lowQualScore : 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 22222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 4 1 4 2 2 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 1 1 44444444444 66666666666666 11 333 111 2 4444 2222 1 22 55555 222 1 11 44444444 2 33333333333333333333333333333333333333333 333 333 333 333 1 222 1 3333 22 6666666666 4 1 1 2 222 1111 33333333 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333 1 22222222 11 88888888888888888888888888888888888 1 444444 2 2222 222
lowQualScore : 6 0 7 0 0 0 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 4 5 5 2 00000000000 44444444444444 4 88 3 444 3 111 1 6 3 5555 9999 3 44 7 00000 333 7 2 88 55555555 0 33333333333333333333333333333333333333333 000 555 555 4 444 5 6 222 5 6 7777 66 3 7777777777 66 3 4 7 6 0 6 0 3 0 0 6 2 1 3 000 0 6666 1 3 55555555 2 111 66666666666666666666666666666666666666666666666666666666666666666666666666666666 6 8 5555555555 6 99999999 11 55555555555555555555555555555555555 66 0 4 111111 3 5 3 3 77 8 5 8888 4 0 222
lowQualScore : . . . . . . . ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . . . ........... .............. . .. . ... . ... . . . .... .... . .. . ..... ... . . .. ........ . ......................................... ... ... ... . ... . . ... . . .... .. . .......... .. . . . . . . . . . . . . . . ... . .... . . ........ . ... ................................................................................ . . .......... . ........ .. ................................... .. . . ...... . . . . .. . . .... . . ...
lowQualScore : 0 0 0 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5 0 5 0 5 77777777777 77777777777777 7 33 7 333 2 000 0 7 7 7777 3333 3 33 3 77777 333 3 0 00 55555555 0 00000000000000000000000000000000000000000 000 000 000 0 000 5 0 000 5 0 5555 00 0 0000000000 55 0 0 3 7 0 0 7 2 0 2 0 5 5 2 000 2 5555 2 2 88888888 0 000 00000000000000000000000000000000000000000000000000000000000000000000000000000000 7 0 0000000000 4 00000000 00 00000000000000000000000000000000000 99 0 0 777777 6 5 6 6 99 8 7 9999 0 8 888
consensus : TTTCCATATCA-TAAATATAAGACCTGGTGTCTGTGTNTGCCTATTCAGTNAG-AGAANNTTGTGAAAGAC-ATNTGTTCACAATCACCTTTTACTGGTGTCTNATTGANGAGCACAAGCTGTCTAAACAGTGAAAGNANCAGTCGTGTTCCAGGCCAAAGCATGCANGCGANACNGCTCTNNCATAGTATGCAT-AATGAAACATAGGCGNCGAAAA-ATCGACAAAG---GT-----AAACTC-G-CAGCGT--GT-AATTTTTAT-G----ATTTAAGT-AAAGCA--TTT-ANAC--GGTCAA--TCAT-ATACTCTGT----CAGAT-TTCCAANCT---TTTGCGG-ATATGTGAAAAT---CNC-CAA--GTTT-----TCTGG-A--TNTAC--C-TA-AT-GCT-AGATC--G-CAATGTG------TCTAATGG-AAAGGGTC-ATC--TCGGAA-----GAANA---AGA--------T---GTTACAATCGGAGTCC-----ACCCTCAAGGC-TC-TATA-T--GGTCCT-----TT-TTTTTTAT-T---CTTTT-TG--TA--GATGAC--GTC-C-AATG-TTT--AAACA-TCTAC-A--GTCAATATG-TAT-C---AC-----GATAA-CCNCGCAAG-TG-TTT---CTGAT--AAGTCTTTGG-A--GTGAA-GAGAAAGAATT--ACA-GGACGATCTTTTA--A-----T-TCTAT-TGAATGGATGC--AAA-AAAA---CAAACCT-C--AC-TACAAA-TTT-GAAGAAAACACG-TG------TA-TG--TTAAT---TA-GGAGC-TC-C-AAAATTAT--GAAA-TGTA-AAAACTGTGTTGAAATG-AAGGGG--------AAAATTTCTT-AGAAAA-TGTA-AATTGTGC--AAACTT-CTGGGTGTT-TATATTGA-----CTG-AATGTCTTACG--TGGTC--TCAT-AC--ACG---G---A-TG--TTT--AT-NCAA-NAACACT-NANG-CAGAAACTAGGCGTTTTAANGTA-----GATTG-GTAA---T--TCGATGTCCAA---AGA--C--ACTAC--TCGAA---AT-T-ATACAA-TACCATAGTAT---------CCACATTAATGCATGTCTTGANCNTATGTAGTTGTATCGGTATTGGGCATGTATGCCNAGTAANNAAACAATACCATCACGGNATCAATACATNGCTNCTTAAATTACANAACAAGAGCAGNAAGGA---TC--ATT-TTAGACAT-C----------AGAGNACC--TCGNTCAG--TGTCAACTT-T-AACACGTTATNA-AA-CTTGAGATGGATGCCCA-TGCCA-GACTATTTT-ATATATCG-AG--AAAT---TATTTCTTATCTTCAAGGTTTTACATTGGTGTAATGACACCAAGAGTATTTGTAAAATTGTTTGAATGTTTTTNGATTTGTGAGTTGTAATGAGGATATCCACAGATAGGAATACAAGACAAAGTCTTGTTNGTAAATTTTATTTACGTTTACAAAAGCCAAAAACCAGAGCATTNTCAANAGAA-TCTTCTTATCATTNCGGCAGCAATNTTNTGGAATTCATTGCCAGATTT-TA-TAGAGAATGT-AGAACTTTGA-CTTCTTTTAGATCAGCCCTACCTTNAAACATTATTTTGATAC-------TCAATA-A-TACTC-AA----CTA--GTTCT-TAT--CT--GNA-------------------------TATA--GAA-----TAT--------TC-TGTGATAATTT-CAT----------GTTGTTGT--------GG--TGTAT-----G-A---TTT--TATATG------TAT---TATA--TGT-TTAAAGACAGGACCACAATG-TAA----AAC-TAGT-TTT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGGTCATT-TTATTAT
Reference ( gi|1 ) : TTTCCATGTCAATAATTATA-GACCTG-TATCTGT-TTTGCCTATC--ATAAGCAAAATTTTG-GAAAGACGATGT-TTTACA--CACTTTTTAC-GA-ATTTGAGTGAA-AACATAAACT--TTAA-CAG----AACATCAGTCGGGTTTCAGACCAAAACATTCATGTGAAACTGCT-TTACATAATAT-CATTGATGAAA-AT-GGC-TTGAAAACATTGATAAAG---GT-----AAACTTTA-CAGGGT--GT-AATTTTTATCG----ATTTAAGC-AAAGCA--TTT-ATAC--AGTCAA--TCATGATGTTCTGTTGCACAGAC-TTCTAATCT---TTTGTGATATATGTGAAAATA--CTTTCAA-AGTTT-CAC-TCTAAAAAATGTAT--C-TACAT-GCT-AGATC--A-CAATGTG------TCAAATGG-AAAGGGTC-ATC--TCGGAA-----GAAGA---AAA--------T---GTTACAATCGGAGTTC-----GCCTTCAAGGC-TC-TATACT-TGGTCCT-----TT-GTTTTTAT-T---CTTTT-TG--TA--GATGACTTATC-TAAATG-TTTG-AAGCA-TTTACTA--GTCAATATA-TATGCAGGAT-----GATAA-CCACGCAAGATG-TT----CTGAT-GAAGTCTTTGG-A--GTGAA-GAGAAAAAATTA-ACA-AGACGATCTTTTA--A-----T-TCTAT-TGAATGGATGC-CAAA-AAAA---TAAACTT-C--AC-TATAAA-TTT-GAAGAAAACACATTG------TA-TG--TTAAT---TAGGGAACTTCTCAGAAATTATT-GAAA-TGTA-AAAACTTTGTTGTAATGTAAGGGGA-------AAAATTTCTT-AGAAAACTGTA-AATTGTGCT-AAACTT-CTGGGTGTTATATATTGA-----TTG-ACTGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--AT-CCAA-GAATACT-TAGT-CAAAAACTAGGTGTTTTAAGGTA-----GATTG-GTAA---T--TTGATGTCCAA---AGA--C--ACTAC--TCAAA---AT-T-GTACAA-TACCATAGTATCCCCCCCTCCCACATTA----------TAAACTGAT-T-GTTGTA-CGGTAT--GGCATG-ATGCCCAGGAAACAAACAA-A-TA-CACTGTATC-ACGTA-GGCTTTTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATTGTTAGACAT-C----------AGAGTACC--TCAGTCAGTTTGTCAACTT-T-AATAT-TTATCA-G--CTTGAGATGGATGCCCA-TG-CA-GACTATTTCAATATATCG-G---AAAT---TATTTCTTATCTTCAAAGTTTTACATTAGT---ATGACACC-AGAGTA------------TTT--------TTCG----GTGAG-----ATGA-G-TATCCACA---AGAAATACAAGACAAAG---TGTTAGTAAATTTTATTTATGTTTACAAAAGCCAGAA--C-GAATATTTCCAAAAGAGTTCTTTT--TCATTTCAGCAGCAATTTTATGGAATTCATTGCCAGATTTATATTAGGGAATGT-AGAGCTTTGAACTTCTTTTAGATCAGCCCTACCTTAAAACATTATTTTGATAC-------TCGATA-A-TACTC-AG----CTA--GTTCT-TAT--CT--GTA-------------------------TATA--GAA-----TAC--------TC-TGTGATAATTT-CAT----------GTTGCTGT--------GG--TGTAT-----GCA---TTT--TATAT-------TAT---CATA--TGT-TTAAAGACAGGACCACAATG-TGA--T-AAC-TA-T-TTT-TAT-AAACTAAATCGTTGCAATCCTGT-TTAAATAAAGGTCAT--TTATTATA
gi|2 : TTTCCATATCA-TAAATATAAGACCTGGTATCTGTGTTTACCTATTCAATAA--AGAAGTTTGTGAAAGAT-ATGT-TT-ATA--C-CCTTTTAC-GGTGTCTG-TTGAAGAACA-AAGCTGTTTAAACAAT---AGCATCAGTCG--TTCCAGACCAAAA--TGCATGCGATACTG-T-TGACATAATATGCAT-AAT--AA-ATAGGCGTTGAGA-CAT-GCTAAAG---GTGGGGAAAGCTTGGGCAGCGTTTGTTAATTTTTATTG----ATCTAAGC-AA-GTA--TTT-GGACCCAGTCAAGATCA-GATATTTTGT-GCACAAGT-TTC--ATGC---TTTGCGG-ATATGTTGAAATGGGCCCTCTA-----------TCTGACA--TGTG------A-AT-GCTGAGAGT--G-CAATGTGACCGCCTCTAATGGGAAAGGGAC-AGC--TCGGAAAGAGAGAAGAGGGAAAGTGTATACT---GTTACAATCTGAGTTCCTCAAACCCTCAAGCG-TC-TAT--TATGGTCCTCGTAATT-TTTTTTGT-T---CTTTTATGGGTAATGATGACT-ATCCTAAATG-TTTTTAAACAATCTAC-A--GTCAA--------------------GATA---CTTGCAAG-TG-TTT---CTGAA-TAAGTCTTTGG-AATGTGAA-GAGGAAGAAG-----A-GGAC-ATCTATAA--A-----TGTATATGTTAATGGATGC-AGAA-AAAA---CAAAC-T-A--ACTTATAAATTTT-GAAGAAAACAAAATG------TA-TG--TTTAA---TA-GGAGCATCACAGAAAGTAT---GAA-TTTAGAAAACTGTG-TGAAATGGTAGGTG---------AATTTTCTT-AGAAAA-TGTA-AATTGTGC----AC-T-CGGGATGATTTATA-TGA-------G-AATGTCTTACATCTCGTCAATCAT-AC--ACG---G---GTTGATTTT--ATGTCAA-CAACATT-GATG-C--AAACTAGTGGTATTAAAGTAAGTATAATTG-ATAAAATT--CTGAGGTCCAAAACAAG--C--ACT-C--TTGAA---ATATAATACAATTACCATAGTAT---------CCACA--A----------TGAATT-AT-TAGTT-TA-CGGTAT---GCATG-A-GCCAAG--AACAAACAATACCA-CATGGTATCAATACA-GATTGCTTAAA-TACAAAAC-AGAGCAGGAAGGA---TCAAATT-TTAGACACACCTTACAAAGAAAAGCACC--TCGATCAATGAGTACAC-T-T-AACTC-TTATAA-AATCTTGAGATGGATGCCCATTT-CAGGACTATTTTAATAC-TCG-AGACAGATCGATATTT-TTGTCTTCAAG--TTTACA-TGGTGTAATGACACTAAGAGTATTTGTAAAATTGTTT--------TTTG----AT-AGTTGTAATGAGG-TATCCACAGATAGGAATATAAAACAAAGTCTTGTTTGTAAA-TTTA-TTACG-TTAC-AAAGCCAAAAACC-GAGCATTGTCAACAGAA----TCT--TCATTAAGGCAGCAATTTTTTGGAATTC-TTG-CAGATTT-TA-TAGAGAA-GTAAAAAATTTGACCTTCTAT--AATCAG-CCTAACTTCCAACATAA--TTGGTAC--------CAATATACTACTC-GT----CTAATGTTC--TAT---TGAGAA-------------------------TATA--AAG-----TAT--------TT-TGTGA
gi|4 : aG-TGTCTGT-TGTGCCTAT---GTCAG-AAAATATTG---AAGAC-ATCTGTTCACAATCA-TTTTTACTGATATCTCA-T-AC-AGCACAA-----CTAA-TAGTGAAAAAAACAGTCATGTT-CAGGC---AGCAT-CAAGCGAGACAGCTCTTTCA--GTAT------ATGAAACAT-GGT-ACGAAAA-ATCGACAATG---AG-----AAACT--A--AGTGT--CT-TATTTGTA--G----ATTTAAGT-AAAGCT--TTTGACAC--GGTAAA--TCATCAGG----ATT-----GAC-TCCCAAACTATGTTTTTGGAATATGTGAAAAT---CATACAATTGTTT-----------AAATATACTGT-TAAATAGC----ATC--AGCAATGTG------TTTGAT-G-AATGGATG-TTCAGTCAGAT-----AAATA---CGA--------TAGGATGACAATAGGAGT-------ACCATAAAGGCGTCAAATA----GGTCCT-----TG-TTTTTTATAT---CTCTA-TG--TA--AATGAC-TACC-C-GCTG-CTT--ACACACTCTAC-A--GTCCATATG-TATGC---AT-----G--AA-CACCGCAAGTTGTTT----CGGATAAAAGTT----G-A--TTGTA-TAAAAGCAATT--ACATAGTGGA---TTTA--AAATACT-TCTG---GAAT-GATG---AGATAAAA---CAAACTTAC--A-----AAA-TCT-TAACAAAA-ACG-TG------CAGTG--ATAATATGTACAGAAT------AAAGTTA-A-GAAATTGCA-GAAA--GTATTG--ATG-AAGTGGATGATATCACAATTT-----GAAAA-TGTATCTTTGTGC--AAATTA-CTTGGTGTT-TATATTGA-----CTA-GATG-CTCACT--TGGTC--TGA--AC--ATGCTTG---A-AA--TTTTAAA-AAAA-AAAAACTGCAAG-CAAAA--TAGGCGTTTTAATGTT-----GATTACG------T--TCAATGTACAC---CGA--CTTTTTAC--TGAAATTTTT-T-ATACAA-T
gi|3 : caAAAAATTAA-AAAGAGGGT-----AAATTCTC-C-------GC-AATGTTTATGGTCTAATTAAAGTTAAAACAGGTCG-ATAA--AA-CAA--TTAT--TACTCTGC----CAGATATTACAGGCT---CCTGTCAT-CGT-TGAAA-----CT---AA-AGTTTTCACCTCTAGG---CTTAT--CCTACAT-GCT-AGATCTAA-CA--GTG------TCAAATGG-AAAGGGTCCATC--TCAGAA-----GAGAA---AGA--------T---GTTACAATCGGAGTCC-------CCTC--GGC-TC-TATATT-GGGTCCT-----TTTGCTTTTAT-TATTCTTTT-TG--------------GTC---AATGCTTTG-AAGCA-ATTCCTACAGTCAATATACTAT-C--GACTCATCGATAATCCACGCAAGATG-TTTTTTCTGAT--AAGTCTTTGGCAT-GTGATTGAGAAAGAATTACATA-GTACGATCTTTTATAA-----T-TC-AT-TGAATGGATTCGCAAA-AAAAAAATAAACCT-CGCAC-TACAAA-TTTTGAAGAAA-CACATTCACAAATTA-TGGATTAAT---TAGGGA-CTTCTCTAAAAT-ATTCGAAA-TGTA-AAAACTTTGTGAAAATGTAAGGGG--------AAAATTTCTTCAGAGAA-TGTA-AATTG-GCTAAAACTTACTGGGTGTT-TATATTGAAATGTCTGAACTGT-TTGCG--TGGTC--TCATCACTTACG---GGAAA-TGT-TTT--AT-GCAAGGAACACT-TAGTCCAGAAACTAGGTGTTTTAAG--A-----GATTGAGTAA---TTCTTTATGTCAAA---AGAAGC--ACTACCTCCAAA---AT-T-TAACAAGTACCATAGTAT---------TCACATTAATGCATGTCTTAATCATATGT-ATTGTATCGGTATTGGGCATGTATG--CAGTAACAAAACAA-A-TATCACTAGATC----TATTGC-TTTTAAATTACATAACAAGA-CAGCAAGGAAATTC--ATTTGTAGACAT-C----------A-ATAACCGATCAGTCAG--TGTCAACTC-T-
gi|10 : AGAA---TCC-ATT-TTAGACAT-C----------AGAGTACC--TCATTCA--TTGTCAACTT-TTAATATGTTATCAAG--CTTGAGATGGATGCCCA-TGCCA-GACTATCTC-ATATATCGTA---AAAT---TA-TTCTTATCTTCAAAGTTTTttata
gi|14 : TGTCAACTTGT-AACATGTTATTA-AA-CTTAAGATGGATGTCCA-TGTCA-GACTATTTT-ATCTATTG-GA--AAAT---TATTATGTACTTTCA
gi|5 : CATT-GT---ATGACACC-AGAGTA------------TTTGAATGTTTTTAGATTTGTGA------ATGA-GATATCCACA---AGAAATACAAGACAAAG---TGTTAGTA--TTTTATTTACGTT-ACAAAAGCCAAAA--CAGAATATTT-CAAAAAA--TCTTTTTATCATTTCAGCAGCAATGTTATGGAATTCATTGCCAGATTT-TAATAGAGAATGT-GCAACTGT-AACTTCTTTTAGATCAG-CCTATCTT-AAACATTATTTTGATACTCAATAGTCAATA-A-TACTC-AA----GTG--TTTAT-GAT--CT--CTATTGAGGTGCATTTAGTTCTTATCTGTATATAGAA-----TA---------TC-TGTAATAATTT-CAT----------GTTG-TAT--------GA--TGTAT-----G-----TTT--TAT----------------ATA--TGT-ATAATTAT---------ATGTTAA--TAAAC-TAGT-TCG-TA--AAACT-AATTG-TGCAATCCTGT-ATAAATAAAGGTTATTGTTATTAT
gi|6 : AATTCATTGCCAGATTT-TATTAGGGATTGC-AGAACTTTGA-CTTCTTTTAGATCAGCC-TACCTTAAA-CATTATTTTGATAC-------TCGATA-A-TACTCAAG----CGA--GTTCT-TAT--CT--GTA-------------------------TATA--GAA-----TA---------TC-TGTGATGATTT-CAT----------GTTGTTGT--------GG--TGTAT-----G-A---TTTA-TATATATGTATATAT---TGTA--TGT-TTAAAGACAGGACCACAATG-TA-----AAC-TAGT-TTT-TAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAGGTCATTATTATTAT
gi|7 : GAATGT-AGAACTTTGA-CTTCTTTTAGATCGGCC-TACCTTGAA-CATCATTTTGACAC-------TCAATA-A-TACTC-AAATTTCTATGGTTAC-TAT-------TA-------------------------AAAA--GAG-----TATAGTTGTTATC-TGTGATAATTTTCAT----------GCTG-TGT--------GA--TGTAT-----G-----TTT--TACATGTATA--TATG--TATA--TGTGTTAAAGACAGGACCACTATG-TGA-----AC-TT-TATTG-TAT-AAACTAA-TTGT-GCAATTCTGT-TTAAATAAAAGTTAT--
gi|8 : A--ATTTT-AAT--TT--GCA-------------------------TATG--GAACGGAATAT--------TCCTATAATGATTT-CATATCTTAACTGGTTCCTGTAATCTTCAGGATTATATAATTGGCAAAGTTTAATATATG------TAT---AATA--TATGTTAAAGACAGGACCACGATG-TAA----AAC-TAGT-TTG-TAT-AAA-TAAatgt
gi|9 : acaatacatggagacaTTCTGTATTACC--GAA-------------------------TACA--GAA-----TA---------TC-TGTGATAATTT-CAT----------GTTGTTGT--------GG--TGTAT-----G-A----TT--TATATG------TAT----ATA--TAT-TTAAAGACAGGACCACAATG-TA-----AAC-TAGT-TTT-TAT-AAACT-AATTG-TGCAATTCTGG-TTAAATAAAGGTCATTATTATTAT
gi|11 : TT--TATATG------TACTCGCATAGATGT-TTAAAGATAAGACCACAA------------C-TAGT-TTT-TAT-AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGGTCATTATTATTATt
gi|13 : atgtgcagatataatgaT--TATAT-------TGTA--TATA--TGT-T--AAGACAGGACCA--ATG-TTA--A-AAC-TAGT-TTT-TATAAAACT-AATTGTTGCAATACTGTCTTAAAAAAAGTTCAT--TAATTATt
gi|12 : ATATG------TAT----ATA--TGT-TTAAAGACAGGACCACAATG-TA-----AAC-TAGT-TTT-TAT-AAAC-AAATTG-TGCAAACCTGT-TTAAATAAAGGTCA---TTATTAtat
gi|16 : aatgcaaggttaataACAGGACCAAAAGG-TAA-----AC-TA-G-TTTGTA--AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGGTTA---TTATTatatt
gi|15 : ACAGAACCACATTG-TAAACT-AGTATA-T-TTT-------ACTAAATA--TGCCACCCTGT-CTAAATAAAGA--AT--TTATTAT
gi|17 : -TA-T-TTT-------ACTAAAT-GT-GCCATCCTGT-CTAAGTAAAGA--AT--TTATTAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111111 11111111111111111111111111111111111111111
lowQualScore : 2 1 2 333333333 2 22 333333 2 2222222222 1 44444444444444444 1 1 2222 333333 33333333333 1 1 111 22222 4444444444444444 22 11 1 22 7777777777777777777777777777 1 22222 2222 1 2222222222222222222222222222222222222222222 1 1 11 1 222222 11 1 11 1 1 6666666666666666666 44444444 2222222 22222 11 11 1 1 555555555555555555555555555555555555555 1 777777777777777 1111 2222222 111 2222 1 33333333333 11 11 2222222 11 11 33333 2222 111 1 1 6666666666666666666666666666666666666666666666666 22 1 1 2 1 2222 1 1 1 22 1 1 1 333333 1 11 11 22 11 4444444444444 11 11 11 111111 1 22222 2222222 222 222222222 1111 222222222 111 8888888888888888888888888888888888888888 2 33 2 11 1 5555555555555555555555555 11 111 1111 111 222222 22222 11 111 11 111 11 1 1 1 1 1 11111 111 1 1111 11 77777777777777777777777777777777777777777 33 333 222 111 2222 1 22222 1111111 2 22 22222222 7777777777777777777777777777777777777777777 11111 222222222 2222222222 1 22222222 3333333333333 222222222 11 1 11 22
lowQualScore : 0 4 5 6 0 3 1 666666666 0 22 3 00 1 6 0 555555 3 0 0000000000 2 11111111111111111 11 1 6 6 0 6 2 5 1 1 1 4444 7 0 777777 66666666666 0 0 4 555 55555 7777777777777777 33 3 00 0 1 33 0000000000000000000000000000 0 6 1 55555 7777 0 2 9999999999999999999999999999999999999999999 3 0 0 66 0 888888 4 22 0 33 0 0 1 1111111111111111111 55555555 0 3 9999999 55555 33 33 0 0 888888888888888888888888888888888888888 0 3 222222222222222 3333 1 8888888 3 111 3 4444 0 0 22222222222 11 33 6666666 3 33 2 33 22222 5555 2 111 0 0 3 2 8888888888888888888888888888888888888888888888888 9 33 3 0 0 2 2 9 3 0 0 1111 0 0 0 3 33 3 0 0 0 0 3 111111 0 55 0 33 33 33 33 5555555555555 33 11 11 0 555555 0 3 4 33 55555 5555555 444 999999999 3 5555 444444444 111 7777777777777777777777777777777777777777 6 3 00 3 7 22 5 22 4444444444444444444444444 33 7 1 7 6 1 777 4444 111 888888 6 1 55555 33 33 111 11 666 77 44 0 0 0 0 3 0 66666 777 3 6 77 5 2222 44 44444444444444444444444444444444444444444 88 777 0 999 1 333 7 7 7 7 7 7777 11 4 1 6 99999 1 0 1 1 3 2 3333333 0 8 8 0 8 0 22 0 66666666 8 8 8888888888888888888888888888888888888888888 1 44444 777777777 5 6 9999999999 2 44444444 99 77 1111111111111 4 9999 777 888888888 66 4 7 88 3 2 666 3 3 88 1 99 3 1 0 33
lowQualScore : . . . . . . . ......... . .. . .. . . . ...... . . .......... . ................. .. . . . . . . . . . . .... . . ...... ........... . . . ... ..... ................ .. . .. . . .. ............................ . . . ..... .... . . ........................................... . . . .. . ...... . .. . .. . . . ................... ........ . . ....... ..... .. .. . . ....................................... . . ............... .... . ....... . ... . .... . . ........... .. .. ....... . .. . .. ..... .... . ... . . . . ................................................. . .. . . . . . . . . . .... . . . . .. . . . . . . ...... . .. . .. .. .. .. ............. .. .. .. . ...... . . . .. ..... ....... ... ......... . .... ......... ... ........................................ . . .. . . .. . .. ......................... .. . . . . . ... .... ... ...... . . ..... .. .. ... .. ... .. .. . . . . . . ..... ... . . .. . .... .. ......................................... .. ... . ... . ... . . . . . .... .. . . . ..... . . . . . . ....... . . . . . . .. . ........ . . ........................................... . ..... ......... . . .......... . ........ .. .. ............. . .... ... ......... .. . . .. . . ... . . .. . .. . . . ..
