lowQualScore : 111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 1 11 222222222222222222222222222222222222222222 11 0000000000000000000000000000000000000000000000000000000000000000000000000000000 11111111 55555555555555555555555555555555555555555555555 11111 11 22222222222222222 1111 333333333333333333 11 1111 1 222 11 44444 222222222 33333 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111 555555555555555555555555555555555555 11111 11 111 1111111111 1 22222222222222222 333333
lowQualScore : 5 6 3 99 4 5 222222222222222222222222222222222222222222 88 3 5 7 77 3 3 44 3 777 33 555 8 3333333333333333333333333333333333333333333333333333333333333333333333333333333 2 11111111 2 55 2 2 2 0 5555 22222222222222222222222222222222222222222222222 2 2 99999 444 4 77 2 3 2 77 5555 4 2 2 66666 88888888888888888 5555 2 33 444 444 33 888888888888888888 33 3 444 2 33 2 4 22 333 4444 22 0 333 44444 1 5 1 1 44 1 1 1 1 1 3333 333 666666 2 2 333 1 4 1 1 3 1 1 1 1 777 22 1 1 66666 1 9999999999 44 0 77 5 2 111 5 999 4 44 0 88888 3 66 666666666 1 00000 5 4 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 111 777 0 777777777777777777777777777777777777 4 77777777 2 4 1 333 1 55555 44 333 33333 1 1 1 1 1 1 44 1 1 4 1 44444 333 33 4444 333 22 777 2 33 22 0 3 444 2 33 7777 33 2 2 2 4 333 55 333 33 4 2 0000000000 2 66 33 2 2 2 7777777 77 2 55 2 444 888 4 7777777 2 666 33 999999 4 0 55555555555555555 1 444444 0
lowQualScore : . . . .. . . .......................................... .. . . . .. . . .. . ... .. ... . ............................................................................... . ........ . .. . . . . .... ............................................... . . ..... ... . .. . . . .. .... . . . ..... ................. .... . .. ... ... .. .................. .. . ... . .. . . .. ... .... .. . ... ..... . . . . .. . . . . . .... ... ...... . . ... . . . . . . . . . ... .. . . ..... . .......... .. . .. . . ... . ... . .. . ..... . .. ......... . ..... . . ................................................................................................ ... ... . .................................... . ........ . . . ... . ..... .. ... ..... . . . . . . .. . . . . ..... ... .. .... ... .. ... . .. .. . . ... . .. .... .. . . . . ... .. ... .. . . .......... . .. .. . . . ....... .. . .. . ... ... . ....... . ... .. ...... . . ................. . ...... .
lowQualScore : 0 0 9 44 1 0 111111111111111111111111111111111111111111 66 6 5 6 00 2 3 33 3 999 99 000 2 2222222222222222222222222222222222222222222222222222222222222222222222222222222 3 66666666 5 22 5 5 5 1 3333 55555555555555555555555555555555555555555555555 9 7 99999 777 3 22 4 0 4 99 0000 7 4 4 55555 44444444444444444 9999 5 44 444 444 22 666666666666666666 44 9 444 4 11 1 2 88 777 5555 99 9 333 88888 9 3 9 9 55 9 9 9 9 8 5555 222 777777 1 0 333 9 0 9 8 8 8 9 9 9 888 11 5 6 66666 7 0000000000 99 2 33 0 9 444 7 333 8 55 3 99999 5 88 000000000 2 88888 0 0 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 666 000 3 888888888888888888888888888888888888 2 22222222 0 0 9 333 9 11111 88 000 66666 7 8 8 8 8 8 33 8 8 6 8 55555 222 11 2222 555 66 666 1 11 99 3 9 111 4 22 6666 11 2 2 2 4 999 88 999 11 4 2 4444444444 5 55 22 4 4 4 9999999 99 4 99 2 111 111 4 4444444 4 555 22 111111 2 2 55555555555555555 8 000000 7
consensus : NTGAATCGAGG-CAGGCT-ACTTACAAA-------------CAA----------GTTG-TG-T-C-G-G-G--TTTCAA-CAGTCACGTTTAAA-GNCAG-CATTTC-G-CAA---A--T---TCTATGGT----------C--------GTT----ATA-C-AT-TA--------G----TTTGCCAG---TATG---ACC--------TGC--------CATTGGGTC-AAATG-CTG-TCTG-A-CGTG----TTT------CA----TA-------------CC---AATTGTTAGG-CGT-CTTTAT-ACACN----GA---TTTTGACTACGG-A-TTACTC-C--GT----T-TAC-C-TGAT--C--AA-GACA-------AT---GGG-C--T-CA--CGG---CGG---GT--GTGA---C----CG-GT-C---AAC--AGGGGATGCT---TACTCC-TCC--TAGGC-ACC-TGA--TCCCACCTC---T----GGTG-TGTC---C-----AGG-GGTCCG-TG-T--TTGC-CCA-A-CT-CT-T-GT-TTTTGTA---TTCT--AT-TT-AGG-ACTT---AC-GAGA-TT-GA-T-CACTG-TT-CG-T-T---A--T-CT-TTG---T-TT-T----------GTATTCTG-TTTG-GGACTTACGAGATT-GATCAC-TG-TTCGTTAT-CTTTGCC-TTTTCATC-A--TACATNTTTNTAT-T-TT---AAATGT--CATTATGTNCGAAGA---------TAAAG-TCATGTACGTC-TA-CA---TGCACATGTAATTCAATTGTGCCAATCTTTAAAAGTCAGTTCTAAAATATGC-AAA-TACATTTAT---GTAAAGGCAAC-A----------T-A-------C----A-------GTG-A--------TC-AA-TCTC-GT---AAGT-CCT-AA-AT--AGAA---TACAAAA-AC-A-AG-AG-T-T-GG-GCAA--A-CA-CGGACC-CCT-----G---GACA-CACC----A---GAGGTGGGA--TC-A-GGT-GCCTA--GGA-GGAGTA---AGCATCCC-CT--GTC---GA--C-CG-G-T-C---AC--ACCCG---CC--GTGA-G-CCC-ATA----G-TCT-T--G--A-TCA-G-GTA-A----AC--G-GAGTAA-T-C-CGTAGT-C-A-AA----T--C-A---G--TGT-AT--AAAGAACGGCCT--ACAATG--AA--AT-GCTAT-TAAACATGTCAG
Reference ( gi|3 ) : ATGCACCAAGG-GAGGTT-ACTTACAAA-------------CAA----------G---------------G--TTTCAA-CAGTCGCGTCTAAC-GTCAG-CATTTT-G-CAA---A--T---TTTATGGT----------C--------G------ATA------TA--------G----TTTGCGGG---AATG---GCC--------TAC--------CATTGGGTC-AAATG-TTG-TCTG-A-CGTG----TTT------TA----TA-------------TC---A--------------CTTCAT-ACACA----GA---TTTTGACTACGT-A-TTACTC-C--GT----T-TAC-C-TGAT--C--AA-TACA-------AT---GGG-A--T-CA--CGG---CGG---GT--GTGA---A----AG-GG-C---AAC--AGGGGATGTT---TACTCC-TCC--TAGGC-ACC-TGA--TCCCACCTC---T----GGTT-TGTC---C-----AGG-GATCCG-TG-T--TTGC-CCA-A-CT-CT-T-GT-TTTTGTA---TTCT--AT-TT-AGG-ACTT---AC-GAGA-TT-GA-T-CACTG-TT-CG-T-T---A--T-CT-TTG---T-TT-T----------GTATTCTG-TTTG-GGACTTACGAGCTT-GATCGA-TG-TTCGTTAT-CCTCGCA-TTTTCATCCATATACATATTTGCAT-T-TT---GAATGT--TATTATGTACAAATAACAAATCTATAAAGGTTAT-TA-ATCATAACACTGTGTAGACATAAT--AATGGT--CAATAT--AAAAG--AATTATAAAAC---CCAAA-TACATTTGT---GTAAAGGCAA--A----------T-A-------C----A-------GTG-A--------TC-AA-TCTC-GT---AAGT-CCT-AA-AT--AGAA---TACAAAA-AC-A-AG-AG-T-T-GG-GCAA--A-CA-CGGATC-CCT-----G---GACA-AACC----A---GAGGTGGGA--TC-C-GGT-GCCTA--GGA-GGAATA---AGCATCCC-CT--GTT---GA--C-CG-G-T-C---AC--ACCCG---CC--GTGA-G-CCC-ATA----G-TCT-T--G--A-TCA-G-GTA-A----AC--G-GAACAA-T-C-CGTAGT-C-A-AA----T--C-A---G--TGT-GT--GAATAACGGCCT--ATAATG--AA--AT-GTTAT-TGCAGATGCCAGTATGCTTGTATAAAAAGTCTATATAATGAAATTATAAATGTGAAAATATGTCATTGATACATGTTT
gi|6 : TGAATCGAGG-CAGCCT-ACTTACAAA-------------CAA----------GTTGTTGTTGCAGAT-G--CTTCAT-AAGTCACGTTTAAG-GGCAG-CAATTC-G-CAA---G--T---TCTATGGT----------C--------GTT----ATAACGATTTA--------G----TTTGCCAG---TATG---GCC--------TGC--------CATTGGGTC-AAATG-CTG-TCTG-A-TGCG----TT
gi|19 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagttttTGAATCGAGG-CAAGCT-ACTTACAGA-------------CAA----------GTTGTTGTTGCAGGG-G--TTTCAA-CAGTCACGTTTAAA-GGCAG-CATTTC-G-TAA---A--T---ACTATGGT----------C--------GTT----ATAACTATTTA--------G----TTTACCAA---TATG---ACC--------TAC--------CATTGAGTC-AAATG-CTG-TCTG-A-TGTG----TTT------CA----TA-------------gtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaactcttggtttttgtattctaattgggacttatgagattgatgactgttcgttgtctttacattgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|4 : atatttatgtagcaatattccatcatcaactgcatatggtgtgtatacatgtctcttaacttattcgatacgcaagagcttgttctgcgtatgatcagatttATCAAGA-CAGGCT-ACTGACGAA-------------CAA----------GTT-------------G--GTGCTA-CAAGGGAGTC-AATAGTCAG-CATTTC-G-CAA---A--T---TCTATGGT----------C--------G------ATA------TAACGATCCAG----TTTGCCAG---TATA---ACA--------TGC--------CAGTGGATC-AAATG-CCG-TTTG-A-CAAGACAGTTT------CA----TA-------------CC---AATTGCTAGGCCGTTCTTTAT-ACACA----GA---TTTTCACTAC-----------------------TAC-C-TGAT--A--AAGTTTA-------A-----GG-A--TTCA--CAG---TGG---AT--GTGA---C----CG-GC-G---GAC--AGGGGATGCT---TACTCC-TGC--TATGT-ATC-TTA--TCTCACCTC---T----GGTA-TATT---C-----AGA-GAGCTA-TG-T--TAGC-CCA-A-CT-CT-A-A---TTTGTA---TTCC--GT-AT-AGA-AATT------GAGA-TC-GA-T-CACTG-TT-CG-T-T---A--T-CT-TCA---T-CT-TTATAGTGCGAGTATTCT-------GGACGTACGgccatttgttggaggtccgtgttgccctacactcgatttt
gi|14 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaaATCGAGG-CAGGCT-ACCGACAAA-------------CAA----------GTTCATGTTACAGGG-G--TTCCAA-CCGTCTCGTTTGAA-GTCGG-CATTTC-A-CAGTCTA--TAGATGCATGGT----------C--------G------TTA------TAAC------G----AT--CTAG---AGTGCCAACC--------TGT--------CGTTGGGTC-AAATG-ATG-TTCG-A-CATG----TAT------CA----TA-------------CT---AATTGTTAGGTCGTTCTTTAT-ACAC-------------TGCCTACAG-A-TTATTC-G--AT----T-T-C-C-TTAT--C--AA----A-------ATTTAAGG-C--T-AA--CTG---CGG---GT--GTAA---C----CG-GT-CTTGAAC--AGGGGAT-TT---TAC-----CC--AAGGT-ACT-TGA--TCCCATCTC---T----GGTA-TATC---C-----AGA-GGTCCG-TG-T--TTGA-CCA-T-CT-AT-T-CC-TTATCTA---TT
gi|5 : agcctgttctatgcacggccagttttttaATCGAGA-CAGGCT-ACTTACAAA-------------CAA----------GCTGATGTTGCAGAG-G--TTTCAA-GAGACACTTTTCAA-ATCAG-CTTTTC-G-TAA---A--T---TCTATGGT----------C--------GTTAT--ATAACGATCTA--------A----TTTGCAAA---TACA---GCC--------TTT--------CATTGGGTC-AAATG-TTG-TCTG-A-CGTG----TTT------CA----TA-------------CC---A--------------ATTtgacccaatagcaggttg
gi|8 : cacatttctttgattgattttatgaaacactgatctctaaacagtcggaattcccatgggcatgaattgtgctactttgttagctgacctgttcttatattcttacaaggcaaattttattcaaaagtttctacatgagaagaaaaaatctttagctgtggtttttaattcgatagttggatatatcgatatcgttttatctattgatagctattattttcatttatatgtcgattcgttatatcccattgaacaacagacaccacagagtcatcgtacttggatattttactgaacgcagacactatcggcaaactaacaactcaaactttatgacaaacgggacgatttcagcttctccactgtcaacttcccatatgtacaaatgtatgtagcaacatcccatcagcacttgtatatggtgtttattcgatatgaaagagcttgttctgtgaataatcagtttttaaCGAGGCAAGACT-ACTTACAAA-------------CAACTTGTCGCAGG---------------GATTTTGAA-AAGTTACGTTTAAA-GGCAT-TATTTC-G-CAA---G--T---TCTATGGT----------C--------G------TTA------TA--------ACGA-TCTACT------ATG---CCCATACAAACTGC--------CAATGAGTC-AAATG-CTG-TCTG-A-CATG----TTT------CA----TA-------------GC---AATTATTAAGCTGTTTTTCAT-ACACT----GAATTTTTTGACTGCAT-A-TTATTC-C--AT----T-TAC-T-TGAT--C--AA-GACA-------AT---GGG-C--T-CA--AGG---CGG---GT--GTGA---C----CT-CT-C---GAC--AGGGTATGCT---TACGCC-TTT--TAGGC-ACC-TGA--TCCCAACTC---T----GGTA-TGCC---C-----AGG-GGTCTG-TG-T--TTGT-CTA-A-CT-CT-T-G--TTTTGTA---TTCT--AT-GA-AGG-ACTT---AC-GAAA-TT-GA-T-CACTG-TT-CA-T-T---A--T-GT-TTGCCCT-TT-C----------ATACTCTG-gttaggccgttatttatacat
gi|10 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagattttgattCGAGG-CAAGTTGACTTACAAA-------------CAA----------GTTGTTTATCACAGGGG--TTTCGA-CAGTCACGTTTAAT-GGCAG-CATTTC-GACAAG--A--T---TCAATG----------------------------ATT------TA--------A----TTTGCCCATACAAT-----TC--------TGTT-------CATCTGGTCCAAACACTTGCTCTG-A-CATG----TTTA-----CA----TA-------------GC---AATTGTTAGGACGTTTTTCATTACACT----GA---TTCTGAGTATGG-ACTTACTC-CC-GT----C-TAC-C-TGAT--C--AA-GACA-------AT---GGG-C--T-CA--CGA---CGG---GT--G-GAC--C----CG-GT-C---AAC--A-GGGATGCT---TACTCCTTCC--GAGG--------------CATCTC---T----GGTG-TGTC---C-----AAC-GGTCCGTTG-TA-TTGC-CCA-A-C--CT-T-GG-TTTAGTA---TTCT--AT-TT-TGGCATTT---AC-GAGA-TTCGATT-TACGT-TT-CG-T-T---A--TATT-TTGCC-T-TT-T----------TCATTTTG-atgccatagaagtacat
gi|20 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttttgattAGGCT-ACTTACAAAAAAGTTATTTTTGCAG----------G---------------GA-TTTCAA-CAGTCGAATTTAAA-GGCAG-CATGTC-G-TAA---A--T---TCTTTGGT----------C--------G------TTG------TA--------ACGATTTTGCataaagacgtttctaattttttgtaaa
gi|26 : actacgatctttatagatgaaatattaacgggacgatttgagcttctccatcgtcaacttcccatatttatgtagcaaatgtagcaatattatattccatcatcacctgcatattatgttgtgtaggtctctcaacttattcgatacgcagagcttgttctgcgtatgatcagttttttaatcgaaac----------G---------------G--TCTCAA-CAGTCTCGTTTGAA-GTCCG-TATTTT-G-CAA---A--T---TCTATGGT----------C--------GTTACTTATAACGATCTA--------G----TTTGCCAA---TATG--------------TACAAATTTGGCGTTGGGTC-AAATG-CTA-TCTA-A-CGTG----TTT------CA----TA-------------CC---AATTGGTAGGTCGTGCTTTAT-ACATT----GA---TTCTGACCATGG-A-TGACTT-C--GT----T-TAC-C-----------------------------AGG-C--T-CA--CGG---CGG---AT--GTGATCTA----TT-GA-C-----T--AGGGG-TGTT---TACTCC-TCC--TAAGC-Attagaattat
gi|17 : acagg----------G---------------G--TTTCAAACAGTCACAT-TAAA-GACAGGCATTTTCG-TAA---AAAT---TATATGGT----------CTGTATAGCG------ATT------TA--------G----TTTACCC-----ATGAT-GAC--------TCC--------CATCGAGTC-AAATG-CTA-TCTGAA-TGTG----TTT------CA----TA-------------GC---A--------------ATT
gi|18 : gtcaaacttctctatatttaatgtcgcaatagtttcaccatcaaacctgctgtggtgtgtatgtctctcaacgttattcaatacaaaaattgttctgccgtatgatcagattttgtatcgagcaggctaacttacaaggacacgttcctgtttgcagg---------------G--TTTCAA-CATTGCCGTTTAAA-GTCAG-TAGTTT-G-CAA---A--T---TCTGTGGT----------T--------GTT----ATATTGATTTA--------G----TTTGCCAG---TGCA---ACC--------TGC--------CATTGAGTC-AAATA-CAG-TTTG-G-CATG----TTT------AA----TACCGATTTCCTAGGTC---A--------------TTTTGT-AAACACT--GA---TTTCGACTAAGA-A-TTA--A-A--GT----T-TAC-C-CAAT--C--AAGTATA--------------G-ATCT-CA--TGG---CGG---AT--gttaagccgttttcccatacacttgatttgacaacaga
gi|27 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttaatcacagcaggctgctgtcaatcattttgatgcttcaggaTCAG-CATTTT-A-CAA---A--T---TCTATGGTAGTTATATAGC--------G------ATC------TA--------G----TCTGCCAG---TA-G---AAC--------TGC--------TAT-GGGTC-AAATG-T----ATG-A-CATG----TTT------CA----TT-------------CC---A--------------ATTCGT----------TA---TTT--AC-AC-------ACT-----GA----T-TAT-C-GAGT--------TGTA-------G----GGG-C--T-CA--CGG---CGG---AT--ATGA---C----CG-GT-T---GAC--AGGGAATTCA---TACTCT-TCC--AATGC-ACC-TGA--TCCCACCTC---A----GG-G-TGTC---C-----GGG-GGTCCG-TG-T--TTAC-C
gi|13 : ttcaaaaA---A--T---TATATGGT----------C--------GTT----ATAACGATTTA--------G----TTTGCAAA---TACA---ACT--------TAC--------GATTTGGTC-AAATG-TT--TCAC-A-CTAA----TTC------T-----TAAGCT---------TT---T--------------CTTTAA-ACATT----GA---TTTTTACTACGA-A-TTACTT-C--ATATACTGTAC-C-TGAT--C--AC-AATA-------AA---GGG-C--C-CG--TGG---AGG---GT--GTGA---C----CG-GT-T---AAC--AGGGTATGAT---TGCTCC-TCC--TGGGC-ACC-CGA--TCCCACCTC----------------------------A-GACTCG-TG-T--TTGC-CCA-A-CC-CT-T-TA-ATTTGTA---TTCC--GA-AT-AAG-ATTT---AT-GAGA-CC-GG-T--ACTG-AT-CG-T-T---A--C-CT-T
gi|15 : taggctgtttaag---A--T---TCTATGGT----------C--------G------TTA------TAACAATTAAG----CTTACCAA---TATG---ACC--------TAT--------CATTGAGTC-AAATG-CTG-TCTG-A-TATG----TTT------CA----TA-------------GC---AAATGTAAAGCCGTTTTTCAC-ACACT----GA---TTT-GACTACGG-A-CTGTTC-C--GT----T--AC-C-TGAT--C--AA-GACT-------AT---GAG-C--T-CA--CGG---CGG---GT--GTGA---C----CG-GT-C---AAC--AGGGGATGCT---TCTCCC-TCC--TAGGCCACC-TGG--TCCCACCTC---T----GGTG-TGTC---C-----AGG-GGTCCG-TG-A--TTGC-CCA-A-CT-CT-T-GT-TTTTGTA---TTCT--AT-TT-AGG-ACTT---AC-GAAA-TT-GA-T-CACTGTTT-CG-T-T---A--T-CT-TTG---C-TT-T----------ACA---TG-TTTcacctattcatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|2 : ATG---ACC--------TAC--------AATTGA-TC-AAATG-CTG-T-TG-A---TG----GTT------CA----TAA------------CC---ATTGTTAAGC-----CTTTTC-AC-CAATGTGA---CTTTGACTACG--A-TT--TC-C--GT----G--AC-C-TGAT--CTAAG-GACT-------AT---GG-----C-TA--CGG---GGGTAGGT--GTAC---A----GG-GGTC---AAC--CAGGTCTGCT---TAC-----CC--TAGGC-ACC-TGA--CCCCACTCG---TAACAGGAT-GGTC---C-----AGGTGTTCCG-TA-A--TGAC-TCA-A-TT-CT-T-G---TTTGTA---TTAT--AT-TT-AGG-AC-T---GC--AGACTT-GA-TCCACTG-TT-C--T-TAA-A--T-C--TTG-----CC-T----------ACATTCTG-CTtgtcagaaccactctgattgcccacacaagtac
gi|21 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttctttgaatccgagacaagctacttatcagacgaaagtttcggttgcagaggttatcaaagggtcacggtaaagccagatttccgtaatctatggtcctatattataacaatttagttgacttattCC--------TGC--------CATTGGGTC-AAATA-ATG-TCTG-A-CGTG----TTTCTTGGCTA----T--------------TCTTAAGGTGTT--------CTTTGT-ACACA----TA---TTTTGACGACGG-A-TTACTC-C--GT----T-TAC-C-TGAT--C--AG-GACT-------AT---GGG-C--T-CA--CAA---CAG---GT--ATGA---C----CG-GT-C---TAC--AGGGGATGCT---TACTCC-TCT--TAGGC-ACC-CGA--TCTCCCCTC---T----GGTG-AGTC---C-----AGG-GGTCAT-TG-T--TTGA-CCA-A-CT-C--------TTTGTT---TTCT-------------CTT---AC-GAGA-TT-GA-T-CACTA-TT-CG-T-T---A--T-catattggatatactttaggaa
gi|11 : cccaaacaaC--------CATTGGGTC-AAGGC-TTG-TCTA-AACGTA----TTCG-----TAGGAATT-------------TC---AAGCCGTT-------CTT-AT-ACACC----GA---TTTCGACTACGG-A-TTAATC-C--AT----T-TAT-C-T-AC--CAAAA-AACA-------AT---GGG-A--T-C---CGG---CAG---AT--TTGA---C----AG-GT-T---AAA--AGGGTATGCT---TACT-C-TCC--TATGT-ATC-TGA--TTCCACCTC---T----GGTA-TATCAAGCTTTTAAGG-GGTCCG-TGTT--TTGC-CCA-A-CT-TT-T-GT------TA----TCT--GT-TTGGGG-ACCA---AT-GAG--CC-GG-T-CACTG-TCACA-T-TTTAA--T-CT-TTG---C-CT-T----------tgtcgccttttca
gi|9 : tttaatggttgttataacgtggtcattcaccagtacaaccgTTCAC-ACCCAT---GA---TTT-GACTACGGGA-TTGTCC-C--GT----T-TAC-CCTGATTTC--AA-GACT-------AT---GTG-CC-T-CA--CGGGACCGG---GT--GTGA---A----CC-GG-T---AAC--AGGAGAAGCT---TACTCC-CTC--TAGGT-ACCTTGA--TCCCACCTC---T----GGTTGTGTC---C-----AGG-GGTCCG-TG-TCACTTT-CCA-A-CTACT-TAGT-TTTTGTATGGTTCTC-ATGTT-TCG-ACTT---ACGGAGATTT-GA---CACTG-TT-CG---T---A--T-CT-TTttcataactaaattttacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|22 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgttttaaatcgaaggcaagtacttacagacaagttgttgctgtaggggtttcatttgccattgtttaagccgtttttTTAT-ATATA----GA---TTT-GTCAAAGG-A-TTACCC-CC-GT----TCTAA-C-TGAT--C--AA--ACA-------ATA--GGG-C--T-TATTTGA---AGG---GT--GTGA---C----CGCGT-C---AGC--AGGGGG-GTT---AATTAC-TCCAATAAGT-ACC-TTACCTCCCA-------T----GATA-CAAT---C-----AGG-GGTACG-TG-G--TCTC-CGATA-TA-CT-T-AA-TCTGTTG---TTC---GT-----GA-ACTT---AC-AAGA-AT-GA-T-CTCTG-TT-CA-T-T---A--T-TT-TTG---CATT-T----------TCATTCTtgcctttactagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
gi|51 : aaggtattcttatttaTTAT-ACGCT----GA---TTTTGACTACAT-A-TTACTC-C--GT----T-CAG-C-TAAT--C--acatctttcaatcattaattgtcatattaca
gi|38 : TTTGACTACGG-A-TTGTTC-CTTGT----T-AAC-T-TGAC--T--AA-TATG-------A----GGG-A--C-----TGG---AGT---GTTAGTGA---AGACCAG-AA-C---AAC----GAGA-GCT---AATTCA-T-C--TAGGA-ACA-GGA--TCCC
gi|37 : TTGACTACGTGA-TTGTTCTC--TT----T-TACAG-TGAC--C--CA-TAGAGCGCTATAT---GGGCA--T-C---CGG---C-A---GT--GTGA---C----GC-AG-CA--AACTAAAGGGATGCTTTATACTCC--CC--TAGAC-ACCACAA--TCCCACCcagaacacaaaaataacgaacaatgaa
gi|6 : T--GTGA---C----CG-GT-C---AAC--AGGGGATACA---TACTCC-T-----AGAC-ACC-TGA--TCCCACCTC---T----GGTG-TGCC---C-----AGG-GGTCCG-TG-T--TTGC-CGA-A-CT-CT-TGGT-TTTTGTA---TTCT--AA-TT-GGG-ACTT---AT-GAGA-TT-GA-T-GACTG-TT-CG-T-T---G--T-CT-TTA---C-AT-T----------GTGATCTctcctcggttg
gi|35 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgt-TCC--TAA---ACT-TG---TCTCACATCATTT----GGTA-TACC---A-----AGG-AGTCTG-TG-T--TTGC-TCA-A-CT-CT-T-GT-TTATGTA---TCCT--GT-TT-TGG-ACTT---AC-GAGA-TT-GA-T-CACTG-TT-CG-T-T---A--T-CT-TCG---C-TT-T----------ttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|32 : tgatgaa--TAAGC-ACC-TAA--TCC-ACCTC---T----GGTG-TATC---C-----AGG-AGTCC---------------------------AT-TTTTGTA---TTCC--GT-CT-AGG-ACTT------GAAA-AT-GA-caactacgcggg
gi|32 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagattAAGC-ACC-TAA--TCCCACCTC---T----GGTG-TATC---C-----AGG-AGTCCA-TG---------------------------TTTGTA---TTCC--GT-CT-AGG-ACTTGAAAC-GTAT-TT-GA-TGCATTG-
gi|49 : C-TG---TCCCACCTC---T----GGTA-TGTC---C-----AGA-G-TCTG-TG-T--TTGC-CGT-A-TT-CT-C--T-ATTTATA---Taaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|42 : cgA--TCATGCCTC---T----GGTA-TATT---A-----AGG-GGACTG-TG-T--TTGC-CCA-T-CT-CT-T-A--TATTATA---TTC
gi|48 : cttac---T----AGTT-T--C---C-----AGG-GATCAA-TG-T--TTGCGTCA-ATCT-CT-T-AT-TTTTATA---TT-G--AT-TT-AGG-GACT---AC-GAcgtatcaatcggagcgtcac
gi|44 : GTT-TTTC---C-----CGG-GATCCT-TG-T--TTGA-C---A-TT-CTCT-ACATTTTGTA---TTCTCAA-----AGG-AATT---AC-AAGA-TT-GA-T-CACT
gi|28 : -TGTC---C-----AGG-GGTCCG-TG-T--TTGC-CCA-A-CT-CT-T-GT-TTT-GTA---TTCT--AT-TT-GGG-ACTT---AC-GAGA-TT-GA-T-CACTG-AT-CG-T-T---G--T-AT-TTG---C-CT-T----------
gi|30 : taaataataaatcaatcaggagggtatatttgaataaaattggcaattgtagaaattgctttactgaagtaatagtgttacatttctaaaatatgcgaaactgcattatgtaA-A-CT-CT-T-GT-TTTTGTA---TTCT--AT-TT-AGG-ACTT---AC-GAGA-TT-GA-T-CACTG-TT-CG-T-T---A--T-CT-TTt
gi|47 : -T-GT-TTTTGTA---TTCT--AT-GT-AGG-CCTG---AC-AAGA-TT-GA-T-CACTA-TT-CG-T-T---A--T-AT-TTG---C-CT-T----------acctttacataaatgtattttaaaactgacttttaaagattggcacaattgaattacatgtgcatgtagacgtacatgactttatcttcaaacataatgtcacactccgaataaaaatatttaaat
gi|53 : tgtaGG-AATT---AT-GAGA-TT-GA-T-CACTG-TT-CG-T-T---A--T-C
gi|52 : TT---AA-GAGA-TT-GA-T-CACTG-TT-CA-T-T---A--T-CT-TCA---C-TT-T----------
gi|21 : aa-GG-T-CATTG-TT-TGAC-C---AACT-CT-TTG---T-TT-T---------------CT----------CTTACGAGATT-GATCAC-TA-TTCGTTAT-TGTCGCC-TTTTCA
gi|38 : cccaaacaacctgccattgggtcaaataatgtctgacgtgtttcttggctattcttaaggtgttctttgtacacatattttgacgacggattactccgtttacctgatcaggactatgggctcacaacaggtatgaccggtctacaggggatgcttactcctcttaggcacccgatctcccctctggtgagtccagg-T-CATTG-TT-CG-T-T---A--T----------T-TT-T----------GTGTTCTG-TTT---GAC-TACG-GATT-GTTCCT-TG-TT
gi|8 : gggatcctgttcctagatgaattagctctcgttgttctggtcttcactaacactccagtccctcatattagtcaagttTG-TT-TG-TCT---A--A-CTCTTG---T-TT-T----------GTATTCTA-TGAA-GGACTTACGAAATT-GATCAC-TG-TTCATTAT-GTTTGCC-CTTTCATa
gi|35 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagattttgattcgaggcaagactacttacaaacaacttgtcgcagggattttgaaaagttacgtttaaaggcattatttcgcaagttctatggtcgttataacgatctactatgcccatacaaactgccaatgagtcaaatgctgtctgacatgtttcatagcaattattaagctgtttttcatacactgaattttttgactgcatattattccatttacttgatcaagacaatgggctcaaggcgggtgtgacctctcgacagggtatgcttacgccttttaggcacctgatcccaactctggtatgcccaggggtctgTG-TT-TG-C-TCA-A--C-TC-TTG---T-TTAT----------GTATCCTG-TTTT-GGACTTACGAGATT-GATCAC-TG-TTCGTTAT-CTTCGCT-TTTTCATCactctgatgccatagaagtacat
gi|10 : t---A--C-CT-TGG---T-TT-A----------GTATTCTATTTTG-GCATTTACGAGATTCGATTTA-CGTTTCGTTATATTTTGCCTTTTTCATcagactccttggtataccaaatgatgtgagacaagtttaggacaactacgcggg
gi|29 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttttgattcgaggcaagttgacttacaaacaagttgtttatcacaggggtttcgacagtcacgtttaatggcagcatttcgacaagattcaatgatttaatttgcccatacaattctgttcatctggtccaaacacttgctctgacatgtttacatagcaattgttaggacgtttttcattacactgattctgagtatggacttactcccgtctacctgatcaagacaatgggctcacgacgggtggacccggtcaacagggatgcttactccttccgaggcatctctggtgtgtccaacggtccgttgtattgccca---A--T-TC-TTA---A-TT-T----------GTATTCCA-TATG-TGAGTTATAATATT-GATCAC-TG-CTCGTTAT-CTTCGtttgataaagacgtttctaattttttgtaaa
gi|15 : gctcacggcggatgtgatctattgactagggatgtttactcctcctaagcacctgattacgccgctggtatatccagggaccagtttttttccaa--T-CT-TGT---T-TT-T----------GTATTCTA-TTTA-GGACTTACGAAATT-GATCAC-TGTTTCGTTAT-CTTTGC--TTTACATatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|6 : attctatggtcgttataacaattaagcttaccaatatgacctatcattgagtcaaatgctgtctgatatgtttcatagcaaatgtaaagccgtttttcacacactgatttgactacggactgttccgttacctgatcaagactatgagctcacggcgggtgtgaccggtcaacaggggatgcttctccctcctaggccacctggtcccacctctggtgtgtccaggggtccgtgattgcccaac--T-CT-TGG---T-TT-TT---------GTATTCTA-ATTG-GGACTTATGAGATT-GAT-GACTG-TTCGTTGT-CTTTACA-TTGTGATCgttttgtcagaaccactctgattgcccacacaagtac
