--TATTGTTGCA-AGGAA--TTA---TTGACATAG--TCA-T-GTTT-GTT-TCTTTG-CC-TTA-ATACTGTGT-GCTT-CTGGTGATGG--GAGGGAATGGAAACTGATGAAGATGGGGATGAA-GTGGGAATGA---AGTC-TGATAGGA-TGGAA-T--TT---TGATGAT--T--G-AT----AT-CAGTTGAAG---GCGTTAA--TG-T-C-A-ATT--TGC-AAATATTGTTTGT-TTAGCA--TAC-TTCAT---G-----TA---TTACTATTTGAAAAG-T--TC--AATACTC---ATTA-TGCGAAAAATG-TT--T-ATTTACAGA----G-ATTTA--TTATTTAt
gi|5 : atCCATTAACTTCTC-C-C-AATTAAGTA--AAAATATG-C--ATT-CCC-CAATCA-CTTA----GTTTTATGCTAAATTCTTT----GTA---A-GTTTTA----AT---A---TCT---ACA----TT---CTC-A-A-TT-CTTTCCCAATTTCC-A-T-----TT-TAAC-AA--CAG-TG--GT-C-AA-CGACTGC--C-TCTATTGAAATG-ACa
gi|5 : AAATCGT-CCAAAG--CATTA-TCG-CGCTG-TGGT-ACAATA-C-----ACAT------T---ACTTATCG-A---ACAGC---CCTCGT-AC-ATCA-TAT--AAACTATCA-GTCGTACATTT-GGCTTCATAC--TGA-TGACAATCA--GCAA--GATCTCCCAGACTTGGAAGGGAGTGGATGGAAA-GTT--GGTGCATTG--G-GG-ATTT-AATAT-GA----ACA-------AATGG-TGCTATTGTGTCACAGGAA-CTTA---TTGACAT------ACT-A------TA----TG-CTTCTA------GT----------GATGA-GC--AGGGGAATGG-AACTGATGAAGATGGGGATGA---------------AGTC-TGAT-CGA-TGAAA-TA-TTTGATGATGATCAT--G-ATaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccaaatcgtccaaagcattatcgcgctgtggtacaatacacattacttatcgaacagccctcgtacatcatataaactatcagtcgtacatttggcttcatactgatgacaatcagcaagatctcccagacttggaagggagtggatggaaagttggtgcattggggatttaatatgaacaaatggtgctattgtgtcacaggaacttattgacatactatatgcttctagtgatgagcaggggaatggaactgatgaagatggggatgaagtctgatcgatgaaatatttgatgatgatcatgatgatgacaatgatcattttattactggtt
gi|6 : ccattaacttctcccaattaagtaaaaatatgcattccccaatcacttagttttatgctaaattctttgtaagttttaatatctacattctcaattctttcccaatttccattttaacaacagtggtcaacgactgcctctattgaaatgacaataagtttaaaactatgtcgagttaaagactcgtgtttattctgtttgaaaagtattgaaatgaatagagcttttcaagagtaccatcatccaccCCATTAACGTC-T-T-C-AGTTAAGTAAAAAAATCTGAC--ATTAACCAGAATCA-CTGA----GCTTTATG-TAACTTTTAGGAGAGTA---ACGCTATATAATAT---A---TCT----CA----TT---TTCAACAGAC-GTTTCTTAG---CC-A-TC----TT-T-AC-AA--CAG-TG--GT-CAAA-CGACTAGACT-TTTATTG-AATGTACT-Tgatgacaatgatcattttattactggtt
gi|6 : GAAATCGC-ACAAGA--CATTA-TTG-CGCTG-TGGC-ACAGTA-C-----ACAT------G---ACGAATCC-A---ACAG----CCTCGTAACGGTCGTTTT--AAATCATCA-CTCGCACATTTGGGCTTAATGCTTTGG-TGACAAGCA--GCTAGGGATCT-CCAGACTTGGAAGGGActatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatgaaatcgcacaagacattattgcgctgtggcacagtacacatgacgaatccaacagcctcgtaacggtcgttttaaatcatcactcgcacatttgggcttaatgctttggtgacaagcagctagggatctccagacttggaaggga
gi|7 : ccattaacgtcttcagttaagtaaaaaaatctgacattaaccagaatcactgagctttatgtaacttttaggagagtaacgctatataatatatctcattttcaacagacgtttcttagccatctttacaacagtggtcaaacgactagacttttattgaatgtacttctatttttaaacatgtgtagtgaaggcttctgatttattttgttgaaaggtaaagcttttcaagagcatcatcaatactatCTATAAACTTC-T-CTC-AATGAAATG--AAGATCTG-C--ATT-ACC-GAATTA-ATTACCACGTAGTGTGCTAACTTTTAT----ATA---A-GCTCTA----AT---A---TCT---ACA----TT---CTC-AAT-AC-GTTTCCCAA---CC-A-T-----TT-TAAC-AA--CAG-TG--GT-A-GA-CGACTTG--C-TCTATTGAAATG-ACTATAAG
gi|7 : -AT-GTCG-TGT--AAAATATCA-GTCATACATTT-GGCTTCATGC--TGA-CGACAAGCA--GCTA--AATCTCCCAGACTTTGAAGGG-GTGGATGGAAA-CAT--GGCACA--GA-G-Gtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattatgtcgtgtaaaatatcagtcatacatttggcttcatgctgacgacaagcagctaaatctcccagactttgaaggggtggatggaaacatggcacagagg
gi|8 : ctataaacttctctcaatgaaatgaagatctgcattaccgaattaattaccacgtagtgtgctaacttttatataagctctaatatctacattctcaatacgtttcccaaccattttaacaacagtggtagacgacttgctctattgaaatgactataagtttaaaactatacaaaatataaagctgaaggcttgtgtttatatcgttggaaagataatgaatagagctgcttgagagtatcgtcatccaaaaaatcgtacaaagcattGAAAATCGC-ACAAAAAACATTAATCG-TGCTGATGGT-ACAATA-C-----ACAT------G---ACATATCC-A---ACAGC---CCTCTC-AC-GTCG-TTT--AAACTATCATGTTGTGCATTT-GGCTTAATGC--TGA-TGACGAGCA--GCTA---ATCTCCCAGACTTAGAAGAGAATGAATGGCAA-GTT--GGTACA--GAGG-GG-ATTGAAATAT-GAATGGAC--------AGTGG-TGCTATTGTGCCACAGGAGCCTTA----TGACATAGATTCACT-GTTC-GTTA-CTTTGCCCTTTACATACTGT
gi|9 : atgtggagctgacaaggctcgtgtttattttgtttgaaagttaaaggcgtttcaagagtatcatcatccatCATAAACTTC-C-C-CCAATTCAGTA--AAAATCTA-C--ATT-ACC-GAAT--------------------GAACTTCTAT----ATA---A-GTTCTA----AT---T---TCTTCAATA----TT---CTC-AAC-CC-GTTTCCCAA---CC-A-TCAGTGCT-T-----A--CTG-TG--GT-C-AA-CGACTGG--C-TCTAT--AA--G-ACTCTAAG
gi|9 : AAATCGT-ACA--G--TGTTA-TTG-CACTG-TGGT-ACAATA-C-----ACATTATATAT---ACATATCA-A---ACAGC---CCTCGT-AC-tttaaaactatgtggagctgagggtgtgcgtttatataccattagaaagctattcaagagtatcatcatctacaaaatcgtacagtgttattgcactgtggtacaatacacattatatatacatatcaaacagccctcgtaca