lowQualScore : 0 0 5 7 7 3 0 000000000 7 00 7 00 0 7 7 333333 7 7 0000000000 0 33333333333333333 77 0 7 7 7 7 0 0 0 0 0 3333 3 7 000000 33333333333 0 5 2 000 00000 0000000000000000 22 2 00 0 0 88 2222222222222222222222222222 0 5 0 00000 2222 0 5 2222222222222222222222222222222222222222222 2 0 0 55 0 888888 0 55 0 88 0 0 0 2222222222222222222 00000000 2 2 5555555 00000 88 88 0 0 000000000000000000000000000000000000000 0 2 888888888888888 5555 0 5555555 2 000 2 8888 0 2 55555555555 22 88 0000000 2 22 5 88 22222 2222 5 222 0 0 2 5 0000000000000000000000000000000000000000000000000 2 88 2 0 0 5 5 2 2 0 0 2222 0 0 0 2 88 2 2 0 0 0 2 555555 0 88 2 88 88 22 88 0000000000000 88 00 00 2 555555 5 2 2 55 00000 0000000 000 888888888 2 0000 555555555 000 0000000000000000000000000000000000000000 7 7 33 7 3 33 3 00 0000000000000000000000000 00 3 0 3 7 0 555 8888 000 888888 5 0 00000 88 00 222 00 888 00 22 0 5 0 0 2 0 22222 555 2 5 33 5 0000 77 77777777777777777777777777777777777777777 77 333 7 333 0 777 3 3 3 3 3 7777 33 0 0 7 77777 0 7 0 0 2 5 0000000 8 0 0 8 0 0 22 8 88888888 0 0 2222222222222222222222222222222222222222222 0 33333 999999999 7 7 2222222222 3 22222222 22 44 6666666666666 4 4444 888 666666666 11 4 3 22 6 1 444 6 6 00 4 88 6 4 2 22
consensus : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTG-GAAAGAC-ATNTGTTTACA--CACCTTTTAC-GGTATCTGATTGAAGAGCACAAGCT-TCTAAACAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAA--GGT-----AAACTT-N--CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CAGAC-TTCCAANCT-----TTTGTGA-ATAT-GTNGAAATG----CNC-NAAGTTTC----TCTAA-A---TGTA-CC--TACATGCT-AG-ATC-GCAAT-GTG------TCNAATGG-AAAGGGT-CATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT--TTT--TTAT-TCTTTT-TG--TA--GATGACT-ATCC--AA-TGCTTT-AAA-CAA--TCTAC-AGTCAATATA-TATGCGG-----CGATAA-CCNCGCAAGAT-G---TTTCTGA-T-AAGTCTTTGG-A--GTGA-AGAGAAAGAATTA-C--A----GGACGATCTTT--TAA-----T-TCTAT-TGAATGGAT--GC---A-AAAAAACAAACTT--CACT-ATAAA-TTT-GAAGAAAACACA-TT------GTA-TG--TTAAT-----TAGG-AA---C-TC-C---A-AAATTATT-GAAAT-GTA-AAAACTNTGTTGAAATGTAAGGGGAAAA-TTTC----TT-AGAAAA-TGTAAATT-GTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCGTG--GTC--TCATCAC--ACG---G---AT-G--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTAG-----ATTG-GTAA--TTCT-GATGTCCAAAG---A--C--ACTAC--TCGAAA----T-TA-TACAA-T-ACCATAGTAT---------CCACATTAATG-AT----TAA-C-TAT-TAGTTGTA-CGGTAT--GGCATG-ATGCC-AG-AAACAAACAA-A-CAT-CACTGTATC---ACGT-GGCTTCTTAAATTACAAAACAAGAGCAGCAAGGA---TC-A--TT-T-TAGACAT------CAGAGNA-----CC--TCAGTCAG--TG--TCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCAG-ACTATTTC-ATATA-TCGNGA--AAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTATTTG----------------TTTTTCGAT--GTGAG-----ATGAG--TATCCACA---AGAAATACAAGACAAAGT--TGTTAGTAAATTTTATTTACGTTTACAAAAGCCAAAAACC-GAATATT-TCAAAAGAATCTTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-T-A-T-AGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG------------CTA-----GTTC--T-TA--T--CT-----GTATATAGAA-----TAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA--TATAT-G----T---AT-----T---ATA--TGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGGTCATTA-TTATTAT
Reference ( family-102 ) : TTTCCATATCA-TAAATATAAGACCTGGTGTCTGTGTNTGCCTATTCAGTNAG-AGAANNTTGTGAAAGAC-ATNTGTTCACAATCACCTTTTACTGGTGTCTNATTGANGAGCACAAGCTGTCTAAACAGTGAAAGNANCAGTCGTGTTCCAGGCCAAAGCATGCANGCGANACNGCTCTNNCATAGTATGCAT-AATGAAACATAGGCGNCGAAAA-ATCGACAAA--GGT-----AAACTC-G--CAGCGT--GT-AATTTTTAT-GATTTAAGTAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ACTCTGT----CAGAT-TTCCAANCT-----TTTGCGG-ATAT-GTGAAAAT-----CNC-CAAGTTT-----TCTGG-A---TNTA-CC--TA-ATGCT-AG-ATC-GCAAT-GTG------TCTAATGG-AAAGGGT-CATC--TCGGAA-GA-ANAAGA--------------TG---TTACAATCGGAGTCC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT--TTT--TTAT-TCTTTT-TG--TA--GATGAC--GTCC--AA-TGTTT--AAA-CA---TCTAC-AGTCAATATG-TAT-CA------CGATAA-CCNCGCAAG-T-G---TTTCTGA-T-AAGTCTTTGG-A--GTGA-AGAGAAAGAATTA-C--A----GGACGATCTTT--TAA-----T-TCTAT-TGAATGGAT--GC---A-AAAAAACAAACCT--CACT-ACAAA-TTT-GAAGAAAACACG-T-------GTA-TG--TTAAT-----TAGG-AG---C-TC-C---A-AAATTAT--GAAAT-GTA-AAAACTGTGTTGAAATG-AAGGGGAAAA-TTTC----TT-AGAAAA-TGTAAATT-GTGC--AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTACGTG--GTC--TCAT-AC--ACG---G---AT-G--TTT--ATN-CAA-NAACACT-NA-NGCAGAAACTAGGCGTTTTAANGTAG-----ATTG-GTAA--TTC--GATGTCCAAAG---A--C--ACTAC--TCGAAA----T-TA-TACAA-T-ACCATAGTAT---------CCACATTAATGCATGTCTTGANCNTATGTAGTTGTATCGGTATTGGGCATGTATGCCNAGTAANNAAACAATACCAT-CACGGNATCAATACAT-NGCTNCTTAAATTACANAACAAGAGCAGNAAGGA---TC-A--TT-T-TAGACAT------CAGAGNA-----CC--TCGNTCAG--TG--TCAACTT-T-AACACGTTATNAAA-CTTGAGATGGATGCCCATGCCAG-ACTATTTT-ATATA-TCGAGA--AAT---TATTTCTTATCTTCAAGGTTTTACATTGGTGTAATGACACCAAGAGTATTTGTAAAATTGTTTGAATGTTTTTNGATTTGTGAGTTGTAATGAGGATATCCACAGATAGGAATACAAGACAAAGTCTTGTTNGTAAATTTTATTTACGTTTACAAAAGCCAAAAACCAGAGCATTNTCAANAGAATCTTCTTATCATTNCGGCAGCAATNTTNTGGAATTCATTGCCAGATTT-T-A-T-AGAGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTTNAAACATTATTTTGATAC-------TCAATA-A-TACTCAA-------------CTA-----GTTC--T-TA--T--CT-----GNATATAGAA-----TAT--------TC-TGTGATAA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------T---TATAT-G----T---AT-----T---ATA--TGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGGTCATT--TTATTAT
gi|1 : TTTCCATGTCAATAATTATA-GACCTG-TATCTGT-TTTGCCTAT-CA-TAAGCAAAATTTTG-GAAAGACGATGT-TTTACA--CACTTTTTAC--GAATTTGAGTGAAAA-CATAAACTTT---AACAG----AACATCAGTCGGGTTTCAGACCAAAACATTCATGTGAAACTGCT-TTACATAATAT-CATTGATGAAA-AT-GGC-TTGAAAACATTGATAAA--GGT-----AAACTTTA--CAGGGT--GT-AATTTTTATCGATTTAAGCAAAGCATTT-ATAC--AGTCAA--T----CA--TG-AT-GTTCTGTTGCACAGAC-TTCTAATCT-----TTTGTGATATAT-GTGAAAATACT--TTC-AAAGTTTCAC--TCTAA-AAAATGTA-TC--TACATGCT-AG-ATC-ACAAT-GTG------TCAAATGG-AAAGGGT-CATC--TCGGAA-GA-AGAAAA--------------TG---TTACAATCGGAGTTC-----GCCTTCAAGGCTCTAT-ACTT--GGTCCT-----TTG--TTT--TTAT-TCTTTT-TG--TA--GATGACTTATCT--AAATGTTT--GAAGCA---TTTACTAGTCAATATA-TATGCAGGA---TGATAA-CCACGCAAGAT-G---TT-CTGA-TGAAGTCTTTGG-A--GTGA-AGAGAAAAAATTAAC--A----AGACGATCTTT--TAA-----T-TCTAT-TGAATGGAT--GCC--A-AAAAAATAAACTT--CACT-ATAAA-TTT-GAAGAAAACACA-TT------GTA-TG--TTAAT-----TAGGGAA---C-TT-CTCAG-AAATTATT-GAAAT-GTA-AAAACTTTGTTGTAATGTAAGGGGAAAAATTTC----TT-AGAAAACTGTAAATT-GTGCT-AAACTT-CTGGGTG-TTATATATTGA-----TTGAC-TGTCTTGCGTG--GTC--TCATCAC--ACG---G---AT-G--TTT--ATC-CAA-GAATACT-TA-GTCAAAAACTAGGTGTTTTAAGGTAG-----ATTG-GTAA--TTT--GATGTCCAAAG---A--C--ACTAC--TCAAAA----T-TG-TACAA-T-ACCATAGTATCCCCCCCTCCCACATTA----------TAAACTGAT-T-GTTGTA-CGGTAT--GGCATG-ATGCCCAGGAAACAAACAA----ATACACTGTATC---ACGTAGGCTTTTTAAATTACAAAACAAGAGCAGCAAGGA---TC-A--TTGT-TAGACAT------CAGAGTA-----CC--TCAGTCAGTTTG--TCAACTT-T-AATAT-TTATC-AG-CTTGAGATGGATGCCCATG-CAG-ACTATTTCAATATA-TCG-GA--AAT---TATTTCTTATCTTCAAAGTTTTACATTAGT---ATGACACC-AGAGTA--------------------TTTTTCG----GTGAG-----ATGAG--TATCCACA---AGAAATACAAGACAAAG---TGTTAGTAAATTTTATTTATGTTTACAAAAGCC-AGAAC--GAATATTTCCAAAAGAGTTCTTTT-TCATTTCAGCAGCAATTTTATGGAATTCATTGCCAGATTTAT-ATT-AGGGAATGT-AGAGCTTTGAACTTCTTTTA-GATCAGCCCTACCTTAAAACATTATTTTGATAC-------TCGATA-A-TACTCAG-------------CTA-----GTTC--T-TA--T--CT-----GTATATAGAA-----TAC--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATGCATT---------T---TATAT------T---AT-----C---ATA--TGT-TTAAAGACAGGACCACAATGT-GATAACTA-T---T-TT-TAT-AAACTAAATCGTTGCAATCCTGT-TTAAATAAAGGTCA-T--TTATTAT
gi|10 : AGAA---TCCA--TT-T-TAGACAT------CAGAGTA-----CC--TCATTCAT--TG--TCAACTT-TTAATATGTTATCAAG-CTTGAGATGGATGCCCATGCCAG-ACTATCTC-ATATA-TCGTAA--AAT---TA-TTCTTATCTTCAAAGTTTTa
gi|11 : ATG-ATT---------T----ATAT-G----T---AC-----TCGCATAGATGT-TTAAAGATAAGACCACAA---------CTAGT---T-TT-TAT-AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGGTCATTA-TTATTAT
gi|12 : atgtgcagatataATAT-G----T---AT---------ATA--TGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAAC-AAATTG-TGCAAACCTGT-TTAAATAAAGGTCATTA-TTAATATt
gi|13 : aatgcaaggttaata---------T---TATATTG----T---AT---------ATA--TGT-T--AAGACAGGACCA--ATGTTAA-AACTAGT---T-TT-TATAAAACT-AATTGTTGCAATACTGTCTTAAAAAAAGTTCATTAATTATTATt
gi|14 : --TG--TCAACTTGT-AACATGTTATTAAA-CTTAAGATGGATGTCCATGTCAG-ACTATTTT-ATCTA-TTGGAA--AAT---TATTATGTACTTTCA
gi|15 : ACAGAACCACATTGT-AA-A-CTAGTATAT-TT-TA-----CTAAATA--TGCCACCCTGT-CTAAATAAAG---AAT--TTATTAT
gi|16 : ACAGGACCAAAAGGT-AA-A-CTAGT---T-TG-TA--AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGGTTATT--
gi|17 : ACTAAAT-GT-GCCATCCTGT-CTAAGTAAAG---AAT--TTATTATatt
gi|2 : tattttTTTCCATATCA-TAAATATAAGACCTGGTATCTGTGTTTACCTATTCAATAA--AGAAGTTTGTGAAAGA---TATGTTTATA--C-CCTTTTAC-GGTGTCTG-TTGAAGAACA-AAGCTGTTTAAACAAT---AGCATCAGTCGT--TCCAGACCAAA--ATGCATGCGATACTGTT--GACATAATATGCAT-AATAAA---TAGGCGTTGAGAC-AT-GCTAAA--GGTGGGGAAAGCTT-GGGCAGCGTTTGTTAATTTTTATTGATCTAAGCAA-GTATTT-GGACCCAGTCAAGAT----CA--G--AT-ATTTTGTGCA-CAAGT-TTC--ATGC-----TTTGCGG-ATAT-GTTGAAATGGGCCCTC-TA----------TCTGACA---TGTG------A-ATGCTGAG-AGT-GCAAT-GTGACCGCCTCTAATGGGAAAGGGA-CAGC--TCGGAAAGAGAGAAGAGGGAAAGTGTATACTG---TTACAATCTGAGTTCCTCAAACCCTCAAGCGTCTATTA--T--GGTCCTCGTAATTT--TTT--TTGT-TCTTTTATGGGTAATGATGACT-ATCCTAAA-TGTTTTTAAA-CAA--TCTAC-AGTCAA------------------GATA---CTTGCAAG-T-G---TTTCTGAAT-AAGTCTTTGG-AATGTGA-AGAGGAAGAAG------A----GGAC-ATCTAT--AAA-----TGTATATGTTAATGGAT--GC---AGAAAAAACAAAC-T--AACTTATAAA-TTTTGAAGAAAACAAAAT-------GTA-TG--TTTAA-----TAGG-AG---CATCAC---AGAAAGTAT--GAA-T-TTAGAAAACTGTGT-GAAATG-GTAGGTGAAT-TTTC----TT-AGAAAA-TGTAAATT-GTGC--A---CT-CGGGATGATT-TATAT-GA-------GAA-TGTCTTACATCTCGTCAATCAT-AC--ACG---G---GTTGATTTT--ATGTCAA-CAACATT-GA-TGCA--AACTAGTGGTATTAAAGTAAGTATAATTG-ATAAAATTCT-GAGGTCCAAAACAAG--C--ACT-C--TTGAAA----TATAATACAA-TTACCATAGTAT---------CCACA---ATGAAT----------TAT-TAGTT-TA-CGGTAT---GCATG-A-GCCAAG--AACAAACAATACCA--CATGGTATCAATACA--GATTGCTTAAAT-ACAAAACA-GAGCAGGAAGGA---TC-AAATT-T-TAGACACACCTTACAAAGAAAAGCACC--TCGATCAA--TGAGTACACTT---AACTC-TTATAAAATCTTGAGATGGATGCCCATTTCAGGACTATTTT-A-ATACTCGAGACAGATCGATATTT-TTGTCTTCAAG--TTTACAT-GGTGTAATGACACTAAGAGTATTTGTAAAATTGTTT--------TTTGAT-----AGTTGTAATGAGG-TATCCACAGATAGGAATATAAAACAAAGTCTTGTTTGTAAA-TTTA-TTACG-TTAC-AAAGCCAAAAACC-GAGCATTGTCAACAGAATCT-----TCATTAAGGCAGCAATTTTTTGGAATTC-TTG-CAGATTT-T-A-T-AGAGAA-GTAAAAAATTTG-AC--CTTCTATAATCAG-CCTAACTTCCAACATAA--TTGGTAC--------CAATATACTACTCGT-------------CTAAT---GTTC----TA--T---TGA---GAATATAAAG-----TAT--------TT-TGTGAta
gi|3 : aAAAA-ATTAAAAAGAGGGT-----AAATTC-T--CCGC-------AATGTTTAT-GGTCTAATTAAAG--TTA-AAACA-GGTCGA--TAAAACAATT--ATTACTCTGC----CAGATATTACAGGCT-----CCTGT----CATCGTTGAAAC-----TA---AAGTTTTCACCTCTAG-G---CTTATCC--TACATGCT-AG-ATC--TAACAGTG------TCAAATGG-AAAGGGTCCATC--TCAGAA-GA-GAAAGA--------------TG---TTACAATCGGAGTC-------CCCTC--GGCTCTAT-A--TTGGGTCCT-----TTTGCTTTTATTAT-TCTTTT-TG--------------GT-C--AA-TGCTTTGAAG-CAATTCCTAC-AGTCAATATACTAT-CGACTCATCGATAATCCACGCAAGAT-GTTTTTTCTGA-T-AAGTCTTTGGCAT-GTGATTGAGAAAGAATTA-CATA----GTACGATCTTTTATAA-----T-TC-AT-TGAATGGATTCGCAAAA-AAAAAATAAACCTCGCACT-ACAAATTTT-GAAG-AAACACA-TTCACAAATTA-TGGATTAAT-----TAGG-GACTTC-TC-T---A-AAA-TATTCGAAAT-GTA-AAAACTTTGTGAAAATGTAAGGGGAAAA-TTTC----TTCAGAGAA-TGTAAATT-G-GCTAAAACTTACTGGGTG-TT-TATATTGAAATGTCTGAACTGT-TTGCGTG--GTC--TCATCACTTACG---GGAAAT-GT-TTT--ATG-CAAGGAACACT-TAGTCCAGAAACTAGGTGTTTTAAG--AG-----ATTGAGTAA--TTCTTTATGTCAAAAG---AAGC--ACTACCTCCAAAA----T-TT-AACAAGT-ACCATAGTAT---------TCACATTAATGCATGTCTTAATCATATGTA-TTGTATCGGTATTGGGCATGTATGC--AGTAACAAAACAA-A-TAT-CACTAGATC----TAT-TGCTT-TTAAATTACATAACAAGA-CAGCAAGGAAATTC-A--TT-TGTAGACAT------CA-ATAA-----CCGATCAGTCAG--TG--TCAACTC-T-
gi|4 : GTGTCTGT-TGTGCCTAT---GTCAG-AAAATATTG---AAGAC-ATCTGTTCACAATCAT-TTTTACTGATATCTCAT--AC-AGCACAA-----CTAA-TAGTGAAAAAAACAGTCATGTTC-AGGC---AGCAT-CAAGCGAGACAGCTCTTTCA--GTAT------ATGAAACAT-GGT-ACGAAAA-ATCGACAAT--GAG-----AAACTA-----AGTGT--CT-TATTTGTA--GATTTAAGTAAAGCTTTTGACAC--GGTAAA--T----CA--TCAGG-ATT----------GAC-TCCCAAACTATGTTTTTG-GA-ATAT-GTGAAAAT-----CATACAA-TTG-----TTTAA-A---TATA-CTGTTA-A--AT-AGCATCAGCAAT-GTG------TTTGATG--AATGGAT-GTTCAGTCAGAT-AA-ATACGA--------------TAGGATGACAATAGGAGT-------ACCATAAAGGCGTCAA-A--TA-GGTCCT-----TGT--TTT--TTATATCTCTA-TG--TA--AATGACT-ACCC--GC-TGCTT--ACA-CAC--TCTAC-AGTCCATATG-TATGCA------TGA--A-CACCGCAAG-TTG---TTTCGGA-T-AAAAGTT--G-A--TTGT-ATAAAAGCAATTA-C--ATAGTGGA------TT--TAAAATACT-TCTG---GAATG-AT--GA---G-ATAAAACAAACTTA-CA-----AAA-TCT-TAACAAAA-ACG-T-------GCAGTG--ATAATATGTACAGA-A---------T---A-AAGTTAA--GAAATTGCA-GAAA--GTATTGA--TG-AAGTGGATGA-TATCACAATT-TGAAAA-TGTATCTTTGTGC--AAATTA-CTTGGTG-TT-TATATTGA-----CTAGA-TG-CTCACTTG--GTC--TGA--AC--ATGCTTG---AA-A--TTTTAAAA-AAA-AAAAACTGCA-AGCAAAA--TAGGCGTTTTAATGTTG-----ATTACG-----TTC--AATGTACACCG---A--CTTTTTAC--T-GAAATTTTT-TA-TACAA-T-ttata