gi|30 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgttgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaac--T-CT-TGT---T-TT-T----------GTATTCTA-TTTA-GGACTTACGAGATT-GATCAC-TG-TTCGTTAT-CTTTACC-TT----------TACATAAATGTAT-T-TT---AAAtttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|28 : aac-TTG---T-TT-T----------GTATTCTA-TTTG-GGACTTACGAGATT-GATCAC-TG-ATCGTTGT-ATTTGCC-TTTACAT--A-ATGCAGTTTCGCATAT-TTTAGAAATGT--actgacttttaaagattggcacaattgaattacatgtgcatgtagacgtacatgactttatcttcaaacataatgtcacactccgaataaaaatatttaaat
gi|47 : taaataataaatcaatcaggagggtatatttgaataaaattggcaattgtagaaattgctttactgaagtaatagtgtt---T-TT-T----------GTATTCTA-TGTA-GGCCTGACAAGATT-GATCAC-TA-TTCGTTAT-ATTTGCC-TTTACAgagttgggcaaacacggacccctggacat
gi|4 : -TT-T----------GTATTCCG-TATA-GAAATT--GAGATC-GATCAC-TG-TTCGTTAT-CTT--CA-TCTTTATaca
gi|22 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaaatcaagacaggctactgacgaacaagttggtgctacaagggagtcaatagtcagcatttcgcaaattctatggtcgatataacgatccagtttgccagtataacatgccagtggatcaaatgccgtttgacaagacagtttcataccaattgctaggccgttctttatacacagattttcactactacctgataaagtttaaggattcacagtggatgtgaccggcggacaggggatgcttactcctgctatgtatcttatctcacctctggtatattcagagagctatgttagcccaactctaaTG-TTCGTGAACTTACAAGAAT-GATCTC-TG-TTCATTAT-TTTTGCA-TTTTCATTC---TACATCTTTCAAT-CATT---AATTGT--CA-TAT-TACAagtgcgagtattctggacgtacg
gi|53 : aaggtattcttatttattatatatagatttgtcaaaggattacccccgttctaactgatcaaacaatagggcttatttgaagggtgtgaccgcgtcagcaggggggttaattactccaataagtaccttacctcccatgatacaatcaggggtacgtggtctccgatatacttaatctgt-GGAATTATGAGATT-GATCAC-TG-TTCGTTAT-C
gi|30 : ATTTAAATATTTTTAT-T-CG---GAGTGTGACATTATGTTTGAAGA---------TAAAG-TCATGTACGTC-TA-CA---TGCACATGTAATTCAATTGTGCCAATCTTTAAAAGTCAGTTTTAAAA----------TACATTTAT---GTAAAGGTAA--AGA--------T-AACGAA--C----A-------GTG-A--------TC-AA-TCTC-GT---AAGT-CCT-AA-AT--AGAA---TACAAAA-AC-A-AG-AG-T-T-
gi|28 : TTCTAAAATATGCGAAACTGCATT-AT---GTAAAGGCAA--A----------T-A-------C----AACGATCAGTG-A--------TC-AA-TCTC-GT---AAGT-CCC-AA-AT--AGAA---TAC-AAA-AC-A-AG-AG-T-T-GG-GCAA--A-CA-CGGACC-CCT-----G---GACA-
gi|15 : taaataataaatcaatcaggagggtatatttgaataaaattggcaattgtagaaattgctttactgaagtaatagtgttacatCAAA--ACAT--GTAAAGCAAAGATAACGA----------A-A-------C----A-------GTG-A--------TC-AA-TTTC-GT---AAGT-CCT-AA-AT--AGAA---TACAAAA-AC-A-AG-AG-T-T-GG-GCAA--T-CA-CGGACC-CCT-----G---GACA-CACC----A---GAGGTGGGA--CC-A-GGTGGCCTA--GGA-GGGAGA---AGCATCCC-CT--GTT---GA--C-CG-G-T-C---AC--ACCCG---CC--GTGA-G-CTC-ATA----G-TCT-T--G--A-TCA-G-GT--A----AC--G-GAACAG-T-C-CGTAGT-C-A-AA----T--C-A---G--TGT-GT--GAAAAACGGCTT--t
gi|11 : attctatggtcgttataacaattaagcttaccaatatgacctatcattgagtcaaatgctgtctgatatgtttcatagcaaatgtaAAA-TTTAGTTAT---GAAAAGGCAA--AGATTAAAATGTGA-------C----A-------GTG-A--------CC-GG--CTC-AT---TGGT-CCCCAA-AC--AGA----TA------AC-A-AA-AG-T-T-GG-GCAA--AACA-CGGACC-CCTTAAAAGCTTGATA-TACC----A---GAGGTGGAA--TC-A-GAT-ACATA--GGA-G-AGTA---AGCATACC-CT--TTT---AA--C-CT-G-T-C---AA--ATCTG---CC--G-GA-T-CCC-ATT----G-TTT-TTTG--G-T-A-G-ATA-A----AT--G-GATTAA-T-C-CGTAGT-CGA-AA----T--C-G---G--TGT-AT---AAGAACGGCTT--GAAATtcagaaccactctgattgcccacacaagtac
gi|8 : tttaatggttgttataacgtggtcattcaccagtacaaccgccattgggtcaaggcttgtctaaacgtattcgtaggaTAT---GAAAGGGCAA--A----------C-ATAATGAAC----A-------GTG-A--------TC-AA-TTTC-GT---AAGT-CCT-TC-AT--AGAA---TACAAAA--C-A-AG-AG-T-T-AG-ACAA--A-CA-CAGACC-CCT-----G---GGCA-TACC----A---GAGTTGGGA--TC-A-GGT-GCCTA--AAA-GGCGTA---AGCATACC-CT--GTC---GA--G-AG-G-T-C---AC--ACCCG---CC--TTGA-G-CCC-ATT----G-TCT-T--G--A-TCA-A-GTA-A----AT--G-GAATAA-T-A-TGCAGT-C-A-AAAAATT--C-A---G--TGT-AT--GAAAAACAGCTTA-ATAAT--------T-GCTAT-GAAACATGTCAGtacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|21 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagattttgattcgaggcaagactacttacaaacaacttgtcgcagggattttgaaaagttacgtttaaaggcattatttcgcaagttctatggtcgttataacgatctactatgcccatacaaactgccaatgagtcaaatgctgtT---GAAAAGGCGACAA----------T-AACGAA--T----A-------GTG-A--------TC-AA-TCTC-GT---AAG-------------AGAA---AACAAA--------G-AG-T-T-GG-TCAA--A-CA-ATGACC-CCT-----G---GACT-CACC----A---GAGGGGAGA--TC-G-GGT-GCCTA--AGA-GGAGTA---AGCATCCC-CT--GTA---GA--C-CG-G-T-C---AT--ACCTG---TT--GTGA-G-CCC-ATA----G-TCC-T--G--A-TCA-G-GTA-A----AC--G-GAGTAA-T-C-CGTCGT-C-A-AA----A--T-AT--G--TGT-AC--AAAGAAC-ACCT---TAA-G--AA--ctctgatgccatagaagtacat
gi|6 : cccaaacaacctgccattgggtcaaataatgtctgacgtgtttcttggctaT---GTAAAGACAACGA------------A-------C----A-------GTC-A--------TC-AA-TCTC-AT---AAGT-CCC-AA-TT--AGAA---TACAAAA-ACCA-AG-AG-T-T-CG-GCAA--A-CA-CGGACC-CCT-----G---GGCA-CACC----A---GAGGTGGGA--TC-A-GGT-GTCTA--GGA-G---TA---TGTATCCC-CT--GTT---GA--C-CG-G-T-C---AC--A
gi|47 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgtT---GTAAAGGCAA--A----------T-A-------T----AACGAATAGTG-A--------TC-AA-TCTT-GT---CAGG-CCT-AC-AT--AGAA---TACAAAA-AC-A-ttgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|9 : ---GTAAAGGCAA--AAGA-------T-A-------CGAACA-------GTG----------TC-AAATCTCCGT---AAGT-CGA-AACATG-AGAACCATACAAAA-ACTA-AGTAG-T-T-GG-AAAGTGA-CA-CGGACC-CCT-----G---GACACAACC----A---GAGGTGGGA--TC-AAGGT-ACCTA--GAG-GGAGTA---AGCTTCTC-CT--GTT----A--C-CG-G-TTC---AC--ACCCGGTCCC--GTGAGG-CAC-ATA----G-TCT-T--GAAA-TCAGG-GTA-A----AC--G-GGACAA-TCC-CGTAGT-C-A-AA----T--C-ATGGG--TGT-GA--AAAAAACGGCTTAAACAATGGCAA--AT-G
gi|13 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgttttaaatcgaaggcaagtacttacagacaagttgttgctgtaggggttt---GTGAAGGTAACGA----------T---------C----A-------GT--A--------CC-GG-TCTC-AT---AAAT-CTT-AT-TC--GGAA---TACAAAT-TA-A-AG-GG-T-T-GG-GCAA--A-CA-CGAGTC-T----------------------------GAGGTGGGA--TC-G-GGT-GCCCA--GGA-GGAGCA---ATCATACC-CT--GTT---AA--C-CG-G-T-C---AC--ACCCT---CC--ACGG-G-CCC-TTT----A-TTG-T--G--A-TCA-G-GTACAGTATAT--G-AAGTAA-T-T-CGTAGTAA-A-AA----T--C-A---A--TGT-TT--AAAGAAAAGCTT--Atagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
gi|10 : taggctgtttaagaattatatggtcgttataacgatttagtttgcaaatacaacttacgatttggtcaaatgtttcacactaattctAAAGGCAA--AA---------T-A-------T----A-------ACG-AAACGTAAATCGAA-TCTC-GT---AAATGCCA-AA-AT--AGAA---TACTAAA-CC-A-AG--G-T-T-GG-GCAAT-A-CAACGGACC-GTT-----G---GACA-CACC----A---GAGATG---------------CCTC--GGAAGGAGTA---AGCATCCC--T--GTT---GA--C-CG-GGT-C----C--ACCCG---TC--GTGA-G-CCC-ATT----G-TCT-T--G--A-TCA-G-GTA-G----ACG-G-GAGTAAGT-C-CATACT-C-AGAA----T--C-A---G--TGTAAT--GAAAAACGTCCTA-ACAAT--------T-GCTATGTAAACATGTCAGctattcatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|4 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttttgattcgaggcaagttgacttacaaacaagttgtttatcacaggggtttcgacagtcacgtttaatggcagcatttcgacaagattcaatgatttaatttgcccatacaattctgttcatctggtccaaacacttgct-A-------C----A-------GTG-A--------TC-GA-TCTC------AATT-TCT-AT-AC--GGAA---TACAAA---T-T-AG-AG-T-T-GG-GCTA--A-CA-TAGCTC-TCT-----G---AATA-TACC----A---GAGGTGAGA--TA-A-GAT-ACATA--GCA-GGAGTA---AGCATCCC-CT--GTC---CG--C-CG-G-T-C---AC--ATCCA---CT--GTGA-A-TCC-TTA----A-ACT-T--T--A-TCA-G-GTA------------------------GTAGTGA-A-AA----T--C-T---G--TGT-AT--AAAGAACGGCCT--Attcattttgataaagacgtttctaattttttgtaaa
gi|2 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaaatcaagacaggctactgacgaacaagttggtgctacaagggagtcaatagtcagcatttcgcaaattctatggtcgatataacgatccagtttgccagtataacatgccagtggatcaaatgccgtttgacaagacagtttcataccaattgc-A-------C----A-------GTGGA--------TC-AAGTCT--GC---A-GT-CCT-AA-AT--ATAA---TAC--AA-AC-A-AG-AA-T-T-GA-GTCA--T-TA-CGGAACACCT-----G---GACC-ATCCTGTTA---CGAGTGGGG--TC-A-GGT-GCCTA--GG-----GTA---AGCAGACC-TG--GTT---GACCC-CT-G-TAC---ACCTACCC----CC--GT-A-G--CC-ATA----G-TCC-TTAG--A-TCA-G-GT--C----AC--G-GA--AA-T---CGTAGT-C-A-AAG---TCAC-A---T--TG--GT--GAA-AA-GGCTTA-ACAATG---------GTTAT-tcgttatcttcatctttatagtgcgagtattctggacgtacg
gi|35 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttctttgaatccgagacaagctacttatcagacgaaagtttcggttgcagaggttatcaaagggtcacggtaaagccagatttccgtaatctatggtcctatattataacaatttagttgacttattatgacctacaattgatcaaatgctgttgatggttc-A-------C----A-------GTG-A--------TC-AA-TCTC-GT---AAGT-CCA-AA-AC--AGGA---TACATAA-AC-A-AG-AG-T-T-GA-GCAA--A-CA-CAGACT-CCT-----T---GGTA-TACC----AAATGATGTGAGA--tcttaaatcttgcctacattctgctcatattggatatactttaggaa
gi|22 : tgatgaaaaagcgaagataacga-A-------C----A-------GAG-A--------TC-AT-TCTT-GT---AAGT-TC-----AC---GAA---CAACAGA-TT-A-AG-TA-TAT-CG-GAGA--C-CA-CGTACC-CCT-----G---ATTG-TATC----A-------TGGGAGGTA-A-GGT-ACTTATTGGA-GTAATT---AAC-CCCC-CT--GCT---GA--CGCG-G-T-C---AC--ACCCT---TCAAATAA-G-CCCTATT----G-T-T-T--G--A-TCA-G-TTAGA----ACG-G-GGGTAA-T-C-CTTTGA-C-A-AA----T--C-T---A--TAT-AT---AATAAcaagtttaggacaactacgcggg
gi|53 : aaggtattcttat-A-------C----A-------GTG-A--------TC-AA-TCTC-AT---AATT-CCtcattatttttgcattttcattctacatctttcaatcattaattgtcatattaca
gi|29 : -------C----A-------GTG-A--------TC-AA-TATT-AT---AACT-CAC-AT-AT--GGAA---TACAAAT--T-A-AG-AA-T-TTGG-AAAA--A-AA-CTGGTC-CCT-----G---GATA-TACC----A---GCGGCGTAA--TC-A-GGT-GCTTA--GGA-GGAGTA---AACATCCC-TA--GTC---AA--T-AG-A-T-C---AC--ATCCG---CC--GTGA-G-Ctcgttatc
gi|32 : -------C----A-------ATGCA--------TC-AA-ATAC-GTTTCAAGT-CCT-AG-AC--GGAA---TACAAA----------------------------CA-TGGACT-CCT-----G---GATA-CACC----A---GAGGTGGGA--TT-A-GGT-GCTTctcgttatcttcgatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|44 : ----A-------GTG-A--------TC-AA-TCTT-GT---AATT-CCT-----TTGAGAA---TACAAAATGT-AGAG-AA-T----G-TCAA--A-CA-AGGATC-CCG-----G---GAAA-AACaaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|32 : --------TC-AT-TTTC------AAGT-CCT-AG-AC--GGAA---TACAAAA-AT----------------------------GGACT-CCT-----G---GATA-CACC----A---GAGGT-GGA--TT-A-GGT-GCTTA--
gi|48 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagattTC-GT---AGTC-CCT-AA-AT--C-AA---TATAAAA-AT-A-AG-AGAT-T-GACGCAA--A-CA-TTGATC-CCT-----G---G--A-AACT----A---
gi|42 : GAA---TATAATA--T-A-AG-AG-A-T-GG-GCAA--A-CA-CAGTCC-CCT-----T---AATA-TACC----A---GAGGCATGA--T
gi|14 : cttacAA---TAGATAA-GG-A-AT-AG-A-T-GG-TCAA--A-CA-CGGACC-TCT-----G---GATA-TACC----A---GAGATGGGA--TC-A-AGT-ACCTT--GG-----GTA---AA-ATCCC-CT--GTTCAAGA--C-CG-G-T-T---AC--ACCCG---CA--GTTA-G-CCT-TAA----A-TTT-T--G--A-TAA-G-G-A-A----AT--C-GAATAA-T-C-TGTAG------------G--C-A---G--TGT-AT--AAAGAACGACCT--Acgtatcaatcggagcgtcac
gi|49 : agcctgttctatgcacggccagttttttaatcgaggcaggctaccgacaaacaagttcatgttacaggggttccaaccgtctcgtttgaagtcggcatttcacagtctatagatgcatggtcgttataacgatctagagtgccaacctgtcgttgggtcaaatgatgttcgacatgtatcatactaattgtA---TATAAAT-A--G-AG-AA-T-A-CG-GCAA--A-CA-CAGA-C-TCT-----G---GACA-TACC----A---GAGGTGGGA--tgacccaatagcaggttg
gi|27 : cgctgG-GTAA--A-CA-CGGACC-CCC-----G---GACA-C-CC----T---GAGGTGGGA--TC-A-GGT-GCATT--GGA-AGAGTA---TGAATTCC-CT--GTC---AA--C-CG-G-T-C---AT--ATCCG---CC--GTGA-G-CCC-----------CT--------------------------------ACAA-C-T-CG--AT-----AA----T--C-A---G--TGT-GT--AAATAACGAATT--GGAATG--AAACAT-GTCAT-
gi|37 : ttcaaaatcagcattttacaaattctatggtagttatatagcgatctagtctgccagtagaactgctatgggtcaaatgtGGTGGGA--TTGT-GGT-GTCTA--GG--GGAGTATAAAGCATCCC-TTTAGTT---TG--C-TGCG-T-C---AC--ACT-G---CC--G-GATG-CCC-ATATAGCGCTCTAT--G--GGTCA-CTGTA-A----AA--GAGAACAA-T-CACGTAGT-C-A-A
gi|38 : GGGA--TC-C-TGT-TCCTA--G-A-TGAATT---AGC-TCTCGTT--GTT-------C-TG-G-T-CTTCACTAACACT---CC-----A-G-TCC-CTC----A-TAT-T--A--G-TCA-A-GTT-A----ACAAG-GAACAA-T-C-CGTAGT-C-A-AA-------C-A---GAACAC-AA--AAATAACGA-----ACAATG--AA--ctcctcggttg
gi|26 : T-GCTTA--GGA-GGAGTA---AACACCCC-TA--GTC---AA--T-AG-A-T-C---AC--ATCCG---CC--GTGA-G-CCT--------------------------G-GTA-A----AC--G-AAGTCA-T-C-CATGGT-C-AGAA----T--C-A---A--TGT-AT--AAAGCACGACCT--A
gi|54 : acaggggtctcaacagtctcgtttgaagtccgtattttgcaaattctatggtcgttacttataacgatctagtttgccaatatgtacaaatttggcgttgggtcaaatgctatctaacgtgtttcataccaattgg--C-CG-G-T-C---AC--ACTCG---CC--GTGA-G-CTC-ATA----G-TC
gi|18 : --ATCCG---CC--ATGA-GATCT-ATA-------CT-T--G--A-TTG-G-GTA-A----AC--T-T--TAA-T-T-CTTAGT-CGA-AA----T--C-A---G--TGT-TT--ACAAAATGACCT-----AGG--AA--ATCGGTAT-TAAACATGCCA
gi|51 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttaatcacagcaggctgctgtcaatcattttgatgcttcaggagtttcaacattgccgtttaaagtcagtagtttgcaaattctgtggttgttatattgatttagtttgccagtgcaacctgccattgagtcaaatacagtt--G--A-TTA-G-CTG-A----AC--G-GAGTAA-T-A-TGTAGT-CAA-AA----T--C-A---G--CGT-AT--AA
gi|17 : -T-C-TGTTGT-C-A-AA----T--CAA---G--TGT-ATGGGAA-AACGGCTT--A
18 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TCTTTCAAACGACGAAATTCTACAAAATCACGCTTCAGCTTTAATCACATTTAATATCCCAGTCAATGGGACGGACGAATATGAATTATCGTACCTATGCTGGATTCATAAAAAAACCCTTACAAAGATACATTGCTGAGTCTAGTAAATGTTCCACCAAACCCCTGTCGTTACTCTTCACGAAAATATTGACTGCTGTCAAGGATCAACCTTCAGACGTATTGTGAAAGTACATATGCCAGAAGTGGTAATGTGGATTCTAAAAGATTCTTCTAAACAATTCTAGTGAATTTGAAATCCCAGAACCTTTCTCATATCAACAACATCGAATCATGTGATTTTTCAAAAAATTCATAACCATTCCGCACGATGAATTATAGGTAAGACTTTGTAAAGTTACAAACGATTGCTTCTTTAACAAAAATGGAAAGGAAATATTCATATCTAATGATCAGCCATTCACAAAATTACTCTGATTCTAAACACAAGTACTCCGAAGTTGATATCAAAGCAATGCTGGAGTTCCTCATTGACAATATCTTTGTAGTTTTTGGCAATCAGGTCTTCCAACATTCTGTTGTAATTCCAATTGTCACGAATTGTGTTCCTTTGTTAGCGGACCTATTTTTATATTCTAATGAGGCAGAATGCATTCAAAAGCTTCTACATGAAAAGAAGAAATCTGTAGCGGGGACCTTTAATTCGACATATTGACGAGGTTTAGTATTAATGGTTTTCATGCATATGTCGATTTAATCGAAACGAACTAGAAATAAAGGACACCACATAATAACCCATGCCTGCTTCAAACTTGGATATTTTATTGAACATTGACATTAACGGCAAACTATCTACTTAACGTTATGACAAATGGGACGATTTTA
Unaligned ( gi|7 ): ATTAAAAAGAACTTTATACCTTGTCAGAATGGATAAAAAGTATAAGAAGAATATTAAAATCCCGTATTACACAAATGAAAACAAAAGTGTGTATCACCTAGCCTTCTGTGTTTCGAAAACCAGAAGTGATCAAAGAATTAGATAGGATACATGAGAAATATGTTTTGGTTCCAGCTGGCAAAGTCTGTAACAACATTGTCTTCGTCTGTAAGGCTCATTATTACAACTGTATTTTGAACGAACTTGGTATTAACTCAACATTTGGTAATCGTACTTACACTCCAACTGCTCTTTCAAAAGAGGAAAATCTTCAAAATCGTGTTTCAGTTTTATACACTTTTAATATCCTAATCAATGGGACGGATGTTACCGTACCTATACTGGATTCCAAAACTTTGCAAAAAAAAAAACCCAAAAACAAAAACAAAAAAAAACCTAGCAAAGACACATTGCTGGATCAAGTAAATGTTCCATCAAGCCCCTGTCTTTACTCCTCACGAAAATTATTTACACTTGTGAAGGAGCATTGCTTTAGACGTATTGTTCAACAGCATATATGCAAGAAGTGGGGTAAATCAAATTTGGATTC
Unaligned ( gi|12 ): ATGTTTATATTCTTGTGACGCAGAATTAATTCAGAAGCTTCTACATGAGATAACTCGACAATTAGATACATGTACTAACGAACTAGAAATAGAGGACACCACAGAGGTCTTTCCATGTCTCGTTCCGTACTGATATTTTTATAGAACATTGACATTACGCCAAACCTAACTTACTCAACTTTATAACAAACGGGACGGATTTCAGCTTCTCCATGTCAACTCCCCAATATTTATGTAGCAAGTATCCATCATCACATGTATAATGGGTGTGTATGTCTCTCAACTTATTCGATACGCAAGCAAGCTTGTTCTGCTATGATCAGGTTTTTGAATCGAGACATGTTTACTTAAGACAAGTTTGTTGTGCAGGGTTTTCAA
Unaligned ( gi|16 ): GATATATCAAAAAACTCTACACTTTAACCCACCATTTCGCACGATAAATTGGAAAAGACAACGACTTACGAGAAGTTTGTTTCGTTAACAATAAATGGAAAAGGGAATATTCTTATCTAGCGATCTGTCATTTCAAAAAATTATTCTGTTAAAACTCGCACTTCACATTCTACCCATCACAAGTACTGTATACTCTGAAGTTGAATATTTAAGCAATGCTGGCTTCCTCACTTTGTGAATGCGAGAAAATATCAATTTGCAATGTTCCTGTGAACCACAAGTTGTTCACCAATTCTCCATTTTCTGTATTCCATTTTTGATTGGACGTTCTCATTTTCTTA
Unaligned ( gi|23 ): CTTCCACATCTGCCTTTCTTATTTAGTGTTATAGTTGATCATAAATGTTAATCGGCAAACACGGTCCAAATTTCTAACCTTTCTAACAAATGGGATAATTTCTAAATTCTCTATAGTCAATCTTCCCAGCATTTTATTTTGCTGCTACTCGGTGTTTTTCTCACAACTGGATTCAAAGTAGCAAGAGTTTCAACGTATTACATTTTTAAAAATAAAAAAAATCGAGGACAGGCTAATGACAAAGCAATTAATGTTAC
Unaligned ( gi|24 ): ATTTTATATTGACAAAGGGATCCCCACTCTTAAAAATATTGGACAGCACTACCCTTGCAATATGCACTCTCTATCAAGTCTGTGTCTTTCTTGTACCCAAGTTTTCATCTCAAATATTCCTTCTCCAATAGAGGTACAATGATAATTAGGCAGGAGTTGCAGAGGAACAGAATGTCGAAAGGACAGACAGACAGACACAGCGCTGTTATGTCATGATACGCTCGCTTTTTATGTCGGGCATATAAAAAGT
Unaligned ( gi|25 ): AAAACAAAAAATGCATATTATCTACCAACTATGTTTAACCAACAAGAAGCGTATGAACCGAATTAGATAGGGAGTTTGAGGAATAAAAATATAGGCTCCAAGATGATAAAAGCTTGTACATATTGTCTTTTGTTTCTAAGGCTCATTAAAACAATAATTTTACAGGGAATTTGGATTTACGCCAACTTTAGTAATTCCAGTTTTACTTAAACTAAGTTCCTTCTCCAAAAGATGAAAAT
Unaligned ( gi|31 ): TTGGATGCTATATGAATACTCTGATACAATGGCGCAAGCTAGCAACCACTGTAATGACAAACATGGACATTTCATCTTCTCCAGCGTCAAGCTACCCATACTTATGAAATATTTATGAAACAAATCCATTATTAATTTGCATATGATATCTTATTCGATACGCAAGACGTGTCC
Unaligned ( gi|33 ): TGTTCCTTTTGGTTGCTGACCTGTTTTCGTATTCTTACGAGGCAGAATTTATTCAAAAGCTTCTTCAAGAGAAGAAAAAAATTTCTAACTGTGGCCTTTAACTCGACAGTCAGATATATTGATGACGTTTTATCTACTGAATATAATTATTTGCTTTTAT
Unaligned ( gi|34 ): TATCTAGTCAGATTTTTTGTCAAGAATTCTATAGGTAATGAAATAAAGGTCTATCATTTGCAAAACACAAGCTTTCAACTGGCCGTCCCCGAAATGTAGCTGGTGATCGAATTTCATACGAATTGTTGGAGGCTTCTTTATAC
Unaligned ( gi|36 ): CCTGTACGAGTATGGGATATTCTAAATGTTAAAAAAGCAGATGTTCTTTTCACTCTTTACTACAATTTATGGATACCAAGGTTACATTATAGTTCCAGATGTGACCAAAAAACTATCATGGCGACGATTGTT
Unaligned ( gi|39 ): AATGTTAAAATAAAGCAGATGTTCTTTTCACTCTTTACTACATTTATGATACAGGTTACAGTTATAGTTCCAGATGTGAACCAAAACTATCATGGCGACGATT
Unaligned ( gi|40 ): CCTTTTTGTCGTAATCTGATGAGGTAGAATTGAATCAAAAGCTTTACACCAGAAGCAGAAAATATCTTATCTTCGCCTTCATACATCGAC
Unaligned ( gi|41 ): AGGAGGAGTTGCAAAGACAAAGTGAAACAGACAGACAACAGCAGTATATAGCATAATACACCAGCATTTTTATACGGGCGTATAAAATTT
Unaligned ( gi|43 ): TTCTTACGAGGCAGAATTTTCTTAATTAAAAAAGTCTTCTACAGAAGAGGAAGAGAGAAATCTAGCTATATGCTTTT
Unaligned ( gi|45 ): AAACACTCTGATTCCAAACAGATATTCAGAGTAAAGCTGATATCAAACAGATTTTGGAGTTCTTCATT
Unaligned ( gi|46 ): AAATTCTGTCTGGTGTATTATAGTGGATTGTTAGCCGTGTTTTCATAATTGATTTGACAATGGATT
Unaligned ( gi|50 ): TCGTACCTATACTTCATAAAAACTCTTACAAAGATACATTTCCAAG
Alignments
lowQualScore : 77777777777777777777777777 11 77777777777777 2222222222 11111111111111111 11111 11111 1111111111 111 22222 111 111 8888888888 2 1 1 333333333 222 11 2222 11 66666666666 3333333 11 5555555555555555555555555555 1 1 1 1 111 1 1 11 2 22 22 1 222 1 22 2 11 2 333 11 1 22 22 2222
lowQualScore : 2 2 2 2 2 2 2 33 33 6666 44444444444444444444444444 33 00 2 6666 2 2 0 1 2 2 2 2 4444 88888888 5555 33 33333333333333 4 2 2 2 2 1 55555 2 2 2 33 2 2 2 2 4444 2 33 2 2 66 2 4444444444 77 6 2 99 33 333 2 33 2 44 2 77 7777777 2 66 77777777777777777 2 33 66 444 2 2 2 2 33 444 33 2 444 2 22 2 2 22 333 55555 333 44444 1 1 1 1 1 2 2 2 1 77777 55555 2 2 333 2 2 2 4 2 2 888 2 44444 5555555555 1 2 6 6 0 33 2 6 111 5 66666 44 1 22 444 5 444 1 2222222222 0 5 5 888888888 2 555 88 4444 88 55555555555 3 3 8888888 88 7 5555555555555555555555555555 3 0 0 1 0 0 777 3 0 0 88 2 0 33 4 11 3 333 3 3 77 0 22 0 555 00 0 77 77 6 7777 6
lowQualScore : . . . . . . . .. .. .... .......................... .. .. . .... . . . . . . . . .... ........ .... .. .............. . . . . . . ..... . . . .. . . . . .... . .. . . .. . .......... .. . . .. .. ... . .. . .. . .. ....... . .. ................. . .. .. ... . . . . .. ... .. . ... . .. . . .. ... ..... ... ..... . . . . . . . . . ..... ..... . . ... . . . . . . ... . ..... .......... . . . . . .. . . ... . ..... .. . .. ... . ... . .......... . . . ......... . ... .. .... .. ........... . . ....... .. . ............................ . . . . . . ... . . . .. . . .. . .. . ... . . .. . .. . ... .. . .. .. . .... .
lowQualScore : 9 9 9 9 9 9 9 99 99 1111 33333333333333333333333333 77 00 7 7777 9 9 1 0 9 9 9 9 9999 55555555 0000 22 33333333333333 7 4 5 7 5 2 66666 2 2 2 11 4 4 4 4 7777 4 66 2 2 11 2 9999999999 55 0 0 88 11 999 2 22 2 44 4 99 9999999 4 55 66666666666666666 4 22 11 111 4 4 4 4 22 111 22 4 111 2 99 0 0 66 777 33333 333 88888 9 9 9 9 9 0 0 0 9 99999 66666 2 1 777 2 2 2 7 5 7 333 4 00000 4444444444 5 4 7 7 4 55 5 7 777 2 99999 22 0 22 000 0 000 0 5555555555 0 0 0 000000000 5 777 77 0000 33 77777777777 7 7 3333333 33 3 5555555555555555555555555555 2 0 0 2 0 0 555 2 0 0 33 5 0 00 0 00 3 333 3 7 55 0 00 0 000 00 5 55 55 0 0000 0
consensus : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AA----GTT--G----T--G--T-T-----G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCTAT--------GGTC----GTTA--TAA-C--AA----T--T-A-GTTTGCC-AGT-ACG-----AC-CTGC-CATTGGGTC-AAATGC-T-G-TCT-G-ACGTG----TTT-CATA-CCAA-TT-GTT--A-GG--C-GT--C-TT--T-AT-ACAC-TG--A---TTTTGACTA-CG-GA-TTACTC-C--GT----T-TAC-CTGATC--AAG-AC--A-------AT-GGGC-TCAC--GGCGGGT--GT---G-A-C-CG-G--TC---GAC--AG-GGGATGCT---TACTCC-TCC--TAGGC-ACC-TGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGC-CC-A-A-CTCT-T-GT-TTTTGTATTCT--ATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG---C-TTT----------GTATTCTGTTTG-GG-ACTTACGAGATCGATCACTGTT-CGTT---ATCTTCGCNTTTTCATC---N-TACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCNATAAAGGTCATGTACGTCATAACACTGTGCANACGTAATT--CAATTGTG-CAAT--CTTTA--AAAGT----------CANTTNTAAA--AC-CAAA--TACATTTATGTAAAGG------CAA------CGNACA-------GTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AGTTGGGCAA--ACACGGACCCCTGGACANAACCAGAGGTGGGATCNAGGTGCCTAGGGGGAGTAAGCNTCCCCTGTTGACCGG-TCACACCCG---CCGTGA-GCNCATAGTCTTGAAATCAGGGTAAACGGGACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
Reference ( family-7 ) : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AA----GTT--G----T--G--T-C-----G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCTAT--------GGTC----GTTA--TA--C--A-----T--T-A-GTTTGCC-AGT-ATG-----AC-CTGC-CATTGGGTC-AAATGC-T-G-TCT-G-ACGTG----TTT-CATA-CCAA-TT-GTT--A-GG--C-GT--C-TT--T-AT-ACAC-NG--A---TTTTGACTA-CG-GA-TTACTC-C--GT----T-TAC-CTGATC--AAG-AC--A-------AT-GGGC-TCAC--GGCGGGT--GT---G-A-C-CG-G--TC---AAC--AG-GGGATGCT---TACTCC-TCC--TAGGC-ACC-TGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGC-CC-A-A-CTCT-T-GT-TTTTGTATTCT--ATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG---T-TTT----------GTATTCTGTTTG-GG-ACTTACGAGATTGATCACTGTT-CGTT---ATCTTTGCCTTTTCATC---A-TACATNTTTNTATT-TTAAATGT--CATTATGTNCGAA---------GATAAA-GTCATGTACGTC-T-ACA---TGCACATGTAATT--CAATTGTGCCAAT--CTTTA--AAAGT----------CAGTTCTAAAATATGCAAA--TACATTTATGTAAAGG------CAA------CATACA-------GTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AGTTGGGCAA--ACACGGACCCCTGGACACA-CCAGAGGTGGGATCA-GGTGCCTAGGAGGAGTAAGCATCCCCTGTCGACCGG-TCACACCCG---CCGTGA-GCCCATAGTCTTG--ATCA-GGTAAACGGAGTAAT-CCGTAGTCAAATCA---GTGTATAAAGAACGGCCT--ACAATG--AAATGCTATTAAACATGTCAG
gi|10 : TGATTC-GA-GGCA-AG-TTGA-CTTA-CAA--AC--AA----GTT--G----TTTA--T-CACAG-G----G--G--TT-TCGA-C--AG-TCA-CGTTTAATGGCAG-CATTT-C-GACAAGA--TTCAAT--------GAT------------------------T--T-A-ATTTGCC-CAT-ACA-----ATTCTGTTCATCTGGTCCAAACAC-TTGCTCT-G-ACATG----TTTACATA-GCAA-TT-GTT--A-GGA-C-GT--T-TT--TCATTACAC-TG--A---TTCTGAGTA-TG-GACTTACTC-CC-GT----C-TAC-CTGATC--AAG-AC--A-------AT-GGGC-TCAC--GACGGGT--G----G-ACC-CG-G--TC---AAC--A--GGGATGCT---TACTCCTTCC--GAGG--------------CATCTC---T-----GGTGTGTC---C-----AAC-GGTCCGTTG-TATTGC-CC-A-A-C-CT-T-GG-TTTAGTATTCT--ATTT-TGGCATTT---ACGAGA-TTCGATT-TACGT-TT-CGTT---ATATTTTGCC-T-TTT----------TCATTTTG
gi|11 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagttttAT--------GGTT----GTTA--TAA-C--G-----TGGT-C-ATTCACC-AGT-ACA-----AC-C-GC-CATTGGGTC-AAG-GCTT-G-TCTAA-ACGTA-----TT-CGTA-GGAA-TT-TCA--A-GC--C-GT--T-CT--T-AT-ACAC-CG--A---TTTCGACTA-CG-GA-TTAATC-C--AT----T-TAT-CT-ACCAAAAA-AC--A-------AT-GGGA-TC-C--GGCAGAT--TT---G-A-C-AG-G--TT---AAA--AG-GGTATGCT---TACT-C-TCC--TATGT-ATC-TGA--TTCCACCTC---T-----GGTATATCAAGCTTTTAAGG-GGTCCG-TGTT-TTGC-CC-A-A-CTTT-T-GT------TA-TCT--GTTTGGGG-ACCA---ATGAG--CC-GG-T-CACTG-TCACATTTTAAT-CTTTG---C-CTT----------ataaagacgtttctaattttttgtaaa
gi|11 : ttta---T-TTT----------GTTATCTGTTTG-GGGACCAATGAG-CCGGTCACTGTCACATTTTAATCTTTGCCTTTTCATA---ACTAAATTTTttcataactaaattttacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|12 : tttaatggttgttataacgtggtcattcaccagtacaaccgccattgggtcaaggcttgtctaaacgtattcgtaggaatttcaagccgttcttatacaccgatttcgactacggattaatccatttatctaccaaaaaacaatgggatccggcagatttgacaggttaaaagggtatgcttactctcctatgtatctgattccacctctggtatatcaagcttttaaggggtccgtgttttgcccaacTGAATC-GA-GACATGT-TT-A-CTTA--AG--AC--AAGTTTGTT--G----T--G--C-A-----G----G--GT-TT-TCAA-acctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|13 : atgtttatattcttgtgacgcagaattaattcagaagcttctacatgagataactcgacaattagatacatgtactaacgaactagaaatagaggacaccacagaggtctttccatgtctcgttccgtactgatatttttatagaacattgacattacgccaaacctaacttactcaactttataacaaacgggacggatttcagcttctccatgtcaactccccaatatttatgtagcaagtatccatcatcacatgtataatgggtgtgtatgtctctcaacttattcgatacgcaagcaagcttgttctgctatgatcaggttttA-A--TTATAT--------GGTC----GTTA--TAA-C--GAT---T--T-A-GTTTGCA-AAT-ACA-----AC-TTAC-GATTTGGTC-AAATG---------------------TTT-CACA-CTAA-TT-CTT--A-AG--C-TTTTC-TT--T-AA-ACAT-TG--A---TTTTTACTA-CG-AA-TTACTT-C--ATATACTGTAC-CTGATC--ACA-AT--A-------AA-GGGC-CCGT--GGAGGGT--GT---G-A-C-CG-G--TT---AAC--AG-GGTATGAT---TGCTCC-TCC--TGGGC-ACC-CGA--TCCCACCTC----------------------------A-GACTCG-TG-T-TTGC-CC-A-A-CCCT-T-TA-ATTTGTATTCC--GAAT-AAG-ATTT---ATGAGA-CC-GG-T--ACTG-AT-CGTT---AC-CTT
gi|13 : taggctgtttaag-CTTTA---A-TTT----------GTATTCCGAATA-AG-ATTTATGAGACCGGT-ACTGAT-CGTT---ACCTTCACCTATTCATC---T-TGCAcacctattcatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|14 : taggctgtttaagaattatatggtcgttataacgatttagtttgcaaatacaacttacgatttggtcaaatgtttcacactaattcttaagcttttctttaaacattgatttttactacgaattacttcatatactgtacctgatcacaataaagggcccgtggagggtgtgaccggttaacagggtatgattgctcctcctgggcacccgatcccacctcagactcgtgtttgcccaaccAATC-GA-GGCA-GG-CT-A-CCGA-CAA--AC--AA----GTTC-A----T--G--T-TACAG-G----G--G--TT-CCAA-C--CG-TCT-CGTTTGAAGTCGG-CATTT-C-A-CAG-----TCTATAGATGCATGGTC----GTTA--TAA-CG-A-----TC-T-A-GAGTGCC-A-----------AC-CTGT-CGTTGGGTC-AAATGA-T-G-TTC-G-ACATG----TAT-CATA-CTAA-TT-GTT--A-GGT-C-GTT-C-TT--T-AT-ACAC------------TGCCTA-CA-GA-TTATTC-G--AT----T-T-C-CTTATC--AAA-ATTTA-------A---GGC-TAAC--TGCGGGT--GT---A-A-C-CG-G--TCTTGAAC--AG-GGGAT-TT---TAC-----CC--AAGGT-ACT-TGA--TCCCATCTC---T-----GGTATATC---C-----AGA-GGTCCG-TG-T-TTGA-CC-A-T-CTAT-T-CC-TTATCTATTcaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|14 : agcctgttctatgcacggccagtttttt-----AC-CTGC-TATTGGGTC-AAATtgacccaatagcaggttg
gi|15 : agcctgttctatgcacggccagttttttaatcgaggcaggctaccgacaaacaagttcatgttacaggggttccaaccgtctcgtttgaagtcggcatttcacagtctatagatgcatggtcgttataacgatctagagtgccaacctgtcgttgggtcaaatgatgttcgacatgtatcatactaattgttaggtcgttctttatacactgcctacagattattcgatttccttatcaaaatttaaggctaactgcgggtgtaaccggtcttgaacaggggattttacccaaggtacttgatcccatctctggtatatccagaggtccgtgtttgaccatctattccttatct-A--TTCTAT--------GGTC----GTTA--TAA-C--AA----T--T-AAGCTTACC-AAT-ATG-----AC-CTAT-CATTGAGTC-AAATGC-T-G-TCT-G-ATATG----TTT-CATA-GCAA-AT-GTA--A-AG--CCGT--T-TT--TCAC-ACAC-TG--A---TTT-GACTA-CG-GA-CTGTTC-C--GT----T--AC-CTGATC--AAG-AC--T-------AT-GAGC-TCAC--GGCGGGT--GT---G-A-C-CG-G--TC---AAC--AG-GGGATGCT---TCTCCC-TCC--TAGGCCACC-TGG--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-A-TTGC-CC-A-A-CTCT-T-GT-TTTTGTATTCT--ATTT-AGG-ACTT---ACGAAA-TT-GA-T-CACTGTTT-CGTT---AT-CTTTG---C-TTT----------ACA---TGTTTtg
gi|17 : TGTATC-GA-G-CA-GG-CT-AACTTA-CAAGGAC--AC----GTT--CC---T--G--T-TTGCAGG----G--G--TT-TCAAAC--AG-TCA-CATT-AAAGACAGGCATTTTC-G-TAA-AAATTATAT--------GGTC----TGTA--TAG-C--GAT---T--T-A-GTTTACC-CATGATG-----AC--TCC-CATCGAGTC-AAATGC-T-A-TCT-GAATGTG----TTT-CATA-GCAA-TT-GTT--A-AGC-C-GT--T-TTCCC-AT-ACACTTG--A----TTTGACAA-CA-GA-tgtcagaaccactctgattgcccacacaagtac
gi|18 : gtcaaacttctctatatttaatgtcgcaatagtttcaccatcaaacctgctgtggtgtgtatgtctctcaacgttattcaatacaaaaattgttctgccgtatgatcagatttAATC-AC-AGCA-GG-CT-G-CTGT-CAA--TC--AT----TTT--GA---T--GCTT-C-----A----G--GAGTT-TCAA-C--AT-TGC-CGTTTAAAGTCAG-TAGTT-T-G-CAA-A--TTCTGT--------GGTT----GTTA--TA--TTGA-----T--TTA-GTTTGCC-AGT-GCA-----AC-CTGC-CATTGAGTC-AAATAC-A-G-TTT-G-GCATG----TTT-AATA-CCGATTT-CCT--A-GGT-C-AT--T-TTG-T-AA-ACAC-TG--A---TTTCGACTA-AG-AA-TTA--A-A--GT----T-TAC-CCAATC--AAGTAT--A----------GATC-TCAT--GGCGGAT--
gi|19 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttTGAATC-GA-GGCA-AG-CT-A-CTTA-CAG--AC--AA----GTT--G----TT-G--T-T-----GCAGGG--G--TT-TCAA-C--AG-TCA-CGTTTAAAGGCAG-CATTT-C-G-TAA-A--TACTAT--------GGTC----GTTA--TAACT--AT----T--T-A-GTTTACC-AAT-ATG-----AC-CTAC-CATTGAGTC-AAATGC-T-G-TCT-G-ATGTG----TTT-CATAGCCAT-TT-GTTGGA-GGTCC-GT--G-TTGCC-CT-ACACTCG--A---TTTT
gi|2 : atatttatgtagcaatattccatcatcaactgcatatggtgtgtatacatgtctcttaacttattcgatacgcaagagcttgttctgcgtatgatcagatttTGAATCCGA-GACA-AG-CT-A-CTTATCAG--ACGAAA----GTTTCG-------G--T-T-----GCAGAG--G--TTATCAA-A--GGGTCA-CGGT-AAAGCCAG--ATTT-CCG-TAA-----TCTAT--------GGTCCTATATTA--TAA-C--AAT---T--T-A-GTTGACTTATT-ATG-----AC-CTAC-AATTGA-TC-AAATGC-T-G-T-T-G-A--TG----GTT-CATA-ACCA-TT-GTT--A-AG--C-CT--T-TT--C-AC--CAA-TGTGA---CTTTGACTA-CG--A-TT--TC-C--GT----G--AC-CTGATCTAAGG-AC--T-------AT-GG-C-T-AC--GG-GGGTAGGT---GTA-C-AG-GGGTC---AAC--CA-GGTCTGCT---TAC-----CC--TAGGC-ACC-TGA--CCCCACTCG---TAACAGGATG-GTC---C-----AGGTGTTCCG-TA-A-TGAC-TC-A-A-TTCT-T-G---TTTGTATTAT--ATTT-AGG-AC-T---GC-AGACTT-GA-TCCACTG-TT-C-TTAA-AT-C-TTG-----CCT----------ACATTCTGCT
gi|20 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttcttAATC-GA-AACA-GG-CT-A-CTTA-CAA--AA--AA----GTT--A----T--T--T-TTGCAGG----G--A--TT-TCAA-C--AG-TCG-AATTTAAAGGCAG-CATGT-C-G-TAA-A--TTCTTT--------GGTC----GTTG--TA-----A-----C--G-A-TTTTGCcatattggatatactttaggaa
gi|21 : actacgatctttatagatgaaatattaacgggacgatttgagcttctccatcgtcaacttcccatatttatgtagcaaatgtagcaatattatattccatcatcacctgcatattatgttgtgtaggtctctcaacttattcgatacgcagagcttgttctgcgtatgatcagtttttt-----AC-CTGC-CATTGGGTC-AAATAA-T-G-TCT-G-ACGTG----TTT-CTTG-GCTA-TT-CTT--AAGG--T-GTT-C-TT--T-GT-ACAC-AT--A---TTTTGACGA-CG-GA-TTACTC-C--GT----T-TAC-CTGATC--AGG-AC--T-------AT-GGGC-TCAC--AACAGGT--AT---G-A-C-CG-G--TC---TAC--AG-GGGATGCT---TACTCC-TCT--TAGGC-ACC-CGA--TCTCCCCTC---T-----GGTGAGTC---C-----AGG-GGTCAT-TG-T-TTGA-CC-A-A-CTC--------TTTGTTTTCT------------CTT---ACGAGA-TT-GA-T-CACTA-TT-CGTT---AT-ttagaattat
gi|22 : cccaaacaT--T-AT-ATAT-AG--A---TTT-GTCAA-AG-GA-TTACCC-CC-GT----TCTAA-CTGATC--AA--AC--A-------ATAGGGC-TTATTTGAAGGGT--GT---G-A-C-CGCG--TC---AGC--AG-GGGG-GTT---AATTAC-TCCAATAAGT-ACC-TTACCTCCCA-------T-----GATACAAT---C-----AGG-GGTACG-TG-G-TCTC-CG-ATA-TACT-T-AA-TCTGTTGTTC---GT----GA-ACTT---ACAAGA-AT-GA-T-CTCTG-TT-CATT---AT-TTTTG---CATTT----------TCATTCTtgtcgccttttca
gi|22 : aaggtattcttatttaTGTTCGTGA-ACTTACAAGAATGATCTCTGTT-CATT---ATTTTTGCATTTTCATT---C-TACATCTTTCAATCATTAATTGT--CATacatctttcaatcattaattgtcatattaca
gi|26 : aaggtattcttatttattatatatagatttgtcaaaggattacccccgttctaactgatcaaacaatagggcttatttgaagggtgtgaccgcgtcagcaggggggttaattactccaataagtaccttacctcccatgatacaatcaggggtacgtggtctccgatatacttaatctgt-----G----G--G--TC-TCAA-C--AG-TCT-CGTTTGAAGTCCG-TATTT-T-G-CAA-A--TTCTAT--------GGTC----GTTACTTA--T--AACGATC--T-A-GTTTGCC-AAT-ATGTACAAAT-TTGG-CGTTGGGTC-AAATGC-T-A-TCT-A-ACGTG----TTT-CATA-CCAA-TT-GGT--A-GGT-C-GTG-C-TT--T-AT-ACAT-TG--A---TTCTGACCA-TG-GA-TGACTT-C--GT----T-TAC-C--------------------------AGGC-TCAC--GGCGGAT--GT---G-A-T-CT-A--TT---GAC--TA-GGGGTGTT---TACTCC-TCC--TAAGC-Aattaca
gi|27 : acagTTCAAAATCAG-CATTT-T-A-CAA-A--TTCTAT--------GGTA----GTTA--TA--T--AGCGATC--T-A-GTCTGCC-AGT-A-G-----AA-CTGC-TAT-GGGTC-AAATG------TAT-G-ACATG----TTT-CATT-CCAA-TTCGTT--A-------------TT--T-AC-ACAC------------TGATTATCG-AG-TT--------GT-------------------AG----------------GGGC-TCAC--GGCGGAT--AT---G-A-C-CG-G--TT---GAC--AG-GGAATTCA---TACTCT-TCC--AATGC-ACC-TGA--TCCCACCTC---A-----GG-GTGTC---C-----GGG-GGTCCG-TG-T-TTAC-C
gi|28 : AATTGGCAATTGTAGAAATTGCTTTACTGAAGTAATAGTGTTACATTTCTAAAATATGCGAAACTGCATT-ATGTAAAGG------CAA-------ATACAACGATCAGTGATCAA-TCTC-GTAAGTCCCAA-AT-AGAA---TAC-AAAAC-AAG-AGTTGGGCAA--ACACGGACCCCTGGACA
gi|29 : taaataataaatcaatcaggagggtatatttgaataaGC-TCAC--GGCGGAT--GT---G-A-T-CT-A--TT---GAC--TA-GGGATGTT---TACTCC-TCC--TAAGC-ACC-TGA--TTACGCCGC---T-----GGTATATC---C-----AGG-GACCAG-TT-T-TTTT-CCAA-A-TTCT-T-A--ATTTGTATTCC--ATAT-GTG-AGTT---ATAATA-TT-GA-T-CACTG-CT-CGTT---AT-CTTCG---t
gi|3 : TGCACC-AA-GGGA-GG-TT-A-CTTA-CAA--AC--AA----G-------------------------------G--TT-TCAA-C--AG-TCG-CGTCTAACGTCAG-CATTT-T-G-CAA-A--TTTTAT--------GGTC----G--A--TA--------------T-A-GTTTGCG-GGA-ATG-----GC-CTAC-CATTGGGTC-AAATGT-T-G-TCT-G-ACGTG----TTT-TATA-TCA----------------------C-TT--C-AT-ACAC-AG--A---TTTTGACTA-CG-TA-TTACTC-C--GT----T-TAC-CTGATC--AAT-AC--A-------AT-GGGA-TCAC--GGCGGGT--GT---G-A-A-AG-G--GC---AAC--AG-GGGATGTT---TACTCC-TCC--TAGGC-ACC-TGA--TCCCACCTC---T-----GGTTTGTC---C-----AGG-GATCCG-TG-T-TTGC-CC-A-A-CTCT-T-GT-TTTTGTATTCT--ATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG---T-TTT----------GTATTCTGTTTG-GG-ACTTACGAGCTTGATCGATGTT-CGTT---ATCCTCGCATTTTCATCCATA-TACATATTTGCATT-TTGAATGT--TATTATGTACAAATAACAAATCTATAAAGGTTAT-TA-ATCATAACACTGTGTAGACATAAT----AATGGT--CAAT--A--TA--AAAG------------AATTATAAA--ACCCAAA--TACATTTGTGTAAAGG------CAA-------ATACA-------GTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AGTTGGGCAA--ACACGGATCCCTGGACAAA-CCAGAGGTGGGATCC-GGTGCCTAGGAGGAATAAGCATCCCCTGTTGACCGG-TCACACCCG---CCGTGA-GCCCATAGTCTTG--ATCA-GGTAAACGGAACAAT-CCGTAGTCAAATCA---GTGTGTGAATAACGGCCT--ATAATG--AAATGTTATTGCAGATGCCAGatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|30 : a-TAAATATTTTTATT-CGGAGTGTGACATTATGTTTGAA---------GATAAA-GTCATGTACGTC-T-ACA---TGCACATGTAATT--CAATTGTGCCAAT--CTTTA--AAAGT----------CAGTTTTA--------AAA--TACATTTATGTAAAGGTAAAGATAA------CGAACA-------GTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AGTTtatgcttgtataaaaagtctatataatgaaattataaatgtgaaaatatgtcattgatacatgttt
gi|32 : AAGC-ACC-TAA--TCCCACCTC---T-----GGTGTATC---C-----AGG-AGTCCA-TG--------------------------TTTGTATTCC--GTCT-AGG-ACTTGAAACGTAT-TT-GA-TGCATTG-aat
gi|32 : --TAAGC-ACC-TAA--TCC-ACCTC---T-----GGTGTATC---C-----AGG-AGTCC--------------------------AT-TTTTGTATTCC--GTCT-AGG-ACTT-----GAAA-AT-GA-aaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|34 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagatt----TTT-CATA-CGAA-TT-GTTGGA-GG--C-TT--C-TT--T-AT-AC
gi|35 : tatctagtcagattttttgtcaagaattctataggtaatgaaataaaggtctatcatttgcaaaacacaagctttcaactggccgtccccgaaatgtagctggtgatcgaa-TCC--TAA---ACT-TG---TCTCACATCATTT-----GGTATACC---A-----AGG-AGTCTG-TG-T-TTGC-TC-A-A-CTCT-T-GT-TTATGTATCCT--GTTT-TGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG---C-TTT----------
gi|37 : tgatgaaTTGACTA-CGTGA-TTGTTCTC--TT----T-TACAGTGACC--CAT-AG--AGCGCTATAT-GGGCATC-C--GGC-AGT--GT---G-A-CGCA-G--CA---AACTAAA-GGGATGCTTTATACTCC--CC--TAGAC-ACCACAA--TCCCACCcaactacgcggg
gi|38 : A-TT-GTT--C-GT--T-AT--T-TT--T-GT-GTTC-TG-------TTTGACTA-CG-GA-TTGTTC-CTTGT----T-AAC-TTGACT--AAT-AT--G-------AG-GGAC-T-----GGAGTGTTAGTGAAG-A-C-CA-G-------AAC--AACGAGA-GCT---AATTCA-T-C--TAGGA-ACA-GGA--TCCCctcctcggttg
gi|4 : AATC-AA-GACA-GG-CT-A-CTGA-CGA--AC--AA----GTT--G-------G--T---------------G--CT-ACAA-GGGAG-TCA------ATAGTCAG-CATTT-C-G-CAA-A--TTCTAT--------GGTC----GATA--TAA-CG-A-----T--CCA-GTTTGCC-AGT-ATA-----AC-ATGC-CAGTGGATC-AAATGC-C-G-TTT-G-ACAAGACAGTTT-CATA-CCAA-TT-GCT--A-GG--CCGTT-C-TT--T-AT-ACAC-AG--A---TTTTCACTA-C-----------------------TAC-CTGATA--AAG-TT--T-------AA-GGAT-TCAC--AGTGGAT--GT---G-A-C-CG-G--CG---GAC--AG-GGGATGCT---TACTCC-TGC--TATGT-ATC-TTA--TCTCACCTC---T-----GGTATATT---C-----AGA-GAGCTA-TG-T-TAGC-CC-A-A-CTCT-A-A---TTTGTATTCC--GTAT-AGA-AATT-----GAGA-TC-GA-T-CACTG-TT-CGTT---AT-CTTCA---T-CTTTATAGTGCGAGTATTCT------GG-ACGTACGgaa
gi|42 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaA--TCATGCCTC---T-----GGTATATT---A-----AGG-GGACTG-TG-T-TTGC-CC-A-T-CTCT-T-A--TATTATATTC
gi|44 : cttacTC---C-----CGG-GATCCT-TG-T-TTGA-C----A-TTCTCT-ACATTTTGTATTCTCAA----AGG-AATT---ACAAGA-TT-GA-T-CACTcgtatcaatcggagcgtcac
gi|47 : -T-GT-TTTTGTATTCT--ATGT-AGG-CCTG---ACAAGA-TT-GA-T-CACTA-TT-CGTT---AT-ATTTG---C-CTT----------aaaac
gi|48 : tgtaGTTTC---C-----AGG-GATCAA-TG-T-TTGCGTC-A-ATCTCT-T-AT-TTTTATATT-G--ATTT-AGG-GACT---ACGA
gi|49 : taC-TG---TCCCACCTC---T-----GGTATGTC---C-----A-G-AGTCTG-TG-T-TTGC-CG-T-A-TTCT-C--T-ATTTATAT
gi|5 : cgTAAATC-GA-GACA-GG-CT-A-CTTA-CAA--AC--AA----GCT--GA---T--G--T-T-----GCAGAG--G--TT-TCAA-G--AG-ACA-CTTTTCAAATCAG-CTTTT-C-G-TAA-A--TTCTAT--------GGTC----GTTA--TA--T--AACGATC--T-A-ATTTGCA-AAT-ACA-----GC-CTTT-CATTGGGTC-AAATGT-T-G-TCT-G-ACGTG----TTT-CATA-CCAA-TT-GTT--A-GGC-C-GT--TATT--T-AT-ACA
gi|51 : cacatttctttgattgattttatgaaacactgatctctaaacagtcggaattcccatgggcatgaattgtgctactttgttagctgacctgttcttatattcttacaaggcaaattttattcaaaagtttctacatgagaagaaaaaatctttagctgtggtttttaattcgatagttggatatatcgatatcgttttatctattgatagctattattttcatttatatgtcgattcgttatatcccattgaacaacagacaccacagagtcatcgtacttggatattttactgaacgcagacactatcggcaaactaacaactcaaactttatgacaaacgggacgatttcagcttctccactgtcaacttcccatatgtacaaatgtatgtagcaacatcccatcagcacttgtatatggtgtttattcgatatgaaagagcttgttctgtgaataatcagttttT--T-AT-ACGC-TG--A---TTTTGACTA-CA-TA-TTACTC-C--GT----T-CAG-CTAATC--t
gi|52 : TTAAGAGATTGATCACTGTT-CATT---ATCTTCACTTTTT
gi|53 : GG-AATT---ATGAGA-TT-GA-T-CACTG-TT-CGTT---AT-C
gi|54 : CCGG-TCACACTCG---CCGTGA-GCTCATAGTC
gi|6 : TGAATC-GA-GGCA-GC-CT-A-CTTA-CAA--AC--AA----GTT--G----TT-G--T-T-----GCA--GATG--CT-TCAT-A--AG-TCA-CGTTTAAGGGCAG-CAATT-C-G-CAA-G--TTCTAT--------GGTC----GTTA--TAA-C--GAT---T--T-A-GTTTGCC-AGT-ATG-----GC-CTGC-CATTGGGTC-AAATGC-T-G-TCT-G-ATGCG----TT
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagttttT--GT---G-A-C-CG-G--TC---AAC--AG-GGGATACA---TACTCC-T-----AGAC-ACC-TGA--TCCCACCTC---T-----GGTGTGCC---C-----AGG-GGTCCG-TG-T-TTGC-CG-A-A-CTCT-TGGT-TTTTGTATTCT--AATT-GGG-ACTT---ATGAGA-TT-GA-T-GACTG-TT-CGTT---GT-CTTTA---C-ATT----------GTGATCTgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaactcttggtttttgtattctaattgggacttatgagattgatgactgttcgttgtctttacattgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgtT-CTTGG---T-TTTT---------GTATTCTAATTG-GG-ACTTATGAGATTGATGACTGTT-CGTT---GTCTTTACATTGTGATC---T-T---TCTTTGTA---CTAAGTTT--AATTAttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|8 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgttgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaacTGATTC-GA-GGCA-AGACT-A-CTTA-CAA--AC--AA----CTT--G----TC-G--C-A-----G----G--GATTT-TGAA-A--AG-TTA-CGTTTAAAGGCAT-TATTT-C-G-CAA-G--TTCTAT--------GGTC----GTTA--TAA-CG-A-----TC-T-A-CTATGCC-CAT-ACA-----AA-CTGC-CAATGAGTC-AAATGC-T-G-TCT-G-ACATG----TTT-CATA-GCAA-TT-ATT--A-AG--CTGT--T-TT--TCAT-ACAC-TG--AATTTTTTGACTG-CA-TA-TTATTC-C--AT----T-TAC-TTGATC--AAG-AC--A-------AT-GGGC-TCAA--GGCGGGT--GT---G-A-C-CT-C--TC---GAC--AG-GGTATGCT---TACGCC-TTT--TAGGC-ACC-TGA--TCCCAACTC---T-----GGTATGCC---C-----AGG-GGTCTG-TG-T-TTGT-CT-A-A-CTCT-T-G--TTTTGTATTCT--ATGA-AGG-ACTT---ACGAAA-TT-GA-T-CACTG-TT-CATT---AT-GTTTGCCCT-TTC----------ATACTCTGaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|9 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagatttTAAATC-GAAGGCA-AG--T-A-CTTA-CAG--AC--AA----GTT--GTTGCT--G--TAG-----G----G--G--TT-TCAT-T--TG-CCATTGTTTAAatgccatagaagtacat
gi|9 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgtttGTAAAGG------CAAAAGATACGAACA-------GTG-TCAAATCTCCGTAAGTCGAAACATGAGAACCATACAAAAACTAAGTAGTTGGAAAGTGACACGGACCCCTGGACACAACCAGAGGTGGGATCAAGGTACCTAGAGGGAGTAAGCTTCTCCTGTT-ACCGGTTCACACCCGGTCCCGTGAGGCACATAGTCTTGAAATCAGGGTAAACGGGACAATCCCGTAGTCAAATCATGGGTGTGAAAAAAACGGCTTAAACAATGGCAAATGgccgtttttttcacacccatgatttgactacgggattgtcccgtttaccctgatttcaagactatgtgcctcacgggaccgggtgtgaaccggtaacaggagaagcttactccctctaggtaccttgatcccacctctggttgtgtccaggggtccgtgtcactttccaactacttagtttttgtatggttctcatgtttcgacttacggagatttgacactgttcgtatcttttgcctttactagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
16 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TCTTTCAAACGACGAAATTCTACAAAATCACGCTTCAGCTTTAATCACATTTAATATCCCAGTCAATGGGACGGACGAATATGAATTATCGTACCTATGCTGGATTCATAAAAAAACCCTTACAAAGATACATTGCTGAGTCTAGTAAATGTTCCACCAAACCCCTGTCGTTACTCTTCACGAAAATATTGACTGCTGTCAAGGATCAACCTTCAGACGTATTGTGAAAGTACATATGCCAGAAGTGGTAATGTGGATTCTAAAAGATTCTTCTAAACAATTCTAGTGAATTTGAAATCCCAGAACCTTTCTCATATCAACAACATCGAATCATGTGATTTTTCAAAAAATTCATAACCATTCCGCACGATGAATTATAGGTAAGACTTTGTAAAGTTACAAACGATTGCTTCTTTAACAAAAATGGAAAGGAAATATTCATATCTAATGATCAGCCATTCACAAAATTACTCTGATTCTAAACACAAGTACTCCGAAGTTGATATCAAAGCAATGCTGGAGTTCCTCATTGACAATATCTTTGTAGTTTTTGGCAATCAGGTCTTCCAACATTCTGTTGTAATTCCAATTGTCACGAATTGTGTTCCTTTGTTAGCGGACCTATTTTTATATTCTAATGAGGCAGAATGCATTCAAAAGCTTCTACATGAAAAGAAGAAATCTGTAGCGGGGACCTTTAATTCGACATATTGACGAGGTTTAGTATTAATGGTTTTCATGCATATGTCGATTTAATCGAAACGAACTAGAAATAAAGGACACCACATAATAACCCATGCCTGCTTCAAACTTGGATATTTTATTGAACATTGACATTAACGGCAAACTATCTACTTAACGTTATGACAAATGGGACGATTTTA
Unaligned ( gi|7 ): ATTAAAAAGAACTTTATACCTTGTCAGAATGGATAAAAAGTATAAGAAGAATATTAAAATCCCGTATTACACAAATGAAAACAAAAGTGTGTATCACCTAGCCTTCTGTGTTTCGAAAACCAGAAGTGATCAAAGAATTAGATAGGATACATGAGAAATATGTTTTGGTTCCAGCTGGCAAAGTCTGTAACAACATTGTCTTCGTCTGTAAGGCTCATTATTACAACTGTATTTTGAACGAACTTGGTATTAACTCAACATTTGGTAATCGTACTTACACTCCAACTGCTCTTTCAAAAGAGGAAAATCTTCAAAATCGTGTTTCAGTTTTATACACTTTTAATATCCTAATCAATGGGACGGATGTTACCGTACCTATACTGGATTCCAAAACTTTGCAAAAAAAAAAACCCAAAAACAAAAACAAAAAAAAACCTAGCAAAGACACATTGCTGGATCAAGTAAATGTTCCATCAAGCCCCTGTCTTTACTCCTCACGAAAATTATTTACACTTGTGAAGGAGCATTGCTTTAGACGTATTGTTCAACAGCATATATGCAAGAAGTGGGGTAAATCAAATTTGGATTC
Unaligned ( gi|16 ): GATATATCAAAAAACTCTACACTTTAACCCACCATTTCGCACGATAAATTGGAAAAGACAACGACTTACGAGAAGTTTGTTTCGTTAACAATAAATGGAAAAGGGAATATTCTTATCTAGCGATCTGTCATTTCAAAAAATTATTCTGTTAAAACTCGCACTTCACATTCTACCCATCACAAGTACTGTATACTCTGAAGTTGAATATTTAAGCAATGCTGGCTTCCTCACTTTGTGAATGCGAGAAAATATCAATTTGCAATGTTCCTGTGAACCACAAGTTGTTCACCAATTCTCCATTTTCTGTATTCCATTTTTGATTGGACGTTCTCATTTTCTTA
Unaligned ( gi|23 ): CTTCCACATCTGCCTTTCTTATTTAGTGTTATAGTTGATCATAAATGTTAATCGGCAAACACGGTCCAAATTTCTAACCTTTCTAACAAATGGGATAATTTCTAAATTCTCTATAGTCAATCTTCCCAGCATTTTATTTTGCTGCTACTCGGTGTTTTTCTCACAACTGGATTCAAAGTAGCAAGAGTTTCAACGTATTACATTTTTAAAAATAAAAAAAATCGAGGACAGGCTAATGACAAAGCAATTAATGTTAC
Unaligned ( gi|24 ): ATTTTATATTGACAAAGGGATCCCCACTCTTAAAAATATTGGACAGCACTACCCTTGCAATATGCACTCTCTATCAAGTCTGTGTCTTTCTTGTACCCAAGTTTTCATCTCAAATATTCCTTCTCCAATAGAGGTACAATGATAATTAGGCAGGAGTTGCAGAGGAACAGAATGTCGAAAGGACAGACAGACAGACACAGCGCTGTTATGTCATGATACGCTCGCTTTTTATGTCGGGCATATAAAAAGT
Unaligned ( gi|25 ): AAAACAAAAAATGCATATTATCTACCAACTATGTTTAACCAACAAGAAGCGTATGAACCGAATTAGATAGGGAGTTTGAGGAATAAAAATATAGGCTCCAAGATGATAAAAGCTTGTACATATTGTCTTTTGTTTCTAAGGCTCATTAAAACAATAATTTTACAGGGAATTTGGATTTACGCCAACTTTAGTAATTCCAGTTTTACTTAAACTAAGTTCCTTCTCCAAAAGATGAAAAT
Unaligned ( gi|31 ): TTGGATGCTATATGAATACTCTGATACAATGGCGCAAGCTAGCAACCACTGTAATGACAAACATGGACATTTCATCTTCTCCAGCGTCAAGCTACCCATACTTATGAAATATTTATGAAACAAATCCATTATTAATTTGCATATGATATCTTATTCGATACGCAAGACGTGTCC
Unaligned ( gi|33 ): TGTTCCTTTTGGTTGCTGACCTGTTTTCGTATTCTTACGAGGCAGAATTTATTCAAAAGCTTCTTCAAGAGAAGAAAAAAATTTCTAACTGTGGCCTTTAACTCGACAGTCAGATATATTGATGACGTTTTATCTACTGAATATAATTATTTGCTTTTAT
Unaligned ( gi|36 ): CCTGTACGAGTATGGGATATTCTAAATGTTAAAAAAGCAGATGTTCTTTTCACTCTTTACTACAATTTATGGATACCAAGGTTACATTATAGTTCCAGATGTGACCAAAAAACTATCATGGCGACGATTGTT
Unaligned ( gi|39 ): AATGTTAAAATAAAGCAGATGTTCTTTTCACTCTTTACTACATTTATGATACAGGTTACAGTTATAGTTCCAGATGTGAACCAAAACTATCATGGCGACGATT
Unaligned ( gi|40 ): CCTTTTTGTCGTAATCTGATGAGGTAGAATTGAATCAAAAGCTTTACACCAGAAGCAGAAAATATCTTATCTTCGCCTTCATACATCGAC
Unaligned ( gi|41 ): AGGAGGAGTTGCAAAGACAAAGTGAAACAGACAGACAACAGCAGTATATAGCATAATACACCAGCATTTTTATACGGGCGTATAAAATTT
Unaligned ( gi|43 ): TTCTTACGAGGCAGAATTTTCTTAATTAAAAAAGTCTTCTACAGAAGAGGAAGAGAGAAATCTAGCTATATGCTTTT
Unaligned ( gi|45 ): AAACACTCTGATTCCAAACAGATATTCAGAGTAAAGCTGATATCAAACAGATTTTGGAGTTCTTCATT
Unaligned ( gi|46 ): AAATTCTGTCTGGTGTATTATAGTGGATTGTTAGCCGTGTTTTCATAATTGATTTGACAATGGATT
Unaligned ( gi|50 ): TCGTACCTATACTTCATAAAAACTCTTACAAAGATACATTTCCAAG
Alignments
lowQualScore : 777777777777777777777 1111 222 22222222222 1111111111 11111 111 1 2222 111 111 11 22222222 1111 222 66666666666666666666666666666 6666666666 6666666666666666 1 111 1 11 2 11 222 11 1 1 1 111 1 1 11 111 1 22 1 1 222 11 11
lowQualScore : 2 2 2 2 2 2 2 33 33 555555555555555555555 33 77 2 6666 2 2 0 1 2 2 2 2 4444 88888888 5555 5555 66 0000 111 2 2 2 2 6666666 2 2 2 22 2 2 2 2 4444 2 44 2 2 2 55 3333 33333333333 7777 1 444 22 4444 2 1 2 33 88 9999999 66 0000000000 33 66 444 2 2 2 33 5555 2 2 33 2 22 333 55555 0 333 55555 2 2 222 22 2 2 99999 77777 2 2 333 2 2 2 4 2 2 777 2 2 111 66 4 666 0 6 4 0 1 4444 55 1 22 444 0 444 1 9999 1 88 6 0 33333333 7 6666 111 999 99999999999999999999999999999 1 1 5555555555 7 4444444444444444 1 3 0 8 8 8 444 0 8 8 8 0 33 0 77 6 333 1 88 5 0 0 2 777 3 0 0 1 33 777 3 77 5 3 0 6 000 1 1 88 77
lowQualScore : . . . . . . . .. .. ..................... .. .. . .... . . . . . . . . .... ........ .... .... .. .... ... . . . . ....... . . . .. . . . . .... . .. . . . .. .... ........... .... . ... .. .... . . . .. .. ....... .. .......... .. .. ... . . . .. .... . . .. . .. ... ..... . ... ..... . . ... .. . . ..... ..... . . ... . . . . . . ... . . ... .. . ... . . . . . .... .. . .. ... . ... . .... . .. . . ........ . .... ... ... ............................. . . .......... . ................ . . . . . . ... . . . . . .. . .. . ... . .. . . . . ... . . . . .. ... . .. . . . . ... . . .. ..