gi|5 : caTGTA-TGACACCA-GAGTATTTG------------AATGTTTTTAGATTTGTGA------ATGAG-ATATCCACA---AGAAATACAAGACAAAGT---GTTAGTA--TTTTATTTACGTT-ACAAAAGCCAAAA--CAGAATATT-TCAAAA-AATCTTTTTATCATTTCAGCAGCAATGTTATGGAATTCATTGCCAGATTT-TAA-T-AGAGAATGT-GCAACTGTA-ACTTCTTTTA-GATCAG-CCTATCTT-AAACATTATTTTGATACTCAATAGTCAATA-A-TACTCAAGTGTTTATGATCTCTATTGAGGTGCATT-TAGTT--CTTATCTGTATATAGAA-----TA---------TC-TGTAATAA-TTTCAT----------GTTG-TAT--------GA--TGTATG-TTT---------TA--TATAT-G----TATAAT-----T---ATA--TGT-T---------------AAT----A-AACTAGT---T-CG-TA--AAACT-AATTG-TGCAATCCTGT-ATAAATAAAGGTTATTG-TTATTAT
gi|6 : catAATTCATTGCCAGATTT-T-A-TTAGGGATTGC-AGAACTTTG-ACTTCTTTTA-GATCAGCC-TACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG------------CGA-----GTTC--T-TA--T--CT-----GTATATAGAA-----TA---------TC-TGTGATGA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------TATATATAT-GTATAT---AT-----T---GTA--TGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAGGTCATTA-TTATTAT
gi|7 : GAATGT-AGAACTTTG-ACTTCTTTTA-GATCGG-CCTACCTTG-AACATCATTTTGACAC-------TCAATA-A-TACTCAAATTT---------CTATG---GTTA--C-TA--T----------TAAAAAGAG-----TATAGTTGTTATC-TGTGATAATTTTCAT----------GCTG-TGT--------GA--TGTATG--TT---------T---TACAT-G----T---ATATATGT---ATA--TGTGTTAAAGACAGGACCACTATGT--G-AACT--T---TATTGTAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAAGTTATT--
gi|8 : A-------------CAA-----ATTT--T-AA--T--TT-----GCATATGGAACGGAATAT--------TCCTATAATGA-TTTCATATCTTAACTGGTTCCTGTAATCTTCAGGATTATATA-ATTGGCAAAGTTTAA-TATAT-G----T---ATAA---T---ATA--TGT-T-AAAGACAGGACCACGATGT-AA-AACTAGT---T-TG-TAT-AAA-TAAatgt
gi|9 : acaatacatggagTTC--TGTA--TTACC-----GAATACAGAA-----TAT---------C-TGTGATAA-TTTCAT----------GTTGTTGT--------GG--TGTATG-A-T---------T---TATAT-G----T---A------T---ATA--TAT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGG-TTAAATAAAGGTCATTA-TTATTAT
Alignments
lowQualScore : 1 1 1 3333 1 22 222222 1 111 1 1 33333333333333333 1 2 1 333333 1 1 111 1 1 3333333333 444444444444444 11 11 1 22 5555555555555555555555555555555 11 2222222222222 1 888888888888888888888888 33333333333333 1 11 11 1 222222 11 1 11 1 1 6666666666666666666 33333333 2222222 22222222222 1 1 1 2222222 1 22 11 1 11 1 77777777777777777 1111 111 111 2222 1 11 3333 11 3333333333 11 1111111 111 222222222 2 222222 1 11 111 2 6666666666 22 1 1 1 2222 1 1 1 22 11 1 1 333333 1 11 11 11 11 4444444444444 11 11 11 111111 11 22222 2222222 1111 222222222 1111 222222222 111 88888888888888888888888888888888888888888 1 11 1 11 1 22222 3333333 22 111 1111 111 222222 22222 11 111 11 111 1 1 1 1 1 11 111 1 1111 11 8888888888888888 3333333 1 111 222 3333 111 2 111 111111 22222 1 22222222 1 77777777777777777777777777777777777777777777 11111 222222222 2222222222 1 22222222 22222222222222222222 2222 11 1 11
lowQualScore : 5 1 5 6 3 1111 3 6 00 1 6 333333 3 88 333 3 2 2 99999999999999999 6 6 6 2 6 1 6 3 7 555555 6 3 3 333 0 0 7 3333333333 111111111111111 66 3 00 0 1 33 8888888888888888888888888888888 00 0 22 8888888888888 0 1 000000000000000000000000 33333333333333 8 0 33 66 0 888888 1 22 0 33 0 0 0 1111111111111111111 55555555 0 3 9999999 77777777777 0 0 0 8888888 3 0 0 33 99 0 3 33 0 3 11111111111111111 4444 1 9 3 777 111 3 4444 0 0 33 5555 11 0000000000 3 33 2 4444444 777 333333333 0 0 55 3 888888 0 33 777 0 3333333333 3 55 0 0 2 1 9 3 9 0 44 1111 0 0 0 3 55 99 0 0 3 111111 0 55 0 33 33 22 33 5555555555555 33 00 00 0 333333 22 4 22 55555 5555555 6666 999999999 3 5555 444444444 111 66666666666666666666666666666666666666666 6 3 88 6 3 7 6 88 4 3 00000 5555555 55 7 7 6 777 4444 111 888888 6 1 55555 33 0 111 11 666 3 8 33 0 7 0 0 3 0 0 33 777 3 6 6 5 2222 44 0000000000000000 3 8888888 2 666 333 3333 333 7 7 7 7 3 777 6 333333 0 3 2 22222 0 8 8 0 8 0 3 8 0 66666666 8 8 0 66666666666666666666666666666666666666666666 0 44444 777777777 5 6 9999999999 2 44444444 77 5 11111111111111111111 9999 777 2222 4 7 88 3 2 666 3 3 88 1 99 3 55 3
lowQualScore : . . . . . .... . . .. . . ...... . .. ... . . . ................. . . . . . . . . . ...... . . . ... . . . .......... ............... .. . .. . . .. ............................... .. . .. ............. . . ........................ .............. . . .. .. . ...... . .. . .. . . . ................... ........ . . ....... ........... . . . ....... . . . .. .. . . .. . . ................. .... . . . ... ... . .... . . .. .... .. .......... . .. . ....... ... ......... . . .. . ...... . .. ... . .......... . .. . . . . . . . . .. .... . . . . .. .. . . . ...... . .. . .. .. .. .. ............. .. .. .. . ...... .. . .. ..... ....... .... ......... . .... ......... ... ......................................... . . .. . . . . .. . . ..... ....... .. . . . ... .... ... ...... . . ..... .. . ... .. ... . . .. . . . . . . . .. ... . . . . .... .. ................ . ....... . ... ... .... ... . . . . . ... . ...... . . . ..... . . . . . . . . . ........ . . . ............................................ . ..... ......... . . .......... . ........ .. . .................... .... ... .... . . .. . . ... . . .. . .. . .. .
lowQualScore : 5 0 5 7 3 0000 3 7 00 0 7 000000 3 00 777 7 0 0 33333333333333333 7 7 7 0 7 0 7 3 3 000000 7 3 3 777 0 5 0 5555555555 555555555555555 00 2 00 0 0 88 8888888888888888888888888888888 22 2 22 0000000000000 0 0 000000000000000000000000 55555555555555 8 0 22 55 0 888888 0 55 0 88 0 0 2 2222222222222222222 22222222 2 2 5555555 55555555555 0 0 0 0000000 2 0 8 88 22 0 2 88 0 2 22222222222222222 2222 0 8 2 555 000 2 8888 0 2 22 0000 22 8888888888 2 22 5 8888888 555 888888888 8 0 88 2 888888 0 88 555 0 5555555555 2 55 0 0 5 0 2 2 2 0 55 2222 0 0 0 2 55 88 0 0 2 555555 0 88 2 88 88 00 88 0000000000000 88 22 22 2 888888 55 2 88 00000 0000000 0000 888888888 2 0000 555555555 000 77777777777777777777777777777777777777777 7 3 33 7 3 3 7 33 7 3 00000 0000000 33 3 3 7 555 8888 000 888888 5 0 00000 88 2 222 00 888 2 8 55 0 0 0 0 2 0 8 88 555 2 5 7 5 0000 77 3333333333333333 7 3333333 0 777 333 0000 777 3 3 3 3 7 777 7 777777 7 2 5 00000 8 0 0 8 0 0 2 0 8 88888888 0 0 6 66666666666666666666666666666666666666666666 6 33333 999999999 7 7 2222222222 0 22222222 99 0 66666666666666666666 4444 888 9999 4 3 22 6 1 444 6 6 00 4 88 6 00 6
consensus : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT-TTTAAACAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTG-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTT----N--TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GAT-AA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATT-ACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--ACT-ATAAATTTTGAAGAAAACACATTG------TA-TG--TTAAT---TA-GGAAC-TT-CTC-A-AAATTATT-GAAAT-GTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTC----TT-AGAAAA-TGTAAATT-GTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCGTG--GTC--TCATCAC--ACG---G---AT-G--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTAG-----ATTG-GTAA--TTC-TGATGTCCAAAG---A--C--ACTAC--TCGAAA----T-TA-TACAA-T-ACCATAGTAT---------CCACATT-ATG-A----T-AATT-AT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-ATA-CACTGTATCA-TAC-GGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC-A--TT-T-TAGACAT------CAGAGNA-----CC--TCAGTCAG--TG--TCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCAG-ACTATTTC-ATATA-TCGNGA--AAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCCAAAA-CCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-T-ATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAGT-T---------CTA-----GTTC--T-TA-------T--CT--GTATATAGAA-----TAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
Reference ( family-102 ) : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GGTATCTGATTGAAGAGCACAAGCT-TCTAAACAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTN--CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAANCT-----TTTGTGA-ATAT-GTNGAAAT-G--CN--CNAAGTTT----C--TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GGC-----GAT-AA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATT-ACA----GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--ACT-ATAAATTT-GAAGAAAACACATTG------TA-TG--TTAAT---TA-GGAAC-TC-C---A-AAATTATT-GAAAT-GTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTC----TT-AGAAAA-TGTAAATT-GTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCGTG--GTC--TCATCAC--ACG---G---AT-G--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTAG-----ATTG-GTAA--TTC-TGATGTCCAAAG---A--C--ACTAC--TCGAAA----T-TA-TACAA-T-ACCATAGTAT---------CCACATTAATG-A----TTAACT-AT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--AGAAAC-AAACAA-ACATCACTGTATCA-CGT-GGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC-A--TT-T-TAGACAT------CAGAGNA-----CC--TCAGTCAG--TG--TCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCAG-ACTATTTC-ATATA-TCGNGA--AAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCCAAAAACCGAATATT-T-CAAAAGAATCTTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-T-A-TAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG------------CTA-----GTTC--T-TA-------T--CT--GTATATAGAA-----TAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|1 : TTTCCATGTCAATAATTATA-GACCTG-TATCTGT-TTTGCCTAT-CA-TAAGCAAAATTTTGGAAAGACGATGT-TTTACA--CACTTTTTAC-GA-ATTTGAGTGAAAA-CATAAACT-TT--AACAG----AACATCAGTCGGGTTTCAGACCAAAACATTCATGTGAAACTGCT-TTACATAATAT-CATTGATGAAA-AT-GGC-TTGAAAACATTGATAAAG---GT-----AAACTTTA-CAGGGT--GT-AATTTTTATCGATTTAAGCAAAGCATTT-ATAC--AGTCAA--T----CA--TG-AT-GTTCTGTTGCACA-GAC-TTCTAATCT-----TTTGTGATATAT-GTGAAAAT-A--CTTTCAAAGTTT----CACTCTAA-AAAATGTA-TC--TACAT-GCT-AGATC-ACAAT-GTG------TCAAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAAA--------------TG---TTACAATCGGAGTTC-----GCCTTCAAGGCTCTAT-ACTT--GGTCCT-----TTG---TTT-TTAT-TCTTTT-TG--TA--GATGACTTATCTA-AATGTTTG-AAG-C-AT--TTACTAGTCAATATA-TATGCAGGAT-----GAT-AA-CCACGCAAGATG-TT---CTGA-TGAAGTCTTTGG-A--GTGAA-GAGAAAAAATTAACA----AGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--GCCA-AAAAAA---TAAACTT-C--ACT-ATAAATTT-GAAGAAAACACATTG------TA-TG--TTAAT---TAGGGAAC-TT-CTCAG-AAATTATT-GAAAT-GTA-AAAACTTTGTTGTAATGTAAGGGGAAAAATTTC----TT-AGAAAACTGTAAATT-GTGCT-AAACTT-CTGGGTG-TTATATATTGA-----TTGAC-TGTCTTGCGTG--GTC--TCATCAC--ACG---G---AT-G--TTT--ATC-CAA-GAATACT-TA-GTCAAAAACTAGGTGTTTTAAGGTAG-----ATTG-GTAA--TT--TGATGTCCAAAG---A--C--ACTAC--TCAAAA----T-TG-TACAA-T-ACCATAGTATCCCCCCCTCCCACATT-----A----TAAACTGAT---T-GTTGTA-CGGTAT--GGCATG-ATGCCCAGGAAAC-AAACAA-ATA-CACTGTATCA-CGTAGGCTT-TTTAAATTACAAAACAAGAGCAGCAAGGA---TC-A--TTGT-TAGACAT------CAGAGTA-----CC--TCAGTCAGTTTG--TCAACTT-T-AATAT-TTATC-AG-CTTGAGATGGATGCCCATG-CAG-ACTATTTCAATATA-TCG-GA--AAT---TATTTCTTATCTTCAAAGTTTTACATTAGT---ATGACACC-AGAGTA----------------TTTTTCG----G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG---TGTTAGTAAATTTTATTTATGTTTACAAAAGCCAGAA--CGAATATT-TCCAAAAGAGTTCTTTT-TCATTTCAGCAGCAATTTTATGGAATTCATTGCCAGATTTAT-ATTAGGGAATGT-AGAGCTTTGAACTTCTTTTA-GATCAGCCCTACCTTAAAACATTATTTTGATAC-------TCGATA-A-TACTC-AG------------CTA-----GTTC--T-TA-------T--CT--GTATATAGAA-----TAC--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATGCATT---------T--TA------TAT-----T---AT---CATATGT-TTAAAGACAGGACCACAATGT-GATAACTA-T---T-TT-TAT-AAACTAAATCGTTGCAATCCTGT-TTAAATAAAGG--TCAT---TTATTAT
gi|10 : AGAA---TCCA--TT-T-TAGACAT------CAGAGTA-----CC--TCATTCAT--TG--TCAACTT-TTAATATGTTATCAAG-CTTGAGATGGATGCCCATGCCAG-ACTATCTC-ATATA-TCGTAA--AAT---TA-TTCTTATCTTCAAAGTTTTa
gi|11 : ATG-ATT---------TA-TA------TGTACTCGC---AT----AGATGT-TTAAAGATAAGACCACAA---------CTAGT---T-TT-TAT-AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|12 : atgtgcagatata--TGCAAG-GTT---------AA-TAA-----TAT----GT---AT----ATATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAAC-AAATTG-TGCAAACCTGT-TTAAATAAAGG--TCATT-ATTAATATt
gi|13 : aaT---------TA-TA------T-T----GT---AT----ATATGT-T--AAGACAGGACCA--ATGTTAA-AACTAGT---T-TT-TATAAAACT-AATTGTTGCAATACTGTCTTAAAAAAAGT--TCATTAATTATTATt
gi|14 : --TG--TCAACTTGT-AACATGTTATTAAA-CTTAAGATGGATGTCCATGTCAG-ACTATTTT-ATCTA-TTGGAA--AAT---TATTATGTACTTTCA
gi|15 : ACAGAACCACATTGT-AA-A-CTAGTATAT-TT-TA-----CTAAATA--TGCCACCCTGT-CTAAATAAAGA----AT---TTATTAT
gi|16 : ACAGGACCAAAAGGT-AA-A-CTAGT---T-TG-TA--AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TTATT-ATT
gi|17 : ACTAAAT-GT-GCCATCCTGT-CTAAGTAAAGAATTTATT-ATTA
gi|2 : tattttTTTCCATATCA-TAAATATAAGACCTGGTATCTGTGTTTACCTATTCAATAAA-GAAGTTTGTGAAAGA---TATGTTTATA--C-CCTTTTAC-GGTGTCTG-TTGAAGAACA-AAGCTGTTTAAACAAT---AGCATCAGTCGT--TCCAGACCAAA--ATGCATGCGATACTG-T-TGACATAATATGCAT-AAT--AA-ATAGGCGTTGAGAC-AT-GCTAAAG---GTGGGGAAAGCTTGGGCAGCGTTTGTTAATTTTTATTGATCTAAGCAA-GTATTT-GGACCCAGTCAAGAT----CA--G--AT-ATTTTGTG---CACAAG-TTTCATGCT-----TT-GCGG-ATAT-GTTGAAAT-GGGCC--C----TCT----A--TCTGACA---TGTG------A-AT-GCTGAGAGT-GCAAT-GTGACCGCCTCTAATGGGAAAGGGAC-AGC--TCGGAAAGAGAGAAGAGGGAAAGTGTATACTG---TTACAATCTGAGTTCCTCAAACCCTCAAGCGTCTATTA--T--GGTCCTCGTAATTT---TTT-TTGT-TCTTTTATGGGTAATGATGAC-TATCCTAAATGTTTTTAAA-CAAT--CTAC-AGTCAA--------------------GAT-A---CTTGCAAG-TGTTT---CTGAAT-AAGTCTTTGG-AATGTGAA-GAGGAAGAAG----A----GGAC-ATCTATAA--A-----TGTATATGTTAATGGAT--G-CAGAAAAAA---CAAACT--A--ACTTATAAATTTTGAAGAAAACAAAATG------TA-TG--TTTAA---TA-GGAGCATCAC---AGAAAGTAT---GAAT-TTAGAAAACTGTGT-GAAATGGTAGGTG-AAT-TTTC----TT-AGAAAA-TGTAAATT-GTGC----ACT--CGGGATGATT-TATAT-GA-------GAA-TGTCTTACATCTCGTCAATCAT-AC--ACG---G---GTTGATTTT--ATGTCAA-CAACATT-GA-TGCAAA--CTAGTGGTATTAAAGTAAGTATAATTG-ATAAAATTC-TGAGGTCCAAAACAAG--C--ACT-C--TTGAAA----TATAATACAA-TTACCATAGTAT---------CCACA---ATG-A-------ATT-AT---TAGTT-TA-CGGTAT--G-CATG-A-GCC--AAGAAC-AAACAATACCACATGGTATCAATAC-AGATTGCTTAAAT-ACAAAACA-GAGCAGGAAGGA---TC-AAATT-T-TAGACACACCTTACAAAGAAAAGCACC--TCGATCAA--TGAGTACACTT---AAC-TCTTATAAAATCTTGAGATGGATGCCCATTTCAGGACTATTTT-A-ATACTCGAGACAGATCGATATTT-TTGTCTTCAAG--TTTACAT-GGTGTAATGACACTAAGAGTATTTGTAAAATTG----TTTTTTGAT--AGTTGTAATGAGG-TATCCACAGATAGGAATATAAAACAAAGTCTTGTTTGTAAA-TTTA-TTACG-TTAC-AAAGCCAAAAACCGAGCATTGT-CAACAGAATC----T-TCATTAAGGCAGCAATTTTTTGGAATTC-TTG-CAGATTT-T-A-TAGAGAA-GTAAAAAATTTG-AC--CTTCTATAATCAGCCTAACTTC-CAACATAA--TTGGTAC--------CAATATACTACTC--GT-----------CTAAT---GTTC----TA-------T---TGAGAATATAAAG-----TAT--------TT-TGTGA
gi|3 : aAAAA-ATTAA-AAAGAGGGT-----AAATTCT--CCGC-------AATGTTTAT-GGTCTAATTAAAG--TTA-AAACA-GGTCGA--TAAAACAATT--ATTACTCTGC----CA-GATATTACAGGCT-----CCTGT----CATCGTTGAAA------C--TAAAGTTTTCACC--TCTAG-G---CTTATCC--TACAT-GCT-AGATC--TAACAGTG------TCAAATGG-AAAGGGTCCATC--TCAGAA-GA-GAAAGA--------------TG---TTACAATCGGAGTCC-------CCTC--GGCTCTAT-A--TTGGGTCCT-----TTTGCTTTTATTAT-TCTTTT-TG---------G------TC--AATGCTTT-GAAGCAATTCCTAC-AGTCAATATACTAT-C--GACTCATCGAT-AATCCACGCAAGATGTTTTTTCTGA-T-AAGTCTTTGGCAT-GTGATTGAGAAAGAATT-ACATA--GTACGATCTTTTATAA-----T-TC-AT-TGAATGGATTCG-CA-AAAAAAAAATAAACCT-CGCACT-ACAAATTTTGAAGAAA-CACATTCACAAATTA-TGGATTAAT---TA-GGGAC-TT-CTCTA-AAAT-ATTCGAAAT-GTA-AAAACTTTGTGAAAATGTAAGGGG-AAAATTTC----TTCAGAGAA-TGTAAATT-G-GCTAAAACTTACTGGGTG-TT-TATATTGAAATGTCTGAACTGT-TTGCGTG--GTC--TCATCACTTACG---GGAAAT-GT-TTT--ATG-CAAGGAACACT-TAGTCCAGAAACTAGGTGTTTTAAG--AG-----ATTGAGTAA--TTCTTTATGTCAAAAG---AAGC--ACTACCTCCAAAA----T-TT-AACAAGT-ACCATAGTAT---------TCACATTAATGCATGTCTTAATC-ATATGTA-TTGTATCGGTATTGGGCATGTATG-C--AGTAACAAAACAA-ATATCACTAGATC--TAT-TGCTT--TTAAATTACATAACAAGA-CAGCAAGGAAATTC-A--TT-TGTAGACAT------CA-ATAA-----CCGATCAGTCAG--TG--TCAACTC-T-
gi|4 : GTGTCTGT-TGTGCCTAT---GTCAG-AAAATATTG--AAGAC-ATCTGTTCACAATCAT-TTTTACTGATATCTCAT---ACAGCACAA-----CTAA-TAGTGAAAAAAACAGTCATGTTC-AGGC---AGCAT-CAAGCGAGACAGCTCTTTCA--GTAT------ATGAAACAT-GGT-ACGAAAA-ATCGACAATG---AG-----AAACT----AAGTGT--CT-TATTTGTA--GATTTAAGTAAAGCTTTTGACAC--GGTAAA--T----CA--TCAGG-ATT-----------GAC-TCCCAAACTATGTTTTTG-GA-ATAT-GTGAAAATCA--TA--CAA---TT----G--TTTAA-A---TATA-CTGTTAAATAGC----ATCAGCAAT-GTG------TTTGATG--AATGGATG-TTCAGTCAGAT-AA-ATACGA--------------TAGGATGACAATAGGAGT-------ACCATAAAGGCGTCAA-A--TA-GGTCCT-----TGT---TTT-TTATATCTCTA-TG--TA--AATGAC-TACCC--GCTGCTT--ACA-CACT--CTAC-AGTCCATATG-TATGC-----------ATGAA-CACCGCAAGTTGTTT---CGGA-T-AAAAGTT--G-A--TTGTA-TAAAAGCAATT-ACATAGTGGA------TTTA--AAATACT-TCTG---GAATG-AT--G-AG-ATAAAA---CAAACTTAC--A-----AAATCT-TAACAAAA-ACGT-G------CAGTG--ATAATATGTACAGAAT--------A-AAGTTAA--GAAATTGCA-GAAA--GTATTGA--TG-AAGTGG-ATGATATCACAATT-TGAAAA-TGTATCTTTGTGC--AAATTA-CTTGGTG-TT-TATATTGA-----CTAGA-TG-CTCACTTG--GTC--TGA--AC--ATGCTTG---AA-A--TTTTAAAA-AAA-AAAAACTGCA-AGCAAAA--TAGGCGTTTTAATGTTG-----ATTACG-----TTC--AATGTACACCG---A--CTTTTTAC--T-GAAATTTTT-TA-TACAA-T-ttata
gi|5 : caTGTA-TGACACCA-GAGTAT--------TTGAATGTTTTTAGATTTG--TGA-ATGA-GATATCCACA---AGAAATACAAGACAAAG--T-GTTAGTA--TTTTATTTACGTT-ACAAAAGCCAAAA-CAGAATATT-T-CAAAA-AATCTTTTTATCATTTCAGCAGCAATGTTATGGAATTCATTGCCAGATTT-TAA-TAGAGAATGT-GCAACTGTA-ACTTCTTTTA-GATCAG-CCTATCTT-AAACATTATTTTGATACTCAATAGTCAATA-A-TACTCAAGTGTTTATGATCTCTATTGAGGTGCATT-TAGTTCTTAT--CT--GTATATAGAA-----TA---------TC-TGTAATAA-TTTCAT----------GTTG-TAT--------GA--TGTATG-TTT---------TA-TA------TAT----GTATAAT---TATATGT-T---------------AAT----A-AACTAGT---T-CG-TA--AAACT-AATTG-TGCAATCCTGT-ATAAATAAAGG--TTATT-GTTATTAT
gi|6 : catAATTCATTGCCAGATTT-T-ATTAGGGATTGC-AGAACTTTG-ACTTCTTTTA-GATCAG-CCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG------------CGA-----GTTC--T-TA-------T--CT--GTATATAGAA-----TA---------TC-TGTGATGA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------TA-TATATATGTAT----AT---AT---TGTATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|7 : GAATGT-AGAACTTTG-ACTTCTTTTA-GATCGGCC-TACCTT-GAACATCATTTTGACAC-------TCAATA-A-TACTCAAATTT---------CTATG---GTTA--C-TA-------T-------TAAAAAGAG-----TATAGTTGTTATC-TGTGATAATTTTCAT----------GCTG-TGT--------GA--TGTATG-TTT---------TA-CA------TGT----AT---ATATGTATATGTGTTAAAGACAGGACCACTATGT--G-AACT--T---TATTGTAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAAG--TTATT-AT
gi|8 : A-----ATTT--T-AA-------T--TT--GCATATGGAACGGAATAT--------TCCTATAATGA-TTTCATATCTTAACTGGTTCCTGTAATCTTCAGGATTATATA-ATTGGCAAAGTTTAATA------TAT----GT---ATAA-TATATGT-T-AAAGACAGGACCACGATGT-AA-AACTAGT---T-TG-TAT-AAA-TAAgt
gi|9 : acaatacatggagacaTTC--TGTA-------TTACC--GAATACAGAA-----TAT---------C-TGTGATAA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT------------TA------TAT----GT---A----TATATAT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGG-TTAAATAAAGG--TCATT-ATTATTAT
Alignments
lowQualScore : 1 1 1 3333 1 22 222222 1 111 1 1 1 44444 3333 1 2 1 333333 1 1 111 1 1 3333333333 333333333333333 11 11 1 22 5555555555555555555555555555555 11 2222222222222 1 6666666666666666666666 33333333333333 1 11 11 1 222222 11 1 11 1 1 6666666666666666666 33333333 2222222 22222222222 1 1 1 2222222 1 22 11 1 11 1 55555555555555555 1111 111 111 2222 1 11 11 3333333333 11 1111111 111 2222222 222222 1 11 111 2 2222222 22 1 1 11 2222 1 1 1 22 111 1 1 333333 1 111 11 11 11 4444444444444 11 11 11 111111 22222 33333 1111 22222222222 1111 222222222 2 7777777777777777777777777777 222222 1 222 1 111 1 111111 3333 11 22 111 22 111 1 4444444444 11 111111 1 1 1 1 2222 111 1 1111 11 8888888888888888 3333333 1 111 222 3333 111 1 111 1 1 1 1 22222222 8888888888888888888888888888 11 222222 222222222 2222222222 1 22222222 22222222222222222222 2222 11 1 11
lowQualScore : 5 1 5 6 3 1111 3 6 00 1 6 333333 3 7 333 1 2 2 2 22222 0000 6 6 6 2 6 1 6 3 7 555555 6 3 3 333 0 0 7 3333333333 666666666666666 66 3 00 0 1 33 8888888888888888888888888888888 00 0 11 8888888888888 0 1 6666666666666666666666 33333333333333 8 0 33 66 0 888888 1 22 0 33 0 0 0 1111111111111111111 55555555 0 3 9999999 77777777777 0 0 0 8888888 3 0 0 33 99 0 3 33 0 3 55555555555555555 3333 1 9 3 777 111 3 4444 0 0 999 0 33 11 0000000000 3 33 2 4444444 777 7 3333333 0 3 3 999 888888 0 33 777 0 0000000 3 55 0 0 2 1 3 3 9 33 1111 0 0 0 3 55 000 0 0 3 111111 0 55 444 33 22 33 5555555555555 33 00 00 0 333333 44 3 4 22 55555 11111 6666 00000000000 3 5555 444444444 0 7777777777777777777777777777 4 888888 6 3 555 3 7 6 999 1 3 888888 9999 55 55 7 7 6 777 33 111 0 3333333333 6 1 33 0 333333 0 8 8 3 8 33 0 7 0 0 3 0 2222 777 3 6 6 5 2222 44 0000000000000000 3 8888888 2 666 333 3333 333 7 7 7 7 3 6 777 6 2 3 0 3 2 0 9 0 8 8 0 8 0 3 8 0 66666666 8 8 7777777777777777777777777777 88 99 000000 1 1 777777777 5 6 9999999999 2 44444444 77 5 11111111111111111111 9999 777 2222 4 7 88 3 2 666 3 3 88 1 99 3 55 3
lowQualScore : . . . . . .... . . .. . . ...... . . ... . . . . ..... .... . . . . . . . . . ...... . . . ... . . . .......... ............... .. . .. . . .. ............................... .. . .. ............. . . ...................... .............. . . .. .. . ...... . .. . .. . . . ................... ........ . . ....... ........... . . . ....... . . . .. .. . . .. . . ................. .... . . . ... ... . .... . . ... . .. .. .......... . .. . ....... ... . ....... . . . ... ...... . .. ... . ....... . .. . . . . . . . .. .... . . . . .. ... . . . ...... . .. ... .. .. .. ............. .. .. .. . ...... .. . . .. ..... ..... .... ........... . .... ......... . ............................ . ...... . . ... . . . ... . . ...... .... .. .. . . . ... .. ... . .......... . . .. . ...... . . . . . .. . . . . . . .... ... . . . . .... .. ................ . ....... . ... ... .... ... . . . . . . ... . . . . . . . . . . . . . . . . . ........ . . ............................ .. .. ...... . . ......... . . .......... . ........ .. . .................... .... ... .... . . .. . . ... . . .. . .. . .. .
lowQualScore : 5 0 5 7 3 0000 3 7 00 0 7 000000 3 3 777 0 0 0 0 00000 7777 7 7 7 0 7 0 7 3 3 000000 7 3 3 777 0 5 0 5555555555 888888888888888 00 2 00 0 0 88 8888888888888888888888888888888 22 2 55 0000000000000 0 0 8888888888888888888888 55555555555555 8 0 22 55 0 888888 0 55 0 88 0 0 2 2222222222222222222 22222222 2 2 5555555 55555555555 0 0 0 0000000 2 0 8 88 22 0 2 88 0 2 55555555555555555 5555 0 8 2 555 000 2 8888 0 2 000 8 88 22 8888888888 2 22 5 8888888 555 0 5555555 8 2 2 222 888888 0 88 555 0 2222222 5 55 0 0 5 0 2 2 2 22 2222 0 0 0 2 55 888 0 0 2 555555 0 88 000 88 00 88 0000000000000 88 22 22 2 888888 00 2 2 88 00000 00000 0000 88888888888 2 0000 555555555 0 0000000000000000000000000000 0 333333 7 3 000 3 3 7 000 0 3 000000 0000 77 33 3 3 7 555 88 000 0 8888888888 5 0 88 2 222222 8 0 0 2 8 55 0 0 0 0 2 0 5555 555 2 5 7 5 0000 77 3333333333333333 7 3333333 0 777 333 0000 777 3 3 3 3 3 7 777 7 0 3 7 2 5 0 8 8 0 0 8 0 0 2 0 8 88888888 0 0 5555555555555555555555555555 33 33 111111 9 7 999999999 7 7 2222222222 0 22222222 99 0 66666666666666666666 4444 888 9999 4 3 22 6 1 444 6 6 00 4 88 6 00 6
consensus : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT-TT--AACAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATAG--GACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAACACATTG------TA-TG--TTAAT---TA-GGAACTTCTCAGAAANTATT-GAAAT-GTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTC----TT-AGAAAA-TGTAAATT-GTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