lowQualScore : 9 9 9 9 9 9 9 99 99 777777777777777777777 77 33 7 7777 9 9 1 0 9 9 9 9 9999 55555555 0000 0000 55 0000 555 4 5 7 4 2222222 2 2 1 33 2 2 2 2 5555 2 22 1 1 1 88 2222 33333333333 4444 9 111 99 4444 2 0 2 99 44 5555555 99 5555555555 44 55 444 5 5 5 44 9999 5 4 11 1 88 777 33333 2 555 00000 0 0 555 22 1 0 44444 55555 4 2 777 1 1 1 4 4 5 888 4 5 000 66 0 444 0 0 7 7 0 3333 88 0 22 000 2 000 0 0000 0 33 7 7 00000000 3 7777 333 333 77777777777777777777777777777 0 0 3333333333 3 8888888888888888 0 2 0 0 0 0 000 8 0 0 0 0 88 5 00 7 333 0 33 0 0 0 5 555 2 0 0 0 88 555 3 77 0 3 7 7 555 0 0 55 55
consensus : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--AC-G--AT-T-A-GTTTGCC-AGT-ACG-----AC-CTGC-CATTGGGTC-AAATGC-T-G-TCT-G-ACGTG----TTT-CATA-CCA-A-TT-GTT--A-G--G--C-G-T--T-TT--T-AT-ACAC-T-G--A---TTTTGACTA-CGGA-TTACTCC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCT--GTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT-GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT-C-AATCTTTA--AAAGT----------CANTTNTAAAAC---C-AAA-TACATTTATGTAAAGG------CAAAGG--ACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTGG-GCAA--ACACGGACCCCTGGACACAACCAGAGGTGGGATCG-GGTGCCTAGGGGGAGT---AAGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-G-CCC--ATAG---TCT-TG-GATCA-GGTAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
Reference ( family-7 ) : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--AC-A--AT-T-A-GTTTGCC-AGT-ACG-----AC-CTGC-CATTGGGTC-AAATGC-T-G-TCT-G-ACGTG----TTT-CATA-CCA-A-TT-GTT--A-G--G--C-G-T--C-TT--T-AT-ACAC-T-G--A---TTTTGACTA-CGGA-TTACTCC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCT--ATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG-C---TTT-GTA-TTC---TGTTTG-GGACTTACGAGATCGATCACTGTTCGTTATCTTCGCNTTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCNATAA--AGGTCATGTACGTCATAACACTGTGCANACGTAATTCAATTGTGC-AATCTTTA--AAAGT----------CANTTNTAAAA----CCAAA-TACATTTATGTAAAGG------CAA------CGNACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTGG-GCAA--ACACGGACCCCTGGACANAACCAGAGGTGGGATCNAGGTGCCTAGGGGGAGT---AAGCNTCCCCT--GTTGACCG-GT-CACACCCG---CCGTGA-G-CNC--ATAG---TCT-TGAAATCAGGGTAAACG-GGACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
gi|10 : TGATTC-GA-GGCA-AG-TTGA-CTTA-CAA--AC--AAGTT--G-T--TTATCACAGG----G--G--TT-TCGA-C--AG-TCA-CGTTTAATGGCAG-CATTT-C-GACAAGA--TTCA--------ATGAT------------------------T-T-A-ATTTGCC-CAT-ACA-----ATTCTGTTCATCTGGTCCAAACAC-TTGCTCT-G-ACATG----TTTACATA-GCA-A-TT-GTT--A-G--GA-C-G-T--T-TT--TCATTACAC-T-G--A---TTCTGAGTA-TGGACTTACTCCC-GT----C-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GACGGGT--G----G-ACCCG-G--TC---AACA--GGGATGCTTACTCCTTCC--GAGG-------------CATCTC---T-----GGTGTGTC---C-----AAC-GGTCCGTTG-TATTGCCC-A-AC-CT-T-GG-TTTAGTATTCT--ATTT-TGGCATTT---ACGAGA-TTCGATT-TACGT-TT-CGTT---ATATTTTG-CCT-TTT-TCA-TTT---TG
gi|11 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttt--------ATGGTT----G----TTATA--AC-GTGGT-C-A--TTCACC-AGT-ACA-----AC-C-GC-CATTGGGTC-AAG-GCTT-G-TCTAA-ACGTA-----TT-CGTA-GGA-A-TT-TCA--A-G--C--C-G-T--T-CT--T-AT-ACAC-C-G--A---TTTCGACTA-CGGA-TTAATCC--AT----T-TATCT-ACCAAAAA-A--CAAT-GGGATC-C--GGCAGAT--TT---G-A-CAG-G--TT---AAAAG-GGTATGCTTACT-C-TCC--TATGT-ATCTGA--TTCCACCTC---T-----GGTATATCAAGCTTTTAAGG-GGTCCG-TGTT-TTGCCC-A-ACTTT-T-GT------TA-TCT--GTTTGGGG-ACCA---ATGAG--CC-GG-T-CACTG-TCACATTTTAAT-CTTTG-C---CTT-ataaagacgtttctaattttttgtaaa
gi|12 : tttaTGAATC-GA-GACATGT-TT-A-CTTA--AG--AC--AAGTT----T-GTT-------GTGCAG--GGTTT-TCAA-ttcataactaaattttacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|13 : atgtttatattcttgtgacgcagaattaattcagaagcttctacatgagataactcgacaattagatacatgtactaacgaactagaaatagaggacaccacagaggtctttccatgtctcgttccgtactgatatttttatagaacattgacattacgccaaacctaacttactcaactttataacaaacgggacggatttcagcttctccatgtcaactccccaatatttatgtagcaagtatccatcatcacatgtataatgggtgtgtatgtctctcaacttattcgatacgcaagcaagcttgttctgctatgatcaggttttA-A--TTAT--------ATGGTC----G----TTATA--AC-G--AT-TTA-GTTTGCA-AAT-ACA-----AC-TTAC-GATTTGGTC-AAATG---------------------TTT-CACA-CTA-A-TT-CTT--A-A--G--C-T-TTTC-TT--T-AA-ACAT-T-G--A---TTTTTACTA-CGAA-TTACTTC--ATATACTGTACCTGATC--ACA-A--TAAA-GGGCCCGT--GGAGGGT--GT---G-A-CCG-G--TT---AACAG-GGTATGATTGCTCC-TCC--TGGGC-ACCCGA--TCCCACCTC----------------------------A-GACTCG-TG-T-TTGCCC-A-ACCCT-T-TA-ATTTGTATTCC--GAAT-AAG-ATTT---ATGAGA-CC-GG-T--ACTG-AT-CGTT---AC-CTTCA-C---C----TA-TTC---
gi|14 : taggctgtttaagAATC-GA-GGCA-GG-CT-A-CCGA-CAA--AC--AAGTTC-A-T-GTTACAG---G----G--G--TT-CCAA-C--CG-TCT-CGTTTGAAGTCGG-CATTT-C-A-CAG-----TCTATAGATGCATGGTC----G----TTATA--AC-G--ATCT-A-GAGTGCC-A-----------AC-CTGT-CGTTGGGTC-AAATGA-T-G-TTC-G-ACATG----TAT-CATA-CTA-A-TT-GTT--A-G--GT-C-GTT--C-TT--T-AT-ACAC-------------TGCCTA-CAGA-TTATTCG--AT----T-T-CCTTATC--AAA-ATTTAA---GGCTAAC--TGCGGGT--GT---A-A-CCG-G--TCTTGAACAG-GGGAT-TTTAC-----CC--AAGGT-ACTTGA--TCCCATCTC---T-----GGTATATC---C-----AGA-GGTCCG-TG-T-TTGACC-A-TCTAT-T-CC-TTATCTATTatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|14 : agcctgttctatgcacggccagttttttCA-----AC-CTGC-TATTGGGTC-AAATtgacccaatagcaggttg
gi|15 : agcctgttctatgcacggccagttttttaatcgaggcaggctaccgacaaacaagttcatgttacaggggttccaaccgtctcgtttgaagtcggcatttcacagtctatagatgcatggtcgttataacgatctagagtgccaacctgtcgttgggtcaaatgatgttcgacatgtatcatactaattgttaggtcgttctttatacactgcctacagattattcgatttccttatcaaaatttaaggctaactgcgggtgtaaccggtcttgaacaggggattttacccaaggtacttgatcccatctctggtatatccagaggtccgtgtttgaccatctattccttatct-A--TTCT--------ATGGTC----G----TTATA--AC-A--AT-T-AAGCTTACC-AAT-ATG-----AC-CTAT-CATTGAGTC-AAATGC-T-G-TCT-G-ATATG----TTT-CATA-GCA-A-AT-GTA--A-A--G--CCG-T--T-TT--TCAC-ACAC-T-G--A---TTT-GACTA-CGGA-CTGTTCC--GT----T--ACCTGATC--AAG-A--CTAT-GAGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---AACAG-GGGATGCTTCTCCC-TCC--TAGGCCACCTGG--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-A-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCT--ATTT-AGG-ACTT---ACGAAA-TT-GA-T-CACTGTTT-CGTT---AT-CTTTG-C---TTT-ACA-------TGTTT
gi|17 : TGTATC-GA-G-CA-GG-CT-AACTTA-CAAGGAC--ACGTT--CCT-GTTTGCAG--G----G--G--TT-TCAAAC--AG-TCA-CATT-AAAGACAGGCATTTTC-G-TAA-AAATTAT--------ATGGTC----T----GTATA--GC-G--AT-TTA-GTTTACC-CATGATG-----AC--TCC-CATCGAGTC-AAATGC-T-A-TCT-GAATGTG----TTT-CATA-GCA-A-TT-GTT--A-A--GC-C-G-T--T-TTCCC-AT-ACACTT-G--A----TTTGACAA-CAGA-tgtcagaaccactctgattgcccacacaagtac
gi|18 : gtcaaacttctctatatttaatgtcgcaatagtttcaccatcaaacctgctgtggtgtgtatgtctctcaacgttattcaatacaaaaattgttctgccgtatgatcagatttAATC-AC-AGCA-GG-CT-G-CTGT-CAA--TC--ATTTT--GAT-GCTTCAG---G----A--G--TT-TCAA-C--AT-TGC-CGTTTAAAGTCAG-TAGTT-T-G-CAA-A--TTCT--------GTGGTT----G----TTATA--TT-G--AT-TTA-GTTTGCC-AGT-GCA-----AC-CTGC-CATTGAGTC-AAATAC-A-G-TTT-G-GCATG----TTT-AATA-CCG-ATTT-CCT--A-G--GT-C-A-T--T-TTG-T-AA-ACAC-T-G--A---TTTCGACTA-AGAA-TTA--AA--GT----T-TACCCAATC--AAGTA--TA---GATCTCAT--GGCGGAT--
gi|19 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttTGAATC-GA-GGCA-AG-CT-A-CTTA-CAG--AC--AAGTT--G-TTGTT-------GCAGGG--G--TT-TCAA-C--AG-TCA-CGTTTAAAGGCAG-CATTT-C-G-TAA-A--TACT--------ATGGTC----G----TTATA--ACTA--TT-T-A-GTTTACC-AAT-ATG-----AC-CTAC-CATTGAGTC-AAATGC-T-G-TCT-G-ATGTG----TTT-CATAGCCA-T-TT-GTTGGA-G--GTCC-G-T--G-TTGCC-CT-ACAC-TCG--A---TTTT
gi|2 : atatttatgtagcaatattccatcatcaactgcatatggtgtgtatacatgtctcttaacttattcgatacgcaagagcttgttctgcgtatgatcagatttTGAATCCGA-GACA-AG-CT-A-CTTATCAG--ACGAAAGTTTCG---GTT-------GCAGAG--G--TTATCAA-A--GGGTCA-CGGT-AAAGCCAG--ATTT-CCG-TAA-----TCT--------ATGGTCCTATA----TTATA--AC-A--AT-TTA-GTTGACTTATT-ATG-----AC-CTAC-AATTGA-TC-AAATGC-T-G-T-T-G-A--TG----GTT-CATA-ACC-A-TT-GTT--A-A--G--C-C-T--T-TT--C-AC--CAA-T-GTGA---CTTTGACTA-CG-A-TT--TCC--GT----G--ACCTGATCTAAGG-A--CTAT-GG-CT-AC--GG-GGGTAGGT---GTA-CAG-GGGTC---AACCA-GGTCTGCTTAC-----CC--TAGGC-ACCTGA--CCCCACTCG---TAACAGGATG-GTC---C-----AGGTGTTCCG-TA-A-TGACTC-A-ATTCT-T-G---TTTGTATTAT--ATTT-AGG-AC-T---GC-AGACTT-GA-TCCACTG-TT-C-TTAA-AT-C-TTG-C----CT-ACA-TTC---TGCT
gi|20 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttcttAATC-GA-AACA-GG-CT-A-CTTA-CAA--AA--AAGTT--A-T-TTTTGCAG--G----G--A--TT-TCAA-C--AG-TCG-AATTTAAAGGCAG-CATGT-C-G-TAA-A--TTCT--------TTGGTC----G----TTGTA--AC-G--AT------TTTGCcatattggatatactttaggaa
gi|21 : actacgatctttatagatgaaatattaacgggacgatttgagcttctccatcgtcaacttcccatatttatgtagcaaatgtagcaatattatattccatcatcacctgcatattatgttgtgtaggtctctcaacttattcgatacgcagagcttgttctgcgtatgatcagtttttt-ACA-----AC-CTGC-CATTGGGTC-AAATAA-T-G-TCT-G-ACGTG----TTT-CTTG-GCT-A-TT-CTT--AAG--G--T-G-TT-C-TT--T-GT-ACAC-A-T--A---TTTTGACGA-CGGA-TTACTCC--GT----T-TACCTGATC--AGG-A--CTAT-GGGCTCAC--AACAGGT--AT---G-A-CCG-G--TC---TACAG-GGGATGCTTACTCC-TCT--TAGGC-ACCCGA--TCTCCCCTC---T-----GGTGAGTC---C-----AGG-GGTCAT-TG-T-TTGACC-A-ACTC--------TTTGTTTTCT------------CTT---ACGAGA-TT-GA-T-CACTA-TT-CGTT---AT-TGTCG-C---CTT-ttagaattat
gi|22 : cccaaT--T-AT-ATAT-A-G--A---TTT-GTCAA-AGGA-TTACCCCC-GT----TCTAACTGATC--AA--A--CAATAGGGCTTATTTGAAGGGT--GT---G-A-CCGCG--TC---AGCAG-GGGG-GTTAATTAC-TCCAATAAGT-ACCTTACCTCCCA-------T-----GATACAAT---C-----AGG-GGTACG-TG-G-TCTCCG-ATATACT-T-AA-TCTGTTGTTC---GT----GA-ACTT---ACAAGA-AT-GA-T-CTCTG-TT-CATT---AT-TTTTG-CA--TTT-TCA-TTC---Tttca
gi|22 : aaggtattcttattta---TGTTCGTGAACTTACAAGAATGATCTCTGTTCATTATTTTTGCATTTTCATT---CTACATCTTTCAATCATTAATTGT--CATacatctttcaatcattaattgtcatattaca
gi|26 : aaggtattcttatttattatatatagatttgtcaaaggattacccccgttctaactgatcaaacaatagggcttatttgaagggtgtgaccgcgtcagcaggggggttaattactccaataagtaccttacctcccatgatacaatcaggggtacgtggtctccgatatacttaatctgt-------G----G--G--TC-TCAA-C--AG-TCT-CGTTTGAAGTCCG-TATTT-T-G-CAA-A--TTCT--------ATGGTC----GTTACTTATA--AC-G--ATCT-A-GTTTGCC-AAT-ATGTACAAAT-TTGG-CGTTGGGTC-AAATGC-T-A-TCT-A-ACGTG----TTT-CATA-CCA-A-TT-GGT--A-G--GT-C-G-TG-C-TT--T-AT-ACAT-T-G--A---TTCTGACCA-TGGA-TGACTTC--GT----T-TACC-------------------AGGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGGTGTTTACTCC-TCC--TAAGC-Aattaca
gi|27 : acagTTCAAAATCAG-CATTT-T-A-CAA-A--TTCT--------ATGGTA----G----TTATATAGC-G--ATCT-A-GTCTGCC-AGT-A-G-----AA-CTGC-TAT-GGGTC-AAATG------TAT-G-ACATG----TTT-CATT-CCA-A-TTCGTT--A----------------TT--T-AC-ACAC-T------------GATTATCGAG-TT-------GT------------------AG---------GGGCTCAC--GGCGGAT--AT---G-A-CCG-G--TT---GACAG-GGAATTCATACTCT-TCC--AATGC-ACCTGA--TCCCACCTC---A-----GG-GTGTC---C-----GGG-GGTCCG-TG-T-TTACC
gi|28 : AATAATAAATCAATCAGGAGGGTATATTTG-AATAAAATTG-GCAATTGTAG--AAATTG-------CTTTACTGAAGTAATAGTGTTACATTTCTAAAATATGCGAAACTGCA-TTATGTAAAGGCAAATACAA------CGATCAGTGATCAA-TCTC-GTAAGTCCCAA-AT-AGAA---TAC-AAAAC-AAG-AG-TTGG-GCAA--ACACGGACCCCTGGACA
gi|29 : taGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGATGTTTACTCC-TCC--TAAGC-ACCTGA--TTACGCCGC---T-----GGTATATC---C-----AGG-GACCAG-TT-T-TTTTCCAA-ATTCT-T-A--ATTTGTATTCC--ATAT-GTG-AGTT---ATAATA-TT-GA-T-CACTG-CT-CGTT---AT-CTTCG-t
gi|3 : TGCACC-AA-GGGA-GG-TT-A-CTTA-CAA--AC--AAG--------------------------G--TT-TCAA-C--AG-TCG-CGTCTAACGTCAG-CATTT-T-G-CAA-A--TTTT--------ATGGTC----G------ATA-----------T-A-GTTTGCG-GGA-ATG-----GC-CTAC-CATTGGGTC-AAATGT-T-G-TCT-G-ACGTG----TTT-TATA-TCA--------------------------C-TT--C-AT-ACAC-A-G--A---TTTTGACTA-CGTA-TTACTCC--GT----T-TACCTGATC--AAT-A--CAAT-GGGATCAC--GGCGGGT--GT---G-A-AAG-G--GC---AACAG-GGGATGTTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTTTGTC---C-----AGG-GATCCG-TG-T-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCT--ATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG-T---TTT-GTA-TTC---TGTTTG-GGACTTACGAGCTTGATCGATGTTCGTTATCCTCGCATTTTCATCCATATACATATTTGCATT-TTGAATGT--TATTATGTACAAATAACAAATCTATAA--AGGTTAT-TA-ATCATAACACTGTGTAGACATAAT--AATGGT-C-AATA--TA--AAAG------------AATTATAAAAC---CCAAA-TACATTTGTGTAAAGG------CAA-------ATACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTGG-GCAA--ACACGGATCCCTGGACA-AACCAGAGGTGGGATCC-GGTGCCTAGGAGGAAT---AAGCATCCCCT--GTTGACCG-GT-CACACCCG---CCGTGA-G-CCC--ATAG---TCT-TG--ATCA-GGTAAACG-GAACAAT-CCGTAGTCAAATCA---GTGTGTGAATAACGGCCT--ATAATG--AAATGTTATTGCAGATGCCAGatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|30 : aTAAATATTTTTATT-CGGAGTGTGACATTATGTTTGAA---------GATAA--AG-TCATGTACGTC-TA-CA---TGCACATGTAATTCAATTGTGCCAATCTTTA--AAAGT----------CAGTTTTAAAA----------TACATTTATGTAAAGG------TAAAGATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTtatgcttgtataaaaagtctatataatgaaattataaatgtgaaaatatgtcattgatacatgttt
gi|32 : AAGC-ACCTAA--TCCCACCTC---T-----GGTGTATC---C-----AGG-AGTCCA-TG------------------------TTTGTATTCC--GTCT-AGG-ACTTGAAACGTAT-TT-GA-TGCATTG-aat
gi|32 : --TAAGC-ACCTAA--TCC-ACCTC---T-----GGTGTATC---C-----AGG-AGTCC------------------------AT-TTTTGTATTCC--GTCT-AGG-ACTT-----GAAA-AT-GA-aaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|34 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagatt----TTT-CATA-CGA-A-TT-GTTGGA-G--G--C-T-T--C-TT--T-AT-AC
gi|35 : tatctagtcagattttttgtcaagaattctataggtaatgaaataaaggtctatcatttgcaaaacacaagctttcaactggccgtccccgaaatgtagctggtgatcgaa-TCC--TAA---ACTTG---TCTCACATCATTT-----GGTATACC---A-----AGG-AGTCTG-TG-T-TTGCTC-A-ACTCT-T-GT-TTATGTATCCT--GTTT-TGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT-
gi|37 : tgatgaaGGTGGGATTGTGGTGTCTA-GGGGAGTATAAAGCATCCCTTTAGTTTGCTGCGT-CACA-CTG---CCG-GATG-CCCATATAGCGCTCTATG-GGTCACTGTAAAAGAGAACAATCACGTAGTCAAcaactacgcggg
gi|38 : -A-TT-GTT--C-G--T--T-A-T--T-TT--T-GT-GTTC-T-G-------TTTGACTA-CGGA-TTGTTCCTTGT----T-AACTTGACT--AAT-A--TGAG-GGACT-----GGAGTGTTAGTGAAG-A-CCA-G-------AACAACGAGA-GCTAATTCA-T-C--TAGGA-ACAGGA--TCCCctcctcggttg
gi|4 : AATC-AA-GACA-GG-CT-A-CTGA-CGA--AC--AAGTT--G---GT----------------G--CT-ACAA-GGGAG-TCA------ATAGTCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----ATATA--AC-G--AT-CCA-GTTTGCC-AGT-ATA-----AC-ATGC-CAGTGGATC-AAATGC-C-G-TTT-G-ACAAGACAGTTT-CATA-CCA-A-TT-GCT--A-G--G--CCG-TT-C-TT--T-AT-ACAC-A-G--A---TTTTCACTA-C---------------------TACCTGATA--AAG-T--TTAA-GGATTCAC--AGTGGAT--GT---G-A-CCG-G--CG---GACAG-GGGATGCTTACTCC-TGC--TATGT-ATCTTA--TCTCACCTC---T-----GGTATATT---C-----AGA-GAGCTA-TG-T-TAGCCC-A-ACTCT-A-A---TTTGTATTCC--GTAT-AGA-AATT-----GAGA-TC-GA-T-CACTG-TT-CGTT---AT-CTTCATC---TTT-ATAGTGCGAGTATTCT-GGACGTACGgaa
gi|42 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaA--TCATGCCTC---T-----GGTATATT---A-----AGG-GGACTG-TG-T-TTGCCC-A-TCTCT-T-A--TATTATATTC
gi|44 : cttacTC---C-----CGG-GATCCT-TG-T-TTGAC----ATTCTCT-ACATTTTGTATTCTCAA----AGG-AATT---ACAAGA-TT-GA-T-CACTcgtatcaatcggagcgtcac
gi|46 : -AAATTC-T-G-TCT-G---GTG----TAT-TATA-GTGGA-TT-GTT--A-GCCG--T-G-T--T-TT--C-AT-A-AT-T-G--A----TTTGACAA-TGGA-TTaaaac
gi|47 : -T-GT-TTTTGTATTCT--ATGT-AGG-CCTG---ACAAGA-TT-GA-T-CACTA-TT-CGTT---AT-ATTTG-C---CTT-
gi|48 : tgtaTC-GTAGTCCCTAA-AT-C-AA---TATAAAAAT-AAG-AGATTGACGCAA--ACATTGATCCCTGGA
gi|49 : tagttCTG---TCCCACCTC---T-----GGTATGTC---C-----A-G-AGTCTG-TG-T-TTGCCG-T-ATTCT-C--T-ATTTATAT
gi|5 : cgTAAATC-GA-GACA-GG-CT-A-CTTA-CAA--AC--AAGCT--GAT-GTT-------GCAGAG--G--TT-TCAA-G--AG-ACA-CTTTTCAAATCAG-CTTTT-C-G-TAA-A--TTCT--------ATGGTC----G----TTATATAAC-G--ATCT-A-ATTTGCA-AAT-ACA-----GC-CTTT-CATTGGGTC-AAATGT-T-G-TCT-G-ACGTG----TTT-CATA-CCA-A-TT-GTT--A-G--GC-C-G-T--TATT--T-AT-ACA
gi|51 : cacatttctttgattgattttatgaaacactgatctctaaacagtcggaattcccatgggcatgaattgtgctactttgttagctgacctgttcttatattcttacaaggcaaattttattcaaaagtttctacatgagaagaaaaaatctttagctgtggtttttaattcgatagttggatatatcgatatcgttttatctattgatagctattattttcatttatatgtcgattcgttatatcccattgaacaacagacaccacagagtcatcgtacttggatattttactgaacgcagacactatcggcaaactaacaactcaaactttatgacaaacgggacgatttcagcttctccactgtcaacttcccatatgtacaaatgtatgtagcaacatcccatcagcacttgtatatggtgtttattcgatatgaaagagcttgttctgtgaataatcagttttT--T-AT-ACGC-T-G--A---TTTTGACTA-CATA-TTACTCC--GT----T-CAGCTAATC--t
gi|52 : TT---AAGAGA-TT-GA-T-CACTG-TT-CATT---AT-CTTCA-C---TTT-
gi|53 : aaGG-AATT---ATGAGA-TT-GA-T-CACTG-TT-CGTT---AT-C
gi|54 : CCG-GT-CACACTCG---CCGTGA-G-CTC--ATAG---TC
gi|6 : TGAATC-GA-GGCA-GC-CT-A-CTTA-CAA--AC--AAGTT--G-TTGTT-------GCA--GATG--CT-TCAT-A--AG-TCA-CGTTTAAGGGCAG-CAATT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--AC-G--AT-TTA-GTTTGCC-AGT-ATG-----GC-CTGC-CATTGGGTC-AAATGC-T-G-TCT-G-ATGCG----TT
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagttttT--GT---G-A-CCG-G--TC---AACAG-GGGATACATACTCC-T-----AGAC-ACCTGA--TCCCACCTC---T-----GGTGTGCC---C-----AGG-GGTCCG-TG-T-TTGCCG-A-ACTCT-TGGT-TTTTGTATTCT--AATT-GGG-ACTT---ATGAGA-TT-GA-T-GACTG-TT-CGTT---GT-CTTTA-C---ATT-GTG-ATC---Tgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaactcttggtttttgtattctaattgggacttatgagattgatgactgttcgttgtctttacattgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgtT-CTTGG-T---TTTTGTA-TTC---TAATTG-GGACTTATGAGATTGATGACTGTTCGTTGTCTTTACATTGTGATC---TT---TCTTTGTA---CTAAGTTT--AATTAttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|8 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgttgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaacTGATTC-GA-GGCA-AGACT-A-CTTA-CAA--AC--AACTT--G-TCGCA-------G----G--GATTT-TGAA-A--AG-TTA-CGTTTAAAGGCAT-TATTT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--AC-G--ATCT-A-CTATGCC-CAT-ACA-----AA-CTGC-CAATGAGTC-AAATGC-T-G-TCT-G-ACATG----TTT-CATA-GCA-A-TT-ATT--A-A--G--CTG-T--T-TT--TCAT-ACAC-T-G--AATTTTTTGACTG-CATA-TTATTCC--AT----T-TACTTGATC--AAG-A--CAAT-GGGCTCAA--GGCGGGT--GT---G-A-CCT-C--TC---GACAG-GGTATGCTTACGCC-TTT--TAGGC-ACCTGA--TCCCAACTC---T-----GGTATGCC---C-----AGG-GGTCTG-TG-T-TTGTCT-A-ACTCT-T-G--TTTTGTATTCT--ATGA-AGG-ACTT---ACGAAA-TT-GA-T-CACTG-TT-CATT---AT-GTTTG-CCCTTTC-ATA-CTC---TGaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|9 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagatttTAAATC-GAAGGCA-AG--T-A-CTTA-CAG--AC--AAGTT--GTT-GCTGTAG---G----G--G--TT-TCAT-T--TG-CCATTGTTTAAatgccatagaagtacat
gi|9 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgtttGTAAAGG------CAAAAGATACGAACAGTG-TCAAATCTCCGTAAGTCGAAACATGAGAACCATACAAAAACTAAGTAG-TTGG-AAAGTGACACGGACCCCTGGACACAACCAGAGGTGGGATCAAGGTACCTAGAGGGAGT---AAGCTTCTCCT--GTT-ACCG-GTTCACACCCGGTCCCGTGA-GGCAC--ATAG---TCT-TGAAATCAGGGTAAACG-GGACAATCCCGTAGTCAAATCATGGGTGTGAAAAAAACGGCTTAAACAATGGCAAATGgccgtttttttcacacccatgatttgactacgggattgtcccgtttaccctgatttcaagactatgtgcctcacgggaccgggtgtgaaccggtaacaggagaagcttactccctctaggtaccttgatcccacctctggttgtgtccaggggtccgtgtcactttccaactacttagtttttgtatggttctcatgtttcgacttacggagatttgacactgttcgtatcttttgcctttactagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TCTTTCAAACGACGAAATTCTACAAAATCACGCTTCAGCTTTAATCACATTTAATATCCCAGTCAATGGGACGGACGAATATGAATTATCGTACCTATGCTGGATTCATAAAAAAACCCTTACAAAGATACATTGCTGAGTCTAGTAAATGTTCCACCAAACCCCTGTCGTTACTCTTCACGAAAATATTGACTGCTGTCAAGGATCAACCTTCAGACGTATTGTGAAAGTACATATGCCAGAAGTGGTAATGTGGATTCTAAAAGATTCTTCTAAACAATTCTAGTGAATTTGAAATCCCAGAACCTTTCTCATATCAACAACATCGAATCATGTGATTTTTCAAAAAATTCATAACCATTCCGCACGATGAATTATAGGTAAGACTTTGTAAAGTTACAAACGATTGCTTCTTTAACAAAAATGGAAAGGAAATATTCATATCTAATGATCAGCCATTCACAAAATTACTCTGATTCTAAACACAAGTACTCCGAAGTTGATATCAAAGCAATGCTGGAGTTCCTCATTGACAATATCTTTGTAGTTTTTGGCAATCAGGTCTTCCAACATTCTGTTGTAATTCCAATTGTCACGAATTGTGTTCCTTTGTTAGCGGACCTATTTTTATATTCTAATGAGGCAGAATGCATTCAAAAGCTTCTACATGAAAAGAAGAAATCTGTAGCGGGGACCTTTAATTCGACATATTGACGAGGTTTAGTATTAATGGTTTTCATGCATATGTCGATTTAATCGAAACGAACTAGAAATAAAGGACACCACATAATAACCCATGCCTGCTTCAAACTTGGATATTTTATTGAACATTGACATTAACGGCAAACTATCTACTTAACGTTATGACAAATGGGACGATTTTA
Unaligned ( gi|7 ): ATTAAAAAGAACTTTATACCTTGTCAGAATGGATAAAAAGTATAAGAAGAATATTAAAATCCCGTATTACACAAATGAAAACAAAAGTGTGTATCACCTAGCCTTCTGTGTTTCGAAAACCAGAAGTGATCAAAGAATTAGATAGGATACATGAGAAATATGTTTTGGTTCCAGCTGGCAAAGTCTGTAACAACATTGTCTTCGTCTGTAAGGCTCATTATTACAACTGTATTTTGAACGAACTTGGTATTAACTCAACATTTGGTAATCGTACTTACACTCCAACTGCTCTTTCAAAAGAGGAAAATCTTCAAAATCGTGTTTCAGTTTTATACACTTTTAATATCCTAATCAATGGGACGGATGTTACCGTACCTATACTGGATTCCAAAACTTTGCAAAAAAAAAAACCCAAAAACAAAAACAAAAAAAAACCTAGCAAAGACACATTGCTGGATCAAGTAAATGTTCCATCAAGCCCCTGTCTTTACTCCTCACGAAAATTATTTACACTTGTGAAGGAGCATTGCTTTAGACGTATTGTTCAACAGCATATATGCAAGAAGTGGGGTAAATCAAATTTGGATTC
Unaligned ( gi|16 ): GATATATCAAAAAACTCTACACTTTAACCCACCATTTCGCACGATAAATTGGAAAAGACAACGACTTACGAGAAGTTTGTTTCGTTAACAATAAATGGAAAAGGGAATATTCTTATCTAGCGATCTGTCATTTCAAAAAATTATTCTGTTAAAACTCGCACTTCACATTCTACCCATCACAAGTACTGTATACTCTGAAGTTGAATATTTAAGCAATGCTGGCTTCCTCACTTTGTGAATGCGAGAAAATATCAATTTGCAATGTTCCTGTGAACCACAAGTTGTTCACCAATTCTCCATTTTCTGTATTCCATTTTTGATTGGACGTTCTCATTTTCTTA
Unaligned ( gi|23 ): CTTCCACATCTGCCTTTCTTATTTAGTGTTATAGTTGATCATAAATGTTAATCGGCAAACACGGTCCAAATTTCTAACCTTTCTAACAAATGGGATAATTTCTAAATTCTCTATAGTCAATCTTCCCAGCATTTTATTTTGCTGCTACTCGGTGTTTTTCTCACAACTGGATTCAAAGTAGCAAGAGTTTCAACGTATTACATTTTTAAAAATAAAAAAAATCGAGGACAGGCTAATGACAAAGCAATTAATGTTAC
Unaligned ( gi|24 ): ATTTTATATTGACAAAGGGATCCCCACTCTTAAAAATATTGGACAGCACTACCCTTGCAATATGCACTCTCTATCAAGTCTGTGTCTTTCTTGTACCCAAGTTTTCATCTCAAATATTCCTTCTCCAATAGAGGTACAATGATAATTAGGCAGGAGTTGCAGAGGAACAGAATGTCGAAAGGACAGACAGACAGACACAGCGCTGTTATGTCATGATACGCTCGCTTTTTATGTCGGGCATATAAAAAGT
Unaligned ( gi|25 ): AAAACAAAAAATGCATATTATCTACCAACTATGTTTAACCAACAAGAAGCGTATGAACCGAATTAGATAGGGAGTTTGAGGAATAAAAATATAGGCTCCAAGATGATAAAAGCTTGTACATATTGTCTTTTGTTTCTAAGGCTCATTAAAACAATAATTTTACAGGGAATTTGGATTTACGCCAACTTTAGTAATTCCAGTTTTACTTAAACTAAGTTCCTTCTCCAAAAGATGAAAAT
Unaligned ( gi|31 ): TTGGATGCTATATGAATACTCTGATACAATGGCGCAAGCTAGCAACCACTGTAATGACAAACATGGACATTTCATCTTCTCCAGCGTCAAGCTACCCATACTTATGAAATATTTATGAAACAAATCCATTATTAATTTGCATATGATATCTTATTCGATACGCAAGACGTGTCC
Unaligned ( gi|33 ): TGTTCCTTTTGGTTGCTGACCTGTTTTCGTATTCTTACGAGGCAGAATTTATTCAAAAGCTTCTTCAAGAGAAGAAAAAAATTTCTAACTGTGGCCTTTAACTCGACAGTCAGATATATTGATGACGTTTTATCTACTGAATATAATTATTTGCTTTTAT
Unaligned ( gi|36 ): CCTGTACGAGTATGGGATATTCTAAATGTTAAAAAAGCAGATGTTCTTTTCACTCTTTACTACAATTTATGGATACCAAGGTTACATTATAGTTCCAGATGTGACCAAAAAACTATCATGGCGACGATTGTT
Unaligned ( gi|39 ): AATGTTAAAATAAAGCAGATGTTCTTTTCACTCTTTACTACATTTATGATACAGGTTACAGTTATAGTTCCAGATGTGAACCAAAACTATCATGGCGACGATT
Unaligned ( gi|40 ): CCTTTTTGTCGTAATCTGATGAGGTAGAATTGAATCAAAAGCTTTACACCAGAAGCAGAAAATATCTTATCTTCGCCTTCATACATCGAC
Unaligned ( gi|41 ): AGGAGGAGTTGCAAAGACAAAGTGAAACAGACAGACAACAGCAGTATATAGCATAATACACCAGCATTTTTATACGGGCGTATAAAATTT
Unaligned ( gi|43 ): TTCTTACGAGGCAGAATTTTCTTAATTAAAAAAGTCTTCTACAGAAGAGGAAGAGAGAAATCTAGCTATATGCTTTT
Unaligned ( gi|45 ): AAACACTCTGATTCCAAACAGATATTCAGAGTAAAGCTGATATCAAACAGATTTTGGAGTTCTTCATT
Unaligned ( gi|50 ): TCGTACCTATACTTCATAAAAACTCTTACAAAGATACATTTCCAAG
Alignments
lowQualScore : 777777777777777777777 222 1111 1 1111111111 22222 111 111 2222 111 111 11 22222222 1111 11 222222222 11 66666666666 6666666666 5555555 111 1 11 11 1 33 222 11 2 1 1 111 1 1 2222 1 111111 111 1 222 11 11
lowQualScore : 2 2 2 2 2 2 2 33 33 555555555555555555555 33 77 2 6666 2 2 0 1 2 2 2 2 4444 88888888 5555 5555 66 33 2 111 2 2 2 2 6666666 2 2 2 44 2 2 2 4444 2 44 2 2 0 55 2 22 5555 2 0 44 7777 1 444 22 4444 2 1 2 33 2 55 9999999 66 0000000000 33 66 444 2 2 2 33 5555 2 2 33 2 22 333 55555 0 333 55555 2 2 222 22 2 2 11111 2 4 22 2 333 2 2 2 4 2 2 888 2 2 2 111 000 4 666 3 8 3 0 4444 55 1 22 444 0 444 1 9999 3 88 6 33333333 7 6666 111 88 666666666 88 55555555555 1 1 5555555555 7 7777777 0 8 6 6 6 111 6 8 8 0 33 2 88 3 00 6 333 88 6 0 0 2 777 3 0 0 1111 0 555555 666 3 6 000 1 1 88 77
lowQualScore : . . . . . . . .. .. ..................... .. .. . .... . . . . . . . . .... ........ .... .... .. .. . ... . . . . ....... . . . .. . . . .... . .. . . . .. . .. .... . . .. .... . ... .. .... . . . .. . .. ....... .. .......... .. .. ... . . . .. .... . . .. . .. ... ..... . ... ..... . . ... .. . . ..... . . .. . ... . . . . . . ... . . . ... ... . ... . . . . .... .. . .. ... . ... . .... . .. . ........ . .... ... .. ......... .. ........... . . .......... . ....... . . . . . ... . . . . .. . .. . .. . ... .. . . . . ... . . . .... . ...... ... . . ... . . .. ..