Reference ( family-102 ) : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT-TTTAAACAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTG-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATAG--GACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAACACATTG------TA-TG--TTAAT---TA-GGAACTTCTCA-AAATTATT-GAAAT-GTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTC----TT-AGAAAA-TGTAAATT-GTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A-----TAATTAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGNACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|1 : TTTCCATGTCAATAATTATA-GACCTG-TATCTGT-TTTGCCTAT-CA-TAAGCAAAATTTTGGAAAGACGATGT-TTTACA--CACTTTTTAC-GA-ATTTGAGTGAAAA-CATAAACT-TT--AACAG----AACATCAGTCGGGTTTCAGACCAAAACATTCATGTGAAACTGCT-TTACATAATAT-CATTGATGAAA-AT-GGC-TTGAAAACATTGATAAAG---GT-----AAACTTTA-CAGGGT--GT-AATTTTTATCGATTTAAGCAAAGCATTT-ATAC--AGTCAA--T----CA--TG-AT-GTTCTGTTGCACA-GAC-TTCTAATCT-----TTTGTGATATAT-GTGAAAAT-A--CTTTCAAAGTTTCAC--TCTAA-AAAATGTA-TC--TACAT-GCT-AGATC-ACAAT-GTG------TCAAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAAA--------------TG---TTACAATCGGAGTTC-----GCCTTCAAGGCTCTAT-ACTT--GGTCCT-----TTG---TTT-TTAT-TCTTTT-TG--TA--GATGACTTATCTA-AATGTTTG-AAG-C-AT--TTACTAGTCAATATA-TATGCAGGAT-----GATAA-CCACGCAAGATG-TT---CTGA-TGAAGTCTTTGG-A--GTGAA-GAGAAAAAATTA-ACAA--GACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--GCCA-AAAAAA---TAAACTT-C--AC-TATAAA-TTTGAAGAAAACACATTG------TA-TG--TTAAT---TAGGGAACTTCTCAGAAATTATT-GAAAT-GTA-AAAACTTTGTTGTAATGTAAGGGGAAAAATTTC----TT-AGAAAACTGTAAATT-GTGCT-AAACTT-CTGGGTG-TTATATATTGA-----TTGAC-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATC-CAA-GAATACT-TA-GTCAAAAACTAGGTGTTTTAAGGTA-----GATTG-GT--AATT--TGATGTCCAA---AGA--C--ACTAC--TCAAAA----T-T-GTACAA-TACCATAGTATCCCCCCCTCCCACATT-ATA-A------ACTGAT---T-GTTGTA-CGGTAT--GGCATG-ATGCCCAGGAAAC-AAACAA-A-TA-CACTGTATC-ACGTA-GGCTT-TTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATTGT-TAGACAT-C----------AGAGTACC--TCAGTCAGTTT--GTCAACTT-T-AATAT-TTATC-AG-CTTGAGATGGATGCCCATG-CA-GACTATTTCAATATA-TCG-G--AAAT---TATTTCTTATCTTCAAAGTTTTACATTAGT---ATGACACC-AGAGTA----------------TTTTTCG----G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG---TGTTAGTAAATTTTATTTATGTTTACAAAAGCC-AGAA-CGAATATT-TCCAAAAGAGTTCTTTT-TCATTTCAGCAGCAATTTTATGGAATTCATTGCCAGATTTATATTAGGGAATGT-AGAGCTTTGAACTTCTTTTA-GATCAGCCCTACCTTAAAACATTATTTTGATAC-------TCGATA-A-TACTCAG----------------------------CTA--GTTCT-TAT--CT--GTATATAGAATAC--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATGCATT---------T--TA------TAT-----T---AT---CATATGT-TTAAAGACAGGACCACAATGT-GATAACTA-T---T-TT-TAT-AAACTAAATCGTTGCAATCCTGT-TTAAATAAAGG--TCAT---TTATTAT
gi|10 : AGAA---TCC-ATT-T-TAGACAT-C----------AGAGTACC--TCATTCAT--T--GTCAACTT-TTAATATGTTATCAAG-CTTGAGATGGATGCCCATGCCA-GACTATCTC-ATATA-TCGTA--AAAT---TA-TTCTTATCTTCAAAGTTTTa
gi|11 : ATG-ATT---------TA-TA------TGTACTCGC---AT----AGATGT-TTAAAGATAAGACCACAA---------CTAGT---T-TT-TAT-AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|12 : atgtgcagatata--TGCAAG-GTT---------AA-TAA-----TAT----GT---AT----ATATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAAC-AAATTG-TGCAAACCTGT-TTAAATAAAGG--TCATT-ATTAATATt
gi|13 : aaT---------TA-TA------T-T----GT---AT----ATATGT-T--AAGACAGGACCA--ATGTTAA-AACTAGT---T-TT-TATAAAACT-AATTGTTGCAATACTGTCTTAAAAAAAGT--TCATTAATTATTATt
gi|14 : --T--GTCAACTTGT-AACATGTTATTAAA-CTTAAGATGGATGTCCATGTCA-GACTATTTT-ATCTA-TTGGA--AAAT---TATTATGTACTTTCA
gi|15 : ACAGAACCACATTGT-AA-A-CTAGTATAT-TT-TA-----CTAAATA--TGCCACCCTGT-CTAAATAAAGA----AT---TTATTAT
gi|16 : ACAGGACCAAAAGGT-AA-A-CTAGT---T-TG-TA--AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TTATT-ATT
gi|17 : ACTAAAT-GT-GCCATCCTGT-CTAAGTAAAGAATTTATT-ATTA
gi|2 : tattttTTTCCATATCA-TAAATATAAGACCTGGTATCTGTGTTTACCTATTCAATAAA-GAAGTTTGTGAAAGA---TATGTTTATA--C-CCTTTTAC-GGTGTCTG-TTGAAGAACA-AAGCTGTTTAAACAAT---AGCATCAGTCGT--TCCAGACCAAA--ATGCATGCGATACTG-T-TGACATAATATGCAT-AAT--AA-ATAGGCGTTGAGAC-AT-GCTAAAG---GTGGGGAAAGCTTGGGCAGCGTTTGTTAATTTTTATTGATCTAAGCAA-GTATTT-GGACCCAGTCAAGAT----CA--G--AT-ATTTTGTG---CACAAG-TTTCATGCT-----TT-GCGG-ATAT-GTTGAAAT-GGGCC--C----TCTA----TCTGACA---TGTG------A-AT-GCTGAGAGT-GCAAT-GTGACCGCCTCTAATGGGAAAGGGAC-AGC--TCGGAAAGAGAGAAGAGGGAAAGTGTATACTG---TTACAATCTGAGTTCCTCAAACCCTCAAGCGTCTATTA--T--GGTCCTCGTAATTT---TTT-TTGT-TCTTTTATGGGTAATGATGAC-TATCCTAAATGTTTTTAAA-CAAT--CTAC-AGTCAA--------------------GATA---CTTGCAAG-TGTTT---CTGAAT-AAGTCTTTGG-AATGTGAA-GAGGAAGAAG-----AG--GAC-ATCTATAA--A-----TGTATATGTTAATGGAT--G-CAGAAAAAA---CAAAC-T-A--ACTTATAAATTTTGAAGAAAACAAAATG------TA-TG--TTTAA---TA-GGAGCATCACAGAAAGTAT---GAAT-TTAGAAAACTGTG-TGAAATGGTAGGTG--AATTTTC----TT-AGAAAA-TGTAAATT-GTGC----AC-T-CGGGATGATT-TATA-TGA-------GAA-TGTCTTACATCTCGTCAATCAT-AC--ACG---G---GTTGATTTT--ATGTCAA-CAACATT-GA-TGC--AAACTAGTGGTATTAAAGTAAGTATAATTG-ATAAAATTC-TGAGGTCCAAAACAAG--C--ACT-C--TTGAAA----TATAATACAATTACCATAGTAT---------CCACA---ATG--------AATTAT---TAGTT-TA-CGGTAT---GCATG-A-GCC--AAGAAC-AAACAATACCA-CATGGTATCAA--TACAGATTGCTTAAA-TACAAAAC-AGAGCAGGAAGGA---TCAAATT-T-TAGACACACCTTACAAAGAAAAGCACC--TCGATCAA--TGAGTACAC-T-T-AAC-TCTTATAAAATCTTGAGATGGATGCCCATTTCAGGACTATTTT-A-ATACTCGAGACAGATCGATATTT-TTGTCTTCAAG--TTTACA-TGGTGTAATGACACTAAGAGTATTTGTAAAATTG----TTTTTTGAT--AGTTGTAATGAGG-TATCCACAGATAGGAATATAAAACAAAGTCTTGTTTGTAAA-TTTA-TTACG-TTAC-AAAGCCAAAAACCGAGCATTGT-CAACAGAATC----T-TCATTAAGGCAGCAATTTTTTGGAATTC-TTG-CAGATTT-TA-TAGAGAA-GTAAAAAATTTG-AC--CTTCTATAATCAGCCTAACTTC-CAACATAA--TTGGTAC--------CAATATACTACTCG----------------------------TCTAATGTTC--TAT---TGAGAATATAAAGTAT--------TT-TGTGA
gi|3 : aAAAA-ATTAA-AAAGAGGGT-----AAATTCTC-C-------GC-AATGTTTAT-GGTCTAATTAAAG--TTA-AAACA-GGTCGA--TAAAACAATT--ATTACTCTGC----CA-GATATTACAGGCT-----CCTGT----CATCGTTGAAA------C--TAAAGTTTTCACCTCTAG-G---CTTATCC--TACAT-GCT-AGATC--TAACAGTG------TCAAATGG-AAAGGGTCCATC--TCAGAA-GA-GAAAGA--------------TG---TTACAATCGGAGTCC-------CCTC--GGCTCTAT-A--TTGGGTCCT-----TTTGCTTTTATTAT-TCTTTT-TG---------G------TC--AATGCTTT-GAAGCAATTCCTAC-AGTCAATATACTAT-C--GACTCATCGATAATCCACGCAAGATGTTTTTTCTGA-T-AAGTCTTTGGCAT-GTGATTGAGAAAGAATTACATAG--TACGATCTTTTATAA-----T-TC-AT-TGAATGGATTCG-CA-AAAAAAAAATAAACCT-CGCAC-TACAAATTTTGAAGAAA-CACATTCACAAATTA-TGGATTAAT---TA-GGGACTTCTCT-AAAATATTCGAAAT-GTA-AAAACTTTGTGAAAATGTAAGGGG-AAAATTTC----TTCAGAGAA-TGTAAATT-G-GCTAAAACTTACTGGGTG-TT-TATATTGAAATGTCTGAACTGT-TTGCG--TGGTC--TCATCACTTACG---GGAAA-TGT-TTT--ATG-CAAGGAACACT-TAGTCCAGAAACTAGGTGTTTTAAG--A-----GATTGAGT--AATTCTTTATGTCAAA---AGAAGC--ACTACCTCCAAAA----T-T-TAACAAGTACCATAGTAT---------TCACATTAATGCATGTCTTAATCATATGTA-TTGTATCGGTATTGGGCATGTATG-C--AGTAACAAAACAA-A-TATCACTAGATC----TATTGCTT--TTAAATTACATAACAAGA-CAGCAAGGAAATTC--ATT-TGTAGACAT-C----------A-ATAACCGATCAGTCAG--T--GTCAACTC-T-
gi|4 : GTGTCTGT-TGTGCCTAT---GTCAG-AAAATATTG--AAGAC-ATCTGTTCACAATCAT-TTTTACTGATATCTCAT---ACAGCACAA-CT-----AATAGTGAAAAAAACAGTCATGTTC-AGGC---AGCAT-CAAGCGAGACAGCTCTTTCA--GTAT------ATGAAACAT-GGT-ACGAAAA-ATCGACAATG---AG-----AAACT----AAGTGT--CT-TATTTGTA--GATTTAAGTAAAGCTTTTGACAC--GGTAAA--T----CA--TCAGG-ATT-----------GAC-TCCCAAACTATGTTTTTG-GA-ATAT-GTGAAAATCA--TA--CAA---TTG----TTTAA-A---TATA-CTGTTAAATAGC----ATCAGCAAT-GTG------TTTGATG--AATGGATG-TTCAGTCAGAT-AA-ATACGA--------------TAGGATGACAATAGGAGT-------ACCATAAAGGCGTCAA-A--TA-GGTCCT-----TGT---TTT-TTATATCTCTA-TG--TA--AATGAC-TACCC--GCTGCTT--ACA-CACT--CTAC-AGTCCATATG-TATGC---AT-----GA--A-CACCGCAAGTTGTTT---CGGA-T-AAAAGTT--G-A--TTGTA-TAAAAGCAATTACATAGTGGA------TTTA--AAATACT-TCTG---GAATG-AT--G-AG-ATAAAA---CAAACTTAC--A-----AAATCTTAACAAAAACG---TG------CAGTG--ATAATATGTACAGAAT-----A-AAGTTAA--GAAATTGCA-GAAA--GTATTGA--TG-AAGTGG-ATGATATCACAATT-TGAAAA-TGTATCTTTGTGC--AAATTA-CTTGGTG-TT-TATATTGA-----CTAGA-TG-CTCACT--TGGTC--TGA--AC--ATGCTTG---A-AA--TTTTAAAA-AAA-AAAAACTGCA-AGCAAAA--TAGGCGTTTTAATGTT-----GATTACG-----TTC--AATGTACAC---CGA--CTTTTTAC--T-GAAATTTTT-T-ATACAA-Tttata
gi|5 : caTGTA-TGACACCA-GAGTAT--------TTGAATGTTTTTAGATTTG--TGA-ATGA-GATATCCACA---AGAAATACAAGACAAAG--T-GTTAGTA--TTTTATTTACGTT-ACAAAAGCC-AAAACAGAATATT-T-CAAAA-AATCTTTTTATCATTTCAGCAGCAATGTTATGGAATTCATTGCCAGATTT-TAATAGAGAATGT-GCAACTGTA-ACTTCTTTTA-GATCAG-CCTATCTT-AAACATTATTTTGATACTCAATAGTCAATA-A-TACTCAAG-TGTTTATGATCTCTATTGAGGTGCATTTA--GTTCT-TAT--CT--GTATATAGAATA---------TC-TGTAATAA-TTTCAT----------GTTG-TAT--------GA--TGTATG-TTT---------TA-TA------TAT----GTATAAT---TATATGT-T---------------AAT----A-AACTAGT---T-CG-TA--AAACT-AATTG-TGCAATCCTGT-ATAAATAAAGG--TTATT-GTTATTAT
gi|6 : catAATTCATTGCCAGATTT-TATTAGGGATTGC-AGAACTTTG-ACTTCTTTTA-GATCAG-CCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG---------------------------CGA--GTTCT-TAT--CT--GTATATAGAATA---------TC-TGTGATGA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------TA-TATATATGTAT----AT---AT---TGTATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|7 : GAATGT-AGAACTTTG-ACTTCTTTTA-GATCGGCC-TACCTT-GAACATCATTTTGACAC-------TCAATA-A-TACTCAAATT------------------------TCTATGGTTAC-TAT-------TAAAAAGAGTATAGTTGTTATC-TGTGATAATTTTCAT----------GCTG-TGT--------GA--TGTATG-TTT---------TA-CA------TGT----AT---ATATGTATATGTGTTAAAGACAGGACCACTATGT--G-AACT--T---TATTGTAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAAG--TTATT-AT
gi|8 : CAAA-T------------------------TTTA--ATTTG-CAT--AT--GGA-ACGGAATAT--------TCCTATAATGA-TTTCATATCTTAACTGGTTCCTGTAATCTTCAGGATTATATA-ATTGGCAAAGTTTAATA------TAT----GT---ATAA-TATATGT-T-AAAGACAGGACCACGATGT-AA-AACTAGT---T-TG-TAT-AAA-TAAgt
gi|9 : acaatacatggagaTTCTGTATTACC--GAATACAGAATAT---------C-TGTGATAA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT------------TA------TAT----GT---A----TATATAT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGG-TTAAATAAAGG--TCATT-ATTATTAT
Alignments
lowQualScore : 1 1 1 3333 1 22 222222 1 111 1 1 22222 1 3333 1 2 1 333333 1 1 111 1 1 3333333333 333333333333333 11 11 1 22 5555555555555555555555555555555 11 2222222222222 1 6666666666666666666666 33333333333333 1 11 11 1 222222 11 1 11 1 1 6666666666666666666 33333333 2222222 22222222222 1 1 1 2222222 1 22 11 1 11 1 55555555555555555 11 111 111 2222 1 11 11 3333333333 11 1111111 111 2222222 11 555555 333333333 11 1 1111 111 11 1 1 1 22 111 1 1 333333 1 111 11 11 11 4444444444444 11 11 11 111111 22222 33333 1111 22222222222 1111 222222222 2 6666666666666666666666666666 222222 1 222 1 111 1 111111 3333 11 22 111 22 111 1 4444444444 11 111111 1 1 1 1 2222 111 1 1111 11 8888888888888888 3333333 1 111 222 3333 111 1 111 1 1 1 1 22222222 8888888888888888888888888888 11 222222 222222222 2222222222 1 22222222 22222222222222222222 2222 11 1 11
lowQualScore : 5 1 5 6 3 1111 3 6 00 1 6 333333 3 7 333 1 2 2 77777 3 0000 6 6 6 2 6 1 6 3 7 555555 6 3 3 333 0 0 7 3333333333 444444444444444 66 3 00 0 1 33 8888888888888888888888888888888 00 0 11 8888888888888 0 1 6666666666666666666666 33333333333333 8 0 33 66 0 888888 1 22 0 33 0 0 0 1111111111111111111 55555555 0 3 9999999 77777777777 0 0 0 8888888 3 0 0 33 99 0 3 33 0 3 55555555555555555 3 33 1 9 3 777 111 3 4444 0 0 999 0 33 11 0000000000 3 33 2 4444444 777 7 3333333 0 3 3 33 3 000000 333333333 33 0 66 3 1 6666 000 44 9 999 2 33 2 0 0 0 3 55 000 0 0 3 111111 0 55 444 33 22 33 5555555555555 33 00 00 0 333333 44 3 4 22 55555 11111 6666 00000000000 3 5555 444444444 0 6666666666666666666666666666 1 888888 6 3 555 3 7 6 999 1 3 888888 9999 55 55 7 7 6 777 33 111 0 3333333333 6 1 33 0 333333 0 8 8 3 8 33 0 7 0 0 3 0 2222 777 3 6 6 5 2222 44 0000000000000000 3 8888888 2 666 333 3333 333 7 7 7 7 3 6 777 6 2 3 0 3 2 0 9 0 8 8 0 8 0 3 8 0 66666666 8 8 7777777777777777777777777777 88 99 000000 1 1 777777777 5 6 9999999999 2 44444444 77 5 11111111111111111111 9999 777 2222 4 7 88 3 2 666 3 3 88 1 99 3 55 3
lowQualScore : . . . . . .... . . .. . . ...... . . ... . . . ..... . .... . . . . . . . . . ...... . . . ... . . . .......... ............... .. . .. . . .. ............................... .. . .. ............. . . ...................... .............. . . .. .. . ...... . .. . .. . . . ................... ........ . . ....... ........... . . . ....... . . . .. .. . . .. . . ................. . .. . . . ... ... . .... . . ... . .. .. .......... . .. . ....... ... . ....... . . . .. . ...... ......... .. . .. . . .... ... .. . ... . .. . . . . . .. ... . . . ...... . .. ... .. .. .. ............. .. .. .. . ...... .. . . .. ..... ..... .... ........... . .... ......... . ............................ . ...... . . ... . . . ... . . ...... .... .. .. . . . ... .. ... . .......... . . .. . ...... . . . . . .. . . . . . . .... ... . . . . .... .. ................ . ....... . ... ... .... ... . . . . . . ... . . . . . . . . . . . . . . . . . ........ . . ............................ .. .. ...... . . ......... . . .......... . ........ .. . .................... .... ... .... . . .. . . ... . . .. . .. . .. .