lowQualScore : 9 9 9 9 9 9 9 99 99 777777777777777777777 77 33 7 7777 9 9 1 0 9 9 9 9 9999 55555555 0000 0000 55 22 4 555 4 5 7 4 2222222 2 2 2 66 2 2 2 5555 2 22 1 1 1 88 1 99 7777 0 0 55 4444 9 111 99 4444 2 0 2 99 5 99 5555555 99 5555555555 44 55 444 5 5 5 44 9999 5 4 11 1 88 777 33333 2 555 00000 0 0 555 22 1 1 99999 5 1 44 4 999 2 2 2 7 5 7 333 5 5 7 888 777 0 444 9 0 7 7 3333 88 0 22 000 2 000 0 0000 7 33 7 00000000 3 7777 333 33 777777777 33 77777777777 0 0 3333333333 3 6666666 8 0 7 7 7 777 7 0 0 0 88 5 33 3 33 7 333 33 7 0 0 5 555 2 0 0 2222 0 777777 777 3 7 555 0 0 55 55
consensus : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--ACG--A-T-T-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--G--C-GT-T-T--T--T-A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAAC---C-AAA-TACATTTATGTAAAGGCAAATATAA--CGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTGG-GCAA--ACACGGACCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
Reference ( family-7 ) : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--ACG--A-T-T-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--G--C-GT-T-T--T--T-A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCTGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAA----CCAAA-TACATTTATGTAAAGGCAAAGG--A--CGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTGG-GCAA--ACACGGACCCCTGGACACAACCA--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
gi|10 : TGATTC-GA-GGCA-AG-TTGA-CTTA-CAA--AC--AAGTT--G-T--TTATCACAGG----G--G--TT-TCGA-C--AG-TCA-CGTTTAATGGCAG-CATTT-C-GACAAGA--TTCA--------ATGAT------------------------T-T-A-ATTTGCC-CAT-ACA-----ATTCTGTTCATCTGGTCCAAACACTTGCTCT-G-ACATG----TTTACATA-GCA-A-TTGTT--A-G--GA-C-GT-T-T--T--TCATTACAC-T-G--A---TTCTGAGTA-TGGACTTACTCCC--GT----C-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GACGGGT--G----G-ACCCG-G--TC---AACA--GGGATGCTTACTCCTTCC--GAGG-------------CATCTC---T-----GGTGTGTC---C-----AAC-GGTCCGTTG-TATTGCCC-A-AC-CT-T-GG-TTTAGTATTCTATTT-TGGCATTT---ACGAGA-TTCGATT-TACGT-TT-CGTT---ATATTTTG-CCT-TTT--TCA-TTT---TG
gi|11 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttt--------ATGGTT----G----TTATA--ACGTGG-T-C-A--TTCACC-AGT-ACA-----A-CC-G-CCAT-TGGGTCAAG-GCTTG-TCTAA-ACGTA-----TT-CGTA-GGA-A-TTTCA--A-G--C--C-GT-T-C--T--T-A-TACAC-C-G--A---TTTCGACTA-CGGA-TTAAT-CC--AT----T-TATCT-ACCAAAAA-A--CAAT-GGGATC-C--GGCAGAT--TT---G-A-CAG-G--TT---AAAAG-GGTATGCTTACT-C-TCC--TATGT-ATCTGA--TTCCACCTC---T-----GGTATATCAAGCTTTTAAGG-GGTCCG-TGTT-TTGCCC-A-ACTTT-T-GT------TA-TCTGTTTGGGG-ACCA---ATGAG--CC-GG-T-CACTG-TCACATTTTAAT-CTTTG-C---CTT--ataaagacgtttctaattttttgtaaa
gi|12 : tttaTGAATC-GA-GACATGT-TT-A-CTTA--AG--AC--AAGTT----T-GTT-------GTGCAG--GGTTT-TCAA-ttcataactaaattttacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|13 : atgtttatattcttgtgacgcagaattaattcagaagcttctacatgagataactcgacaattagatacatgtactaacgaactagaaatagaggacaccacagaggtctttccatgtctcgttccgtactgatatttttatagaacattgacattacgccaaacctaacttactcaactttataacaaacgggacggatttcagcttctccatgtcaactccccaatatttatgtagcaagtatccatcatcacatgtataatgggtgtgtatgtctctcaacttattcgatacgcaagcaagcttgttctgctatgatcaggttttA-A--TTAT--------ATGGTC----G----TTATA--ACG--A-T-TTA-GTTTGCA-AAT-ACA-----A-CTTA-CGAT-TTGGTCAAATG--------------------TTT-CACA-CTA-A-TTCTT--A-A--G--C-TT-T-TCTT--T-A-AACAT-T-G--A---TTTTTACTA-CGAA-TTACT-TC--ATATACTGTACCTGATC--ACA-A--TAAA-GGGCCCGT--GGAGGGT--GT---G-A-CCG-G--TT---AACAG-GGTATGATTGCTCC-TCC--TGGGC-ACCCGA--TCCCACCTC----------------------------A-GACTCG-TG-T-TTGCCC-A-ACCCT-T-TA-ATTTGTATTCCGAAT-AAG-ATTT---ATGAGA-CC-GG-T--ACTG-AT-CGTT---AC-CTTCA-C---C-----TA-TTC---
gi|14 : taggctgtttaagAATC-GA-GGCA-GG-CT-A-CCGA-CAA--AC--AAGTTC-A-T-GTTACAG---G----G--G--TT-CCAA-C--CG-TCT-CGTTTGAAGTCGG-CATTT-C-A-CAG-----TCTATAGATGCATGGTC----G----TTATA--ACG--A-TCT-A-GAGTGCC-A-----------A-CCTG-TCGT-TGGGTCAAATGA-TG-TTC-G-ACATG----TAT-CATA-CTA-A-TTGTT--A-G--GT-C-GT-TCT--T--T-A-TACAC-------------TGCCTA-CAGA-TTATT-CG--AT----T-T-CCTTATC--AAA-ATTTAA---GGCTAAC--TGCGGGT--GT---A-A-CCG-G--TCTTGAACAG-GGGAT-TTTAC-----CC--AAGGT-ACTTGA--TCCCATCTC---T-----GGTATATC---C-----AGA-GGTCCG-TG-T-TTGACC-A-TCTAT-T-CC-TTATCTATTatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|14 : agcctgttctatgcacggccagttttttCA-----A-CCTG-CTAT-TGGGTCAAATtgacccaatagcaggttg
gi|15 : agcctgttctatgcacggccagttttttaatcgaggcaggctaccgacaaacaagttcatgttacaggggttccaaccgtctcgtttgaagtcggcatttcacagtctatagatgcatggtcgttataacgatctagagtgccaacctgtcgttgggtcaaatgatgttcgacatgtatcatactaattgttaggtcgttctttatacactgcctacagattattcgatttccttatcaaaatttaaggctaactgcgggtgtaaccggtcttgaacaggggattttacccaaggtacttgatcccatctctggtatatccagaggtccgtgtttgaccatctattccttatct-A--TTCT--------ATGGTC----G----TTATA--ACA--A-T-T-AAGCTTACC-AAT-ATG-----A-CCTA-TCAT-TGAGTCAAATGC-TG-TCT-G-ATATG----TTT-CATA-GCA-A-ATGTA--A-A--G--CCGT-T-T--T--TCA-CACAC-T-G--A---TTT-GACTA-CGGA-CTGTT-CC--GT----T--ACCTGATC--AAG-A--CTAT-GAGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---AACAG-GGGATGCTTCTCCC-TCC--TAGGCCACCTGG--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-A-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCTATTT-AGG-ACTT---ACGAAA-TT-GA-T-CACTGTTT-CGTT---AT-CTTTG-C---TTTACATG-TTT---TG-TCA-GAAC
gi|17 : TGTATC-GA-G-CA-GG-CT-AACTTA-CAAGGAC--ACGTT--CCT-GTTTGCAG--G----G--G--TT-TCAAAC--AG-TCA-CATT-AAAGACAGGCATTTTC-G-TAA-AAATTAT--------ATGGTC----T----GTATA--GCG--A-T-TTA-GTTTACC-CATGATG-----A-C-TC-CCAT-CGAGTCAAATGC-TA-TCT-GAATGTG----TTT-CATA-GCA-A-TTGTT--A-A--GC-C-GT-T-T--TCCC-A-TACACTT-G--A----TTTGACAA-CAGA-cactctgattgcccacacaagtac
gi|18 : gtcaaacttctctatatttaatgtcgcaatagtttcaccatcaaacctgctgtggtgtgtatgtctctcaacgttattcaatacaaaaattgttctgccgtatgatcagatttAATC-AC-AGCA-GG-CT-G-CTGT-CAA--TC--ATTTT--GAT-GCTTCAG---G----A--G--TT-TCAA-C--AT-TGC-CGTTTAAAGTCAG-TAGTT-T-G-CAA-A--TTCT--------GTGGTT----G----TTATA--TTG--A-T-TTA-GTTTGCC-AGT-GCA-----A-CCTG-CCAT-TGAGTCAAATAC-AG-TTT-G-GCATG----TTT-AATA-CCG-ATTTCCT--A-G--GT-C-AT-T-T--TG-T-A-AACAC-T-G--A---TTTCGACTA-AGAA-TTA---AA--GT----T-TACCCAATC--AAGTA--TA---GATCTCAT--GGCGGAT--
gi|19 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttTGAATC-GA-GGCA-AG-CT-A-CTTA-CAG--AC--AAGTT--G-TTGTT-------GCAGGG--G--TT-TCAA-C--AG-TCA-CGTTTAAAGGCAG-CATTT-C-G-TAA-A--TACT--------ATGGTC----G----TTATA--ACT--ATT-T-A-GTTTACC-AAT-ATG-----A-CCTA-CCAT-TGAGTCAAATGC-TG-TCT-G-ATGTG----TTT-CATAGCCA-T-TTGTTGGA-G--GTCC-GT-G-T--TGCC-C-TACAC-TCG--A---TTTT
gi|2 : atatttatgtagcaatattccatcatcaactgcatatggtgtgtatacatgtctcttaacttattcgatacgcaagagcttgttctgcgtatgatcagatttTGAATCCGA-GACA-AG-CT-A-CTTATCAG--ACGAAAGTTTCG---GTT-------GCAGAG--G--TTATCAA-A--GGGTCA-CGGT-AAAGCCAG--ATTT-CCG-TAA-----TCT--------ATGGTCCTATA----TTATA--ACA--A-T-TTA-GTTGACTTATT-ATG-----A-CCTA-CAAT-TGA-TCAAATGC-TG-T-T-G-A--TG----GTT-CATA-ACC-A-TTGTT--A-A--G--C-CT-T-T--T--C-A-C-CAA-T-GTGA---CTTTGACTA-CG-A-TT--T-CC--GT----G--ACCTGATCTAAGG-A--CTAT-GG-CT-AC--GG-GGGTAGGT---GTA-CAG-GGGTC---AACCA-GGTCTGCTTAC-----CC--TAGGC-ACCTGA--CCCCACTCG---TAACAGGATG-GTC---C-----AGGTGTTCCG-TA-A-TGACTC-A-ATTCT-T-G---TTTGTATTATATTT-AGG-AC-T---GC-AGACTT-GA-TCCACTG-TT-C-TTAA-AT-CTT-G-C----CT--ACA-TTC---TGCTC
gi|20 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttcttAATC-GA-AACA-GG-CT-A-CTTA-CAA--AA--AAGTT--A-T-TTTTGCAG--G----G--A--TT-TCAA-C--AG-TCG-AATTTAAAGGCAG-CATGT-C-G-TAA-A--TTCT--------TTGGTC----G----TTGTA--ACG--A-T------TTTGCatattggatatactttaggaa
gi|21 : actacgatctttatagatgaaatattaacgggacgatttgagcttctccatcgtcaacttcccatatttatgtagcaaatgtagcaatattatattccatcatcacctgcatattatgttgtgtaggtctctcaacttattcgatacgcagagcttgttctgcgtatgatcagtttttt-ACA-----A-CCTG-CCAT-TGGGTCAAATAA-TG-TCT-G-ACGTG----TTT-CTTG-GCT-A-TTCTT--AAG--G--T-GT-TCT--T--T-G-TACAC-A-T--A---TTTTGACGA-CGGA-TTACT-CC--GT----T-TACCTGATC--AGG-A--CTAT-GGGCTCAC--AACAGGT--AT---G-A-CCG-G--TC---TACAG-GGGATGCTTACTCC-TCT--TAGGC-ACCCGA--TCTCCCCTC---T-----GGTGAGTC---C-----AGG-GGTCAT-TG-T-TTGACC-A-ACTC--------TTTGTTTTCT----------CTT---ACGAGA-TT-GA-T-CACTA-TT-CGTT---AT-TGTCG-C---CTT--ttagaattat
gi|22 : cccaaT-T-TA-T--T-A-TATAT-A-G--A---TTT-GTCAA-AGGA-TTACC-CCC-GT----TCTAACTGATC--AA--A--CAATAGGGCTTATTTGAAGGGT--GT---G-A-CCGCG--TC---AGCAG-GGGG-GTTAATTAC-TCCAATAAGT-ACCTTACCTCCCA-------T-----GATACAAT---C-----AGG-GGTACG-TG-G-TCTCCG-ATATACT-T-AA-TCTGTTGTTC-GT----GA-ACTT---ACAAGA-AT-GA-T-CTCTG-TT-CATT---AT-TTTTG-CA--TTT--TCA-TTC---Tttca
gi|22 : aaggtattctta---TGTTCGTGAACTTACAAGAATGATCTCTGTTCATTATTTTTGCATTTTCATT---CTACATCTTTCAATCATTAATTGT--CATacatctttcaatcattaattgtcatattaca
gi|26 : aaggtattcttatttattatatatagatttgtcaaaggattacccccgttctaactgatcaaacaatagggcttatttgaagggtgtgaccgcgtcagcaggggggttaattactccaataagtaccttacctcccatgatacaatcaggggtacgtggtctccgatatacttaatctgt-------G----G--G--TC-TCAA-C--AG-TCT-CGTTTGAAGTCCG-TATTT-T-G-CAA-A--TTCT--------ATGGTC----GTTACTTATA--ACG--A-TCT-A-GTTTGCC-AAT-ATGTACAAA-TTTG-GCGT-TGGGTCAAATGC-TA-TCT-A-ACGTG----TTT-CATA-CCA-A-TTGGT--A-G--GT-C-GTGC-T--T--T-A-TACAT-T-G--A---TTCTGACCA-TGGA-TGACT-TC--GT----T-TACC-------------------AGGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGGTGTTTACTCC-TCC--TAAGC-Aattaca
gi|27 : acagTTCAAAATCAG-CATTT-T-A-CAA-A--TTCT--------ATGGTA----G----TTATATAGCG--A-TCT-A-GTCTGCC-AGT-A-G-----A-ACTG-CTAT--GGGTCAAATG-----TAT-G-ACATG----TTT-CATT-CCA-A-TT-------------C-GT-TAT--T--T-A-CACAC-T------------GATTATCGAG-TT--------GT------------------AG---------GGGCTCAC--GGCGGAT--AT---G-A-CCG-G--TT---GACAG-GGAATTCATACTCT-TCC--AATGC-ACCTGA--TCCCACCTC---A-----GG-GTGTC---C-----GGG-GGTCCG-TG-T-TTACC
gi|28 : AATAATAAATCAATCAGGAGGGTATATTTG-AATAAAATTG-GCAATTGTAGA--AATTG-------CTTTACTGAAGTAATAGTGTTACATTTCTAAAATATGCGAAACTGCATT-ATGTAAAGGCAAATACAA--CGATCAGTGATCAA-TCTC-GTAAGTCCCAA-AT-AGAA---TAC-AAAAC-AAG-AG-TTGG-GCAA--ACACGGACCCCTGGACA
gi|29 : taGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGATGTTTACTCC-TCC--TAAGC-ACCTGA--TTACGCCGC---T-----GGTATATC---C-----AGG-GACCAG-TT-T-TTTTCCAA-ATTCT-T-A--ATTTGTATTCCATAT-GTG-AGTT---ATAATA-TT-GA-T-CACTG-CT-CGTT---AT-CTTCG-t
gi|3 : TGCACC-AA-GGGA-GG-TT-A-CTTA-CAA--AC--AAG--------------------------G--TT-TCAA-C--AG-TCG-CGTCTAACGTCAG-CATTT-T-G-CAA-A--TTTT--------ATGGTC----G------ATA-----------T-A-GTTTGCG-GGA-ATG-----G-CCTA-CCAT-TGGGTCAAATGT-TG-TCT-G-ACGTG----TTT-TATA-TCA-----------------------C-T--T--C-A-TACAC-A-G--A---TTTTGACTA-CGTA-TTACT-CC--GT----T-TACCTGATC--AAT-A--CAAT-GGGATCAC--GGCGGGT--GT---G-A-AAG-G--GC---AACAG-GGGATGTTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTTTGTC---C-----AGG-GATCCG-TG-T-TTGCCC-A-ACTCT-T-GT-TTTTGTATTCTATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG-T---TTT--GTA-TTC---TGTTTG-GGACTTACGAGCTTGATCGATGTTCGTTATCCTCGCATTTTCATCCATATACATATTTGCATT-TTGAATGT--TATTATGTACAAATAACAAATCTATAA--AGGTTAT-TA-ATCATAACACTGTGTAGACATAAT--AATGGT--CAATA--TA--AAAG------------AATTATAAAAC---CCAAA-TACATTTGTGTAAAGGCAAAT---------ACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTGG-GCAA--ACACGGATCCCTGGACA-AACCA--GAGG-TGGGATCC-GGTGCCTAGGAGGAATA---AGCATCCCCT--GTTGACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-T-GA-TCAG-G-TAAACG-GAACAAT-CCGTAGTCAAATCA---GTGTGTGAATAACGGCCT--ATAATG--AAATGTTATTGCAGATGCCAGatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|30 : aTAAATATTTTTATT-CGGAGTGTGACATTATGTTTGAA---------GATAA--AG-TCATGTACGTC-TA-CA---TGCACATGTAATTCAATTGTGCCAATCTTTA--AAAGT----------CAGTTTTAAAA----------TACATTTATGTAAAGGTAAAGATAA--CGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT-AGAA---TACAAAAAC-AAG-AG-TTtatgcttgtataaaaagtctatataatgaaattataaatgtgaaaatatgtcattgatacatgttt
gi|32 : AAGC-ACCTAA--TCCCACCTC---T-----GGTGTATC---C-----AGG-AGTCCA-TG------------------------TTTGTATTCCGTCT-AGG-ACTTGAAACGTAT-TT-GA-TGCATTG-aat
gi|32 : --TAAGC-ACCTAA--TCC-ACCTC---T-----GGTGTATC---C-----AGG-AGTCC------------------------AT-TTTTGTATTCCGTCT-AGG-ACTT-----GAAA-AT-GA-aaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|34 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagatt----TTT-CATA-CGA-A-TTGTTGGA-G--G--C-TT-C-T--T--T-A-TAC
gi|35 : tatctagtcagattttttgtcaagaattctataggtaatgaaataaaggtctatcatttgcaaaacacaagctttcaactggccgtccccgaaatgtagctggtgatcgaa-TCC--TAA---ACTTG---TCTCACATCATTT-----GGTATACC---A-----AGG-AGTCTG-TG-T-TTGCTC-A-ACTCT-T-GT-TTATGTATCCTGTTT-TGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--
gi|37 : tgatgaaCAACCGAGGAGGGTGGGATTGTGGTGTCTAGGGG-AGTATAAAGCATCCCTTTAGTTTGCTGCGT-CACACT-G---CCG-GATGCC-CATATAGCGCTCTATGGG-TCACTG-TAAAAGAGAACAATCACGTAGTCAAcaactacgcggg
gi|38 : -A-TTGTT--C-G--T--T-AT-T-T--T--T-G-TGTTC-T-G-------TTTGACTA-CGGA-TTGTT-CCTTGT----T-AACTTGACT--AAT-A--TGAG-GGACT-----GGAGTGTTAGTGAAG-A-CCA-G-------AACAACGAGA-GCTAATTCA-T-C--TAGGA-ACAGGA--TCCC
gi|4 : AATC-AA-GACA-GG-CT-A-CTGA-CGA--AC--AAGTT--G---GT----------------G--CT-ACAA-GGGAG-TCA------ATAGTCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----ATATA--ACG--A-T-CCA-GTTTGCC-AGT-ATA-----A-CATG-CCAG-TGGATCAAATGC-CG-TTT-G-ACAAGACAGTTT-CATA-CCA-A-TTGCT--A-G--G--CCGT-TCT--T--T-A-TACAC-A-G--A---TTTTCACTA-C----------------------TACCTGATA--AAG-T--TTAA-GGATTCAC--AGTGGAT--GT---G-A-CCG-G--CG---GACAG-GGGATGCTTACTCC-TGC--TATGT-ATCTTA--TCTCACCTC---T-----GGTATATT---C-----AGA-GAGCTA-TG-T-TAGCCC-A-ACTCT-A-A---TTTGTATTCCGTAT-AGA-AATT-----GAGA-TC-GA-T-CACTG-TT-CGTT---AT-CTTCATC---TTT--ATAGTGCGAGTATTCT-GGACGTACGgaa
gi|42 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaA--TCATGCCTC---T-----GGTATATT---A-----AGG-GGACTG-TG-T-TTGCCC-A-TCTCT-T-A--TATTATATTCCGTAT-
gi|44 : cttacTC---C-----CGG-GATCCT-TG-T-TTGAC----ATTCTCT-ACATTTTGTATTCT-CAA-AGG-AATT---ACAAGA-TT-GA-T-CACTcaatcggagcgtcac
gi|46 : AAATTC-TG-TCT-G---GTG----TAT-TATA-GTGGA-TTGTT--A-GCCG--T-GT-T-T--T--C-A-TA-AT-T-G--A----TTTGACAA-TGGA-TTaaaac
gi|47 : TGTAAAGGCAAATATAA--CGAATAGTGATCAA-TCTT-GTCAGGCCTAC-AT-AGAA---TACAAAAAC-A
gi|48 : TC-GTAGTCCCTAA-AT-C-AA---TATAAAAAT-AAG-AGATTGACGCAA--ACATTGATCCCTGGAAAC
gi|49 : taCTG---TCCCACCTC---T-----GGTATGTC---C-----A-G-AGTCTG-TG-T-TTGCCG-T-ATTCT-C--T-ATTTATAT
gi|5 : cgTAAATC-GA-GACA-GG-CT-A-CTTA-CAA--AC--AAGCT--GAT-GTT-------GCAGAG--G--TT-TCAA-G--AG-ACA-CTTTTCAAATCAG-CTTTT-C-G-TAA-A--TTCT--------ATGGTC----G----TTATATAACG--A-TCT-A-ATTTGCA-AAT-ACA-----G-CCTT-TCAT-TGGGTCAAATGT-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--GC-C-GT-TAT--T--T-A-TACA
gi|51 : cacatttctttgattgattttatgaaacactgatctctaaacagtcggaattcccatgggcatgaattgtgctactttgttagctgacctgttcttatattcttacaaggcaaattttattcaaaagtttctacatgagaagaaaaaatctttagctgtggtttttaattcgatagttggatatatcgatatcgttttatctattgatagctattattttcatttatatgtcgattcgttatatcccattgaacaacagacaccacagagtcatcgtacttggatattttactgaacgcagacactatcggcaaactaacaactcaaactttatgacaaacgggacgatttcagcttctccactgtcaacttcccatatgtacaaatgtatgtagcaacatcccatcagcacttgtatatggtgtttattcgatatgaaagagcttgttctgtgaataatcagtttt--T--T-A-TACGC-T-G--A---TTTTGACTA-CATA-TTACT-CC--GT----T-CAGCTAATC--t
gi|52 : TT---AAGAGA-TT-GA-T-CACTG-TT-CATT---AT-CTTCA-C---TTT--
gi|53 : aaGG-AATT---ATGAGA-TT-GA-T-CACTG-TT-CGTT---AT-C
gi|54 : CCG-GT-CACACTCG---CCGTGA-GCT-CATA----G-TC
gi|6 : TGAATC-GA-GGCA-GC-CT-A-CTTA-CAA--AC--AAGTT--G-TTGTT-------GCA--GATG--CT-TCAT-A--AG-TCA-CGTTTAAGGGCAG-CAATT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--ACG--A-T-TTA-GTTTGCC-AGT-ATG-----G-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ATGCG----TT
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagttttT--GT---G-A-CCG-G--TC---AACAG-GGGATACATACTCC-T-----AGAC-ACCTGA--TCCCACCTC---T-----GGTGTGCC---C-----AGG-GGTCCG-TG-T-TTGCCG-A-ACTCT-TGGT-TTTTGTATTCTAATT-GGG-ACTT---ATGAGA-TT-GA-T-GACTG-TT-CGTT---GT-CTTTA-C---ATT--GTG-ATC---T-TTCgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaactcttggtttttgtattctaattgggacttatgagattgatgactgttcgttgtctttacattgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgtT-CTTGG-T---TTTT-GTA-TTC---TAATTG-GGACTTATGAGATTGATGACTGTTCGTTGTCTTTACATTGTGATC---TT---TCTTTGTA---CTAAGTTT--AATTAtttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|8 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgttgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaacTGATTC-GA-GGCA-AGACT-A-CTTA-CAA--AC--AACTT--G-TCGCA-------G----G--GATTT-TGAA-A--AG-TTA-CGTTTAAAGGCAT-TATTT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--ACG--A-TCT-A-CTATGCC-CAT-ACA-----A-ACTG-CCAA-TGAGTCAAATGC-TG-TCT-G-ACATG----TTT-CATA-GCA-A-TTATT--A-A--G--CTGT-T-T--T--TCA-TACAC-T-G--AATTTTTTGACTG-CATA-TTATT-CC--AT----T-TACTTGATC--AAG-A--CAAT-GGGCTCAA--GGCGGGT--GT---G-A-CCT-C--TC---GACAG-GGTATGCTTACGCC-TTT--TAGGC-ACCTGA--TCCCAACTC---T-----GGTATGCC---C-----AGG-GGTCTG-TG-T-TTGTCT-A-ACTCT-T-G--TTTTGTATTCTATGA-AGG-ACTT---ACGAAA-TT-GA-T-CACTG-TT-CATT---AT-GTTTG-CCCTTTC--ATA-CTC---TGaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|9 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagatttTAAATC-GAAGGCA-AG--T-A-CTTA-CAG--AC--AAGTT--GTT-GCTGTAG---G----G--G--TT-TCAT-T--TG-CCATTGTTTAAatgccatagaagtacat
gi|9 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgtttGTAAAGGCAAAAG--ATACGAACAGTG-TCAAATCTCCGTAAGTCGAAACATGAGAACCATACAAAAACTAAGTAG-TTGG-AAAGTGACACGGACCCCTGGACACAACCA--GAGG-TGGGATCAAGGTACCTAGAGGGAGTA---AGCTTCTCCT--GTT-ACCG-GTTCACACCCGGTCCCGTGA-GGCACATA----G-TCT-TGAAATCAG-GGTAAACG-GGACAATCCCGTAGTCAAATCATGGGTGTGAAAAAAACGGCTTAAACAATGGCAAATGgccgtttttttcacacccatgatttgactacgggattgtcccgtttaccctgatttcaagactatgtgcctcacgggaccgggtgtgaaccggtaacaggagaagcttactccctctaggtaccttgatcccacctctggttgtgtccaggggtccgtgtcactttccaactacttagtttttgtatggttctcatgtttcgacttacggagatttgacactgttcgtatcttttgcctttactagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TCTTTCAAACGACGAAATTCTACAAAATCACGCTTCAGCTTTAATCACATTTAATATCCCAGTCAATGGGACGGACGAATATGAATTATCGTACCTATGCTGGATTCATAAAAAAACCCTTACAAAGATACATTGCTGAGTCTAGTAAATGTTCCACCAAACCCCTGTCGTTACTCTTCACGAAAATATTGACTGCTGTCAAGGATCAACCTTCAGACGTATTGTGAAAGTACATATGCCAGAAGTGGTAATGTGGATTCTAAAAGATTCTTCTAAACAATTCTAGTGAATTTGAAATCCCAGAACCTTTCTCATATCAACAACATCGAATCATGTGATTTTTCAAAAAATTCATAACCATTCCGCACGATGAATTATAGGTAAGACTTTGTAAAGTTACAAACGATTGCTTCTTTAACAAAAATGGAAAGGAAATATTCATATCTAATGATCAGCCATTCACAAAATTACTCTGATTCTAAACACAAGTACTCCGAAGTTGATATCAAAGCAATGCTGGAGTTCCTCATTGACAATATCTTTGTAGTTTTTGGCAATCAGGTCTTCCAACATTCTGTTGTAATTCCAATTGTCACGAATTGTGTTCCTTTGTTAGCGGACCTATTTTTATATTCTAATGAGGCAGAATGCATTCAAAAGCTTCTACATGAAAAGAAGAAATCTGTAGCGGGGACCTTTAATTCGACATATTGACGAGGTTTAGTATTAATGGTTTTCATGCATATGTCGATTTAATCGAAACGAACTAGAAATAAAGGACACCACATAATAACCCATGCCTGCTTCAAACTTGGATATTTTATTGAACATTGACATTAACGGCAAACTATCTACTTAACGTTATGACAAATGGGACGATTTTA
Unaligned ( gi|7 ): ATTAAAAAGAACTTTATACCTTGTCAGAATGGATAAAAAGTATAAGAAGAATATTAAAATCCCGTATTACACAAATGAAAACAAAAGTGTGTATCACCTAGCCTTCTGTGTTTCGAAAACCAGAAGTGATCAAAGAATTAGATAGGATACATGAGAAATATGTTTTGGTTCCAGCTGGCAAAGTCTGTAACAACATTGTCTTCGTCTGTAAGGCTCATTATTACAACTGTATTTTGAACGAACTTGGTATTAACTCAACATTTGGTAATCGTACTTACACTCCAACTGCTCTTTCAAAAGAGGAAAATCTTCAAAATCGTGTTTCAGTTTTATACACTTTTAATATCCTAATCAATGGGACGGATGTTACCGTACCTATACTGGATTCCAAAACTTTGCAAAAAAAAAAACCCAAAAACAAAAACAAAAAAAAACCTAGCAAAGACACATTGCTGGATCAAGTAAATGTTCCATCAAGCCCCTGTCTTTACTCCTCACGAAAATTATTTACACTTGTGAAGGAGCATTGCTTTAGACGTATTGTTCAACAGCATATATGCAAGAAGTGGGGTAAATCAAATTTGGATTC
Unaligned ( gi|16 ): GATATATCAAAAAACTCTACACTTTAACCCACCATTTCGCACGATAAATTGGAAAAGACAACGACTTACGAGAAGTTTGTTTCGTTAACAATAAATGGAAAAGGGAATATTCTTATCTAGCGATCTGTCATTTCAAAAAATTATTCTGTTAAAACTCGCACTTCACATTCTACCCATCACAAGTACTGTATACTCTGAAGTTGAATATTTAAGCAATGCTGGCTTCCTCACTTTGTGAATGCGAGAAAATATCAATTTGCAATGTTCCTGTGAACCACAAGTTGTTCACCAATTCTCCATTTTCTGTATTCCATTTTTGATTGGACGTTCTCATTTTCTTA
Unaligned ( gi|23 ): CTTCCACATCTGCCTTTCTTATTTAGTGTTATAGTTGATCATAAATGTTAATCGGCAAACACGGTCCAAATTTCTAACCTTTCTAACAAATGGGATAATTTCTAAATTCTCTATAGTCAATCTTCCCAGCATTTTATTTTGCTGCTACTCGGTGTTTTTCTCACAACTGGATTCAAAGTAGCAAGAGTTTCAACGTATTACATTTTTAAAAATAAAAAAAATCGAGGACAGGCTAATGACAAAGCAATTAATGTTAC
Unaligned ( gi|24 ): ATTTTATATTGACAAAGGGATCCCCACTCTTAAAAATATTGGACAGCACTACCCTTGCAATATGCACTCTCTATCAAGTCTGTGTCTTTCTTGTACCCAAGTTTTCATCTCAAATATTCCTTCTCCAATAGAGGTACAATGATAATTAGGCAGGAGTTGCAGAGGAACAGAATGTCGAAAGGACAGACAGACAGACACAGCGCTGTTATGTCATGATACGCTCGCTTTTTATGTCGGGCATATAAAAAGT
Unaligned ( gi|25 ): AAAACAAAAAATGCATATTATCTACCAACTATGTTTAACCAACAAGAAGCGTATGAACCGAATTAGATAGGGAGTTTGAGGAATAAAAATATAGGCTCCAAGATGATAAAAGCTTGTACATATTGTCTTTTGTTTCTAAGGCTCATTAAAACAATAATTTTACAGGGAATTTGGATTTACGCCAACTTTAGTAATTCCAGTTTTACTTAAACTAAGTTCCTTCTCCAAAAGATGAAAAT
Unaligned ( gi|31 ): TTGGATGCTATATGAATACTCTGATACAATGGCGCAAGCTAGCAACCACTGTAATGACAAACATGGACATTTCATCTTCTCCAGCGTCAAGCTACCCATACTTATGAAATATTTATGAAACAAATCCATTATTAATTTGCATATGATATCTTATTCGATACGCAAGACGTGTCC
Unaligned ( gi|33 ): TGTTCCTTTTGGTTGCTGACCTGTTTTCGTATTCTTACGAGGCAGAATTTATTCAAAAGCTTCTTCAAGAGAAGAAAAAAATTTCTAACTGTGGCCTTTAACTCGACAGTCAGATATATTGATGACGTTTTATCTACTGAATATAATTATTTGCTTTTAT
Unaligned ( gi|36 ): CCTGTACGAGTATGGGATATTCTAAATGTTAAAAAAGCAGATGTTCTTTTCACTCTTTACTACAATTTATGGATACCAAGGTTACATTATAGTTCCAGATGTGACCAAAAAACTATCATGGCGACGATTGTT
Unaligned ( gi|39 ): AATGTTAAAATAAAGCAGATGTTCTTTTCACTCTTTACTACATTTATGATACAGGTTACAGTTATAGTTCCAGATGTGAACCAAAACTATCATGGCGACGATT
Unaligned ( gi|40 ): CCTTTTTGTCGTAATCTGATGAGGTAGAATTGAATCAAAAGCTTTACACCAGAAGCAGAAAATATCTTATCTTCGCCTTCATACATCGAC
Unaligned ( gi|41 ): AGGAGGAGTTGCAAAGACAAAGTGAAACAGACAGACAACAGCAGTATATAGCATAATACACCAGCATTTTTATACGGGCGTATAAAATTT
Unaligned ( gi|43 ): TTCTTACGAGGCAGAATTTTCTTAATTAAAAAAGTCTTCTACAGAAGAGGAAGAGAGAAATCTAGCTATATGCTTTT
Unaligned ( gi|45 ): AAACACTCTGATTCCAAACAGATATTCAGAGTAAAGCTGATATCAAACAGATTTTGGAGTTCTTCATT
Unaligned ( gi|50 ): TCGTACCTATACTTCATAAAAACTCTTACAAAGATACATTTCCAAG
Alignments
lowQualScore : 777777777777777777777 111 1111 1 1111111111 2222 111 111 2222 111 111 11 22222222 1111 11 222222222 11 66666666666 6666666666 11 111 11 111 1 33 222 11 2 1 1 111 1 1 2222 1 111111 111 1 222 11 11
lowQualScore : 2 2 2 2 2 2 2 33 33 555555555555555555555 33 77 2 6666 2 2 0 1 2 2 2 2 4444 88888888 5555 5555 66 33 4 999 2 2 2 2 6666666 2 2 2 44 2 2 2 4444 2 44 2 2 0 55 2 22 5555 2 0 44 7777 1 444 22 4444 2 1 2 33 2 55 9999999 66 0000000000 33 66 444 2 2 2 33 5555 2 2 33 2 22 333 55555 0 333 55555 2 2 333 2 2 2222 0 4 33 2 444 2 2 2 5 2 2 888 2 2 2 111 000 4 666 3 8 3 0 4444 55 1 22 444 0 444 1 9999 3 88 6 33333333 7 6666 111 88 666666666 88 55555555555 1 1 5555555555 7 999999 6 5 5 33 000 5 5 5 6 6 8 11 2 999 3 00 6 333 88 6 0 0 2 777 3 0 0 1111 0 555555 666 3 6 000 1 1 88 77
lowQualScore : . . . . . . . .. .. ..................... .. .. . .... . . . . . . . . .... ........ .... .... .. .. . ... . . . . ....... . . . .. . . . .... . .. . . . .. . .. .... . . .. .... . ... .. .... . . . .. . .. ....... .. .......... .. .. ... . . . .. .... . . .. . .. ... ..... . ... ..... . . ... . . .... . . .. . ... . . . . . . ... . . . ... ... . ... . . . . .... .. . .. ... . ... . .... . .. . ........ . .... ... .. ......... .. ........... . . .......... . ...... . . . .. ... . . . . . . .. . ... . .. . ... .. . . . . ... . . . .... . ...... ... . . ... . . .. ..