lowQualScore : 5 0 5 7 3 0000 3 7 00 0 7 000000 3 3 777 0 0 0 77777 3 7777 7 7 7 0 7 0 7 3 3 000000 7 3 3 777 0 5 0 5555555555 888888888888888 00 2 00 0 0 88 8888888888888888888888888888888 22 2 55 0000000000000 0 0 8888888888888888888888 55555555555555 8 0 22 55 0 888888 0 55 0 88 0 0 2 2222222222222222222 22222222 2 2 5555555 55555555555 0 0 0 0000000 2 0 8 88 22 0 2 88 0 2 55555555555555555 2 22 0 8 2 555 000 2 8888 0 2 000 8 88 22 8888888888 2 22 5 8888888 555 0 5555555 8 2 2 88 5 000000 555555555 88 0 00 2 0 5555 222 22 8 000 5 22 5 0 0 0 2 55 888 0 0 2 555555 0 88 000 88 00 88 0000000000000 88 22 22 2 888888 00 2 2 88 00000 00000 0000 88888888888 2 0000 555555555 0 7777777777777777777777777777 0 333333 7 3 000 3 3 7 000 0 3 000000 0000 77 33 3 3 7 555 88 000 0 8888888888 5 2 88 2 222222 8 0 0 2 8 55 0 0 0 0 2 0 5555 555 2 5 7 5 0000 77 3333333333333333 7 3333333 0 777 333 0000 777 3 3 3 3 3 7 777 7 0 3 7 2 5 0 8 8 0 0 8 0 0 2 0 8 88888888 0 0 5555555555555555555555555555 33 33 111111 9 7 999999999 7 7 2222222222 0 22222222 99 0 66666666666666666666 4444 888 9999 4 3 22 6 1 444 6 6 00 4 88 6 00 6
consensus : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACANTGACAA--TATG--T------TAA--TTA-GGAACTTCNCAGAAAGTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
Reference ( family-102 ) : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACATTG------TATG--T------TAA--TTA-GGAACTTCTCAGAAANTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|1 : TTTCCATGTCAATAATTATA-GACCTG-TATCTGT-TTTGCCTAT-CA-TAAGCAAAATTTTGGAAAGACGATGT-TTTACA--CACTTTTTAC-GA-ATTTGAGTGAAAA-CATAAACT--TTAA-CAG----AACATCAGTCGGGTTTCAGACCAAAACATTCATGTGAAACTGCT-TTACATAATAT-CATTGATGAAA-AT-GGC-TTGAAAACATTGATAAAG---GT-----AAACTTTA-CAGGGT--GT-AATTTTTATCGATTTAAGCAAAGCATTT-ATAC--AGTCAA--T----CA--TG-AT-GTTCTGTTGCACA-GAC-TTCTAATCT-----TTTGTGATATAT-GTGAAAAT-A--CTTTCAAAGTTTCAC--TCTAA-AAAATGTA-TC--TACAT-GCT-AGATC-ACAAT-GTG------TCAAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAAA--------------TG---TTACAATCGGAGTTC-----GCCTTCAAGGCTCTAT-ACTT--GGTCCT-----TTG---TTT-TTAT-TCTTTT-TG--TA--GATGACTTATCTA-AATGTTTG-AAG-C-AT--TTACTAGTCAATATA-TATGCAGGAT-----GATAA-CCACGCAAGATG-TT---CTGA-TGAAGTCTTTGG-A--GTGAA-GAGAAAAAATTA-ACA--AGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--GCCA-AAAAAA---TAAACTT-C--AC-TATAAA-TTTGAAGAAAAC--ACATTG------TATG--T------TAA--TTAGGGAACTTCTCAGAAATTATT-GAAATGTA-AAAACTTTGTTGTAATGTAAGGGGAAAAATTTCTT-AGAAAACTGTA-AATTGTGCT-AAACTT-CTGGGTG-TTATATATTGA-----TTGAC-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATC-CAA-GAATACT-TA-GTCAAAAACTAGGTGTTTTAAGGTA-----GATTG-GT--AATT--TGATGTCCAA---AGA--C--ACTAC--TCAAAA----T-T-GTACAA-TACCATAGTATCCCCCCCTCCCACATT-ATA-A------ACTGAT---T-GTTGTA-CGGTAT--GGCATG-ATGCCCAGGAAAC-AAACAA-A-TA-CACTGTATC-ACGTA-GGCTT-TTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATTGT-TAGACAT-C----------AGAGTACC--TCAGTCAGTTT--GTCAACTT-T-AATAT-TTATC-AG-CTTGAGATGGATGCCCATG-CA-GACTATTTCAATATA-TCG-G--AAAT---TATTTCTTATCTTCAAAGTTTTACATTAGT---ATGACACC-AGAGTA----------------TTTTTCG----G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG---TGTTAGTAAATTTTATTTATGTTTACAAAAGCC-AGAA-CGAATATT-TCCAAAAGAGTTCTTTT-TCATTTCAGCAGCAATTTTATGGAATTCATTGCCAGATTTATATTAGGGAATGT-AGAGCTTTGAACTTCTTTTA-GATCAGCCCTACCTTAAAACATTATTTTGATAC-------TCGATA-A-TACTCAG----------------------------CTA--GTTCT-TAT--CT--GTATATAGAATAC--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATGCATT---------T--TA------TAT-----T---AT---CATATGT-TTAAAGACAGGACCACAATGT-GATAACTA-T---T-TT-TAT-AAACTAAATCGTTGCAATCCTGT-TTAAATAAAGG--TCAT---TTATTAT
gi|10 : AGAA---TCC-ATT-T-TAGACAT-C----------AGAGTACC--TCATTCAT--T--GTCAACTT-TTAATATGTTATCAAG-CTTGAGATGGATGCCCATGCCA-GACTATCTC-ATATA-TCGTA--AAAT---TA-TTCTTATCTTCAAAGTTTTa
gi|11 : ATG-ATT---------TA-TA------TGTACTCGC---AT----AGATGT-TTAAAGATAAGACCACAA---------CTAGT---T-TT-TAT-AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|12 : atgtgcagatata--TGCAAG-GTT---------AA-TAA-----TAT----GT---AT----ATATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAAC-AAATTG-TGCAAACCTGT-TTAAATAAAGG--TCATT-ATTAATATt
gi|13 : aaT---------TA-TA------T-T----GT---AT----ATATGT-T--AAGACAGGACCA--ATGTTAA-AACTAGT---T-TT-TATAAAACT-AATTGTTGCAATACTGTCTTAAAAAAAGT--TCATTAATTATTATt
gi|14 : --T--GTCAACTTGT-AACATGTTATTAAA-CTTAAGATGGATGTCCATGTCA-GACTATTTT-ATCTA-TTGGA--AAAT---TATTATGTACTTTCA
gi|15 : ACAGAACCACATTGT-AA-A-CTAGTATAT-TT-TA-----CTAAATA--TGCCACCCTGT-CTAAATAAAGA----AT---TTATTAT
gi|16 : ACAGGACCAAAAGGT-AA-A-CTAGT---T-TG-TA--AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TTATT-ATT
gi|17 : ACTAAAT-GT-GCCATCCTGT-CTAAGTAAAGAATTTATT-ATTA
gi|2 : tattttTTTCCATATCA-TAAATATAAGACCTGGTATCTGTGTTTACCTATTCAATAAA-GAAGTTTGTGAAAGA---TATGTTTATA--C-CCTTTTAC-GGTGTCTG-TTGAAGAACA-AAGCTGTTTAAACAAT---AGCATCAGTCGT--TCCAGACCAAA--ATGCATGCGATACTG-T-TGACATAATATGCAT-AAT--AA-ATAGGCGTTGAGAC-AT-GCTAAAG---GTGGGGAAAGCTTGGGCAGCGTTTGTTAATTTTTATTGATCTAAGCAA-GTATTT-GGACCCAGTCAAGAT----CA--G--AT-ATTTTGTG---CACAAG-TTTCATGCT-----TT-GCGG-ATAT-GTTGAAAT-GGGCC--C----TCTA----TCTGACA---TGTG------A-AT-GCTGAGAGT-GCAAT-GTGACCGCCTCTAATGGGAAAGGGAC-AGC--TCGGAAAGAGAGAAGAGGGAAAGTGTATACTG---TTACAATCTGAGTTCCTCAAACCCTCAAGCGTCTATTA--T--GGTCCTCGTAATTT---TTT-TTGT-TCTTTTATGGGTAATGATGAC-TATCCTAAATGTTTTTAAA-CAAT--CTAC-AGTCAA--------------------GATA---CTTGCAAG-TGTTT---CTGAAT-AAGTCTTTGG-AATGTGAA-GAGGAAGAAG-----A--GGAC-ATCTATAA--A-----TGTATATGTTAATGGAT--G-CAGAAAAAA---CAAAC-T-A--ACTTATAAATTTTGAAGAAAAC--AAAATG------TATG--T------TTA--ATA-GGAGCATCACAGAAAGTAT---GAATTTAGAAAACTGTG-TGAAATGGTAGGTG--AATTTTCTT-AGAAAA-TGTA-AATTGTGC----AC-T-CGGGATGATT-TATA-TGA-------GAA-TGTCTTACATCTCGTCAATCAT-AC--ACG---G---GTTGATTTT--ATGTCAA-CAACATT-GA-TGC--AAACTAGTGGTATTAAAGTAAGTATAATTG-ATAAAATTC-TGAGGTCCAAAACAAG--C--ACT-C--TTGAAA----TATAATACAATTACCATAGTAT---------CCACA---ATG--------AATTAT---TAGTT-TA-CGGTAT---GCATG-A-GCC--AAGAAC-AAACAATACCA-CATGGTATCAA--TACAGATTGCTTAAA-TACAAAAC-AGAGCAGGAAGGA---TCAAATT-T-TAGACACACCTTACAAAGAAAAGCACC--TCGATCAA--TGAGTACAC-T-T-AAC-TCTTATAAAATCTTGAGATGGATGCCCATTTCAGGACTATTTT-A-ATACTCGAGACAGATCGATATTT-TTGTCTTCAAG--TTTACA-TGGTGTAATGACACTAAGAGTATTTGTAAAATTG----TTTTTTGAT--AGTTGTAATGAGG-TATCCACAGATAGGAATATAAAACAAAGTCTTGTTTGTAAA-TTTA-TTACG-TTAC-AAAGCCAAAAACCGAGCATTGT-CAACAGAATC----T-TCATTAAGGCAGCAATTTTTTGGAATTC-TTG-CAGATTT-TA-TAGAGAA-GTAAAAAATTTG-AC--CTTCTATAATCAGCCTAACTTC-CAACATAA--TTGGTAC--------CAATATACTACTCG----------------------------TCTAATGTTC--TAT---TGAGAATATAAAGTAT--------TT-TGTGA
gi|3 : aAAAA-ATTAA-AAAGAGGGT-----AAATTCTC-C-------GC-AATGTTTAT-GGTCTAATTAAAG--TTA-AAACA-GGTCGA--TAAAACAATT--ATTACTCTGC----CA-GATATTACAGGCT-----CCTGT----CATCGTTGAAA------C--TAAAGTTTTCACCTCTAG-G---CTTATCC--TACAT-GCT-AGATC--TAACAGTG------TCAAATGG-AAAGGGTCCATC--TCAGAA-GA-GAAAGA--------------TG---TTACAATCGGAGTCC-------CCTC--GGCTCTAT-A--TTGGGTCCT-----TTTGCTTTTATTAT-TCTTTT-TG---------G------TC--AATGCTTT-GAAGCAATTCCTAC-AGTCAATATACTAT-C--GACTCATCGATAATCCACGCAAGATGTTTTTTCTGA-T-AAGTCTTTGGCAT-GTGATTGAGAAAGAATTACATA--GTACGATCTTTTATAA-----T-TC-AT-TGAATGGATTCG-CA-AAAAAAAAATAAACCT-CGCAC-TACAAATTTTGAAGAAA-C--ACATTCACAAATTATGGAT------TAA--TTA-GGGACTTCTC-TAAAATATTCGAAATGTA-AAAACTTTGTGAAAATGTAAGGGG-AAAATTTCTTCAGAGAA-TGTA-AATTG-GCTAAAACTTACTGGGTG-TT-TATATTGAAATGTCTGAACTGT-TTGCG--TGGTC--TCATCACTTACG---GGAAA-TGT-TTT--ATG-CAAGGAACACT-TAGTCCAGAAACTAGGTGTTTTAAG--A-----GATTGAGT--AATTCTTTATGTCAAA---AGAAGC--ACTACCTCCAAAA----T-T-TAACAAGTACCATAGTAT---------TCACATTAATGCATGTCTTAATCATATGTA-TTGTATCGGTATTGGGCATGTATG-C--AGTAACAAAACAA-A-TATCACTAGATC----TATTGCTT--TTAAATTACATAACAAGA-CAGCAAGGAAATTC--ATT-TGTAGACAT-C----------A-ATAACCGATCAGTCAG--T--GTCAACTC-T-
gi|4 : GTGTCTGT-TGTGCCTAT---GTCAG-AAAATATTG--AAGAC-ATCTGTTCACAATCAT-TTTTACTGATATCTCAT---ACAGCACAA-----CTAA-TAGTGAAAAAAACAGTCATGTTC-AGGC---AGCAT-CAAGCGAGACAGCTCTTTCA--GTAT------ATGAAACAT-GGT-ACGAAAA-ATCGACAATG---AG-----AAACT----AAGTGT--CT-TATTTGTA--GATTTAAGTAAAGCTTTTGACAC--GGTAAA--T----CA--TCAGG-ATT-----------GAC-TCCCAAACTATGTTTTTG-GA-ATAT-GTGAAAATCA--TA--CAA---TTG----TTTAA-A---TATA-CTGTTAAATAGC----ATCAGCAAT-GTG------TTTGATG--AATGGATG-TTCAGTCAGAT-AA-ATACGA--------------TAGGATGACAATAGGAGT-------ACCATAAAGGCGTCAA-A--TA-GGTCCT-----TGT---TTT-TTATATCTCTA-TG--TA--AATGAC-TACCC--GCTGCTT--ACA-CACT--CTAC-AGTCCATATG-TATGC---AT-----G--AA-CACCGCAAGTTGTTT---CGGA-T-AAAAGTT--G-A--TTGTA-TAAAAGCAATTACATAGTGGA------TTTA--AAATACT-TCTG---GAAT-GAT--G-AG-ATAAAA---CAAACTTAC--A-----AAATCTTAACAAAAACGTGCAGTGATAA--TATG--TACAGAATAAAGTTA-AGAAATT-GCAGAAAGTATT-G--ATG-----AAGTG-GATGATAT-------C-ACAATTT-----GAAAA-TGTATCTTTGTGC--AAATTA-CTTGGTG-TT-TATATTGA-----CTAGA-TG-CTCACT--TGGTC--TGA--AC--ATGCTTG---A-AA--TTTTAAAA-AAA-AAAAACTGCA-AGCAAAA--TAGGCGTTTTAATGTT-----GATTACG-----TTC--AATGTACAC---CGA--CTTTTTAC--T-GAAATTTTT-T-ATACAA-Tttata
gi|5 : caTGTA-TGACACCA-GAGTAT--------TTGAATGTTTTTAGATTTG--TGA-ATGA-GATATCCACA---AGAAATACAAGACAAAG--T-GTTAGTA--TTTTATTTACGTT-ACAAAAGCC-AAAACAGAATATT-T-CAAAA-AATCTTTTTATCATTTCAGCAGCAATGTTATGGAATTCATTGCCAGATTT-TAATAGAGAATGT-GCAACTGTA-ACTTCTTTTA-GATCAG-CCTATCTT-AAACATTATTTTGATACTCAATAGTCAATA-A-TACTCAAG-TGTTTATGATCTCTATTGAGGTGCATTTA--GTTCT-TAT--CT--GTATATAGAATA---------TC-TGTAATAA-TTTCAT----------GTTG-TAT--------GA--TGTATG-TTT---------TA-TA------TAT----GTATAAT---TATATGT-T---------------AAT----A-AACTAGT---T-CG-TA--AAACT-AATTG-TGCAATCCTGT-ATAAATAAAGG--TTATT-GTTATTAT
gi|6 : catAATTCATTGCCAGATTT-TATTAGGGATTGC-AGAACTTTG-ACTTCTTTTA-GATCAG-CCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG---------------------------CGA--GTTCT-TAT--CT--GTATATAGAATA---------TC-TGTGATGA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------TA-TATATATGTAT----AT---AT---TGTATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|7 : GAATGT-AGAACTTTG-ACTTCTTTTA-GATCGGCC-TACCTT-GAACATCATTTTGACAC-------TCAATA-A-TACTCAAATT------------------------TCTATGGTTAC-TAT-------TAAAAAGAGTATAGTTGTTATC-TGTGATAATTTTCAT----------GCTG-TGT--------GA--TGTATG-TTT---------TA-CA------TGT----AT---ATATGTATATGTGTTAAAGACAGGACCACTATGT--G-AACT--T---TATTGTAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAAG--TTATT-AT
gi|8 : CAAA-T------------------------TTTA--ATTTG-CAT--AT--GGA-ACGGAATAT--------TCCTATAATGA-TTTCATATCTTAACTGGTTCCTGTAATCTTCAGGATTATATA-ATTGGCAAAGTTTAATA------TAT----GT---ATAA-TATATGT-T-AAAGACAGGACCACGATGT-AA-AACTAGT---T-TG-TAT-AAA-TAAgt
gi|9 : acaatacatggagaTTCTGTATTACC--GAATACAGAATAT---------C-TGTGATAA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT------------TA------TAT----GT---A----TATATAT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGG-TTAAATAAAGG--TCATT-ATTATTAT
Alignments
lowQualScore : 1 1 1 3333 1 22 222222 1 111 1 1 22222 1 3333 1 2 1 333333 1 1 111 1 1 3333333333 333333333333333 11 11 1 22 5555555555555555555555555555555 11 2222222222222 1 6666666666666666666666 33333333333333 1 11 11 1 222222 11 1 11 1 1 6666666666666666666 33333333 2222222 22222222222 1 1 1 2222222 1 22 11 1 11 1 55555555555555555 11 111 111 2222 1 11 11 3333333333 11 1111111 111 2222222 11 444444 333333333 11 1 1111 111 11 1 1 1 22 111 1 1 333333 1 111 11 11 11 4444444444444 11 11 11 111111 22222 33333 1111 22222222222 1111 222222222 2 6666666666666666666666666666 222222 1 222 1 111 1 111111 3333 11 22 111 22 111 1 4444444444 11 111111 1 1 1 1 2222 111 1 1111 11 8888888888888888 3333333 1 111 222 3333 111 1 111 1 1 1 1 22222222 8888888888888888888888888888 11 222222 222222222 2222222222 1 22222222 22222222222222222222 2222 11 1 11
lowQualScore : 5 1 5 6 3 1111 3 6 00 1 6 333333 3 7 333 1 2 2 77777 3 0000 6 6 6 2 6 1 6 3 7 555555 6 3 3 333 0 0 7 3333333333 444444444444444 66 3 00 0 1 33 8888888888888888888888888888888 00 0 11 8888888888888 0 1 6666666666666666666666 33333333333333 8 0 33 66 0 888888 1 22 0 33 0 0 0 1111111111111111111 55555555 0 3 9999999 77777777777 0 0 0 8888888 3 0 0 33 99 0 3 33 0 3 55555555555555555 3 33 1 9 3 777 111 3 4444 0 0 999 0 33 11 0000000000 3 33 2 4444444 777 7 3333333 0 3 3 33 1 111111 333333333 33 0 33 3 0 6666 000 44 9 999 2 33 2 0 0 0 3 55 000 0 0 3 111111 0 55 444 33 22 33 5555555555555 33 00 00 0 333333 44 3 4 22 55555 11111 6666 00000000000 3 5555 444444444 0 6666666666666666666666666666 1 888888 6 3 555 3 7 6 999 1 3 888888 9999 55 55 7 7 6 777 33 111 0 3333333333 6 1 33 0 333333 0 8 8 3 8 33 0 7 0 0 3 0 2222 777 3 6 6 5 2222 44 0000000000000000 3 8888888 2 666 333 3333 333 7 7 7 7 3 6 777 6 2 3 0 3 2 0 9 0 8 8 0 8 0 3 8 0 66666666 8 8 7777777777777777777777777777 88 99 000000 1 1 777777777 5 6 9999999999 2 44444444 77 5 11111111111111111111 9999 777 2222 4 7 88 3 2 666 3 3 88 1 99 3 55 3
lowQualScore : . . . . . .... . . .. . . ...... . . ... . . . ..... . .... . . . . . . . . . ...... . . . ... . . . .......... ............... .. . .. . . .. ............................... .. . .. ............. . . ...................... .............. . . .. .. . ...... . .. . .. . . . ................... ........ . . ....... ........... . . . ....... . . . .. .. . . .. . . ................. . .. . . . ... ... . .... . . ... . .. .. .......... . .. . ....... ... . ....... . . . .. . ...... ......... .. . .. . . .... ... .. . ... . .. . . . . . .. ... . . . ...... . .. ... .. .. .. ............. .. .. .. . ...... .. . . .. ..... ..... .... ........... . .... ......... . ............................ . ...... . . ... . . . ... . . ...... .... .. .. . . . ... .. ... . .......... . . .. . ...... . . . . . .. . . . . . . .... ... . . . . .... .. ................ . ....... . ... ... .... ... . . . . . . ... . . . . . . . . . . . . . . . . . ........ . . ............................ .. .. ...... . . ......... . . .......... . ........ .. . .................... .... ... .... . . .. . . ... . . .. . .. . .. .