lowQualScore : 9 9 9 9 9 9 9 99 99 777777777777777777777 77 33 7 7777 9 9 1 0 9 9 9 9 9999 55555555 0000 0000 55 22 7 222 4 5 7 4 2222222 2 2 2 66 2 2 2 5555 2 22 1 1 1 88 1 99 7777 0 0 55 4444 9 111 99 4444 2 0 2 99 5 99 5555555 99 5555555555 44 55 444 5 5 5 44 9999 5 4 11 1 88 777 33333 2 777 33333 1 1 111 2 2 1111 1 3 22 5 111 4 4 4 0 5 7 333 5 5 7 888 777 0 444 9 0 7 7 3333 88 0 22 000 2 000 0 0000 7 33 7 00000000 3 7777 333 33 777777777 33 77777777777 0 0 3333333333 3 666666 7 7 7 66 000 7 7 7 7 7 0 00 5 000 3 33 7 333 33 7 0 0 5 555 2 0 0 2222 0 777777 777 3 7 555 0 0 55 55
consensus : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--ACG--A-T-T-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--G--C-GT-T-T--T--T-A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAAC---C-AAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
Reference ( family-7 ) : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--ACG--A-T-T-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--G--C-GT-T-T--T--T-A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAA----CCAAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGACCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
gi|10 : TGATTC-GA-GGCA-AG-TTGA-CTTA-CAA--AC--AAGTT--G-T--TTATCACAGG----G--G--TT-TCGA-C--AG-TCA-CGTTTAATGGCAG-CATTT-C-GACAAGA--TTCA--------ATGAT------------------------T-T-A-ATTTGCC-CAT-ACA-----ATTCTGTTCATCTGGTCCAAACACTTGCTCT-G-ACATG----TTTACATA-GCA-A-TTGTT--A-G--GA-C-GT-T-T--T--TCATTACAC-T-G--A---TTCTGAGTA-TGGACTTACTCCC--GT----C-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GACGGGT--G----G-ACCCG-G--TC---AACA--GGGATGCTTACTCCTTCC--GAGG-------------CATCTC---T-----GGTGTGTC---C-----AAC-GGTCCGTTG-TATTGCCC-A-AC-CTT-GGTTTAGTATTCTATTT-TGGCATTT---ACGAGA-TTCGATT-TACGT-TT-CGTT---ATATTTTG-CCT-TTT--TCA-TTT---TG
gi|11 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttt--------ATGGTT----G----TTATA--ACGTGG-T-C-A--TTCACC-AGT-ACA-----A-CC-G-CCAT-TGGGTCAAG-GCTTG-TCTAA-ACGTA-----TT-CGTA-GGA-A-TTTCA--A-G--C--C-GT-T-C--T--T-A-TACAC-C-G--A---TTTCGACTA-CGGA-TTAAT-CC--AT----T-TATCT-ACCAAAAA-A--CAAT-GGGATC-C--GGCAGAT--TT---G-A-CAG-G--TT---AAAAG-GGTATGCTTACT-C-TCC--TATGT-ATCTGA--TTCCACCTC---T-----GGTATATCAAGCTTTTAAGG-GGTCCG-TGTT-TTGCCC-A-ACTTTT-GT-----TA-TCTGTTTGGGG-ACCA---ATGAG--CC-GG-T-CACTG-TCACATTTTAAT-CTTTG-C---CTT--ataaagacgtttctaattttttgtaaa
gi|12 : tttaTGAATC-GA-GACATGT-TT-A-CTTA--AG--AC--AAGTT----T-GTT-------GTGCAG--GGTTT-TCAA-ttcataactaaattttacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|13 : atgtttatattcttgtgacgcagaattaattcagaagcttctacatgagataactcgacaattagatacatgtactaacgaactagaaatagaggacaccacagaggtctttccatgtctcgttccgtactgatatttttatagaacattgacattacgccaaacctaacttactcaactttataacaaacgggacggatttcagcttctccatgtcaactccccaatatttatgtagcaagtatccatcatcacatgtataatgggtgtgtatgtctctcaacttattcgatacgcaagcaagcttgttctgctatgatcaggttttA-A--TTAT--------ATGGTC----G----TTATA--ACG--A-T-TTA-GTTTGCA-AAT-ACA-----A-CTTA-CGAT-TTGGTCAAATG--------------------TTT-CACA-CTA-A-TTCTT--A-A--G--C-TT-T-TCTT--T-A-AACAT-T-G--A---TTTTTACTA-CGAA-TTACT-TC--ATATACTGTACCTGATC--ACA-A--TAAA-GGGCCCGT--GGAGGGT--GT---G-A-CCG-G--TT---AACAG-GGTATGATTGCTCC-TCC--TGGGC-ACCCGA--TCCCACCTC----------------------------A-GACTCG-TG-T-TTGCCC-A-ACCCTT-TAATTTGTATTCCGAAT-AAG-ATTT---ATGAGA-CC-GG-T--ACTG-AT-CGTT---AC-CTTCA-C---C-----TA-TTC---
gi|14 : taggctgtttaagAATC-GA-GGCA-GG-CT-A-CCGA-CAA--AC--AAGTTC-A-T-GTTACAG---G----G--G--TT-CCAA-C--CG-TCT-CGTTTGAAGTCGG-CATTT-C-A-CAG-----TCTATAGATGCATGGTC----G----TTATA--ACG--A-TCT-A-GAGTGCC-A-----------A-CCTG-TCGT-TGGGTCAAATGA-TG-TTC-G-ACATG----TAT-CATA-CTA-A-TTGTT--A-G--GT-C-GT-TCT--T--T-A-TACAC-------------TGCCTA-CAGA-TTATT-CG--AT----T-T-CCTTATC--AAA-ATTTAA---GGCTAAC--TGCGGGT--GT---A-A-CCG-G--TCTTGAACAG-GGGAT-TTTAC-----CC--AAGGT-ACTTGA--TCCCATCTC---T-----GGTATATC---C-----AGA-GGTCCG-TG-T-TTGACC-A-TCTATT-CCTTATCTATTatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|14 : agcctgttctatgcacggccagttttttCA-----A-CCTG-CTAT-TGGGTCAAATtgacccaatagcaggttg
gi|15 : agcctgttctatgcacggccagttttttaatcgaggcaggctaccgacaaacaagttcatgttacaggggttccaaccgtctcgtttgaagtcggcatttcacagtctatagatgcatggtcgttataacgatctagagtgccaacctgtcgttgggtcaaatgatgttcgacatgtatcatactaattgttaggtcgttctttatacactgcctacagattattcgatttccttatcaaaatttaaggctaactgcgggtgtaaccggtcttgaacaggggattttacccaaggtacttgatcccatctctggtatatccagaggtccgtgtttgaccatctattccttatct-A--TTCT--------ATGGTC----G----TTATA--ACA--A-T-T-AAGCTTACC-AAT-ATG-----A-CCTA-TCAT-TGAGTCAAATGC-TG-TCT-G-ATATG----TTT-CATA-GCA-A-ATGTA--A-A--G--CCGT-T-T--T--TCA-CACAC-T-G--A---TTT-GACTA-CGGA-CTGTT-CC--GT----T--ACCTGATC--AAG-A--CTAT-GAGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---AACAG-GGGATGCTTCTCCC-TCC--TAGGCCACCTGG--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-A-TTGCCC-A-ACTCTT-GTTTTTGTATTCTATTT-AGG-ACTT---ACGAAA-TT-GA-T-CACTGTTT-CGTT---AT-CTTTG-C---TTTACATG-TTT---TG-TCA-GAAC
gi|17 : TGTATC-GA-G-CA-GG-CT-AACTTA-CAAGGAC--ACGTT--CCT-GTTTGCAG--G----G--G--TT-TCAAAC--AG-TCA-CATT-AAAGACAGGCATTTTC-G-TAA-AAATTAT--------ATGGTC----T----GTATA--GCG--A-T-TTA-GTTTACC-CATGATG-----A-C-TC-CCAT-CGAGTCAAATGC-TA-TCT-GAATGTG----TTT-CATA-GCA-A-TTGTT--A-A--GC-C-GT-T-T--TCCC-A-TACACTT-G--A----TTTGACAA-CAGA-cactctgattgcccacacaagtac
gi|18 : gtcaaacttctctatatttaatgtcgcaatagtttcaccatcaaacctgctgtggtgtgtatgtctctcaacgttattcaatacaaaaattgttctgccgtatgatcagatttAATC-AC-AGCA-GG-CT-G-CTGT-CAA--TC--ATTTT--GAT-GCTTCAG---G----A--G--TT-TCAA-C--AT-TGC-CGTTTAAAGTCAG-TAGTT-T-G-CAA-A--TTCT--------GTGGTT----G----TTATA--TTG--A-T-TTA-GTTTGCC-AGT-GCA-----A-CCTG-CCAT-TGAGTCAAATAC-AG-TTT-G-GCATG----TTT-AATA-CCG-ATTTCCT--A-G--GT-C-AT-T-T--TG-T-A-AACAC-T-G--A---TTTCGACTA-AGAA-TTA---AA--GT----T-TACCCAATC--AAGTA--TA---GATCTCAT--GGCGGAT--
gi|19 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttTGAATC-GA-GGCA-AG-CT-A-CTTA-CAG--AC--AAGTT--G-TTGTT-------GCAGGG--G--TT-TCAA-C--AG-TCA-CGTTTAAAGGCAG-CATTT-C-G-TAA-A--TACT--------ATGGTC----G----TTATA--ACT--ATT-T-A-GTTTACC-AAT-ATG-----A-CCTA-CCAT-TGAGTCAAATGC-TG-TCT-G-ATGTG----TTT-CATAGCCA-T-TTGTTGGA-G--GTCC-GT-G-T--TGCC-C-TACAC-TCG--A---TTTT
gi|2 : atatttatgtagcaatattccatcatcaactgcatatggtgtgtatacatgtctcttaacttattcgatacgcaagagcttgttctgcgtatgatcagatttTGAATCCGA-GACA-AG-CT-A-CTTATCAG--ACGAAAGTTTCG---GTT-------GCAGAG--G--TTATCAA-A--GGGTCA-CGGT-AAAGCCAG--ATTT-CCG-TAA-----TCT--------ATGGTCCTATA----TTATA--ACA--A-T-TTA-GTTGACTTATT-ATG-----A-CCTA-CAAT-TGA-TCAAATGC-TG-T-T-G-A--TG----GTT-CATA-ACC-A-TTGTT--A-A--G--C-CT-T-T--T--C-A-C-CAA-T-GTGA---CTTTGACTA-CG-A-TT--T-CC--GT----G--ACCTGATCTAAGG-A--CTAT-GG-CT-AC--GG-GGGTAGGT---GTA-CAG-GGGTC---AACCA-GGTCTGCTTAC-----CC--TAGGC-ACCTGA--CCCCACTCG---TAACAGGATG-GTC---C-----AGGTGTTCCG-TA-A-TGACTC-A-ATTCTT-G--TTTGTATTATATTT-AGG-AC-T---GC-AGACTT-GA-TCCACTG-TT-C-TTAA-AT-CTT-G-C----CT--ACA-TTC---TGCTC
gi|20 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttcttAATC-GA-AACA-GG-CT-A-CTTA-CAA--AA--AAGTT--A-T-TTTTGCAG--G----G--A--TT-TCAA-C--AG-TCG-AATTTAAAGGCAG-CATGT-C-G-TAA-A--TTCT--------TTGGTC----G----TTGTA--ACG--A-T------TTTGCatattggatatactttaggaa
gi|21 : actacgatctttatagatgaaatattaacgggacgatttgagcttctccatcgtcaacttcccatatttatgtagcaaatgtagcaatattatattccatcatcacctgcatattatgttgtgtaggtctctcaacttattcgatacgcagagcttgttctgcgtatgatcagtttttt-ACA-----A-CCTG-CCAT-TGGGTCAAATAA-TG-TCT-G-ACGTG----TTT-CTTG-GCT-A-TTCTT--AAG--G--T-GT-TCT--T--T-G-TACAC-A-T--A---TTTTGACGA-CGGA-TTACT-CC--GT----T-TACCTGATC--AGG-A--CTAT-GGGCTCAC--AACAGGT--AT---G-A-CCG-G--TC---TACAG-GGGATGCTTACTCC-TCT--TAGGC-ACCCGA--TCTCCCCTC---T-----GGTGAGTC---C-----AGG-GGTCAT-TG-T-TTGACC-A-ACTCTT------TGTTTTCT----------CTT---ACGAGA-TT-GA-T-CACTA-TT-CGTT---AT-TGTCG-C---CTT--ttagaattat
gi|22 : cccaaT-T-TA-T--T-A-TATAT-A-G--A---TTT-GTCAA-AGGA-TTACC-CCC-GT----TCTAACTGATC--AA--A--CAATAGGGCTTATTTGAAGGGT--GT---G-A-CCGCG--TC---AGCAG-GGGG-GTTAATTAC-TCCAATAAGT-ACCTTACCTCCCA-------T-----GATACAAT---C-----AGG-GGTACG-TG-G-TCTCCG-ATATACTT-AATCTGTTGTT-CGT----GA-ACTT---ACAAGA-AT-GA-T-CTCTG-TT-CATT---AT-TTTTG-CA--TTT--TCA-TTC---Tttca
gi|22 : aaggtattctta---TGTTCGTGAACTTACAAGAATGATCTCTGTTCATTATTTTTGCATTTTCATT---CTACATCTTTCAATCATTAATTGT--CATacatctttcaatcattaattgtcatattaca
gi|26 : aaggtattcttatttattatatatagatttgtcaaaggattacccccgttctaactgatcaaacaatagggcttatttgaagggtgtgaccgcgtcagcaggggggttaattactccaataagtaccttacctcccatgatacaatcaggggtacgtggtctccgatatacttaatctgt-------G----G--G--TC-TCAA-C--AG-TCT-CGTTTGAAGTCCG-TATTT-T-G-CAA-A--TTCT--------ATGGTC----GTTACTTATA--ACG--A-TCT-A-GTTTGCC-AAT-ATGTACAAA-TTTG-GCGT-TGGGTCAAATGC-TA-TCT-A-ACGTG----TTT-CATA-CCA-A-TTGGT--A-G--GT-C-GTGC-T--T--T-A-TACAT-T-G--A---TTCTGACCA-TGGA-TGACT-TC--GT----T-TACC-------------------AGGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGGTGTTTACTCC-TCC--TAAGC-Aattaca
gi|27 : acagTTCAAAATCAG-CATTT-T-A-CAA-A--TTCT--------ATGGTA----G----TTATATAGCG--A-TCT-A-GTCTGCC-AGT-A-G-----A-ACTG-CTAT--GGGTCAAATG-----TAT-G-ACATG----TTT-CATT-CCA-A-TT-------------C-GT-TAT--T--T-A-CACAC-T------------GATTATCGAG-TT--------GT------------------AG---------GGGCTCAC--GGCGGAT--AT---G-A-CCG-G--TT---GACAG-GGAATTCATACTCT-TCC--AATGC-ACCTGA--TCCCACCTC---A-----GG-GTGTC---C-----GGG-GGTCCG-TG-T-TTACC
gi|28 : AATAATAAATCAATCAGGAGGGTATATTTG-AATAAAATTG-GCAATTGTAGA--AATTG-------CTTTACTGAAGTAATAGTGTTACATTTCTAAAATATGCGAAACTGCATT-ATGTAAAGGCAAA-TACAACGATCAGTGATCAA-TCTC-GTAAGTCCCAA-AT--AGAA---TAC-AAA-AC-A-AG-AG-TTGG-GCAA--ACACGGACCCCTGGACA
gi|29 : taGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGATGTTTACTCC-TCC--TAAGC-ACCTGA--TTACGCCGC---T-----GGTATATC---C-----AGG-GACCAG-TT-T-TTTTCCAA-ATTCTT-A-ATTTGTATTCCATAT-GTG-AGTT---ATAATA-TT-GA-T-CACTG-CT-CGTT---AT-CTTCG-t
gi|3 : TGCACC-AA-GGGA-GG-TT-A-CTTA-CAA--AC--AAG--------------------------G--TT-TCAA-C--AG-TCG-CGTCTAACGTCAG-CATTT-T-G-CAA-A--TTTT--------ATGGTC----G------ATA-----------T-A-GTTTGCG-GGA-ATG-----G-CCTA-CCAT-TGGGTCAAATGT-TG-TCT-G-ACGTG----TTT-TATA-TCA-----------------------C-T--T--C-A-TACAC-A-G--A---TTTTGACTA-CGTA-TTACT-CC--GT----T-TACCTGATC--AAT-A--CAAT-GGGATCAC--GGCGGGT--GT---G-A-AAG-G--GC---AACAG-GGGATGTTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTTTGTC---C-----AGG-GATCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCTATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG-T---TTT--GTA-TTC---TGTTTG-GGACTTACGAGCTTGATCGATGTTCGTTATCCTCGCATTTTCATCCATATACATATTTGCATT-TTGAATGT--TATTATGTACAAATAACAAATCTATAA--AGGTTAT-TA-ATCATAACACTGTGTAGACATAAT--AATGGT--CAATA--TA--AAAG------------AATTATAAAAC---CCAAA-TACATTTGTGTAAAGGCAAA-T-------ACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACA-AACCA--GAGG-TGGGATCC-GGTGCCTAGGAGGAATA---AGCATCCCCT--GTTGACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-T-GA-TCAG-G-TAAACG-GAACAAT-CCGTAGTCAAATCA---GTGTGTGAATAACGGCCT--ATAATG--AAATGTTATTGCAGATGCCAGatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|30 : aTAAATATTTTTATT-CGGAGTGTGACATTATGTTTGAA---------GATAA--AG-TCATGTACGTC-TA-CA---TGCACATGTAATTCAATTGTGCCAATCTTTA--AAAGT----------CAGTTTTAAAA----------TACATTTATGTAAAGGTAAA-GATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTtatgcttgtataaaaagtctatataatgaaattataaatgtgaaaatatgtcattgatacatgttt
gi|32 : AAGC-ACCTAA--TCCCACCTC---T-----GGTGTATC---C-----AGG-AGTCCA-TG----------------------TTTGTATTCCGTCT-AGG-ACTTGAAACGTAT-TT-GA-TGCATTG-aat
gi|32 : --TAAGC-ACCTAA--TCC-ACCTC---T-----GGTGTATC---C-----AGG-AGTCC-----------------------ATTTTTGTATTCCGTCT-AGG-ACTT-----GAAA-AT-GA-aaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|34 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagatt----TTT-CATA-CGA-A-TTGTTGGA-G--G--C-TT-C-T--T--T-A-TAC
gi|35 : tatctagtcagattttttgtcaagaattctataggtaatgaaataaaggtctatcatttgcaaaacacaagctttcaactggccgtccccgaaatgtagctggtgatcgaa-TCC--TAA---ACTTG---TCTCACATCATTT-----GGTATACC---A-----AGG-AGTCTG-TG-T-TTGCTC-A-ACTCTT-GTTTATGTATCCTGTTT-TGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--
gi|37 : tgatgaaCAACCGAGGAGGGTGGGATTGTGGTGTCTAGGGG-AGTATAAAGCATCCCTTTAGTTTGCTGCGT-CACACT-G---CCG-GATGCC-CATATAGCGCTCTATGGG-TCACTG-TAAAAGAGAACAATCACGTAGTCAAcaactacgcggg
gi|38 : -A-TTGTT--C-G--T--T-AT-T-T--T--T-G-TGTTC-T-G-------TTTGACTA-CGGA-TTGTT-CCTTGT----T-AACTTGACT--AAT-A--TGAG-GGACT-----GGAGTGTTAGTGAAG-A-CCA-G-------AACAACGAGA-GCTAATTCA-T-C--TAGGA-ACAGGA--TCCC
gi|4 : AATC-AA-GACA-GG-CT-A-CTGA-CGA--AC--AAGTT--G---GT----------------G--CT-ACAA-GGGAG-TCA------ATAGTCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----ATATA--ACG--A-T-CCA-GTTTGCC-AGT-ATA-----A-CATG-CCAG-TGGATCAAATGC-CG-TTT-G-ACAAGACAGTTT-CATA-CCA-A-TTGCT--A-G--G--CCGT-TCT--T--T-A-TACAC-A-G--A---TTTTCACTA-C----------------------TACCTGATA--AAG-T--TTAA-GGATTCAC--AGTGGAT--GT---G-A-CCG-G--CG---GACAG-GGGATGCTTACTCC-TGC--TATGT-ATCTTA--TCTCACCTC---T-----GGTATATT---C-----AGA-GAGCTA-TG-T-TAGCCC-A-ACTCTA-A--TTTGTATTCCGTAT-AGA-AATT-----GAGA-TC-GA-T-CACTG-TT-CGTT---AT-CTTCATC---TTT--ATAGTGCGAGTATTCT-GGACGTACGgaa
gi|42 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaA--TCATGCCTC---T-----GGTATATT---A-----AGG-GGACTG-TG-T-TTGCCC-A-TCTCTT-A-TATTATATTCCGTAT-
gi|44 : cttacAGTGATCAA-TCTT-GTAATTCCT----TTGAGAA---TACAAAATGT-AGAG-AA-T--G-TCAA--ACAAGGATCCCGGGAcaatcggagcgtcac
gi|46 : AAATTC-TG-TCT-G---GTG----TAT-TATA-GTGGA-TTGTT--A-GCCG--T-GT-T-T--T--C-A-TA-AT-T-G--A----TTTGACAA-TGGA-TTaaaac
gi|47 : TGTAAAGGCAAA-TATAACGAATAGTGATCAA-TCTT-GTCAGGCCTAC-AT--AGAA---TACAAAA-AC-A-
gi|48 : TC-GTAGTCCCTAA-AT--C-AA---TATAAAA-AT-A-AG-AGATTGACGCAA--ACATTGATCCCTGGAAAC
gi|49 : taCTG---TCCCACCTC---T-----GGTATGTC---C-----A-G-AGTCTG-TG-T-TTGCCG-T-ATTCTC--TATTTATAT
gi|5 : cgTAAATC-GA-GACA-GG-CT-A-CTTA-CAA--AC--AAGCT--GAT-GTT-------GCAGAG--G--TT-TCAA-G--AG-ACA-CTTTTCAAATCAG-CTTTT-C-G-TAA-A--TTCT--------ATGGTC----G----TTATATAACG--A-TCT-A-ATTTGCA-AAT-ACA-----G-CCTT-TCAT-TGGGTCAAATGT-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--GC-C-GT-TAT--T--T-A-TACA
gi|51 : cacatttctttgattgattttatgaaacactgatctctaaacagtcggaattcccatgggcatgaattgtgctactttgttagctgacctgttcttatattcttacaaggcaaattttattcaaaagtttctacatgagaagaaaaaatctttagctgtggtttttaattcgatagttggatatatcgatatcgttttatctattgatagctattattttcatttatatgtcgattcgttatatcccattgaacaacagacaccacagagtcatcgtacttggatattttactgaacgcagacactatcggcaaactaacaactcaaactttatgacaaacgggacgatttcagcttctccactgtcaacttcccatatgtacaaatgtatgtagcaacatcccatcagcacttgtatatggtgtttattcgatatgaaagagcttgttctgtgaataatcagtttt--T--T-A-TACGC-T-G--A---TTTTGACTA-CATA-TTACT-CC--GT----T-CAGCTAATC--t
gi|52 : TT---AAGAGA-TT-GA-T-CACTG-TT-CATT---AT-CTTCA-C---TTT--
gi|53 : aaGG-AATT---ATGAGA-TT-GA-T-CACTG-TT-CGTT---AT-C
gi|54 : CCG-GT-CACACTCG---CCGTGA-GCT-CATA----G-TC
gi|6 : TGAATC-GA-GGCA-GC-CT-A-CTTA-CAA--AC--AAGTT--G-TTGTT-------GCA--GATG--CT-TCAT-A--AG-TCA-CGTTTAAGGGCAG-CAATT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--ACG--ATT-T-A-GTTTGCC-AGT-ATG-----G-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ATGCG----TT
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagttttT--GT---G-A-CCG-G--TC---AACAG-GGGATACATACTCC-T-----AGAC-ACCTGA--TCCCACCTC---T-----GGTGTGCC---C-----AGG-GGTCCG-TG-T-TTGCCG-A-ACTCTTGGTTTTTGTATTCTAATT-GGG-ACTT---ATGAGA-TT-GA-T-GACTG-TT-CGTT---GT-CTTTA-C---ATT--GTG-ATC---T-TTCgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaactcttggtttttgtattctaattgggacttatgagattgatgactgttcgttgtctttacattgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgtT-CTTGG-T---TTTT-GTA-TTC---TAATTG-GGACTTATGAGATTGATGACTGTTCGTTGTCTTTACATTGTGATC---TT---TCTTTGTA---CTAAGTTT--AATTAtttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|8 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgttgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaacTGATTC-GA-GGCA-AGACT-A-CTTA-CAA--AC--AACTT--G-TCGCA-------G----G--GATTT-TGAA-A--AG-TTA-CGTTTAAAGGCAT-TATTT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--ACG--A-TCT-A-CTATGCC-CAT-ACA-----A-ACTG-CCAA-TGAGTCAAATGC-TG-TCT-G-ACATG----TTT-CATA-GCA-A-TTATT--A-A--G--CTGT-T-T--T--TCA-TACAC-T-G--AATTTTTTGACTG-CATA-TTATT-CC--AT----T-TACTTGATC--AAG-A--CAAT-GGGCTCAA--GGCGGGT--GT---G-A-CCT-C--TC---GACAG-GGTATGCTTACGCC-TTT--TAGGC-ACCTGA--TCCCAACTC---T-----GGTATGCC---C-----AGG-GGTCTG-TG-T-TTGTCT-A-ACTCTT-G-TTTTGTATTCTATGA-AGG-ACTT---ACGAAA-TT-GA-T-CACTG-TT-CATT---AT-GTTTG-CCCTTTC--ATA-CTC---TGaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|9 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagatttTAAATC-GAAGGCA-AG--T-A-CTTA-CAG--AC--AAGTT--GTT-GCTGTAG---G----G--G--TT-TCAT-T--TG-CCATTGTTTAAatgccatagaagtacat
gi|9 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgtttGTAAAGGCAAAAGATA-CGAACAGTG-TCAAATCTCCGTAAGTCGAAACATG-AGAACCATACAAAA-ACTA-AGTAG-TTGG-AAAGTGACACGGACCCCTGGACACAACCA--GAGG-TGGGATCAAGGTACCTAGAGGGAGTA---AGCTTCTCCT--GTT-ACCG-GTTCACACCCGGTCCCGTGA-GGCACATA----G-TCT-TGAAATCAG-GGTAAACG-GGACAATCCCGTAGTCAAATCATGGGTGTGAAAAAAACGGCTTAAACAATGGCAAATGgccgtttttttcacacccatgatttgactacgggattgtcccgtttaccctgatttcaagactatgtgcctcacgggaccgggtgtgaaccggtaacaggagaagcttactccctctaggtaccttgatcccacctctggttgtgtccaggggtccgtgtcactttccaactacttagtttttgtatggttctcatgtttcgacttacggagatttgacactgttcgtatcttttgcctttactagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TCTTTCAAACGACGAAATTCTACAAAATCACGCTTCAGCTTTAATCACATTTAATATCCCAGTCAATGGGACGGACGAATATGAATTATCGTACCTATGCTGGATTCATAAAAAAACCCTTACAAAGATACATTGCTGAGTCTAGTAAATGTTCCACCAAACCCCTGTCGTTACTCTTCACGAAAATATTGACTGCTGTCAAGGATCAACCTTCAGACGTATTGTGAAAGTACATATGCCAGAAGTGGTAATGTGGATTCTAAAAGATTCTTCTAAACAATTCTAGTGAATTTGAAATCCCAGAACCTTTCTCATATCAACAACATCGAATCATGTGATTTTTCAAAAAATTCATAACCATTCCGCACGATGAATTATAGGTAAGACTTTGTAAAGTTACAAACGATTGCTTCTTTAACAAAAATGGAAAGGAAATATTCATATCTAATGATCAGCCATTCACAAAATTACTCTGATTCTAAACACAAGTACTCCGAAGTTGATATCAAAGCAATGCTGGAGTTCCTCATTGACAATATCTTTGTAGTTTTTGGCAATCAGGTCTTCCAACATTCTGTTGTAATTCCAATTGTCACGAATTGTGTTCCTTTGTTAGCGGACCTATTTTTATATTCTAATGAGGCAGAATGCATTCAAAAGCTTCTACATGAAAAGAAGAAATCTGTAGCGGGGACCTTTAATTCGACATATTGACGAGGTTTAGTATTAATGGTTTTCATGCATATGTCGATTTAATCGAAACGAACTAGAAATAAAGGACACCACATAATAACCCATGCCTGCTTCAAACTTGGATATTTTATTGAACATTGACATTAACGGCAAACTATCTACTTAACGTTATGACAAATGGGACGATTTTA
Unaligned ( gi|7 ): ATTAAAAAGAACTTTATACCTTGTCAGAATGGATAAAAAGTATAAGAAGAATATTAAAATCCCGTATTACACAAATGAAAACAAAAGTGTGTATCACCTAGCCTTCTGTGTTTCGAAAACCAGAAGTGATCAAAGAATTAGATAGGATACATGAGAAATATGTTTTGGTTCCAGCTGGCAAAGTCTGTAACAACATTGTCTTCGTCTGTAAGGCTCATTATTACAACTGTATTTTGAACGAACTTGGTATTAACTCAACATTTGGTAATCGTACTTACACTCCAACTGCTCTTTCAAAAGAGGAAAATCTTCAAAATCGTGTTTCAGTTTTATACACTTTTAATATCCTAATCAATGGGACGGATGTTACCGTACCTATACTGGATTCCAAAACTTTGCAAAAAAAAAAACCCAAAAACAAAAACAAAAAAAAACCTAGCAAAGACACATTGCTGGATCAAGTAAATGTTCCATCAAGCCCCTGTCTTTACTCCTCACGAAAATTATTTACACTTGTGAAGGAGCATTGCTTTAGACGTATTGTTCAACAGCATATATGCAAGAAGTGGGGTAAATCAAATTTGGATTC
Unaligned ( gi|16 ): GATATATCAAAAAACTCTACACTTTAACCCACCATTTCGCACGATAAATTGGAAAAGACAACGACTTACGAGAAGTTTGTTTCGTTAACAATAAATGGAAAAGGGAATATTCTTATCTAGCGATCTGTCATTTCAAAAAATTATTCTGTTAAAACTCGCACTTCACATTCTACCCATCACAAGTACTGTATACTCTGAAGTTGAATATTTAAGCAATGCTGGCTTCCTCACTTTGTGAATGCGAGAAAATATCAATTTGCAATGTTCCTGTGAACCACAAGTTGTTCACCAATTCTCCATTTTCTGTATTCCATTTTTGATTGGACGTTCTCATTTTCTTA
Unaligned ( gi|23 ): CTTCCACATCTGCCTTTCTTATTTAGTGTTATAGTTGATCATAAATGTTAATCGGCAAACACGGTCCAAATTTCTAACCTTTCTAACAAATGGGATAATTTCTAAATTCTCTATAGTCAATCTTCCCAGCATTTTATTTTGCTGCTACTCGGTGTTTTTCTCACAACTGGATTCAAAGTAGCAAGAGTTTCAACGTATTACATTTTTAAAAATAAAAAAAATCGAGGACAGGCTAATGACAAAGCAATTAATGTTAC
Unaligned ( gi|24 ): ATTTTATATTGACAAAGGGATCCCCACTCTTAAAAATATTGGACAGCACTACCCTTGCAATATGCACTCTCTATCAAGTCTGTGTCTTTCTTGTACCCAAGTTTTCATCTCAAATATTCCTTCTCCAATAGAGGTACAATGATAATTAGGCAGGAGTTGCAGAGGAACAGAATGTCGAAAGGACAGACAGACAGACACAGCGCTGTTATGTCATGATACGCTCGCTTTTTATGTCGGGCATATAAAAAGT
Unaligned ( gi|25 ): AAAACAAAAAATGCATATTATCTACCAACTATGTTTAACCAACAAGAAGCGTATGAACCGAATTAGATAGGGAGTTTGAGGAATAAAAATATAGGCTCCAAGATGATAAAAGCTTGTACATATTGTCTTTTGTTTCTAAGGCTCATTAAAACAATAATTTTACAGGGAATTTGGATTTACGCCAACTTTAGTAATTCCAGTTTTACTTAAACTAAGTTCCTTCTCCAAAAGATGAAAAT
Unaligned ( gi|31 ): TTGGATGCTATATGAATACTCTGATACAATGGCGCAAGCTAGCAACCACTGTAATGACAAACATGGACATTTCATCTTCTCCAGCGTCAAGCTACCCATACTTATGAAATATTTATGAAACAAATCCATTATTAATTTGCATATGATATCTTATTCGATACGCAAGACGTGTCC
Unaligned ( gi|33 ): TGTTCCTTTTGGTTGCTGACCTGTTTTCGTATTCTTACGAGGCAGAATTTATTCAAAAGCTTCTTCAAGAGAAGAAAAAAATTTCTAACTGTGGCCTTTAACTCGACAGTCAGATATATTGATGACGTTTTATCTACTGAATATAATTATTTGCTTTTAT
Unaligned ( gi|36 ): CCTGTACGAGTATGGGATATTCTAAATGTTAAAAAAGCAGATGTTCTTTTCACTCTTTACTACAATTTATGGATACCAAGGTTACATTATAGTTCCAGATGTGACCAAAAAACTATCATGGCGACGATTGTT
Unaligned ( gi|39 ): AATGTTAAAATAAAGCAGATGTTCTTTTCACTCTTTACTACATTTATGATACAGGTTACAGTTATAGTTCCAGATGTGAACCAAAACTATCATGGCGACGATT
Unaligned ( gi|40 ): CCTTTTTGTCGTAATCTGATGAGGTAGAATTGAATCAAAAGCTTTACACCAGAAGCAGAAAATATCTTATCTTCGCCTTCATACATCGAC
Unaligned ( gi|41 ): AGGAGGAGTTGCAAAGACAAAGTGAAACAGACAGACAACAGCAGTATATAGCATAATACACCAGCATTTTTATACGGGCGTATAAAATTT
Unaligned ( gi|43 ): TTCTTACGAGGCAGAATTTTCTTAATTAAAAAAGTCTTCTACAGAAGAGGAAGAGAGAAATCTAGCTATATGCTTTT
Unaligned ( gi|45 ): AAACACTCTGATTCCAAACAGATATTCAGAGTAAAGCTGATATCAAACAGATTTTGGAGTTCTTCATT
Unaligned ( gi|50 ): TCGTACCTATACTTCATAAAAACTCTTACAAAGATACATTTCCAAG
Alignments
lowQualScore : 777777777777777777777 111 1111 1 1111111111 2222 111 111 2222 111 111 11 22222222 1111 11 222222222 11 66666666666 6666666666 11 111 11 111 1 33 222 11 2 1 1 111 1 1 2222 1 111111 111 1 222 11 11
lowQualScore : 2 2 2 2 2 2 2 33 33 555555555555555555555 33 77 2 6666 2 2 0 1 2 2 2 2 4444 88888888 5555 5555 66 33 4 999 2 2 2 2 6666666 2 2 2 44 2 2 2 4444 2 44 2 2 0 55 2 22 5555 2 0 44 7777 1 444 22 4444 2 1 2 33 2 55 9999999 66 0000000000 33 66 444 2 2 2 33 5555 2 2 33 2 22 333 55555 0 333 55555 2 2 333 2 2 2222 0 4 33 2 444 2 2 2 5 2 2 888 2 2 2 111 000 4 666 3 8 3 0 4444 55 1 22 444 0 444 1 9999 3 88 6 33333333 7 6666 111 88 666666666 88 55555555555 1 1 5555555555 7 999999 6 5 5 33 000 5 5 5 6 6 8 11 2 999 3 00 6 333 88 6 0 0 2 777 3 0 0 1111 0 555555 666 3 6 000 1 1 88 77
lowQualScore : . . . . . . . .. .. ..................... .. .. . .... . . . . . . . . .... ........ .... .... .. .. . ... . . . . ....... . . . .. . . . .... . .. . . . .. . .. .... . . .. .... . ... .. .... . . . .. . .. ....... .. .......... .. .. ... . . . .. .... . . .. . .. ... ..... . ... ..... . . ... . . .... . . .. . ... . . . . . . ... . . . ... ... . ... . . . . .... .. . .. ... . ... . .... . .. . ........ . .... ... .. ......... .. ........... . . .......... . ...... . . . .. ... . . . . . . .. . ... . .. . ... .. . . . . ... . . . .... . ...... ... . . ... . . .. ..