lowQualScore : 5 0 5 7 3 0000 3 7 00 0 7 000000 3 3 777 0 0 0 77777 3 7777 7 7 7 0 7 0 7 3 3 000000 7 3 3 777 0 5 0 5555555555 888888888888888 00 2 00 0 0 88 8888888888888888888888888888888 22 2 55 0000000000000 0 0 8888888888888888888888 55555555555555 8 0 22 55 0 888888 0 55 0 88 0 0 2 2222222222222222222 22222222 2 2 5555555 55555555555 0 0 0 0000000 2 0 8 88 22 0 2 88 0 2 55555555555555555 2 22 0 8 2 555 000 2 8888 0 2 000 8 88 22 8888888888 2 22 5 8888888 555 0 5555555 8 2 2 88 0 888888 555555555 88 0 55 2 2 5555 222 22 8 000 5 22 5 0 0 0 2 55 888 0 0 2 555555 0 88 000 88 00 88 0000000000000 88 22 22 2 888888 00 2 2 88 00000 00000 0000 88888888888 2 0000 555555555 0 7777777777777777777777777777 0 333333 7 3 000 3 3 7 000 0 3 000000 0000 77 33 3 3 7 555 88 000 0 8888888888 5 2 88 2 222222 8 0 0 2 8 55 0 0 0 0 2 0 5555 555 2 5 7 5 0000 77 3333333333333333 7 3333333 0 777 333 0000 777 3 3 3 3 3 7 777 7 0 3 7 2 5 0 8 8 0 0 8 0 0 2 0 8 88888888 0 0 5555555555555555555555555555 33 33 111111 9 7 999999999 7 7 2222222222 0 22222222 99 0 66666666666666666666 4444 888 9999 4 3 22 6 1 444 6 6 00 4 88 6 00 6
consensus : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACANTGACAA--TATG--T------TAA--TTA-GGAACTTCNCAGAAAGTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
Reference ( family-102 ) : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACANTGACAA--TATG--T------TAA--TTA-GGAACTTCNCAGAAAGTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|1 : TTTCCATGTCAATAATTATA-GACCTG-TATCTGT-TTTGCCTAT-CA-TAAGCAAAATTTTGGAAAGACGATGT-TTTACA--CACTTTTTAC-GA-ATTTGAGTGAAAA-CATAAACT--TTAA-CAG----AACATCAGTCGGGTTTCAGACCAAAACATTCATGTGAAACTGCT-TTACATAATAT-CATTGATGAAA-AT-GGC-TTGAAAACATTGATAAAG---GT-----AAACTTTA-CAGGGT--GT-AATTTTTATCGATTTAAGCAAAGCATTT-ATAC--AGTCAA--T----CA--TG-AT-GTTCTGTTGCACA-GAC-TTCTAATCT-----TTTGTGATATAT-GTGAAAAT-A--CTTTCAAAGTTTCAC--TCTAA-AAAATGTA-TC--TACAT-GCT-AGATC-ACAAT-GTG------TCAAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAAA--------------TG---TTACAATCGGAGTTC-----GCCTTCAAGGCTCTAT-ACTT--GGTCCT-----TTG---TTT-TTAT-TCTTTT-TG--TA--GATGACTTATCTA-AATGTTTG-AAG-C-AT--TTACTAGTCAATATA-TATGCAGGAT-----GATAA-CCACGCAAGATG-TT---CTGA-TGAAGTCTTTGG-A--GTGAA-GAGAAAAAATTA-ACA--AGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--GCCA-AAAAAA---TAAACTT-C--AC-TATAAA-TTTGAAGAAAAC--ACATTG------TATG--T------TAA--TTAGGGAACTTCTCAGAAATTATT-GAAATGTA-AAAACTTTGTTGTAATGTAAGGGGAAAAATTTCTT-AGAAAACTGTA-AATTGTGCT-AAACTT-CTGGGTG-TTATATATTGA-----TTGAC-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATC-CAA-GAATACT-TA-GTCAAAAACTAGGTGTTTTAAGGTA-----GATTG-GT--AATT--TGATGTCCAA---AGA--C--ACTAC--TCAAAA----T-T-GTACAA-TACCATAGTATCCCCCCCTCCCACATT-ATA-A------ACTGAT---T-GTTGTA-CGGTAT--GGCATG-ATGCCCAGGAAAC-AAACAA-A-TA-CACTGTATC-ACGTA-GGCTT-TTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATTGT-TAGACAT-C----------AGAGTACC--TCAGTCAGTTT--GTCAACTT-T-AATAT-TTATC-AG-CTTGAGATGGATGCCCATG-CA-GACTATTTCAATATA-TCG-G--AAAT---TATTTCTTATCTTCAAAGTTTTACATTAGT---ATGACACC-AGAGTA----------------TTTTTCG----G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG---TGTTAGTAAATTTTATTTATGTTTACAAAAGCC-AGAA-CGAATATT-TCCAAAAGAGTTCTTTT-TCATTTCAGCAGCAATTTTATGGAATTCATTGCCAGATTTATATTAGGGAATGT-AGAGCTTTGAACTTCTTTTA-GATCAGCCCTACCTTAAAACATTATTTTGATAC-------TCGATA-A-TACTCAG----------------------------CTA--GTTCT-TAT--CT--GTATATAGAATAC--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATGCATT---------T--TA------TAT-----T---AT---CATATGT-TTAAAGACAGGACCACAATGT-GATAACTA-T---T-TT-TAT-AAACTAAATCGTTGCAATCCTGT-TTAAATAAAGG--TCAT---TTATTAT
gi|10 : AGAA---TCC-ATT-T-TAGACAT-C----------AGAGTACC--TCATTCAT--T--GTCAACTT-TTAATATGTTATCAAG-CTTGAGATGGATGCCCATGCCA-GACTATCTC-ATATA-TCGTA--AAAT---TA-TTCTTATCTTCAAAGTTTTa
gi|11 : ATG-ATT---------TA-TA------TGTACTCGC---AT----AGATGT-TTAAAGATAAGACCACAA---------CTAGT---T-TT-TAT-AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|12 : atgtgcagatata--TGCAAG-GTT---------AA-TAA-----TAT----GT---AT----ATATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAAC-AAATTG-TGCAAACCTGT-TTAAATAAAGG--TCATT-ATTAATATt
gi|13 : aaT---------TA-TA------T-T----GT---AT----ATATGT-T--AAGACAGGACCA--ATGTTAA-AACTAGT---T-TT-TATAAAACT-AATTGTTGCAATACTGTCTTAAAAAAAGT--TCATTAATTATTATt
gi|14 : --T--GTCAACTTGT-AACATGTTATTAAA-CTTAAGATGGATGTCCATGTCA-GACTATTTT-ATCTA-TTGGA--AAAT---TATTATGTACTTTCA
gi|15 : ACAGAACCACATTGT-AA-A-CTAGTATAT-TT-TA-----CTAAATA--TGCCACCCTGT-CTAAATAAAGA----AT---TTATTAT
gi|16 : ACAGGACCAAAAGGT-AA-A-CTAGT---T-TG-TA--AAACTAA-TTGT-GCAATCCTGT-TTAAATAAAGG--TTATT-ATT
gi|17 : ACTAAAT-GT-GCCATCCTGT-CTAAGTAAAGAATTTATT-ATTA
gi|2 : tattttTTTCCATATCA-TAAATATAAGACCTGGTATCTGTGTTTACCTATTCAATAAA-GAAGTTTGTGAAAGA---TATGTTTATA--C-CCTTTTAC-GGTGTCTG-TTGAAGAACA-AAGCTGTTTAAACAAT---AGCATCAGTCGT--TCCAGACCAAA--ATGCATGCGATACTG-T-TGACATAATATGCAT-AAT--AA-ATAGGCGTTGAGAC-AT-GCTAAAG---GTGGGGAAAGCTTGGGCAGCGTTTGTTAATTTTTATTGATCTAAGCAA-GTATTT-GGACCCAGTCAAGAT----CA--G--AT-ATTTTGTG---CACAAG-TTTCATGCT-----TT-GCGG-ATAT-GTTGAAAT-GGGCC--C----TCTA----TCTGACA---TGTG------A-AT-GCTGAGAGT-GCAAT-GTGACCGCCTCTAATGGGAAAGGGAC-AGC--TCGGAAAGAGAGAAGAGGGAAAGTGTATACTG---TTACAATCTGAGTTCCTCAAACCCTCAAGCGTCTATTA--T--GGTCCTCGTAATTT---TTT-TTGT-TCTTTTATGGGTAATGATGAC-TATCCTAAATGTTTTTAAA-CAAT--CTAC-AGTCAA--------------------GATA---CTTGCAAG-TGTTT---CTGAAT-AAGTCTTTGG-AATGTGAA-GAGGAAGAAG-----A--GGAC-ATCTATAA--A-----TGTATATGTTAATGGAT--G-CAGAAAAAA---CAAAC-T-A--ACTTATAAATTTTGAAGAAAAC--AAAATG------TATG--T------TTA--ATA-GGAGCATCACAGAAAGTAT---GAATTTAGAAAACTGTG-TGAAATGGTAGGTG--AATTTTCTT-AGAAAA-TGTA-AATTGTGC----AC-T-CGGGATGATT-TATA-TGA-------GAA-TGTCTTACATCTCGTCAATCAT-AC--ACG---G---GTTGATTTT--ATGTCAA-CAACATT-GA-TGC--AAACTAGTGGTATTAAAGTAAGTATAATTG-ATAAAATTC-TGAGGTCCAAAACAAG--C--ACT-C--TTGAAA----TATAATACAATTACCATAGTAT---------CCACA---ATG--------AATTAT---TAGTT-TA-CGGTAT---GCATG-A-GCC--AAGAAC-AAACAATACCA-CATGGTATCAA--TACAGATTGCTTAAA-TACAAAAC-AGAGCAGGAAGGA---TCAAATT-T-TAGACACACCTTACAAAGAAAAGCACC--TCGATCAA--TGAGTACAC-T-T-AAC-TCTTATAAAATCTTGAGATGGATGCCCATTTCAGGACTATTTT-A-ATACTCGAGACAGATCGATATTT-TTGTCTTCAAG--TTTACA-TGGTGTAATGACACTAAGAGTATTTGTAAAATTG----TTTTTTGAT--AGTTGTAATGAGG-TATCCACAGATAGGAATATAAAACAAAGTCTTGTTTGTAAA-TTTA-TTACG-TTAC-AAAGCCAAAAACCGAGCATTGT-CAACAGAATC----T-TCATTAAGGCAGCAATTTTTTGGAATTC-TTG-CAGATTT-TA-TAGAGAA-GTAAAAAATTTG-AC--CTTCTATAATCAGCCTAACTTC-CAACATAA--TTGGTAC--------CAATATACTACTCG----------------------------TCTAATGTTC--TAT---TGAGAATATAAAGTAT--------TT-TGTGA
gi|3 : aAAAA-ATTAA-AAAGAGGGT-----AAATTCTC-C-------GC-AATGTTTAT-GGTCTAATTAAAG--TTA-AAACA-GGTCGA--TAAAACAATT--ATTACTCTGC----CA-GATATTACAGGCT-----CCTGT----CATCGTTGAAA------C--TAAAGTTTTCACCTCTAG-G---CTTATCC--TACAT-GCT-AGATC--TAACAGTG------TCAAATGG-AAAGGGTCCATC--TCAGAA-GA-GAAAGA--------------TG---TTACAATCGGAGTCC-------CCTC--GGCTCTAT-A--TTGGGTCCT-----TTTGCTTTTATTAT-TCTTTT-TG---------G------TC--AATGCTTT-GAAGCAATTCCTAC-AGTCAATATACTAT-C--GACTCATCGATAATCCACGCAAGATGTTTTTTCTGA-T-AAGTCTTTGGCAT-GTGATTGAGAAAGAATTACATA--GTACGATCTTTTATAA-----T-TC-AT-TGAATGGATTCG-CA-AAAAAAAAATAAACCT-CGCAC-TACAAATTTTGAAGAAA-C--ACATTCACAAATTATGGAT------TAA--TTA-GGGACTTCTC-TAAAATATTCGAAATGTA-AAAACTTTGTGAAAATGTAAGGGG-AAAATTTCTTCAGAGAA-TGTA-AATTG-GCTAAAACTTACTGGGTG-TT-TATATTGAAATGTCTGAACTGT-TTGCG--TGGTC--TCATCACTTACG---GGAAA-TGT-TTT--ATG-CAAGGAACACT-TAGTCCAGAAACTAGGTGTTTTAAG--A-----GATTGAGT--AATTCTTTATGTCAAA---AGAAGC--ACTACCTCCAAAA----T-T-TAACAAGTACCATAGTAT---------TCACATTAATGCATGTCTTAATCATATGTA-TTGTATCGGTATTGGGCATGTATG-C--AGTAACAAAACAA-A-TATCACTAGATC----TATTGCTT--TTAAATTACATAACAAGA-CAGCAAGGAAATTC--ATT-TGTAGACAT-C----------A-ATAACCGATCAGTCAG--T--GTCAACTC-T-
gi|4 : GTGTCTGT-TGTGCCTAT---GTCAG-AAAATATTG--AAGAC-ATCTGTTCACAATCAT-TTTTACTGATATCTCAT---ACAGCACAA-----CTAA-TAGTGAAAAAAACAGTCATGTTC-AGGC---AGCAT-CAAGCGAGACAGCTCTTTCA--GTAT------ATGAAACAT-GGT-ACGAAAA-ATCGACAATG---AG-----AAACT----AAGTGT--CT-TATTTGTA--GATTTAAGTAAAGCTTTTGACAC--GGTAAA--T----CA--TCAGG-ATT-----------GAC-TCCCAAACTATGTTTTTG-GA-ATAT-GTGAAAATCA--TA--CAA---TTG----TTTAA-A---TATA-CTGTTAAATAGC----ATCAGCAAT-GTG------TTTGATG--AATGGATG-TTCAGTCAGAT-AA-ATACGA--------------TAGGATGACAATAGGAGT-------ACCATAAAGGCGTCAA-A--TA-GGTCCT-----TGT---TTT-TTATATCTCTA-TG--TA--AATGAC-TACCC--GCTGCTT--ACA-CACT--CTAC-AGTCCATATG-TATGC---AT-----G--AA-CACCGCAAGTTGTTT---CGGA-T-AAAAGTT--G-A--TTGTA-TAAAAGCAATTACATAGTGGA------TTTA--AAATACT-TCTG---GAAT-GAT--G-AG-ATAAAA---CAAACTTAC--A-----AAATCTTAACAAAAACGTGCAGTGATAA--TATG--TACAGAATAAAGTTA-AGAAATT-GCAGAAAGTATT-G--ATG-----AAGTG-GATGATAT-------C-ACAATTT-----GAAAA-TGTATCTTTGTGC--AAATTA-CTTGGTG-TT-TATATTGA-----CTAGA-TG-CTCACT--TGGTC--TGA--AC--ATGCTTG---A-AA--TTTTAAAA-AAA-AAAAACTGCA-AGCAAAA--TAGGCGTTTTAATGTT-----GATTACG-----TTC--AATGTACAC---CGA--CTTTTTAC--T-GAAATTTTT-T-ATACAA-Tttata
gi|5 : caTGTA-TGACACCA-GAGTAT--------TTGAATGTTTTTAGATTTG--TGA-ATGA-GATATCCACA---AGAAATACAAGACAAAG--T-GTTAGTA--TTTTATTTACGTT-ACAAAAGCC-AAAACAGAATATT-T-CAAAA-AATCTTTTTATCATTTCAGCAGCAATGTTATGGAATTCATTGCCAGATTT-TAATAGAGAATGT-GCAACTGTA-ACTTCTTTTA-GATCAG-CCTATCTT-AAACATTATTTTGATACTCAATAGTCAATA-A-TACTCAAG-TGTTTATGATCTCTATTGAGGTGCATTTA--GTTCT-TAT--CT--GTATATAGAATA---------TC-TGTAATAA-TTTCAT----------GTTG-TAT--------GA--TGTATG-TTT---------TA-TA------TAT----GTATAAT---TATATGT-T---------------AAT----A-AACTAGT---T-CG-TA--AAACT-AATTG-TGCAATCCTGT-ATAAATAAAGG--TTATT-GTTATTAT
gi|6 : catAATTCATTGCCAGATTT-TATTAGGGATTGC-AGAACTTTG-ACTTCTTTTA-GATCAG-CCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG---------------------------CGA--GTTCT-TAT--CT--GTATATAGAATA---------TC-TGTGATGA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------TA-TATATATGTAT----AT---AT---TGTATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|7 : GAATGT-AGAACTTTG-ACTTCTTTTA-GATCGGCC-TACCTT-GAACATCATTTTGACAC-------TCAATA-A-TACTCAAATT------------------------TCTATGGTTAC-TAT-------TAAAAAGAGTATAGTTGTTATC-TGTGATAATTTTCAT----------GCTG-TGT--------GA--TGTATG-TTT---------TA-CA------TGT----AT---ATATGTATATGTGTTAAAGACAGGACCACTATGT--G-AACT--T---TATTGTAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAAG--TTATT-AT
gi|8 : CAAA-T------------------------TTTA--ATTTG-CAT--AT--GGA-ACGGAATAT--------TCCTATAATGA-TTTCATATCTTAACTGGTTCCTGTAATCTTCAGGATTATATA-ATTGGCAAAGTTTAATA------TAT----GT---ATAA-TATATGT-T-AAAGACAGGACCACGATGT-AA-AACTAGT---T-TG-TAT-AAA-TAAgt
gi|9 : acaatacatggagaTTCTGTATTACC--GAATACAGAATAT---------C-TGTGATAA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT------------TA------TAT----GT---A----TATATAT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGG-TTAAATAAAGG--TCATT-ATTATTAT
blockSeqs : . A A G G TCAA . G C A G ATCAT T T TT G A C GCTGT A TGAA G C C G G T C C T GCATA G C A GTT . T T GTGGGGA TGGGCAGCGTTTGTT TT A TA G G CC TAAAACAATTATTACTCTGCCA TA TG ATGTTTTTGGA C T CTAAAGTTTTCACC ATATACTGT C A TG AG A ACCGCC T GG C AG A G GGGAAAGTGTATACTG TCCTCAAA A ATTG CGTAATTT A A A GGTAATG A . TA TT G A TC . T ACTATCGACTCATC A AT T A T TTT AT T AAT T TAC GT CG AAATACT T TG G TCGCA AAA C CGCAC T A GT A ACAAAT TACAGAA AG . CA A TCGA TAG GT T GGT T A C C . T T TA TTA A . T AATGTC C TC ATC AA TC TT GGAAATGT TA GT GG TAGTC AG A G AG AGTAT ATAA CTTT AACAAGC A CTCC TTTTTTA T TCACATTAATGCATGTCTT T ATGTA G T TGG T T C A G A TACCA AA CA GC T A G AAT AA TG A CTTACAAAGA G T GA ATGA G T A G CA T C G . T C AGAC CGA T C G . GTAA AA TTTGTAAAATTG T ATAGT A GG GAT TCTT AA T T T A A C GT G T A A C . A A . T C T . TCAATAGT T C AGTGTTTATGATCTCTATTGAGGTGCA AT TG TACC A T TAGTTGTTA C T ATCTTAACTG T AATCTTCA AT . GGCAAAGTTTAATA ACTC ATA ATGT G T TA . A ATA A G TA A TT C AT A
blockSeqs : G . G . . . C G CCC . T AT C G . . . T . . . . . G . . . . . . . AC . C C AGGGT AAGTGTCT T A CT . A A GATCAGATATTTTGTGCAC G GG TTGCGG . T TGGGCCCTCTA GCTTATCC A . T G . . A G . . . . TAGGA CC A TAT TTTGCT . . . TAA A . . T . A . . T GTATGCAT A A A T T . T T CAT . TAC . C TAAT T T G GCAG . T AACT T A . T ATAA GAT . . CT A TG TA TT A GTA G A C . . . T . TA . . T C . T G . T . GGTTGAT . G C GCAAG AA A T TG . AGT CTG AGAAGC A TT TATAA G CCACAATG C TAG . . . . . . A T . ATAT . TT . . . . . C T . . A C . TT . . A G TA . T . . T . TA . T T . GTA A TTTGAATG A ATTTG . GA . T T . . . . . C T . . . A C . T . . . C C . T . . AATT TG T TGA T T T . . . C . . . TATATATATG . . AAT . T A . A . . . T A T . . .
blockSeqs : . . . AG CTCCGC . . . . C . TCATCAGGATT C AA CCTGT . G TCATACAATTG CATGTG . . . . . . T . . . . . TG A . ATA TGT . . . . . . . . . A . . . . . . C . T . T . A . . . . ATG . . . GAG . . ACA T . . G . T . . G . G . G . . . . . . . . . . T . . . . . C T . . . CTTGAAA . A A GATG . . C G . CG CA CGACTT . T TTT . . . T . . . A . GT . . . C AA . T . . . . GA . . . . . . . . . . . C . T . . AAT . T CT T T T . . . T . . . AATAA . . T . T A . A . . . T A T . . .
blockSeqs : . . . . . . . . . . . AG . C CT T A T . . . . . . . TATA . . T . T A . A . . . T A T . . .
blockSeqs : . . G AT G T . . . . . . . . TATA . . T . T . . A . . . T A T . . .
blockSeqs : . . A . . . . . TATA . . . . . . . A . . . T A T . . .
blockSeqs : . TACA . . . . . . . A . . . T . T . . .
blockSeqs : TA . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . T . . .
blockSeqs : . . . . . . . . T . . .
blockSeqs : .
blockSeqCons : AGT************************* TATA**************** ** T*
originalCons : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACANTGACAA--TATG--T------TAA--TTA-GGAACTTCNCAGAAAGTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT-AA-AACTAGT---T-TT-TAT-AAACTAAATTGTTGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
finalCons : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACANTGACAA--TATG--T------TAA--TTA-GGAACTTCNCAGAAAGTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAGT-------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATTTATA----------------TAT----GT---AT---TATATGT-TTAAAGACAGGACCACAATGT--A-AACTAGT---T-TT-TAT-AAACTAAATTGT-GCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
Alignments
lowQualScore : 1 1 1 3333 1 22 222222 1 111 1 1 22222 1 3333 1 2 1 333333 1 1 111 1 1 3333333333 333333333333333 11 11 1 22 5555555555555555555555555555555 11 2222222222222 1 6666666666666666666666 33333333333333 1 11 11 1 222222 11 1 11 1 1 6666666666666666666 33333333 2222222 22222222222 1 1 1 2222222 1 22 11 1 11 1 55555555555555555 11 111 111 2222 1 11 11 3333333333 11 1111111 111 2222222 11 444444 333333333 11 1 1111 111 11 1 1 1 22 111 1 1 333333 1 111 11 11 11 4444444444444 11 11 11 111111 22222 33333 1111 22222222222 1111 222222222 2 6666666666666666666666666666 222222 1 222 1 111 1 111111 3333 11 22 111 22 111 1 4444444444 11 111111 1 1 1 1 2222 111 1 1111 11 8888888888888888 3333333 1 111 222 3333 111 1 111 1 1 1 1 22222222 8888888888888888888888888888 11 222222 2222222222 2222222222 1 22222222 111111111 333333333333333333 1
lowQualScore : 5 1 5 6 3 1111 3 6 00 1 6 333333 3 7 333 1 2 2 77777 3 0000 6 6 6 2 6 1 6 3 7 555555 6 3 3 333 0 0 7 3333333333 444444444444444 66 3 00 0 1 33 8888888888888888888888888888888 00 0 11 8888888888888 0 1 6666666666666666666666 33333333333333 8 0 33 66 0 888888 1 22 0 33 0 0 0 1111111111111111111 55555555 0 3 9999999 77777777777 0 0 0 8888888 3 0 0 33 99 0 3 33 0 3 55555555555555555 3 33 1 9 3 777 111 3 4444 0 0 999 0 33 11 0000000000 3 33 2 4444444 777 7 3333333 0 3 3 33 1 111111 333333333 33 0 33 3 0 6666 000 44 9 999 2 33 2 0 0 0 3 55 000 0 0 3 111111 0 55 444 33 22 33 5555555555555 33 00 00 0 333333 44 3 4 22 55555 11111 6666 00000000000 3 5555 444444444 0 6666666666666666666666666666 1 888888 6 3 555 3 7 6 999 1 3 888888 9999 55 55 7 7 6 777 33 111 0 3333333333 6 1 33 0 333333 0 8 8 3 8 33 0 7 0 0 3 0 2222 777 3 6 6 5 2222 44 0000000000000000 3 8888888 2 666 333 3333 333 7 7 7 7 3 6 777 6 2 3 0 3 2 0 9 0 8 8 0 8 3 8 0 66666666 8 8 7777777777777777777777777777 88 99 000000 1 1 5555555555 5 6 9999999999 2 44444444 77 5 777777777 4 4 5 222222222222222222 4 1 99999 666 3 3 55 1 7 3 55 3
lowQualScore : . . . . . .... . . .. . . ...... . . ... . . . ..... . .... . . . . . . . . . ...... . . . ... . . . .......... ............... .. . .. . . .. ............................... .. . .. ............. . . ...................... .............. . . .. .. . ...... . .. . .. . . . ................... ........ . . ....... ........... . . . ....... . . . .. .. . . .. . . ................. . .. . . . ... ... . .... . . ... . .. .. .......... . .. . ....... ... . ....... . . . .. . ...... ......... .. . .. . . .... ... .. . ... . .. . . . . . .. ... . . . ...... . .. ... .. .. .. ............. .. .. .. . ...... .. . . .. ..... ..... .... ........... . .... ......... . ............................ . ...... . . ... . . . ... . . ...... .... .. .. . . . ... .. ... . .......... . . .. . ...... . . . . . .. . . . . . . .... ... . . . . .... .. ................ . ....... . ... ... .... ... . . . . . . ... . . . . . . . . . . . . . . . . ........ . . ............................ .. .. ...... . . .......... . . .......... . ........ .. . ......... . . . .................. . . ..... ... . . .. . . . .. .