lowQualScore : 9 9 9 9 9 9 9 99 99 777777777777777777777 77 33 7 7777 9 9 1 0 9 9 9 9 9999 55555555 0000 0000 55 22 7 222 4 5 7 4 2222222 2 2 2 66 2 2 2 5555 2 22 1 1 1 88 1 99 7777 0 0 55 4444 9 111 99 4444 2 0 2 99 5 99 5555555 99 5555555555 44 55 444 5 5 5 44 9999 5 4 11 1 88 777 33333 2 777 33333 1 1 111 2 2 1111 1 3 22 5 111 4 4 4 0 5 7 333 5 5 7 888 777 0 444 9 0 7 7 3333 88 0 22 000 2 000 0 0000 7 33 7 00000000 3 7777 333 33 777777777 33 77777777777 0 0 3333333333 3 666666 7 7 7 66 000 7 7 7 7 7 0 00 5 000 3 33 7 333 33 7 0 0 5 555 2 0 0 2222 0 777777 777 3 7 555 0 0 55 55
consensus : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--ACG--A-T-T-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--G--C-GT-T-T--T--T-A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAAC---C-AAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
Reference ( family-7 ) : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--ACG--A-T-T-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--G--C-GT-T-T--T--T-A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAA----CCAAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
gi|10 : TGATTC-GA-GGCA-AG-TTGA-CTTA-CAA--AC--AAGTT--G-T--TTATCACAGG----G--G--TT-TCGA-C--AG-TCA-CGTTTAATGGCAG-CATTT-C-GACAAGA--TTCA--------ATGAT------------------------T-T-A-ATTTGCC-CAT-ACA-----ATTCTGTTCATCTGGTCCAAACACTTGCTCT-G-ACATG----TTTACATA-GCA-A-TTGTT--A-G--GA-C-GT-T-T--T--TCATTACAC-T-G--A---TTCTGAGTA-TGGACTTACTCCC--GT----C-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GACGGGT--G----G-ACCCG-G--TC---AACA--GGGATGCTTACTCCTTCC--GAGG-------------CATCTC---T-----GGTGTGTC---C-----AAC-GGTCCGTTG-TATTGCCC-A-AC-CTT-GGTTTAGTATTCTATTT-TGGCATTT---ACGAGA-TTCGATT-TACGT-TT-CGTT---ATATTTTG-CCT-TTT--TCA-TTT---TG
gi|11 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttt--------ATGGTT----G----TTATA--ACGTGG-T-C-A--TTCACC-AGT-ACA-----A-CC-G-CCAT-TGGGTCAAG-GCTTG-TCTAA-ACGTA-----TT-CGTA-GGA-A-TTTCA--A-G--C--C-GT-T-C--T--T-A-TACAC-C-G--A---TTTCGACTA-CGGA-TTAAT-CC--AT----T-TATCT-ACCAAAAA-A--CAAT-GGGATC-C--GGCAGAT--TT---G-A-CAG-G--TT---AAAAG-GGTATGCTTACT-C-TCC--TATGT-ATCTGA--TTCCACCTC---T-----GGTATATCAAGCTTTTAAGG-GGTCCG-TGTT-TTGCCC-A-ACTTTT-GT-----TA-TCTGTTTGGGG-ACCA---ATGAG--CC-GG-T-CACTG-TCACATTTTAAT-CTTTG-C---CTT--ataaagacgtttctaattttttgtaaa
gi|12 : tttaTGAATC-GA-GACATGT-TT-A-CTTA--AG--AC--AAGTT----T-GTT-------GTGCAG--GGTTT-TCAA-ttcataactaaattttacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|13 : atgtttatattcttgtgacgcagaattaattcagaagcttctacatgagataactcgacaattagatacatgtactaacgaactagaaatagaggacaccacagaggtctttccatgtctcgttccgtactgatatttttatagaacattgacattacgccaaacctaacttactcaactttataacaaacgggacggatttcagcttctccatgtcaactccccaatatttatgtagcaagtatccatcatcacatgtataatgggtgtgtatgtctctcaacttattcgatacgcaagcaagcttgttctgctatgatcaggttttA-A--TTAT--------ATGGTC----G----TTATA--ACG--A-T-TTA-GTTTGCA-AAT-ACA-----A-CTTA-CGAT-TTGGTCAAATG--------------------TTT-CACA-CTA-A-TTCTT--A-A--G--C-TT-T-TCTT--T-A-AACAT-T-G--A---TTTTTACTA-CGAA-TTACT-TC--ATATACTGTACCTGATC--ACA-A--TAAA-GGGCCCGT--GGAGGGT--GT---G-A-CCG-G--TT---AACAG-GGTATGATTGCTCC-TCC--TGGGC-ACCCGA--TCCCACCTC----------------------------A-GACTCG-TG-T-TTGCCC-A-ACCCTT-TAATTTGTATTCCGAAT-AAG-ATTT---ATGAGA-CC-GG-T--ACTG-AT-CGTT---AC-CTTCA-C---C-----TA-TTC---
gi|14 : taggctgtttaagAATC-GA-GGCA-GG-CT-A-CCGA-CAA--AC--AAGTTC-A-T-GTTACAG---G----G--G--TT-CCAA-C--CG-TCT-CGTTTGAAGTCGG-CATTT-C-A-CAG-----TCTATAGATGCATGGTC----G----TTATA--ACG--A-TCT-A-GAGTGCC-A-----------A-CCTG-TCGT-TGGGTCAAATGA-TG-TTC-G-ACATG----TAT-CATA-CTA-A-TTGTT--A-G--GT-C-GT-TCT--T--T-A-TACAC-------------TGCCTA-CAGA-TTATT-CG--AT----T-T-CCTTATC--AAA-ATTTAA---GGCTAAC--TGCGGGT--GT---A-A-CCG-G--TCTTGAACAG-GGGAT-TTTAC-----CC--AAGGT-ACTTGA--TCCCATCTC---T-----GGTATATC---C-----AGA-GGTCCG-TG-T-TTGACC-A-TCTATT-CCTTATCTATTatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|14 : agcctgttctatgcacggccagttttttCA-----A-CCTG-CTAT-TGGGTCAAATtgacccaatagcaggttg
gi|15 : agcctgttctatgcacggccagttttttaatcgaggcaggctaccgacaaacaagttcatgttacaggggttccaaccgtctcgtttgaagtcggcatttcacagtctatagatgcatggtcgttataacgatctagagtgccaacctgtcgttgggtcaaatgatgttcgacatgtatcatactaattgttaggtcgttctttatacactgcctacagattattcgatttccttatcaaaatttaaggctaactgcgggtgtaaccggtcttgaacaggggattttacccaaggtacttgatcccatctctggtatatccagaggtccgtgtttgaccatctattccttatct-A--TTCT--------ATGGTC----G----TTATA--ACA--A-T-T-AAGCTTACC-AAT-ATG-----A-CCTA-TCAT-TGAGTCAAATGC-TG-TCT-G-ATATG----TTT-CATA-GCA-A-ATGTA--A-A--G--CCGT-T-T--T--TCA-CACAC-T-G--A---TTT-GACTA-CGGA-CTGTT-CC--GT----T--ACCTGATC--AAG-A--CTAT-GAGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---AACAG-GGGATGCTTCTCCC-TCC--TAGGCCACCTGG--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-A-TTGCCC-A-ACTCTT-GTTTTTGTATTCTATTT-AGG-ACTT---ACGAAA-TT-GA-T-CACTGTTT-CGTT---AT-CTTTG-C---TTTACATG-TTT---TG-TCA-GAAC
gi|17 : TGTATC-GA-G-CA-GG-CT-AACTTA-CAAGGAC--ACGTT--CCT-GTTTGCAG--G----G--G--TT-TCAAAC--AG-TCA-CATT-AAAGACAGGCATTTTC-G-TAA-AAATTAT--------ATGGTC----T----GTATA--GCG--A-T-TTA-GTTTACC-CATGATG-----A-C-TC-CCAT-CGAGTCAAATGC-TA-TCT-GAATGTG----TTT-CATA-GCA-A-TTGTT--A-A--GC-C-GT-T-T--TCCC-A-TACACTT-G--A----TTTGACAA-CAGA-cactctgattgcccacacaagtac
gi|18 : gtcaaacttctctatatttaatgtcgcaatagtttcaccatcaaacctgctgtggtgtgtatgtctctcaacgttattcaatacaaaaattgttctgccgtatgatcagatttAATC-AC-AGCA-GG-CT-G-CTGT-CAA--TC--ATTTT--GAT-GCTTCAG---G----A--G--TT-TCAA-C--AT-TGC-CGTTTAAAGTCAG-TAGTT-T-G-CAA-A--TTCT--------GTGGTT----G----TTATA--TTG--A-T-TTA-GTTTGCC-AGT-GCA-----A-CCTG-CCAT-TGAGTCAAATAC-AG-TTT-G-GCATG----TTT-AATA-CCG-ATTTCCT--A-G--GT-C-AT-T-T--TG-T-A-AACAC-T-G--A---TTTCGACTA-AGAA-TTA---AA--GT----T-TACCCAATC--AAGTA--TA---GATCTCAT--GGCGGAT--
gi|19 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttTGAATC-GA-GGCA-AG-CT-A-CTTA-CAG--AC--AAGTT--G-TTGTT-------GCAGGG--G--TT-TCAA-C--AG-TCA-CGTTTAAAGGCAG-CATTT-C-G-TAA-A--TACT--------ATGGTC----G----TTATA--ACT--ATT-T-A-GTTTACC-AAT-ATG-----A-CCTA-CCAT-TGAGTCAAATGC-TG-TCT-G-ATGTG----TTT-CATAGCCA-T-TTGTTGGA-G--GTCC-GT-G-T--TGCC-C-TACAC-TCG--A---TTTT
gi|2 : atatttatgtagcaatattccatcatcaactgcatatggtgtgtatacatgtctcttaacttattcgatacgcaagagcttgttctgcgtatgatcagatttTGAATCCGA-GACA-AG-CT-A-CTTATCAG--ACGAAAGTTTCG---GTT-------GCAGAG--G--TTATCAA-A--GGGTCA-CGGT-AAAGCCAG--ATTT-CCG-TAA-----TCT--------ATGGTCCTATA----TTATA--ACA--A-T-TTA-GTTGACTTATT-ATG-----A-CCTA-CAAT-TGA-TCAAATGC-TG-T-T-G-A--TG----GTT-CATA-ACC-A-TTGTT--A-A--G--C-CT-T-T--T--C-A-C-CAA-T-GTGA---CTTTGACTA-CG-A-TT--T-CC--GT----G--ACCTGATCTAAGG-A--CTAT-GG-CT-AC--GG-GGGTAGGT---GTA-CAG-GGGTC---AACCA-GGTCTGCTTAC-----CC--TAGGC-ACCTGA--CCCCACTCG---TAACAGGATG-GTC---C-----AGGTGTTCCG-TA-A-TGACTC-A-ATTCTT-G--TTTGTATTATATTT-AGG-AC-T---GC-AGACTT-GA-TCCACTG-TT-C-TTAA-AT-CTT-G-C----CT--ACA-TTC---TGCTC
gi|20 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttcttAATC-GA-AACA-GG-CT-A-CTTA-CAA--AA--AAGTT--A-T-TTTTGCAG--G----G--A--TT-TCAA-C--AG-TCG-AATTTAAAGGCAG-CATGT-C-G-TAA-A--TTCT--------TTGGTC----G----TTGTA--ACG--A-T------TTTGCatattggatatactttaggaa
gi|21 : actacgatctttatagatgaaatattaacgggacgatttgagcttctccatcgtcaacttcccatatttatgtagcaaatgtagcaatattatattccatcatcacctgcatattatgttgtgtaggtctctcaacttattcgatacgcagagcttgttctgcgtatgatcagtttttt-ACA-----A-CCTG-CCAT-TGGGTCAAATAA-TG-TCT-G-ACGTG----TTT-CTTG-GCT-A-TTCTT--AAG--G--T-GT-TCT--T--T-G-TACAC-A-T--A---TTTTGACGA-CGGA-TTACT-CC--GT----T-TACCTGATC--AGG-A--CTAT-GGGCTCAC--AACAGGT--AT---G-A-CCG-G--TC---TACAG-GGGATGCTTACTCC-TCT--TAGGC-ACCCGA--TCTCCCCTC---T-----GGTGAGTC---C-----AGG-GGTCAT-TG-T-TTGACC-A-ACTCTT------TGTTTTCT----------CTT---ACGAGA-TT-GA-T-CACTA-TT-CGTT---AT-TGTCG-C---CTT--ttagaattat
gi|22 : cccaaT-T-TA-T--T-A-TATAT-A-G--A---TTT-GTCAA-AGGA-TTACC-CCC-GT----TCTAACTGATC--AA--A--CAATAGGGCTTATTTGAAGGGT--GT---G-A-CCGCG--TC---AGCAG-GGGG-GTTAATTAC-TCCAATAAGT-ACCTTACCTCCCA-------T-----GATACAAT---C-----AGG-GGTACG-TG-G-TCTCCG-ATATACTT-AATCTGTTGTT-CGT----GA-ACTT---ACAAGA-AT-GA-T-CTCTG-TT-CATT---AT-TTTTG-CA--TTT--TCA-TTC---Tttca
gi|22 : aaggtattctta---TGTTCGTGAACTTACAAGAATGATCTCTGTTCATTATTTTTGCATTTTCATT---CTACATCTTTCAATCATTAATTGT--CATacatctttcaatcattaattgtcatattaca
gi|26 : aaggtattcttatttattatatatagatttgtcaaaggattacccccgttctaactgatcaaacaatagggcttatttgaagggtgtgaccgcgtcagcaggggggttaattactccaataagtaccttacctcccatgatacaatcaggggtacgtggtctccgatatacttaatctgt-------G----G--G--TC-TCAA-C--AG-TCT-CGTTTGAAGTCCG-TATTT-T-G-CAA-A--TTCT--------ATGGTC----GTTACTTATA--ACG--A-TCT-A-GTTTGCC-AAT-ATGTACAAA-TTTG-GCGT-TGGGTCAAATGC-TA-TCT-A-ACGTG----TTT-CATA-CCA-A-TTGGT--A-G--GT-C-GTGC-T--T--T-A-TACAT-T-G--A---TTCTGACCA-TGGA-TGACT-TC--GT----T-TACC-------------------AGGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGGTGTTTACTCC-TCC--TAAGC-Aattaca
gi|27 : acagTTCAAAATCAG-CATTT-T-A-CAA-A--TTCT--------ATGGTA----G----TTATATAGCG--A-TCT-A-GTCTGCC-AGT-A-G-----A-ACTG-CTAT--GGGTCAAATG-----TAT-G-ACATG----TTT-CATT-CCA-A-TT-------------C-GT-TAT--T--T-A-CACAC-T------------GATTATCGAG-TT--------GT------------------AG---------GGGCTCAC--GGCGGAT--AT---G-A-CCG-G--TT---GACAG-GGAATTCATACTCT-TCC--AATGC-ACCTGA--TCCCACCTC---A-----GG-GTGTC---C-----GGG-GGTCCG-TG-T-TTACC
gi|28 : AATAATAAATCAATCAGGAGGGTATATTTG-AATAAAATTG-GCAATTGTAGA--AATTG-------CTTTACTGAAGTAATAGTGTTACATTTCTAAAATATGCGAAACTGCATT-ATGTAAAGGCAAA-TACAACGATCAGTGATCAA-TCTC-GTAAGTCCCAA-AT--AGAA---TAC-AAA-AC-A-AG-AG-TTGG-GCAA--ACACGGACCCCTGGACA
gi|29 : taGCTCAC--GGCGGAT--GT---G-A-TCT-A--TT---GACTA-GGGATGTTTACTCC-TCC--TAAGC-ACCTGA--TTACGCCGC---T-----GGTATATC---C-----AGG-GACCAG-TT-T-TTTTCCAA-ATTCTT-A-ATTTGTATTCCATAT-GTG-AGTT---ATAATA-TT-GA-T-CACTG-CT-CGTT---AT-CTTCG-t
gi|3 : TGCACC-AA-GGGA-GG-TT-A-CTTA-CAA--AC--AAG--------------------------G--TT-TCAA-C--AG-TCG-CGTCTAACGTCAG-CATTT-T-G-CAA-A--TTTT--------ATGGTC----G------ATA-----------T-A-GTTTGCG-GGA-ATG-----G-CCTA-CCAT-TGGGTCAAATGT-TG-TCT-G-ACGTG----TTT-TATA-TCA-----------------------C-T--T--C-A-TACAC-A-G--A---TTTTGACTA-CGTA-TTACT-CC--GT----T-TACCTGATC--AAT-A--CAAT-GGGATCAC--GGCGGGT--GT---G-A-AAG-G--GC---AACAG-GGGATGTTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTTTGTC---C-----AGG-GATCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCTATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG-T---TTT--GTA-TTC---TGTTTG-GGACTTACGAGCTTGATCGATGTTCGTTATCCTCGCATTTTCATCCATATACATATTTGCATT-TTGAATGT--TATTATGTACAAATAACAAATCTATAA--AGGTTAT-TA-ATCATAACACTGTGTAGACATAAT--AATGGT--CAATA--TA--AAAG------------AATTATAAAAC---CCAAA-TACATTTGTGTAAAGGCAAA-T-------ACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACA-AACCA--GAGG-TGGGATCC-GGTGCCTAGGAGGAATA---AGCATCCCCT--GTTGACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-T-GA-TCAG-G-TAAACG-GAACAAT-CCGTAGTCAAATCA---GTGTGTGAATAACGGCCT--ATAATG--AAATGTTATTGCAGATGCCAGatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|30 : aTAAATATTTTTATT-CGGAGTGTGACATTATGTTTGAA---------GATAA--AG-TCATGTACGTC-TA-CA---TGCACATGTAATTCAATTGTGCCAATCTTTA--AAAGT----------CAGTTTTAAAA----------TACATTTATGTAAAGGTAAA-GATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTtatgcttgtataaaaagtctatataatgaaattataaatgtgaaaatatgtcattgatacatgttt
gi|32 : AAGC-ACCTAA--TCCCACCTC---T-----GGTGTATC---C-----AGG-AGTCCA-TG----------------------TTTGTATTCCGTCT-AGG-ACTTGAAACGTAT-TT-GA-TGCATTG-aat
gi|32 : --TAAGC-ACCTAA--TCC-ACCTC---T-----GGTGTATC---C-----AGG-AGTCC-----------------------ATTTTTGTATTCCGTCT-AGG-ACTT-----GAAA-AT-GA-aaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|34 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagatt----TTT-CATA-CGA-A-TTGTTGGA-G--G--C-TT-C-T--T--T-A-TAC
gi|35 : tatctagtcagattttttgtcaagaattctataggtaatgaaataaaggtctatcatttgcaaaacacaagctttcaactggccgtccccgaaatgtagctggtgatcgaa-TCC--TAA---ACTTG---TCTCACATCATTT-----GGTATACC---A-----AGG-AGTCTG-TG-T-TTGCTC-A-ACTCTT-GTTTATGTATCCTGTTT-TGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--
gi|37 : tgatgaaCAACCGAGGAGGGTGGGATTGTGGTGTCTAGGGG-AGTATAAAGCATCCCTTTAGTTTGCTGCGT-CACACT-G---CCG-GATGCC-CATATAGCGCTCTATGGG-TCACTG-TAAAAGAGAACAATCACGTAGTCAAcaactacgcggg
gi|38 : -A-TTGTT--C-G--T--T-AT-T-T--T--T-G-TGTTC-T-G-------TTTGACTA-CGGA-TTGTT-CCTTGT----T-AACTTGACT--AAT-A--TGAG-GGACT-----GGAGTGTTAGTGAAG-A-CCA-G-------AACAACGAGA-GCTAATTCA-T-C--TAGGA-ACAGGA--TCCC
gi|4 : AATC-AA-GACA-GG-CT-A-CTGA-CGA--AC--AAGTT--G---GT----------------G--CT-ACAA-GGGAG-TCA------ATAGTCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----ATATA--ACG--A-T-CCA-GTTTGCC-AGT-ATA-----A-CATG-CCAG-TGGATCAAATGC-CG-TTT-G-ACAAGACAGTTT-CATA-CCA-A-TTGCT--A-G--G--CCGT-TCT--T--T-A-TACAC-A-G--A---TTTTCACTA-C----------------------TACCTGATA--AAG-T--TTAA-GGATTCAC--AGTGGAT--GT---G-A-CCG-G--CG---GACAG-GGGATGCTTACTCC-TGC--TATGT-ATCTTA--TCTCACCTC---T-----GGTATATT---C-----AGA-GAGCTA-TG-T-TAGCCC-A-ACTCTA-A--TTTGTATTCCGTAT-AGA-AATT-----GAGA-TC-GA-T-CACTG-TT-CGTT---AT-CTTCATC---TTT--ATAGTGCGAGTATTCT-GGACGTACGgaa
gi|42 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaA--TCATGCCTC---T-----GGTATATT---A-----AGG-GGACTG-TG-T-TTGCCC-A-TCTCTT-A-TATTATATTCCGTAT-
gi|44 : cttacAGTGATCAA-TCTT-GTAATTCCT----TTGAGAA---TACAAAATGT-AGAG-AA-T--G-TCAA--ACAAGGATCCCGGGAcaatcggagcgtcac
gi|46 : AAATTC-TG-TCT-G---GTG----TAT-TATA-GTGGA-TTGTT--A-GCCG--T-GT-T-T--T--C-A-TA-AT-T-G--A----TTTGACAA-TGGA-TTaaaac
gi|47 : TGTAAAGGCAAA-TATAACGAATAGTGATCAA-TCTT-GTCAGGCCTAC-AT--AGAA---TACAAAA-AC-A-
gi|48 : TC-GTAGTCCCTAA-AT--C-AA---TATAAAA-AT-A-AG-AGATTGACGCAA--ACATTGATCCCTGGAAAC
gi|49 : taCTG---TCCCACCTC---T-----GGTATGTC---C-----A-G-AGTCTG-TG-T-TTGCCG-T-ATTCTC--TATTTATAT
gi|5 : cgTAAATC-GA-GACA-GG-CT-A-CTTA-CAA--AC--AAGCT--GAT-GTT-------GCAGAG--G--TT-TCAA-G--AG-ACA-CTTTTCAAATCAG-CTTTT-C-G-TAA-A--TTCT--------ATGGTC----G----TTATATAACG--A-TCT-A-ATTTGCA-AAT-ACA-----G-CCTT-TCAT-TGGGTCAAATGT-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--GC-C-GT-TAT--T--T-A-TACA
gi|51 : cacatttctttgattgattttatgaaacactgatctctaaacagtcggaattcccatgggcatgaattgtgctactttgttagctgacctgttcttatattcttacaaggcaaattttattcaaaagtttctacatgagaagaaaaaatctttagctgtggtttttaattcgatagttggatatatcgatatcgttttatctattgatagctattattttcatttatatgtcgattcgttatatcccattgaacaacagacaccacagagtcatcgtacttggatattttactgaacgcagacactatcggcaaactaacaactcaaactttatgacaaacgggacgatttcagcttctccactgtcaacttcccatatgtacaaatgtatgtagcaacatcccatcagcacttgtatatggtgtttattcgatatgaaagagcttgttctgtgaataatcagtttt--T--T-A-TACGC-T-G--A---TTTTGACTA-CATA-TTACT-CC--GT----T-CAGCTAATC--t
gi|52 : TT---AAGAGA-TT-GA-T-CACTG-TT-CATT---AT-CTTCA-C---TTT--
gi|53 : aaGG-AATT---ATGAGA-TT-GA-T-CACTG-TT-CGTT---AT-C
gi|54 : CCG-GT-CACACTCG---CCGTGA-GCT-CATA----G-TC
gi|6 : TGAATC-GA-GGCA-GC-CT-A-CTTA-CAA--AC--AAGTT--G-TTGTT-------GCA--GATG--CT-TCAT-A--AG-TCA-CGTTTAAGGGCAG-CAATT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--ACG--ATT-T-A-GTTTGCC-AGT-ATG-----G-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ATGCG----TT
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagttttT--GT---G-A-CCG-G--TC---AACAG-GGGATACATACTCC-T-----AGAC-ACCTGA--TCCCACCTC---T-----GGTGTGCC---C-----AGG-GGTCCG-TG-T-TTGCCG-A-ACTCTTGGTTTTTGTATTCTAATT-GGG-ACTT---ATGAGA-TT-GA-T-GACTG-TT-CGTT---GT-CTTTA-C---ATT--GTG-ATC---T-TTCgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaactcttggtttttgtattctaattgggacttatgagattgatgactgttcgttgtctttacattgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgtT-CTTGG-T---TTTT-GTA-TTC---TAATTG-GGACTTATGAGATTGATGACTGTTCGTTGTCTTTACATTGTGATC---TT---TCTTTGTA---CTAAGTTT--AATTAtttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|8 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgttgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaacTGATTC-GA-GGCA-AGACT-A-CTTA-CAA--AC--AACTT--G-TCGCA-------G----G--GATTT-TGAA-A--AG-TTA-CGTTTAAAGGCAT-TATTT-C-G-CAA-G--TTCT--------ATGGTC----G----TTATA--ACG--A-TCT-A-CTATGCC-CAT-ACA-----A-ACTG-CCAA-TGAGTCAAATGC-TG-TCT-G-ACATG----TTT-CATA-GCA-A-TTATT--A-A--G--CTGT-T-T--T--TCA-TACAC-T-G--AATTTTTTGACTG-CATA-TTATT-CC--AT----T-TACTTGATC--AAG-A--CAAT-GGGCTCAA--GGCGGGT--GT---G-A-CCT-C--TC---GACAG-GGTATGCTTACGCC-TTT--TAGGC-ACCTGA--TCCCAACTC---T-----GGTATGCC---C-----AGG-GGTCTG-TG-T-TTGTCT-A-ACTCTT-G-TTTTGTATTCTATGA-AGG-ACTT---ACGAAA-TT-GA-T-CACTG-TT-CATT---AT-GTTTG-CCCTTTC--ATA-CTC---TGaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|9 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagatttTAAATC-GAAGGCA-AG--T-A-CTTA-CAG--AC--AAGTT--GTT-GCTGTAG---G----G--G--TT-TCAT-T--TG-CCATTGTTTAAatgccatagaagtacat
gi|9 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgtttGTAAAGGCAAAAGATA-CGAACAGTG-TCAAATCTCCGTAAGTCGAAACATG-AGAACCATACAAAA-ACTA-AGTAG-TTGG-AAAGTGACACGGACCCCTGGACACAACCA--GAGG-TGGGATCAAGGTACCTAGAGGGAGTA---AGCTTCTCCT--GTT-ACCG-GTTCACACCCGGTCCCGTGA-GGCACATA----G-TCT-TGAAATCAG-GGTAAACG-GGACAATCCCGTAGTCAAATCATGGGTGTGAAAAAAACGGCTTAAACAATGGCAAATGgccgtttttttcacacccatgatttgactacgggattgtcccgtttaccctgatttcaagactatgtgcctcacgggaccgggtgtgaaccggtaacaggagaagcttactccctctaggtaccttgatcccacctctggttgtgtccaggggtccgtgtcactttccaactacttagtttttgtatggttctcatgtttcgacttacggagatttgacactgttcgtatcttttgcctttactagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
blockSeqs : C A T A . A T GG GA CCTGTTTGCAGG AT GT A GGG G T T G T C . AAA ATAGATGC CTAT TTAC TA TG T TT A T G G TGTACAA . . . CT . A A ACAG . GC G T GG A CC TCC G C CT CCC . TT TG ATTT T G . AA . TT ATACTGT AA AATTTAA TT AG GAA T . C GG TTGA C . AA C CC ATT AACAG AAG TTTTA T . TT A T GGTT T GG . GAA C . . C T A TTA . T T CCT ACA G GAG C T G CATA AC A GC TT GAC T TAAC T . G GTACGTC A CTGT GAC TC TGCCAATCT . T A A CCCAAA T GATAA A C C TG CCA T T G T A C TG C GAG G GT G TAA TA T C T C GTC T T A TAGC C ATGGG TG A C TGG A A AA GC
blockSeqs : . . . . . . . . . CATGTTACAGG . AT . AC . . A . . . . A . . . TA . T CT . . A . CA . . . A . . . . . G . . GG . . TC . C A GCC . TC . T . A . AC . C TCT TA AACAAT . TA . . . . . A . . . . . . . . . . . T . . TAA A A . . . . . G . . AA . C . A TG . . T . A T AA A TT TT T . G . . TAATCA . T CAT . TCAATA . . G T . T TATAA . . . G . . . . . . . . C A . AA . . . . . . C . T . . . . TGAAA GG . C
blockSeqs : . . . . . . . . . GATGCTTCAGG . . . C . . T . . . . A . . . . . . TT . . A . CA . . . C . . . . . C . . . . . CC . A . TC . C . T . G . AT . . TT . AATAAA . . . . . . . A . . . . . . . . . . . T . . CCT T A . . . . . . . . . . T . . A . . T . . C GT . A AGATA . . . . . . . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . GTTGTTGCAGG . . . C . . G . . . . A . . . . . . TT . . A . CA . . . C . . . . . C . . . . . CC . C . GT . T . T . G . GT . . TT . GACTAT . . . . . . . A . . . . . . . . . . . A . . GTT T A . . . . . . . . . . C . . T . . T . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . TCGGTTGCAGA . . . C . . C . . . . A . . . . . . TT . . G . TG . . . C . . . . . G . . . . . TC . A . TC . T . T . G . AC . . TT . GACTAT . . . . . . . A . . . . . . . . . . . A . . AAT A G . . . . . . . . . . T . . G . . T . . . . . . . . . .
blockSeqs : . . . . . . . . . ATTTTTGCAGG . . . A . . G . . . . A . . . . . . CT . . A . TG . . . C . . . . . G . . . . . TC . . . T . T . T . A . AC . . TT . GACTAT . . . . . . . T . . . . . . . . . . . T . . GTT T A . . . . . . . . . . C . . A . . A . . . . . . .
blockSeqs : . . . . . . . . . GATGTTGCAGA . . . C . . T . . . . A . . . . . . CT . . T . CA . . . C . . . . . C . . . . . CC . . . T . T . C . G . AC . . TT . ACAATA . . . . . . . A . . . . . . . . . . . G . . ATT C A . . . . . . . . . . T . . G . .
blockSeqs : . . . . . . . . . GTTGCTGTAGG . . . C . . T . . . . A . . . . . . CC . . A . TG . . . A . . . . . A . . . . . CC . . . T . A . T . G . AC . . TT . TACAAT . . . . . . . G . . . . . . . . . . . T . . GTT C A . . . . . . . . . . C . . A . .
blockSeqs : . . . . . . . . . TGTTGTGCA . . . C . . T . . . . A . . . . . . CT . . G . TG . . . C . . . . . G . . . . . CT . . . C . A . T . G . GT . . TA . TATGAG . . . . . . . G . . . . . . . . . . . T . . GT T T . . . . . . . . . . C . . . . .
blockSeqs : . . . . . . . . . GTTGTTGCA . . . G . . T . . . . A . . . . . . CT . . G . CA . . . T . . . . . C . . . . . C . . . T . T . T . A . AC . . TC . GTTTAA . . . . . . . G . . . . . . . . . . . T . . AA A A . . . . . . . . . . C . . .
blockSeqs : . . . . . . . . . GTCGCAG . . . A . . T . . . . A . . . . . . C . . G . TG . . . C . . . . . C . . . . . C . . . T . T . T . T . AT . . TT . GACAAT . . . . . . . A . . . . . . . . . . . T . . AT A G . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . GGT . . . A . . G . . . . G . . . . . . T . . A . TA . . . C . . . . . T . . . . . C . . . T . A . T . G . A . . T . GTATA . . . . . . . A . . . . . . . . . . . T . . TA T A . . . . . . . . . . G . .
blockSeqs : . . . . . . . . . . . . . T . . G . . . . G . . . . . . T . . G . CA . . . T . . . . . C . . . . . T . . . T . T . T . G . . . . G . G . . . . . . . G . . . . . . . . . . . T . . GT G . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . T . . A . TG . . . C . . . . . C . . . . . C . . . C . A . . . T . . . . T . . . . . . . . . A . . . . . . . . . . . T . . G . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . . . CA . . . C . . . . . G . . . . . C . . . T . T . . . T . . . . . . . . . . . . . G . . . . . . . . . . . T . . A . . . . . . . . .
blockSeqs : . . . . . . . . . G . . . . . . . . . C . . . . . T . . . T . T . . . . . . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . . . . . . . G . . . . . T . . . T . T . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . C . . . . . . . . . . . . .
blockSeqs : . . . T . .
blockSeqs : . T .
blockSeqCons : GNTGTTGCAGG********** A*** CT* C* CC** T*** T** ***
originalCons : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTT--G-T-GTT-------G----G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------ATGGTC----G----TTATA--ACG--A-T-T-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--G--C-GT-T-T--T--T-A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAAC---C-AAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
finalCons : NTGAATC-GA-GGCA-GG-CT-A-CTTA-CAA--AC--AAGTTGNTGTTGCAGG----------G--G--TT-TCAA-C--AG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAAA---TTCT--------ATGGTC----G----TTATA--ACG--A-TCT-A-GTTTGCC-AGT-ACG-----A-CCTG-CCAT-TGGGTCAAATGC-TG-TCT-G-ACGTG----TTT-CATA-CCA-A-TTGTT--A-G--GCC--GT-T-T--TT---A-TACAC-T-G--A---TTTTGACTA-CGGA-TTACT-CC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-CCG-G--TC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TGT--TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAAC---C-AAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
15 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TCTTTCAAACGACGAAATTCTACAAAATCACGCTTCAGCTTTAATCACATTTAATATCCCAGTCAATGGGACGGACGAATATGAATTATCGTACCTATGCTGGATTCATAAAAAAACCCTTACAAAGATACATTGCTGAGTCTAGTAAATGTTCCACCAAACCCCTGTCGTTACTCTTCACGAAAATATTGACTGCTGTCAAGGATCAACCTTCAGACGTATTGTGAAAGTACATATGCCAGAAGTGGTAATGTGGATTCTAAAAGATTCTTCTAAACAATTCTAGTGAATTTGAAATCCCAGAACCTTTCTCATATCAACAACATCGAATCATGTGATTTTTCAAAAAATTCATAACCATTCCGCACGATGAATTATAGGTAAGACTTTGTAAAGTTACAAACGATTGCTTCTTTAACAAAAATGGAAAGGAAATATTCATATCTAATGATCAGCCATTCACAAAATTACTCTGATTCTAAACACAAGTACTCCGAAGTTGATATCAAAGCAATGCTGGAGTTCCTCATTGACAATATCTTTGTAGTTTTTGGCAATCAGGTCTTCCAACATTCTGTTGTAATTCCAATTGTCACGAATTGTGTTCCTTTGTTAGCGGACCTATTTTTATATTCTAATGAGGCAGAATGCATTCAAAAGCTTCTACATGAAAAGAAGAAATCTGTAGCGGGGACCTTTAATTCGACATATTGACGAGGTTTAGTATTAATGGTTTTCATGCATATGTCGATTTAATCGAAACGAACTAGAAATAAAGGACACCACATAATAACCCATGCCTGCTTCAAACTTGGATATTTTATTGAACATTGACATTAACGGCAAACTATCTACTTAACGTTATGACAAATGGGACGATTTTA
Unaligned ( gi|7 ): ATTAAAAAGAACTTTATACCTTGTCAGAATGGATAAAAAGTATAAGAAGAATATTAAAATCCCGTATTACACAAATGAAAACAAAAGTGTGTATCACCTAGCCTTCTGTGTTTCGAAAACCAGAAGTGATCAAAGAATTAGATAGGATACATGAGAAATATGTTTTGGTTCCAGCTGGCAAAGTCTGTAACAACATTGTCTTCGTCTGTAAGGCTCATTATTACAACTGTATTTTGAACGAACTTGGTATTAACTCAACATTTGGTAATCGTACTTACACTCCAACTGCTCTTTCAAAAGAGGAAAATCTTCAAAATCGTGTTTCAGTTTTATACACTTTTAATATCCTAATCAATGGGACGGATGTTACCGTACCTATACTGGATTCCAAAACTTTGCAAAAAAAAAAACCCAAAAACAAAAACAAAAAAAAACCTAGCAAAGACACATTGCTGGATCAAGTAAATGTTCCATCAAGCCCCTGTCTTTACTCCTCACGAAAATTATTTACACTTGTGAAGGAGCATTGCTTTAGACGTATTGTTCAACAGCATATATGCAAGAAGTGGGGTAAATCAAATTTGGATTC
Unaligned ( gi|16 ): GATATATCAAAAAACTCTACACTTTAACCCACCATTTCGCACGATAAATTGGAAAAGACAACGACTTACGAGAAGTTTGTTTCGTTAACAATAAATGGAAAAGGGAATATTCTTATCTAGCGATCTGTCATTTCAAAAAATTATTCTGTTAAAACTCGCACTTCACATTCTACCCATCACAAGTACTGTATACTCTGAAGTTGAATATTTAAGCAATGCTGGCTTCCTCACTTTGTGAATGCGAGAAAATATCAATTTGCAATGTTCCTGTGAACCACAAGTTGTTCACCAATTCTCCATTTTCTGTATTCCATTTTTGATTGGACGTTCTCATTTTCTTA
Unaligned ( gi|23 ): CTTCCACATCTGCCTTTCTTATTTAGTGTTATAGTTGATCATAAATGTTAATCGGCAAACACGGTCCAAATTTCTAACCTTTCTAACAAATGGGATAATTTCTAAATTCTCTATAGTCAATCTTCCCAGCATTTTATTTTGCTGCTACTCGGTGTTTTTCTCACAACTGGATTCAAAGTAGCAAGAGTTTCAACGTATTACATTTTTAAAAATAAAAAAAATCGAGGACAGGCTAATGACAAAGCAATTAATGTTAC
Unaligned ( gi|24 ): ATTTTATATTGACAAAGGGATCCCCACTCTTAAAAATATTGGACAGCACTACCCTTGCAATATGCACTCTCTATCAAGTCTGTGTCTTTCTTGTACCCAAGTTTTCATCTCAAATATTCCTTCTCCAATAGAGGTACAATGATAATTAGGCAGGAGTTGCAGAGGAACAGAATGTCGAAAGGACAGACAGACAGACACAGCGCTGTTATGTCATGATACGCTCGCTTTTTATGTCGGGCATATAAAAAGT
Unaligned ( gi|25 ): AAAACAAAAAATGCATATTATCTACCAACTATGTTTAACCAACAAGAAGCGTATGAACCGAATTAGATAGGGAGTTTGAGGAATAAAAATATAGGCTCCAAGATGATAAAAGCTTGTACATATTGTCTTTTGTTTCTAAGGCTCATTAAAACAATAATTTTACAGGGAATTTGGATTTACGCCAACTTTAGTAATTCCAGTTTTACTTAAACTAAGTTCCTTCTCCAAAAGATGAAAAT
Unaligned ( gi|31 ): TTGGATGCTATATGAATACTCTGATACAATGGCGCAAGCTAGCAACCACTGTAATGACAAACATGGACATTTCATCTTCTCCAGCGTCAAGCTACCCATACTTATGAAATATTTATGAAACAAATCCATTATTAATTTGCATATGATATCTTATTCGATACGCAAGACGTGTCC
Unaligned ( gi|33 ): TGTTCCTTTTGGTTGCTGACCTGTTTTCGTATTCTTACGAGGCAGAATTTATTCAAAAGCTTCTTCAAGAGAAGAAAAAAATTTCTAACTGTGGCCTTTAACTCGACAGTCAGATATATTGATGACGTTTTATCTACTGAATATAATTATTTGCTTTTAT
Unaligned ( gi|36 ): CCTGTACGAGTATGGGATATTCTAAATGTTAAAAAAGCAGATGTTCTTTTCACTCTTTACTACAATTTATGGATACCAAGGTTACATTATAGTTCCAGATGTGACCAAAAAACTATCATGGCGACGATTGTT
Unaligned ( gi|39 ): AATGTTAAAATAAAGCAGATGTTCTTTTCACTCTTTACTACATTTATGATACAGGTTACAGTTATAGTTCCAGATGTGAACCAAAACTATCATGGCGACGATT
Unaligned ( gi|40 ): CCTTTTTGTCGTAATCTGATGAGGTAGAATTGAATCAAAAGCTTTACACCAGAAGCAGAAAATATCTTATCTTCGCCTTCATACATCGAC
Unaligned ( gi|41 ): AGGAGGAGTTGCAAAGACAAAGTGAAACAGACAGACAACAGCAGTATATAGCATAATACACCAGCATTTTTATACGGGCGTATAAAATTT
Unaligned ( gi|43 ): TTCTTACGAGGCAGAATTTTCTTAATTAAAAAAGTCTTCTACAGAAGAGGAAGAGAGAAATCTAGCTATATGCTTTT
Unaligned ( gi|45 ): AAACACTCTGATTCCAAACAGATATTCAGAGTAAAGCTGATATCAAACAGATTTTGGAGTTCTTCATT
Unaligned ( gi|50 ): TCGTACCTATACTTCATAAAAACTCTTACAAAGATACATTTCCAAG
Alignments
lowQualScore : 1 1111111111 2222 111 111 2222 111 111 11 22222222 1111 11 222222222 11 66666666666 6666666666 11 111 11 111 1 33 222 11 2 1 1 111 1 1 2222 1 111111 111 1 222 11 11
lowQualScore : 2 2 2 2 2 2 2 2 33 2 33 2 4 2 2 2 2 22 2 2 0 1 2 2 2 2 4444 88888888 2 4444 5555555 33 33 33 33 2 55 2 5555555 2 2 2 22 6666 333 4 2 0 2 4 4444 2 55 2 1 55 1 2 22 2 2 1 7777 1 444 22 4444 2 2 33 88 666666 66 0000000000 33 66 444 2 2 33 2 5555 2 2 33 2 22 333 55555 0 333 55555 2 2 333 2 2 2222 0 4 33 2 444 2 2 2 5 2 2 888 2 2 2 111 000 4 666 3 8 3 0 4444 55 1 22 444 0 444 1 9999 3 88 6 33333333 7 6666 111 88 666666666 88 55555555555 1 1 5555555555 7 999999 6 5 5 33 000 5 5 5 6 6 8 11 2 999 3 00 6 333 88 6 0 0 2 777 3 0 0 1111 0 555555 666 3 6 000 1 1 88 77
lowQualScore : . . . . . . . . .. . .. . . . . . . .. . . . . . . . . .... ........ . .... ....... .. .. .. .. . .. . ....... . . . .. .... ... . . . . . .... . .. . . .. . . .. . . . .... . ... .. .... . . .. .. ...... .. .......... .. .. ... . . .. . .... . . .. . .. ... ..... . ... ..... . . ... . . .... . . .. . ... . . . . . . ... . . . ... ... . ... . . . . .... .. . .. ... . ... . .... . .. . ........ . .... ... .. ......... .. ........... . . .......... . ...... . . . .. ... . . . . . . .. . ... . .. . ... .. . . . . ... . . . .... . ...... ... . . ... . . .. ..
lowQualScore : 7 7 7 7 7 7 7 7 77 7 77 7 5 7 7 7 7 77 9 9 1 0 9 9 9 9 1111 11111111 2 7777 6666666 11 11 11 11 4 22 2 7777777 1 1 1 99 2222 777 2 1 4 1 2 5555 2 99 1 4 88 2 1 99 0 0 9 4444 9 111 99 4444 2 2 99 44 888888 99 5555555555 44 55 444 5 5 44 5 9999 5 4 11 1 88 777 33333 2 777 33333 1 1 111 2 2 1111 1 3 22 5 111 4 4 4 0 5 7 333 5 5 7 888 777 0 444 9 0 7 7 3333 88 0 22 000 2 000 0 0000 7 33 7 00000000 3 7777 333 33 777777777 33 77777777777 0 0 3333333333 3 666666 7 7 7 66 000 7 7 7 7 7 0 00 5 000 3 33 7 333 33 7 0 0 5 555 2 0 0 2222 0 777777 777 3 7 555 0 0 55 55
consensus : NTGAATC-GA-GG-CA-GG-CT-A-CTTA-CAA--A-C--AAG-TTGNT-GTT-GCAGGGGTT-TC-AA-CAG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------AT-GGTC----G----T--TA--TA--ACG--ATCTA--GTTTGCC-AA-T-ACG-----AC-CTGC-CA-TTGG--GTC----AAATG---CT-G-TCTG-A-CGTG----TTT-CATA-CCAA-TTGTT--AGG-CC--GT-T-T-T--T-AT-ACAC-T-G--A---TTTTGACTA-CGGA-TTACTCC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-C--CG-GTC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAAC---C-AAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
Reference ( family-7 ) : NTGAATC-GA-GG-CA-GG-CT-A-CTTA-CAA--A-C--AAG-TTGNT-GTT-GCAGGGGTT-TC-AA-CAG-TCA-CGTTTAAAGNCAG-CATTT-C-G-CAA-A--TTCT--------AT-GGTC----G----T--TA--TA--ACG--ATCTA--GTTTGCC-AG-T-ACG-----AC-CTGC-CA-TTGG--GTC----AAATG---CT-G-TCTG-A-CGTG----TTT-CATA-CCAA-TTGTT--AGG-CC--GT-T-T-T--T-AT-ACAC-T-G--A---TTTTGACTA-CGGA-TTACTCC--GT----T-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GGCGGGT--GT---G-A-C--CG-GTC---GACAG-GGGATGCTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCCGTNT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--GTA-TTC---TGTTCG-GGACTTACGAGATTGATCGCTGTTCGTTATCTTCGCATTTTCATC---NTACATNTTTNTATT-CTGAGTGT--CATTATGTNCGAATAACAAATCGATAA--AGGTTATGTACGTCATAACACTGTGCANACGTAAT--AATTGT--CAATCTTTA--AAAGT----------CANTTNTAAAA----CCAAA-TACATTTATGTAAAGGCAAA-TATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACACAACCG--GAGG-TGGGATCG-GGTGCCTAGGGGGAGTA---AGCATCCCCT--GTT-ACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-TGGA-TCAG-G-TAAACG-GAACAATCCCGTAGTCAAATCATGGGTGTGNGAANAACGGCCTAAACAATGGCAAATGTTATTGCAGATGCCAG
gi|10 : TGATTC-GA-GG-CA-AG-TTGA-CTTA-CAA--A-C--AAG-TTGTTTATC-ACAGGGGTT-TC-GA-CAG-TCA-CGTTTAATGGCAG-CATTT-C-GACAAGA--TTC---------------------------------A--ATG--ATTTA--ATTTGCC-CA-T-ACA-----ATTCTGTTCA-TCTG--GTCC---AAACA---CTTGCTCTG-A-CATG----TTTACATA-GCAA-TTGTT--AGG-AC--GT-T-T-T--TCATTACAC-T-G--A---TTCTGAGTA-TGGACTTACTCCC-GT----C-TACCTGATC--AAG-A--CAAT-GGGCTCAC--GACGGGT--G----G-ACC--CG-GTC---AACA--GGGATGCTTACTCCTTCC--GAGG-------------CATCTC---T-----GGTGTGTC---C-----AAC-GGTCCGTTG-TATTGCCC-A-AC-CTT-GGTTTAGTATTCTATTT-TGGCATTT---ACGAGA-TTCGATT-TACGT-TT-CGTT---ATATTTTG-CCT-TTT--TCA-TTT---TG
gi|11 : aacattcgttgttacacatttgtgcagtgttagtgttgctcttccattacatagcaacattccataatcaaacttttatggtgtgtacgttctatcaactttattcgatctaccgccaaaagattgttctgtgattatgatcagtttt--------AT-GGTT----G----T--TA--TA--ACGTGGTC----ATTCACC-AG-T-ACA-----AC-C-GC-CA-TTGG--GTC----AAG-G---CTTG-TCTA-AACGTA----TT--CGTA-GGAA-TT-TC--AAG-CC--GT-T-C-T--T-AT-ACAC-C-G--A---TTTCGACTA-CGGA-TTAATCC--AT----T-TATCT-ACCAAAAA-A--CAAT-GGGATC-C--GGCAGAT--TT---G-A-C--AG-GTT---AAAAG-GGTATGCTTACT-C-TCC--TATGT-ATCTGA--TTCCACCTC---T-----GGTATATCAAGCTTTTAAGG-GGTCCG-TGTT-TTGCCC-A-ACTTTT-GT-----TA-TCTGTTTGGGG-ACCA---ATGAG--CC-GG-T-CACTG-TCACATTTTAAT-CTTTG-C---CTT--ataaagacgtttctaattttttgtaaa
gi|12 : tttaTGAATC-GA-GA-CATGT-TT-A-CTTA--AG--A-C--AAGTTTGTT-G-T-GCAGGGTTT-TC-AA-ttcataactaaattttacctttacgagtatggatatgctaaatattaaaaaaagcagatgttcttttccactctttactaaacaattgtaaattttatatacaaggtttacagttatagtttccagatgtgaccaaaactatcatggccgacgattg
gi|13 : atgtttatattcttgtgacgcagaattaattcagaagcttctacatgagataactcgacaattagatacatgtactaacgaactagaaatagaggacaccacagaggtctttccatgtctcgttccgtactgatatttttatagaacattgacattacgccaaacctaacttactcaactttataacaaacgggacggatttcagcttctccatgtcaactccccaatatttatgtagcaagtatccatcatcacatgtataatgggtgtgtatgtctctcaacttattcgatacgcaagcaagcttgttctgctatgatcaggttttA-A--TTAT--------AT-GGTC----G----T--TA--TA--ACG--ATTTA--GTTTGCA-AA-T-ACA-----AC-TTAC-GA-TTTG--GTC----AAATG-----------------------TTT-CACA-CTAA-TTCTT--AAG-CT--TT-TCT-T--T-AA-ACAT-T-G--A---TTTTTACTA-CGAA-TTACTTC--ATATACTGTACCTGATC--ACA-A--TAAA-GGGCCCGT--GGAGGGT--GT---G-A-C--CG-GTT---AACAG-GGTATGATTGCTCC-TCC--TGGGC-ACCCGA--TCCCACCTC----------------------------A-GACTCG-TG-T-TTGCCC-A-ACCCTT-TAATTTGTATTCCGAAT-AAG-ATTT---ATGAGA-CC-GG-T--ACTG-AT-CGTT---AC-CTTCA-C---C-----TA-TTC---
gi|14 : taggctgtttaagAATC-GA-GG-CA-GG-CT-A-CCGA-CAA--A-C--AAG-TTCAT-GTT-ACAGGGGTT-CC-AA-CCG-TCT-CGTTTGAAGTCGG-CATTT-C-A-CAG-----TCTATAGATGCAT-GGTC----G----T--TA--TA--ACG--ATCTA--GAGTGCC-A------------AC-CTGT-CG-TTGG--GTC----AAATG---AT-G-TTCG-A-CATG----TAT-CATA-CTAA-TTGTT--AGG-TC--GT-TCT-T--T-AT-ACAC-------------TGCCTA-CAGA-TTATTCG--AT----T-T-CCTTATC--AAA-ATTTAA---GGCTAAC--TGCGGGT--GT---A-A-C--CG-GTCTTGAACAG-GGGAT-TTTAC-----CC--AAGGT-ACTTGA--TCCCATCTC---T-----GGTATATC---C-----AGA-GGTCCG-TG-T-TTGACC-A-TCTATT-CCTTATCTATTatcttgcacaagcagaggattcgacacgatttgtacctttttaccaaaaaaggggtatgaagatctttaaaaa
gi|14 : agcctgttctatgcacggccagttttttCA-----AC-CTGC-TA-TTGG--GTC----AAATtgacccaatagcaggttg
gi|15 : agcctgttctatgcacggccagttttttaatcgaggcaggctaccgacaaacaagttcatgttacaggggttccaaccgtctcgtttgaagtcggcatttcacagtctatagatgcatggtcgttataacgatctagagtgccaacctgtcgttgggtcaaatgatgttcgacatgtatcatactaattgttaggtcgttctttatacactgcctacagattattcgatttccttatcaaaatttaaggctaactgcgggtgtaaccggtcttgaacaggggattttacccaaggtacttgatcccatctctggtatatccagaggtccgtgtttgaccatctattccttatct-A--TTCT--------AT-GGTC----G----T--TA--TA--ACA--ATTAA--GCTTACC-AA-T-ATG-----AC-CTAT-CA-TTGA--GTC----AAATG---CT-G-TCTG-A-TATG----TTT-CATA-GCAA-ATGTA--AAG-CC--GT-T-T-T--TCAC-ACAC-T-G--A---TTT-GACTA-CGGA-CTGTTCC--GT----T--ACCTGATC--AAG-A--CTAT-GAGCTCAC--GGCGGGT--GT---G-A-C--CG-GTC---AACAG-GGGATGCTTCTCCC-TCC--TAGGCCACCTGG--TCCCACCTC---T-----GGTGTGTC---C-----AGG-GGTCCG-TG-A-TTGCCC-A-ACTCTT-GTTTTTGTATTCTATTT-AGG-ACTT---ACGAAA-TT-GA-T-CACTGTTT-CGTT---AT-CTTTG-C---TTTACATG-TTT---TG-TCA-GAAC
gi|17 : TGTATC-GA-G--CA-GG-CT-AACTTA-CAAGGA-C--ACG-TTCCT-GTTTGCAGGGGTT-TC-AAACAG-TCA-CATT-AAAGACAGGCATTTTC-G-TAA-AAATTAT--------AT-GGTC----T----G--TA--TA--GCG--ATTTA--GTTTACC-CA-TGATG-----AC--TCC-CA-TCGA--GTC----AAATG---CT-A-TCTGAA-TGTG----TTT-CATA-GCAA-TTGTT--AAG-CC--GT-T-T-TCCC-AT-ACACTT-G--A----TTTGACAA-CAGA-cactctgattgcccacacaagtac
gi|18 : gtcaaacttctctatatttaatgtcgcaatagtttcaccatcaaacctgctgtggtgtgtatgtctctcaacgttattcaatacaaaaattgttctgccgtatgatcagatttAATC-AC-AG-CA-GG-CT-G-CTGT-CAA--T-C--ATT-TTGAT-GCT-TCAGGAGTT-TC-AA-CAT-TGC-CGTTTAAAGTCAG-TAGTT-T-G-CAA-A--TTCT--------GT-GGTT----G----T--TA--TA--TTG--ATTTA--GTTTGCC-AG-T-GCA-----AC-CTGC-CA-TTGA--GTC----AAATA---CA-G-TTTG-G-CATG----TTT-AATA-CCGATTTCCT--AGG-TC--AT-T-T-TG-T-AA-ACAC-T-G--A---TTTCGACTA-AGAA-TTA--AA--GT----T-TACCCAATC--AAGTA--TA---GATCTCAT--GGCGGAT--
gi|19 : atcaagctccagtggaagtctacgacatcactcatgttcgatgaacaagaacttgttctgcataggatcagttttttTGAATC-GA-GG-CA-AG-CT-A-CTTA-CAG--A-C--AAG-TTGTT-GTT-GCAGGGGTT-TC-AA-CAG-TCA-CGTTTAAAGGCAG-CATTT-C-G-TAA-A--TACT--------AT-GGTC----G----T--TA--TA--ACT--ATTTA--GTTTACC-AA-T-ATG-----AC-CTAC-CA-TTGA--GTC----AAATG---CT-G-TCTG-A-TGTG----TTT-CATAGCCAT-TTGTTGGAGGTCC--GT-G-T-TGCC-CT-ACAC-TCG--A---TTTT
gi|2 : atatttatgtagcaatattccatcatcaactgcatatggtgtgtatacatgtctcttaacttattcgatacgcaagagcttgttctgcgtatgatcagatttTGAATCCGA-GA-CA-AG-CT-A-CTTATCAG--A-CGAAAG-TTTCG-GTT-GCAGAGGTTATC-AA-AGGGTCA-CGGT-AAAGCCAG--ATTT-CCG-TAA-----TCT--------AT-GGTCCTATA----T--TA--TA--ACA--ATTTA--GTTGACTTAT-T-ATG-----AC-CTAC-AA-TTGA---TC----AAATG---CT-G-T-TG-A---TG----GTT-CATA-ACCA-TTGTT--AAG-CC---T-T-T-T--C-AC--CAA-T-GTGA---CTTTGACTA-C-GA-TT--TCC--G-----T-GACCTGATCTAAGG-A--CTAT--GGCT-AC--GG-GGGTAGGT---GTA-CAGGG-GTC---AACCA-GGTCTGCTTAC-----CC--TAGGC-ACCTGA--CCCCACTCG---TAACAGGATG-GTC---C-----AGGTGTTCCG-TA-A-TGACTC-A-ATTCTT-G--TTTGTATTATATTT-AGG-AC-T---GC-AGACTT-GA-TCCACTG-TT-C-TTAA-AT-CTT-G-C----CT--ACA-TTC---TGCTC
gi|20 : ccttagtagctgaccgttttatatcttatgaggcaatcattcaatctctacatgaaaaagaagaaggaaggaaaactttagctgtggggctttaatcaacatttcgatatattgacagtttttggtttttatcaacaataatatattcttcactatatttcgattcaataatttatcctaacgaacttagaaaatataaaggacaaccagcagagtctccatggctgattcgcgaaaaactgagatatttagttgaaccattgacaataacggcaaacaactaccaacttatgacaaacgggacgattcagttctccatcggcgtcaattccccatatgtagtgagagagaatatctccaatcatcacctgcatatggttgtatgtcttccaacttattcgaatacgaagagcttggttctggccgtaacacgatcaatgtttcttAATC-GA-AA-CA-GG-CT-A-CTTA-CAA--A-A--AAG-TTATT-TTT-GCAGGGATT-TC-AA-CAG-TCG-AATTTAAAGGCAG-CATGT-C-G-TAA-A--TTCT--------TT-GGTC----G----T--TG--TA--ACG--ATTTT--GCTTatattggatatactttaggaa
gi|21 : actacgatctttatagatgaaatattaacgggacgatttgagcttctccatcgtcaacttcccatatttatgtagcaaatgtagcaatattatattccatcatcacctgcatattatgttgtgtaggtctctcaacttattcgatacgcagagcttgttctgcgtatgatcagtttttt-ACA-----AC-CTGC-CA-TTGG--GTC----AAATA---AT-G-TCTG-A-CGTG----TTT-CTTG-GCTA-TTCTT--AAG-GT--GT-TCT-T--T-GT-ACAC-A-T--A---TTTTGACGA-CGGA-TTACTCC--GT----T-TACCTGATC--AGG-A--CTAT-GGGCTCAC--AACAGGT--AT---G-A-C--CG-GTC---TACAG-GGGATGCTTACTCC-TCT--TAGGC-ACCCGA--TCTCCCCTC---T-----GGTGAGTC---C-----AGG-GGTCAT-TG-T-TTGACC-A-ACTCTT------TGTTTTCT----------CTT---ACGAGA-TT-GA-T-CACTA-TT-CGTT---AT-TGTCG-C---CTT--agaattat
gi|22 : cccaaT-T-TAT--T-AT-ATAT-A-G--A---TTT-GTCAA-AGGA-TTACCCCC-GT----TCTAACTGATC--AA--A--CAATAGGGCTTATTTGAAGGGT--GT---G-A-C--CGCGTC---AGCAG-GGGG-GTTAATTAC-TCCAATAAGT-ACCTTACCTCCCA-------T-----GATACAAT---C-----AGG-GGTACG-TG-G-TCTCCG-ATATACTT-AATCTGTTGTT-CGT----GA-ACTT---ACAAGA-AT-GA-T-CTCTG-TT-CATT---AT-TTTTG-CA--TTT--TCA-TTC---Tttca
gi|22 : aaggtattctta---TGTTCGTGAACTTACAAGAATGATCTCTGTTCATTATTTTTGCATTTTCATT---CTACATCTTTCAATCATTAATTGT--CATacatctttcaatcattaattgtcatattaca
gi|23 : aaggtattcttatttattatatatagatttgtcaaaggattacccccgttctaactgatcaaacaatagggcttatttgaagggtgtgaccgcgtcagcaggggggttaattactccaataagtaccttacctcccatgatacaatcaggggtacgtggtctccgatatacttaatctgtAATC-GA-GGACA-GG-CT-A-ATGA-CAA--AGC--AA--TTAAT-GTT-ACattaca
gi|26 : cttccacatctgcctttcttatttagtgttatagttgatcataaatgttaatcggcaaacacggtccaaatttctaacctttctaacaaatgggataatttctaaattctctatagtcaatcttcccagcattttattttgctgctactcggtgtttttctcacaactggattcaaagtagcaagagtttcaacgtattacatttttaaaaataaaaaaCAGGGGTC-TC-AA-CAG-TCT-CGTTTGAAGTCCG-TATTT-T-G-CAA-A--TTCT--------AT-GGTC----GTTACT--TA--TA--ACG--ATCTA--GTTTGCC-AA-T-ATGTACAAAT-TTGG-CG-TTGG--GTC----AAATG---CT-A-TCTA-A-CGTG----TTT-CATA-CCAA-TTGGT--AGG-TC--GTGC-T-T--T-AT-ACAT-T-G--A---TTCTGACCA-TGGA-TGACTTC--GT----T-TACC-------------------AGGCTCAC--GGCGGAT--GT---G-A-T--CT-ATT---GACTA-GGGGTGTTTACTCC-TCC--TAAGC-A
gi|27 : aTTCAAAATCAG-CATTT-T-A-CAA-A--TTCT--------AT-GGTA----G----T--TA--TATAGCG--ATCTA--GTCTGCC-AG-T-A-G-----AA-CTGC-TA-T-GG--GTC----AAATG--------TATG-A-CATG----TTT-CATT-CCAA-TT----------C--GT-TAT-T--T-AC-ACAC-T------------GATTATCGAG-TT-------GT------------------AG---------GGGCTCAC--GGCGGAT--AT---G-A-C--CG-GTT---GACAG-GGAATTCATACTCT-TCC--AATGC-ACCTGA--TCCCACCTC---A-----GG-GTGTC---C-----GGG-GGTCCG-TG-T-TTACC
gi|28 : AATAATAAATCAATCAGGAGGGTATATTTG-AATAAAATTG-GCAATTGTAGA--AATTG-------CTTTACTGAAGTAATAGTGTTACATTTCTAAAATATGCGAAACTGCATT-ATGTAAAGGCAAA-TACAACGATCAGTGATCAA-TCTC-GTAAGTCCCAA-AT--AGAA---TAC-AAA-AC-A-AG-AG-TTGG-GCAA--ACACGGACCCCTGGACA
gi|29 : taGCTCAC--GGCGGAT--GT---G-A-T--CT-ATT---GACTA-GGGATGTTTACTCC-TCC--TAAGC-ACCTGA--TTACGCCGC---T-----GGTATATC---C-----AGG-GACCAG-TT-T-TTTTCCAA-ATTCTT-A-ATTTGTATTCCATAT-GTG-AGTT---ATAATA-TT-GA-T-CACTG-CT-CGTT---AT-CTTCG-t
gi|3 : TGCACC-AA-GG-GA-GG-TT-A-CTTA-CAA--A-C--AAG-----------------GTT-TC-AA-CAG-TCG-CGTCTAACGTCAG-CATTT-T-G-CAA-A--TTTT--------AT-GGTC----G--------A--TA----------TA--GTTTGCG-GG-A-ATG-----GC-CTAC-CA-TTGG--GTC----AAATG---TT-G-TCTG-A-CGTG----TTT-TATA-TCA--------------------C-T-T--C-AT-ACAC-A-G--A---TTTTGACTA-CGTA-TTACTCC--GT----T-TACCTGATC--AAT-A--CAAT-GGGATCAC--GGCGGGT--GT---G-A-A--AG-GGC---AACAG-GGGATGTTTACTCC-TCC--TAGGC-ACCTGA--TCCCACCTC---T-----GGTTTGTC---C-----AGG-GATCCG-TG-T-TTGCCC-A-ACTCTT-GTTTTTGTATTCTATTT-AGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTTG-T---TTT--GTA-TTC---TGTTTG-GGACTTACGAGCTTGATCGATGTTCGTTATCCTCGCATTTTCATCCATATACATATTTGCATT-TTGAATGT--TATTATGTACAAATAACAAATCTATAA--AGGTTAT-TA-ATCATAACACTGTGTAGACATAAT--AATGGT--CAATA--TA--AAAG------------AATTATAAAAC---CCAAA-TACATTTGTGTAAAGGCAAA-T-------ACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTGG-GCAA--ACACGGATCCCTGGACA-AACCA--GAGG-TGGGATCC-GGTGCCTAGGAGGAATA---AGCATCCCCT--GTTGACCG-GT-CACACCCG---CCGTGA-GCC-CATA----G-TCT-T-GA-TCAG-G-TAAACG-GAACAAT-CCGTAGTCAAATCA---GTGTGTGAATAACGGCCT--ATAATG--AAATGTTATTGCAGATGCCAGatcaccctttcttgtagagaaccaagggtcttatctggaagtatc
gi|30 : aTAAATATTTTTATT-CGGAGTGTGACATTATGTTTGAA---------GATAA--AG-TCATGTACGTC-TA-CA---TGCACATGTAATTCAATTGTGCCAATCTTTA--AAAGT----------CAGTTTTAAAA----------TACATTTATGTAAAGGTAAA-GATAACGAACAGTGATCAA-TCTC-GTAAGTCCTAA-AT--AGAA---TACAAAA-AC-A-AG-AG-TTtatgcttgtataaaaagtctatataatgaaattataaatgtgaaaatatgtcattgatacatgttt
gi|32 : AAGC-ACCTAA--TCCCACCTC---T-----GGTGTATC---C-----AGG-AGTCCA-TG----------------------TTTGTATTCCGTCT-AGG-ACTTGAAACGTAT-TT-GA-TGCATTG-aat
gi|32 : --TAAGC-ACCTAA--TCC-ACCTC---T-----GGTGTATC---C-----AGG-AGTCC-----------------------ATTTTTGTATTCCGTCT-AGG-ACTT-----GAAA-AT-GA-aaagattgagatttcattttcaagtcctagacggaatacaaaaatggactcctggatacaccagaggtggattaggtgctta
gi|34 : aagcacctaatcccacctctggtgtatccaggagtccatgtttgtattccgtctaggacttgaaacgtatttgatgcattgaaagattgagattA-A--TTCT--------ATAGGTA----A----T--GAAATA--AAG--GTCTATCATTTGCA-AAAC-ACA-----AG-CTTT-CAACTGGCCGTCCCCGAAATGTAGCT-G-G-TG-ATCGAA----TTT-CATA-CGAA-TTGTTGGAGG-CT---T-C-T-T--T-AT-AC
gi|35 : tatctagtcagattttttgtcaag-TCC--TAA---ACTTG---TCTCACATCATTT-----GGTATACC---A-----AGG-AGTCTG-TG-T-TTGCTC-A-ACTCTT-GTTTATGTATCCTGTTT-TGG-ACTT---ACGAGA-TT-GA-T-CACTG-TT-CGTT---AT-CTTCG-C---TTT--
gi|37 : tgatgaaCAACCGAGGAGGGTGGGATTGTGGTGTCTAGGGG-AGTATAAAGCATCCCTTTAGTTTGCTGCGT-CACACT-G---CCG-GATGCC-CATATAGCGCTCTATGGG-TCACTG-TAAAAGAGAACAATCACGTAGTCAAcaactacgcggg
gi|38 : A-TTGTT--CG--TT--AT-T-T-T--T-GT-GTTC-T-G-------TTTGACTA-CGGA-TTGTTCCTTGT----T-AACTTGACT--AAT-A--TGAG-GGACT-----GGAGTGTTAGTGAAG-A-C--CA-G-----AACAACGAGA-GCTAATTCA-T-C--TAGGA-ACAGGA--TCCC
gi|4 : AATC-AA-GA-CA-GG-CT-A-CTGA-CGA--A-C--AAG-TTGGT-GCT-ACAAGGG----------AG-TCA------ATAGTCAG-CATTT-C-G-CAA-A--TTCT--------AT-GGTC----G----A--TA--TA--ACG--ATCCA--GTTTGCC-AG-T-ATA-----AC-ATGC-CA-GTGG--ATC----AAATG---CC-G-TTTG-A-CAAGACAGTTT-CATA-CCAA-TTGCT--AGG-CC--GT-TCT-T--T-AT-ACAC-A-G--A---TTTTCACTA-C---------------------TACCTGATA--AAG-T--TTAA-GGATTCAC--AGTGGAT--GT---G-A-C--CG-GCG---GACAG-GGGATGCTTACTCC-TGC--TATGT-ATCTTA--TCTCACCTC---T-----GGTATATT---C-----AGA-GAGCTA-TG-T-TAGCCC-A-ACTCTA-A--TTTGTATTCCGTAT-AGA-AATT-----GAGA-TC-GA-T-CACTG-TT-CGTT---AT-CTTCATC---TTT--ATAGTGCGAGTATTCT-GGACGTACGgaa
gi|42 : tccactgagaagaatacatctcttactatggccttcttctagacactttgatatatcatgtatcgaaggcattgtatttgtaaacaattatcattttcaatcattcgatatattccagtgaactcgaaataaaagacaccatttgaagagtcttccacaactgctctcacgcatggatattgtattataaattttaatggtatacggacaactctgattttattcaacgttatggtaaacgggatgaatccagcttctctaatcgtcgacttcccatatttatgtaatattccattatcacctgtgtacagtgttgatgtctctcgaatgattcgatacgcaagaccatgttctgcgtatgatgagttttaaA--TCATGCCTC---T-----GGTATATT---A-----AGG-GGACTG-TG-T-TTGCCC-A-TCTCTT-A-TATTATATTCCGTAT-
gi|44 : cttacAGTGATCAA-TCTT-GTAATTCCT----TTGAGAA---TACAAAATGT-AGAG-AA-T--G-TCAA--ACAAGGATCCCGGGAcaatcggagcgtcac
gi|46 : ----AAATT---CT-G-TCTG----GTG----TAT-TATAGTGGA-TTGTT--A-G-CCGTGT-T-T-T--C-AT-A-AT-T-G--A----TTTGACAA-TGGA-TTaaaac
gi|47 : TGTAAAGGCAAA-TATAACGAATAGTGATCAA-TCTT-GTCAGGCCTAC-AT--AGAA---TACAAAA-AC-A-
gi|48 : TC-GTAGTCCCTAA-AT--C-AA---TATAAAA-AT-A-AG-AGATTGACGCAA--ACATTGATCCCTGGAAAC
gi|49 : taCTG---TCCCACCTC---T-----GGTATGTC---C-----A-G-AGTCTG-TG-T-TTGCCG-T-ATTCTC--TATTTATAT
gi|5 : cgTAAATC-GA-GA-CA-GG-CT-A-CTTA-CAA--A-C--AAG-CTGAT-GTT-GCAGAGGTT-TC-AA-GAG-ACA-CTTTTCAAATCAG-CTTTT-C-G-TAA-A--TTCT--------AT-GGTC----G----TTATA--TA--ACG--ATCTA--ATTTGCA-AA-T-ACA-----GC-CTTT-CA-TTGG--GTC----AAATG---TT-G-TCTG-A-CGTG----TTT-CATA-CCAA-TTGTT--AGG-CC--GT-TAT-T--T-AT-ACA
gi|51 : cacatttctttgattgattttatgaaacactgatctctaaacagtcggaattcccatgggcatgaattgtgctactttgttagctgacctgttcttatattcttacaaggcaaattttattcaaaagtttctacatgagaagaaaaaatctttagctgtggtttttaattcgatagttggatatatcgatatcgttttatctattgatagctattattttcatttatatgtcgattcgttatatcccattgaacaacagacaccacagagtcatcgtacttggatattttactgaacgcagacactatcggcaaactaacaactcaaactttatgacaaacgggacgatttcagcttctccactgtcaacttcccatatgtacaaatgtatgtagcaacatcccatcagcacttgtatatggtgtttattcgatatgaaagagcttgttctgtgaataatcagtttt-T--T-AT-ACGC-T-G--A---TTTTGACTA-CATA-TTACTCC--GT----T-CAGCTAATC--t
gi|52 : TT---AAGAGA-TT-GA-T-CACTG-TT-CATT---AT-CTTCA-C---TTT--
gi|53 : aaGG-AATT---ATGAGA-TT-GA-T-CACTG-TT-CGTT---AT-C
gi|54 : CCG-GT-CACACTCG---CCGTGA-GCT-CATA----G-TC
gi|6 : TGAATC-GA-GG-CA-GC-CT-A-CTTA-CAA--A-C--AAG-TTGTT-GTT-GCAGATGCT-TC-AT-AAG-TCA-CGTTTAAGGGCAG-CAATT-C-G-CAA-G--TTCT--------AT-GGTC----G----T--TA--TA--ACG--ATTTA--GTTTGCC-AG-T-ATG-----GC-CTGC-CA-TTGG--GTC----AAATG---CT-G-TCTG-A-TGCG----TT
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagttttT--GT---G-A-C--CG-GTC---AACAG-GGGATACATACTCC-T-----AGAC-ACCTGA--TCCCACCTC---T-----GGTGTGCC---C-----AGG-GGTCCG-TG-T-TTGCCG-A-ACTCTTGGTTTTTGTATTCTAATT-GGG-ACTT---ATGAGA-TT-GA-T-GACTG-TT-CGTT---GT-CTTTA-C---ATT--GTG-ATC---T-TTCgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaactcttggtttttgtattctaattgggacttatgagattgatgactgttcgttgtctttacattgtgatctttctttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|6 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgtT-CTTGG-T---TTTT-GTA-TTC---TAATTG-GGACTTATGAGATTGATGACTGTTCGTTGTCTTTACATTGTGATC---TT---TCTTTGTA---CTAAGTTT--AATTAtttgtactaagtttaattaaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|8 : cgctcatattgaacttaaattcgaaacgcaagagcttgttctgcgtatgatcagtttttgaatcgaggcagcctacttacaaacaagttgttgttgcagatgcttcataagtcacgtttaagggcagcaattcgcaagttctatggtcgttataacgatttagtttgccagtatggcctgccattgggtcaaatgctgtctgatgcgttgtgaccggtcaacaggggatacatactcctagacacctgatcccacctctggtgtgcccaggggtccgtgtttgccgaacTGATTC-GA-GG-CA-AGACT-A-CTTA-CAA--A-C--AAC-TTG----TC-GCAGGGATT-TTGAA-AAG-TTA-CGTTTAAAGGCAT-TATTT-C-G-CAA-G--TTCT--------AT-GGTC----G----T--TA--TA--ACG--ATCTA--CTATGCC-CA-T-ACA-----AA-CTGC-CA-ATGA--GTC----AAATG---CT-G-TCTG-A-CATG----TTT-CATA-GCAA-TTATT--AAG-CT--GT-T-T-T--TCAT-ACAC-T-G--AATTTTTTGACTG-CATA-TTATTCC--AT----T-TACTTGATC--AAG-A--CAAT-GGGCTCAA--GGCGGGT--GT---G-A-C--CT-CTC---GACAG-GGTATGCTTACGCC-TTT--TAGGC-ACCTGA--TCCCAACTC---T-----GGTATGCC---C-----AGG-GGTCTG-TG-T-TTGTCT-A-ACTCTT-G-TTTTGTATTCTATGA-AGG-ACTT---ACGAAA-TT-GA-T-CACTG-TT-CATT---AT-GTTTG-CCCTTTC--ATA-CTC---TGaattctcccagagagttaaggaggagttgcaaagacaaagtattttacatagaaaaaactaagtcctaggatcataactcctttaaataacaatgaacagcatttccacatctccacatttgttgtgccaagtttcatcaaaatcccaaatgggtttaggaggagtttcgaagacaaagtgagagggacagacaggcgacagcggtataccataatacgcccacatttttatgcgaacgtataaa
gi|9 : catcgtcaacttcccatatacatgtagcaacatccatcattacttgcatatgatatgcaagtctttcaacttaantagcaatataccatcatcacctgcatatgatatgaaagtctttcaacttattcgatacgcatgagcttgttctacgtattatcagatttTAAATC-GAAGG-CA-AG--T-A-CTTA-CAG--A-C--AAG-TTGTT-GCT-GTAGGGGTT-TC-AT-TTG-CCATTGTTTAAatgccatagaagtacat
gi|9 : tacttggataattttattgaacattgacatttaacggacaaaactaagtaatcaactttatgacaaacgggggacgaatttcagcttctccattcgtcaacttcccatatttatgttagcaatatcccatcgtcgccttgcgtatggtgtgtattgttctctcaacttatttcgattacgcaagagcttgttctgcgtatgatctgtttGTAAAGGCAAAAGATA-CGAACAGTG-TCAAATCTCCGTAAGTCGAAACATG-AGAACCATACAAAA-ACTA-AGTAG-TTGG-AAAGTGACACGGACCCCTGGACACAACCA--GAGG-TGGGATCAAGGTACCTAGAGGGAGTA---AGCTTCTCCT--GTT-ACCG-GTTCACACCCGGTCCCGTGA-GGCACATA----G-TCT-TGAAATCAG-GGTAAACG-GGACAATCCCGTAGTCAAATCATGGGTGTGAAAAAAACGGCTTAAACAATGGCAAATGgccgtttttttcacacccatgatttgactacgggattgtcccgtttaccctgatttcaagactatgtgcctcacgggaccgggtgtgaaccggtaacaggagaagcttactccctctaggtaccttgatcccacctctggttgtgtccaggggtccgtgtcactttccaactacttagtttttgtatggttctcatgtttcgacttacggagatttgacactgttcgtatcttttgcctttactagtgaaagtaaagttaagttcaaaaagttaaagtcatcacgttattcatataatgtagt
14 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TCTTTCAAACGACGAAATTCTACAAAATCACGCTTCAGCTTTAATCACATTTAATATCCCAGTCAATGGGACGGACGAATATGAATTATCGTACCTATGCTGGATTCATAAAAAAACCCTTACAAAGATACATTGCTGAGTCTAGTAAATGTTCCACCAAACCCCTGTCGTTACTCTTCACGAAAATATTGACTGCTGTCAAGGATCAACCTTCAGACGTATTGTGAAAGTACATATGCCAGAAGTGGTAATGTGGATTCTAAAAGATTCTTCTAAACAATTCTAGTGAATTTGAAATCCCAGAACCTTTCTCATATCAACAACATCGAATCATGTGATTTTTCAAAAAATTCATAACCATTCCGCACGATGAATTATAGGTAAGACTTTGTAAAGTTACAAACGATTGCTTCTTTAACAAAAATGGAAAGGAAATATTCATATCTAATGATCAGCCATTCACAAAATTACTCTGATTCTAAACACAAGTACTCCGAAGTTGATATCAAAGCAATGCTGGAGTTCCTCATTGACAATATCTTTGTAGTTTTTGGCAATCAGGTCTTCCAACATTCTGTTGTAATTCCAATTGTCACGAATTGTGTTCCTTTGTTAGCGGACCTATTTTTATATTCTAATGAGGCAGAATGCATTCAAAAGCTTCTACATGAAAAGAAGAAATCTGTAGCGGGGACCTTTAATTCGACATATTGACGAGGTTTAGTATTAATGGTTTTCATGCATATGTCGATTTAATCGAAACGAACTAGAAATAAAGGACACCACATAATAACCCATGCCTGCTTCAAACTTGGATATTTTATTGAACATTGACATTAACGGCAAACTATCTACTTAACGTTATGACAAATGGGACGATTTTA
Unaligned ( gi|7 ): ATTAAAAAGAACTTTATACCTTGTCAGAATGGATAAAAAGTATAAGAAGAATATTAAAATCCCGTATTACACAAATGAAAACAAAAGTGTGTATCACCTAGCCTTCTGTGTTTCGAAAACCAGAAGTGATCAAAGAATTAGATAGGATACATGAGAAATATGTTTTGGTTCCAGCTGGCAAAGTCTGTAACAACATTGTCTTCGTCTGTAAGGCTCATTATTACAACTGTATTTTGAACGAACTTGGTATTAACTCAACATTTGGTAATCGTACTTACACTCCAACTGCTCTTTCAAAAGAGGAAAATCTTCAAAATCGTGTTTCAGTTTTATACACTTTTAATATCCTAATCAATGGGACGGATGTTACCGTACCTATACTGGATTCCAAAACTTTGCAAAAAAAAAAACCCAAAAACAAAAACAAAAAAAAACCTAGCAAAGACACATTGCTGGATCAAGTAAATGTTCCATCAAGCCCCTGTCTTTACTCCTCACGAAAATTATTTACACTTGTGAAGGAGCATTGCTTTAGACGTATTGTTCAACAGCATATATGCAAGAAGTGGGGTAAATCAAATTTGGATTC
Unaligned ( gi|16 ): GATATATCAAAAAACTCTACACTTTAACCCACCATTTCGCACGATAAATTGGAAAAGACAACGACTTACGAGAAGTTTGTTTCGTTAACAATAAATGGAAAAGGGAATATTCTTATCTAGCGATCTGTCATTTCAAAAAATTATTCTGTTAAAACTCGCACTTCACATTCTACCCATCACAAGTACTGTATACTCTGAAGTTGAATATTTAAGCAATGCTGGCTTCCTCACTTTGTGAATGCGAGAAAATATCAATTTGCAATGTTCCTGTGAACCACAAGTTGTTCACCAATTCTCCATTTTCTGTATTCCATTTTTGATTGGACGTTCTCATTTTCTTA
Unaligned ( gi|24 ): ATTTTATATTGACAAAGGGATCCCCACTCTTAAAAATATTGGACAGCACTACCCTTGCAATATGCACTCTCTATCAAGTCTGTGTCTTTCTTGTACCCAAGTTTTCATCTCAAATATTCCTTCTCCAATAGAGGTACAATGATAATTAGGCAGGAGTTGCAGAGGAACAGAATGTCGAAAGGACAGACAGACAGACACAGCGCTGTTATGTCATGATACGCTCGCTTTTTATGTCGGGCATATAAAAAGT
Unaligned ( gi|25 ): AAAACAAAAAATGCATATTATCTACCAACTATGTTTAACCAACAAGAAGCGTATGAACCGAATTAGATAGGGAGTTTGAGGAATAAAAATATAGGCTCCAAGATGATAAAAGCTTGTACATATTGTCTTTTGTTTCTAAGGCTCATTAAAACAATAATTTTACAGGGAATTTGGATTTACGCCAACTTTAGTAATTCCAGTTTTACTTAAACTAAGTTCCTTCTCCAAAAGATGAAAAT
Unaligned ( gi|31 ): TTGGATGCTATATGAATACTCTGATACAATGGCGCAAGCTAGCAACCACTGTAATGACAAACATGGACATTTCATCTTCTCCAGCGTCAAGCTACCCATACTTATGAAATATTTATGAAACAAATCCATTATTAATTTGCATATGATATCTTATTCGATACGCAAGACGTGTCC
Unaligned ( gi|33 ): TGTTCCTTTTGGTTGCTGACCTGTTTTCGTATTCTTACGAGGCAGAATTTATTCAAAAGCTTCTTCAAGAGAAGAAAAAAATTTCTAACTGTGGCCTTTAACTCGACAGTCAGATATATTGATGACGTTTTATCTACTGAATATAATTATTTGCTTTTAT
Unaligned ( gi|36 ): CCTGTACGAGTATGGGATATTCTAAATGTTAAAAAAGCAGATGTTCTTTTCACTCTTTACTACAATTTATGGATACCAAGGTTACATTATAGTTCCAGATGTGACCAAAAAACTATCATGGCGACGATTGTT
Unaligned ( gi|39 ): AATGTTAAAATAAAGCAGATGTTCTTTTCACTCTTTACTACATTTATGATACAGGTTACAGTTATAGTTCCAGATGTGAACCAAAACTATCATGGCGACGATT
Unaligned ( gi|40 ): CCTTTTTGTCGTAATCTGATGAGGTAGAATTGAATCAAAAGCTTTACACCAGAAGCAGAAAATATCTTATCTTCGCCTTCATACATCGAC
Unaligned ( gi|41 ): AGGAGGAGTTGCAAAGACAAAGTGAAACAGACAGACAACAGCAGTATATAGCATAATACACCAGCATTTTTATACGGGCGTATAAAATTT
Unaligned ( gi|43 ): TTCTTACGAGGCAGAATTTTCTTAATTAAAAAAGTCTTCTACAGAAGAGGAAGAGAGAAATCTAGCTATATGCTTTT
Unaligned ( gi|45 ): AAACACTCTGATTCCAAACAGATATTCAGAGTAAAGCTGATATCAAACAGATTTTGGAGTTCTTCATT
Unaligned ( gi|50 ): TCGTACCTATACTTCATAAAAACTCTTACAAAGATACATTTCCAAG