lowQualScore : 5 0 5 7 3 0000 3 7 00 0 7 000000 3 3 777 0 0 0 77777 3 7777 7 7 7 0 7 0 7 3 3 000000 7 3 3 777 0 5 0 5555555555 888888888888888 00 2 00 0 0 88 8888888888888888888888888888888 22 2 55 0000000000000 0 0 8888888888888888888888 55555555555555 8 0 22 55 0 888888 0 55 0 88 0 0 2 2222222222222222222 22222222 2 2 5555555 55555555555 0 0 0 0000000 2 0 8 88 22 0 2 88 0 2 55555555555555555 2 22 0 8 2 555 000 2 8888 0 2 000 8 88 22 8888888888 2 22 5 8888888 555 0 5555555 8 2 2 88 0 888888 555555555 88 0 55 2 2 5555 222 22 8 000 5 22 5 0 0 0 2 55 888 0 0 2 555555 0 88 000 88 00 88 0000000000000 88 22 22 2 888888 00 2 2 88 00000 00000 0000 88888888888 2 0000 555555555 0 7777777777777777777777777777 0 333333 7 3 000 3 3 7 000 0 3 000000 0000 77 33 3 3 7 555 88 000 0 8888888888 5 2 88 2 222222 8 0 0 2 8 55 0 0 0 0 2 0 5555 555 2 5 7 5 0000 77 3333333333333333 7 3333333 0 777 333 0000 777 3 3 3 3 3 7 777 7 0 3 7 2 5 0 8 8 0 0 8 0 2 0 8 88888888 0 0 5555555555555555555555555555 33 33 111111 9 7 9999999999 7 7 2222222222 0 22222222 99 0 888888888 4 4 2 111111111111111111 4 9 55555 444 6 6 77 4 3 6 00 6
consensus : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACANTGACAA--TATG--T------TAA--TTA-GGAACTTCNCAGAAAGTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA-TAT----GT------AT---TATATGT-TTAAAGACAGGACCACAATGT--A--AACTAGT---T-TT-TAT-AAACTAAATTG-TGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
Reference ( family-102 ) : TTTCCATGTCAATAANTATAAGACCTGGTATCTGT-TTTGCCTAT-CAGTAAG-AAAATTTTGGAAAGAC-ATNTGTTTACA--CACCTTTTAC-GATATCTGATTGAANAGCACAAGCT--TTAA-CAGT---AACATCAGTCGTGTTCCAGACCAAAGCAT-CATGCGANACTGCT-TTACATAATAT-CAT-GATGAAA-AT-GGC-TCGAAAA-ATCGATAAAG---GT-----AAACTTTN-CAGCGT--GT-AATTTTTATCGATCTAAGCAAAGCATTT-ANAC--GGTCAA--T----CA--T--AT-ATTCTGT----CA-GAC-TTCCAAGCT-----TTTGTGA-ATAT-GTNGAAAT-A--CC--CAAAGTTTN----TCTAA-A---TGTA-CC--TACAT-GCT-AGATC-GCAAT-GTG------TCNAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAGA--------------TG---TTACAATCGGAGTTC-----ACCCTCAAGGCTCTAT-A--T--GGTCCT-----TTT---TTT-TTAT-TCTTTT-TG--TA--GATGAC-TATCC--AATGCTTT-AAA-CAAT--CTAC-AGTCAATATA-TATGC--GAC-----GATAA-CCNCGCAAGATGTTT---CTGA-T-AAGTCTTTGG-A--GTGAA-GAGAAAGAATTACATA--GGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--G-CA-AAAAAA---CAAACTT-C--AC-TATAAATTTTGAAGAAAAC--ACANTGACAA--TATG--T------TAA--TTA-GGAACTTCNCAGAAAGTATT-GAAATGTA-AAAACTNTGTTGAAATGTAAGGGG-AAAATTTCTT-AGAAAA-TGTA-AATTGTGCT-AAACTT-CTGGGTG-TT-TATATTGA-----CTGAA-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATG-CAA-GAACACT-TA-NNCAAAAACTAGGCGTTTTAAGGTA-----GATTG-GT--AATTC-TGATGTCCAA---AGA--C--ACTAC--TCGAAA----T-T-ATACAA-TACCATAGTAT---------CCACATT-ATG-A------AATNAT---TAGTTGTA-CGGTAT--GGCATG-ATGCC--GGNAAC-AAACAA-A-TA-CACTGTATC-A--TACGGCTT-CTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATT-T-TAGACAT-C----------AGAGTACC--TCAGTCAG--T--GTCAACTT-T-AACATGTTATCAAG-CTTGAGATGGATGCCCATGTCA-GACTATTTC-ATATA-TCGNG--AAAT---TATTTCTTATCTTCAAAGTTTTACATTGGTGTAATGACACCAAGAGTAT--------TTG----TTTTTCGAT--G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG--TTGTTAGTAAATTTTATTTACGTTTACAAAAGCC-AAAACCGAATATT-T-CAAAAGAATCCTTTT-TCATTTCGGCAGCAATTTTATGGAATTCATTGCCAGATTT-TATTAGGGAATGT-AGAACTTTG-ACTTCTTTTA-GATCAGCCCTACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG-T------------------------TCTA--GTTCT-TAT--CT--GTATATAGAATAT--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATG-ATT---------TA-TA-TAT----GT------AT---TATATGT-TTAAAGACAGGACCACAATGT--A--AACTAGT---T-TT-TAT-AAACTAAATTG-TGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|1 : TTTCCATGTCAATAATTATA-GACCTG-TATCTGT-TTTGCCTAT-CA-TAAGCAAAATTTTGGAAAGACGATGT-TTTACA--CACTTTTTAC-GA-ATTTGAGTGAAAA-CATAAACT--TTAA-CAG----AACATCAGTCGGGTTTCAGACCAAAACATTCATGTGAAACTGCT-TTACATAATAT-CATTGATGAAA-AT-GGC-TTGAAAACATTGATAAAG---GT-----AAACTTTA-CAGGGT--GT-AATTTTTATCGATTTAAGCAAAGCATTT-ATAC--AGTCAA--T----CA--TG-AT-GTTCTGTTGCACA-GAC-TTCTAATCT-----TTTGTGATATAT-GTGAAAAT-A--CTTTCAAAGTTTCAC--TCTAA-AAAATGTA-TC--TACAT-GCT-AGATC-ACAAT-GTG------TCAAATGG-AAAGGGTC-ATC--TCGGAA-GA-AGAAAA--------------TG---TTACAATCGGAGTTC-----GCCTTCAAGGCTCTAT-ACTT--GGTCCT-----TTG---TTT-TTAT-TCTTTT-TG--TA--GATGACTTATCTA-AATGTTTG-AAG-C-AT--TTACTAGTCAATATA-TATGCAGGAT-----GATAA-CCACGCAAGATG-TT---CTGA-TGAAGTCTTTGG-A--GTGAA-GAGAAAAAATTA-ACA--AGACGATCTTTTA--A-----T-TCTAT-TGAATGGAT--GCCA-AAAAAA---TAAACTT-C--AC-TATAAA-TTTGAAGAAAAC--ACATTG------TATG--T------TAA--TTAGGGAACTTCTCAGAAATTATT-GAAATGTA-AAAACTTTGTTGTAATGTAAGGGGAAAAATTTCTT-AGAAAACTGTA-AATTGTGCT-AAACTT-CTGGGTG-TTATATATTGA-----TTGAC-TGTCTTGCG--TGGTC--TCATCAC--ACG---G---A-TG--TTT--ATC-CAA-GAATACT-TA-GTCAAAAACTAGGTGTTTTAAGGTA-----GATTG-GT--AATT--TGATGTCCAA---AGA--C--ACTAC--TCAAAA----T-T-GTACAA-TACCATAGTATCCCCCCCTCCCACATT-ATA-A------ACTGAT---T-GTTGTA-CGGTAT--GGCATG-ATGCCCAGGAAAC-AAACAA-A-TA-CACTGTATC-ACGTA-GGCTT-TTTAAATTACAAAACAAGAGCAGCAAGGA---TC--ATTGT-TAGACAT-C----------AGAGTACC--TCAGTCAGTTT--GTCAACTT-T-AATAT-TTATC-AG-CTTGAGATGGATGCCCATG-CA-GACTATTTCAATATA-TCG-G--AAAT---TATTTCTTATCTTCAAAGTTTTACATTAGT---ATGACACC-AGAGTA----------------TTTTTCG----G--TGAGATGA-G-TATCCACA---AGAAATACAAGACAAAG---TGTTAGTAAATTTTATTTATGTTTACAAAAGCC-AGAA-CGAATATT-TCCAAAAGAGTTCTTTT-TCATTTCAGCAGCAATTTTATGGAATTCATTGCCAGATTTATATTAGGGAATGT-AGAGCTTTGAACTTCTTTTA-GATCAGCCCTACCTTAAAACATTATTTTGATAC-------TCGATA-A-TACTCAG----------------------------CTA--GTTCT-TAT--CT--GTATATAGAATAC--------TC-TGTGATAA-TTTCAT----------GTTGCTGT--------GG--TGTATGCATT---------T--TA-TAT-----T------AT---CATATGT-TTAAAGACAGGACCACAATGT--GATAACTA-T---T-TT-TAT-AAACTAAATCGTTGCAATCCTGT-TTAAATAAAGG--TCAT---TTATTAT
gi|10 : AGAA---TCC-ATT-T-TAGACAT-C----------AGAGTACC--TCATTCAT--T--GTCAACTT-TTAATATGTTATCAAG-CTTGAGATGGATGCCCATGCCA-GACTATCTC-ATATA-TCGTA--AAAT---TA-TTCTTATCTTCAAAGTTTTa
gi|11 : ATG-ATT---------TA-TA-TGTACTCGC------AT----AGATGT-TTAAAGATAAGACCACAA----------CTAGT---T-TT-TAT-AAACTAA-TTG-TGCAATCCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|12 : atgtgcagatata--TGCAAG-GTT---------AA-TAATAT----GT------AT----ATATGT-TTAAAGACAGGACCACAATGT--A--AACTAGT---T-TT-TAT-AAAC-AAATTG-TGCAAACCTGT-TTAAATAAAGG--TCATT-ATTAATATt
gi|13 : aaT---------TA-TA-T-T----GT------AT----ATATGT-T--AAGACAGGAC--CAATGTTAA--AACTAGT---T-TT-TATAAAACT-AATTGTTGCAATACTGTCTTAAAAAAAGT--TCATTAATTATTATt
gi|14 : --T--GTCAACTTGT-AACATGTTATTAAA-CTTAAGATGGATGTCCATGTCA-GACTATTTT-ATCTA-TTGGA--AAAT---TATTATGTACTTTCA
gi|15 : ACAGAACCACATTGT--A--AACTAGTATAT-TT-T-----ACTAAA-TA-TGCCACCCTGT-CTAAATAAAGA----AT---TTATTAT
gi|16 : ACAGGACCAAAAGGT--A--AACTAGT---T-TG-TA--AAACTAA-TTG-TGCAATCCTGT-TTAAATAAAGG--TTATT-ATT
gi|17 : ACTAAAT-G-TGCCATCCTGT-CTAAGTAAAGAATTTATT-ATTA
gi|2 : tattttTTTCCATATCA-TAAATATAAGACCTGGTATCTGTGTTTACCTATTCAATAAA-GAAGTTTGTGAAAGA---TATGTTTATA--C-CCTTTTAC-GGTGTCTG-TTGAAGAACA-AAGCTGTTTAAACAAT---AGCATCAGTCGT--TCCAGACCAAA--ATGCATGCGATACTG-T-TGACATAATATGCAT-AAT--AA-ATAGGCGTTGAGAC-AT-GCTAAAG---GTGGGGAAAGCTTGGGCAGCGTTTGTTAATTTTTATTGATCTAAGCAA-GTATTT-GGACCCAGTCAAGAT----CA--G--AT-ATTTTGTG---CACAAG-TTTCATGCT-----TT-GCGG-ATAT-GTTGAAAT-GGGCC--C----TCTA----TCTGACA---TGTG------A-AT-GCTGAGAGT-GCAAT-GTGACCGCCTCTAATGGGAAAGGGAC-AGC--TCGGAAAGAGAGAAGAGGGAAAGTGTATACTG---TTACAATCTGAGTTCCTCAAACCCTCAAGCGTCTATTA--T--GGTCCTCGTAATTT---TTT-TTGT-TCTTTTATGGGTAATGATGAC-TATCCTAAATGTTTTTAAA-CAAT--CTAC-AGTCAA--------------------GATA---CTTGCAAG-TGTTT---CTGAAT-AAGTCTTTGG-AATGTGAA-GAGGAAGAAG-----A--GGAC-ATCTATAA--A-----TGTATATGTTAATGGAT--G-CAGAAAAAA---CAAAC-T-A--ACTTATAAATTTTGAAGAAAAC--AAAATG------TATG--T------TTA--ATA-GGAGCATCACAGAAAGTAT---GAATTTAGAAAACTGTG-TGAAATGGTAGGTG--AATTTTCTT-AGAAAA-TGTA-AATTGTGC----AC-T-CGGGATGATT-TATA-TGA-------GAA-TGTCTTACATCTCGTCAATCAT-AC--ACG---G---GTTGATTTT--ATGTCAA-CAACATT-GA-TGC--AAACTAGTGGTATTAAAGTAAGTATAATTG-ATAAAATTC-TGAGGTCCAAAACAAG--C--ACT-C--TTGAAA----TATAATACAATTACCATAGTAT---------CCACA---ATG--------AATTAT---TAGTT-TA-CGGTAT---GCATG-A-GCC--AAGAAC-AAACAATACCA-CATGGTATCAA--TACAGATTGCTTAAA-TACAAAAC-AGAGCAGGAAGGA---TCAAATT-T-TAGACACACCTTACAAAGAAAAGCACC--TCGATCAA--TGAGTACAC-T-T-AAC-TCTTATAAAATCTTGAGATGGATGCCCATTTCAGGACTATTTT-A-ATACTCGAGACAGATCGATATTT-TTGTCTTCAAG--TTTACA-TGGTGTAATGACACTAAGAGTATTTGTAAAATTG----TTTTTTGAT--AGTTGTAATGAGG-TATCCACAGATAGGAATATAAAACAAAGTCTTGTTTGTAAA-TTTA-TTACG-TTAC-AAAGCCAAAAACCGAGCATTGT-CAACAGAATC----T-TCATTAAGGCAGCAATTTTTTGGAATTC-TTG-CAGATTT-TA-TAGAGAA-GTAAAAAATTTG-AC--CTTCTATAATCAGCCTAACTTC-CAACATAA--TTGGTAC--------CAATATACTACTCG----------------------------TCTAATGTTC--TAT---TGAGAATATAAAGTAT--------TT-TGTGA
gi|3 : aAAAA-ATTAA-AAAGAGGGT-----AAATTCTC-C-------GC-AATGTTTAT-GGTCTAATTAAAG--TTA-AAACA-GGTCGA--TAAAACAATT--ATTACTCTGC----CA-GATATTACAGGCT-----CCTGT----CATCGTTGAAA------C--TAAAGTTTTCACCTCTAG-G---CTTATCC--TACAT-GCT-AGATC--TAACAGTG------TCAAATGG-AAAGGGTCCATC--TCAGAA-GA-GAAAGA--------------TG---TTACAATCGGAGTCC-------CCTC--GGCTCTAT-A--TTGGGTCCT-----TTTGCTTTTATTAT-TCTTTT-TG---------G------TC--AATGCTTT-GAAGCAATTCCTAC-AGTCAATATACTAT-C--GACTCATCGATAATCCACGCAAGATGTTTTTTCTGA-T-AAGTCTTTGGCAT-GTGATTGAGAAAGAATTACATA--GTACGATCTTTTATAA-----T-TC-AT-TGAATGGATTCG-CA-AAAAAAAAATAAACCT-CGCAC-TACAAATTTTGAAGAAA-C--ACATTCACAAATTATGGAT------TAA--TTA-GGGACTTCTC-TAAAATATTCGAAATGTA-AAAACTTTGTGAAAATGTAAGGGG-AAAATTTCTTCAGAGAA-TGTA-AATTG-GCTAAAACTTACTGGGTG-TT-TATATTGAAATGTCTGAACTGT-TTGCG--TGGTC--TCATCACTTACG---GGAAA-TGT-TTT--ATG-CAAGGAACACT-TAGTCCAGAAACTAGGTGTTTTAAG--A-----GATTGAGT--AATTCTTTATGTCAAA---AGAAGC--ACTACCTCCAAAA----T-T-TAACAAGTACCATAGTAT---------TCACATTAATGCATGTCTTAATCATATGTA-TTGTATCGGTATTGGGCATGTATG-C--AGTAACAAAACAA-A-TATCACTAGATC----TATTGCTT--TTAAATTACATAACAAGA-CAGCAAGGAAATTC--ATT-TGTAGACAT-C----------A-ATAACCGATCAGTCAG--T--GTCAACTC-T-
gi|4 : GTGTCTGT-TGTGCCTAT---GTCAG-AAAATATTG--AAGAC-ATCTGTTCACAATCAT-TTTTACTGATATCTCAT---ACAGCACAA-----CTAA-TAGTGAAAAAAACAGTCATGTTC-AGGC---AGCAT-CAAGCGAGACAGCTCTTTCA--GTAT------ATGAAACAT-GGT-ACGAAAA-ATCGACAATG---AG-----AAACT----AAGTGT--CT-TATTTGTA--GATTTAAGTAAAGCTTTTGACAC--GGTAAA--T----CA--TCAGG-ATT-----------GAC-TCCCAAACTATGTTTTTG-GA-ATAT-GTGAAAATCA--TA--CAA---TTG----TTTAA-A---TATA-CTGTTAAATAGC----ATCAGCAAT-GTG------TTTGATG--AATGGATG-TTCAGTCAGAT-AA-ATACGA--------------TAGGATGACAATAGGAGT-------ACCATAAAGGCGTCAA-A--TA-GGTCCT-----TGT---TTT-TTATATCTCTA-TG--TA--AATGAC-TACCC--GCTGCTT--ACA-CACT--CTAC-AGTCCATATG-TATGC---AT-----G--AA-CACCGCAAGTTGTTT---CGGA-T-AAAAGTT--G-A--TTGTA-TAAAAGCAATTACATAGTGGA------TTTA--AAATACT-TCTG---GAAT-GAT--G-AG-ATAAAA---CAAACTTAC--A-----AAATCTTAACAAAAACGTGCAGTGATAA--TATG--TACAGAATAAAGTTA-AGAAATT-GCAGAAAGTATT-G--ATG-----AAGTG-GATGATAT-------C-ACAATTT-----GAAAA-TGTATCTTTGTGC--AAATTA-CTTGGTG-TT-TATATTGA-----CTAGA-TG-CTCACT--TGGTC--TGA--AC--ATGCTTG---A-AA--TTTTAAAA-AAA-AAAAACTGCA-AGCAAAA--TAGGCGTTTTAATGTT-----GATTACG-----TTC--AATGTACAC---CGA--CTTTTTAC--T-GAAATTTTT-T-ATACAA-Tttata
gi|5 : caTGTA-TGACACCA-GAGTAT--------TTGAATGTTTTTAGATTTG--TGA-ATGA-GATATCCACA---AGAAATACAAGACAAAG--T-GTTAGTA--TTTTATTTACGTT-ACAAAAGCC-AAAACAGAATATT-T-CAAAA-AATCTTTTTATCATTTCAGCAGCAATGTTATGGAATTCATTGCCAGATTT-TAATAGAGAATGT-GCAACTGTA-ACTTCTTTTA-GATCAG-CCTATCTT-AAACATTATTTTGATACTCAATAGTCAATA-A-TACTCAAG-TGTTTATGATCTCTATTGAGGTGCATTTA--GTTCT-TAT--CT--GTATATAGAATA---------TC-TGTAATAA-TTTCAT----------GTTG-TAT--------GA--TGTATG-TTT---------TA-TA-TAT----GTATA---AT---TATATG--TTAA----------------T--A--AACTAGT---T-CG-TA--AAACT-AATTG-TGCAATCCTGT-ATAAATAAAGG--TTATT-GTTATTAT
gi|6 : catAATTCATTGCCAGATTT-TATTAGGGATTGC-AGAACTTTG-ACTTCTTTTA-GATCAGCC-TACCTT-AAACATTATTTTGATAC-------TCGATA-A-TACTCAAG---------------------------CGA--GTTCT-TAT--CT--GTATATAGAATAT---------C-TGTGATGA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------TA-TA-TAT----ATGTATATAT---TGTATGT-TTAAAGACAGGACCACAATGT--A--AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAGG--TCATT-ATTATTAT
gi|7 : GAATGT-AGAACTTTG-ACTTCTTTTA-GATCGGCC-TACCTT-GAACATCATTTTGACAC-------TCAATA-A-TACTCAAATT------------------------TCTATGGTTAC-TAT-------TAAAAAGAGTATAGTTGTTATC-TGTGATAATTTTCAT----------GCTG-TGT--------GA--TGTATG-TTT---------TA-CA-TGT----AT------ATATGTATATGTGTTAAAGACAGGACCACTATGT--G--AACT--T---TATTGTAT-AAACT-AATTG-TGCAATTCTGT-TTAAATAAAAG--TTATT-AT
gi|8 : CAAA-T------------------------TTTA--ATTTG-CAT--AT--GGA-ACGGAATAT--------TCCTATAATGA-TTTCATATCTTAACTGGTTCCTGTAATCTTCAGGATTATATA-ATTGGCAAAGTTTAATA-TAT----GT------ATAA-TATATGT-T-AAAGACAGGACCACGATGTA-A--AACTAGT---T-TG-TAT-AAA-TAAgt
gi|9 : acaatacatggagaTTCTGTATTACC--GAATACAGAATAT---------C-TGTGATAA-TTTCAT----------GTTGTTGT--------GG--TGTATG-ATT---------TA-TA-T------GT------AT----ATATAT-TTAAAGACAGGACCACAATGT--A--AACTAGT---T-TT-TAT-AAACT-AATTG-TGCAATTCTGG-TTAAATAAAGG--TCATT-ATTATTAT