lowQualScore : 11111111111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 4 111 1 22 111 11 1 22222222222222222222222222222 1 22222222222 111 11111 77777777777777777777777777777777777777777777777777777777777777777777 55555555555555555555555555555555555555555 3333333 11111 66666666666666666666666666 22222222 4444444444444444 22222 33333 11 2222 22222222222222222 111111111 3333333333333 111 1 111 4444444444444444444444444 3333333 222222222222222222 11111111 2222222222 111 111 1111 55555555555555 11 111111 444444444 111111 1111111 11111111 22222222222222222222 111111 111111 111 3333333 1 1111 5555555555555555555555555555555555555555555 1 8888 33 222
lowQualScore : 0 4 777 3 9 33 4 444 6666 77 2 4 777 4 5 66666666666666666666666666666 8 3 00000000000 1 999 3 888 11111 4 33333333333333333333333333333333333333333333333333333333333333333333 4 66 4 2 55 4 33333333333333333333333333333333333333333 6 2222222 4 4 777 777 4 22222 5 77 5 00000000000000000000000000 66 11111111 55 4 0000000000000000 11111 4 99 4 00000 11 2222 555 11111111111111111 3 333333333 2 6666666666666 777 2 4 55 44 666 4 0000000000000000000000000 3333333 4 777 666 3 555555555555555555 555 3 0 00000000 3 5 2222222222 99 5555 333 2 666 2 0000 2 2 11111111111111 0 44 5555 333 666666 77777 3 999 77 3 7777 000000000 111111 0 4 9999999 77777777 777 777 4 44444444444444444444 5 6 999999 1 2 3 999999 2 6 111 3333333 0 4 4444 4444444444444444444444444444444444444444444 7 6 5555 6 00 222 6
lowQualScore : . . ... . . .. . ... .... .. . . ... . . ............................. . . ........... . ... . ... ..... . .................................................................... . .. . . .. . ......................................... . ....... . . ... ... . ..... . .. . .......................... .. ........ .. . ................ ..... . .. . ..... .. .... ... ................. . ......... . ............. ... . . .. .. ... . ......................... ....... . ... ... . .................. ... . . ........ . . .......... .. .... ... . ... . .... . . .............. . .. .... ... ...... ..... . ... .. . .... ......... ...... . . ....... ........ ... ... . .................... . . ...... . . . ...... . . ... ....... . . .... ........................................... . . .... . .. ... .
lowQualScore : 0 0 555 5 2 99 0 000 1111 66 8 0 000 0 0 99999999999999999999999999999 2 6 99999999999 8 222 3 999 11111 0 44444444444444444444444444444444444444444444444444444444444444444444 0 00 4 7 55 0 55555555555555555555555555555555555555555 0 7777777 4 0 000 888 4 55555 0 99 7 11111111111111111111111111 11 11111111 55 0 2222222222222222 22222 4 77 4 88888 00 2222 888 11111111111111111 3 333333333 0 4444444444444 666 2 0 55 33 555 0 0000000000000000000000000 1111111 4 000 444 6 555555555555555555 444 1 8 55555555 1 2 2222222222 66 7777 000 7 000 9 3333 9 9 77777777777777 1 77 7777 555 555555 77777 1 777 55 6 7777 888888888 222222 1 4 0000000 44444444 888 888 4 77777777777777777777 7 7 222222 0 5 2 222222 5 0 777 5555555 0 0 7777 0000000000000000000000000000000000000000000 0 0 0000 0 00 000 0
consensus : TTCAATGTATAATNTC---TATGCCCCCGCCACAAAGT-G---GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGTCCT-CTGTTCTTCCGTCCTTNCGCGACGAGCAGTTT-T-----------CCGGAC---T-TTTTTT--CTAAACN----CCTTGAGATATTG-AACTGATTTTT------T---------G------T-GTATATT--AATG--A--GTT-----ACAGATC-AA-GTTCGAGTTTC-GTTCCGGTT-CGTTGA--TT-TTT-AT-T----G-AGT-------------------------TGTGCCCC----T--T-TAA-CTT---TGAAAAAT---T-AC-----T-G--T-T----GTGACCAN--------T-----TTTC--C----G--NACTT--T-TT------T-TANNAAACGCTTTGA---GATATT-GAACTGATT-TTT-T---GTATG-CAGG--TGT---AT-NT--NAA---TG----AGT-T-----A---CAGATC-AA-GT-NT-GAGTTTCGTTTCGGTTCGTTGATT--TTTGT-T---G-GAGTT-------------------------GTGCCCC--T----T-TAACT---TTGAAAAAT---T-AC-----T-------G--TTAC---G-ACCAG-----T--T-TTCCGG--A---T---TT--TT----TT---CT-AAA-C-CC-TT---GAGATATT-G-AACTGATTTT-----T---NGTATGCAGGTG-TATATT----AA-TGAG------TT-----A-CNG-ATC-AA-GT----TTGAG-TTT--GTT---TCGGTTCGTTGA-TTT--TTTTNTGGAGTTGTGCCCC------TTTAA---CT---TTG-AAA-A----C----TGACCT---TTTTG-TATGCAGA-T------TGCCGATTT------CAGTATTT---TTGA--TG--TTTCA-CTNANTTNTTTT-AAGG--ATTGAACTGNGTCCCTTTATATAGAAATCGTTGGACTTTGAAAAATTGCTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACT
Reference ( gi|1 ) : TTCAA-GTATAATTTT---TATGTCCTCGCCACTAAAT-G---GT--C-GGAACGT-ATA---GT-TTTACCATTGTCCGTCCTTCTGTTCTTCCGTCCTTCCGCGTTGAGCA-TTT-T-----------CCAGAC---T-TTTTTC--CTAAACC----CCTTGAGATATTG-AACTGATTTTT------T---------G------T-GTATGTT--AATG--C--GTT-----ACTCATC-GA-GTGCGCGTTTT-GTTCCGGTT-CATTGA--TT-TTGGAT-T----G-AGT-------------------------CGTGCCTC----A--T-TAA-CTT---TGAAAAAT---T-AC-----T-G--T-T----GCGACGAC--------T-----TTTC--C----A--TACTT--T-TT------T-TAAAAAACGCTTTGT---GATATT-GAGTTGATT-TTTAT---GTATG-TAGT--CGT---AT-TT--GAA---TG----AGT-T-----A---CAGATC-GA-GT-AT-GAGTTTCGTGCCGGTTTGTTCATT--TTTGT-T---G-GAGTT-------------------------GTGCCCC--A----T-TAACT---TTGAAAAAT---T-AC-----T-------G--TCAC---G-ACCAG-----T--T-TTTCAG--A---T---TT--TT----TT---CT-AAA-C-CC-TT---GAGATATT-G-AACTGATTTT-----T---AGAAAGCAGGTT-TATATT----AA-TGAG------TT-----A-CTG-ATC-GA-GT----TTGAG-TGT--GTT---TCGGTTCGTTGA-TTT--TTCTATGGAGTTGTGCCAC------TTTAA---CT---TTG-AAA-A----C----TGACCT---TTTTG-TATGCAGA-T------TGCTGATTT------CAGTATTT---TTGA--TA--TTTCA-CTAAATTGTTTT-A-----ATTGAATT-TA-CCCTTT---------------GA-TTTGAAAAATTACTGTTTTCAATTTTCTGGGTATCACTTAT----CCTGGTTATTTCCTACCTTGGACT
gi|11 : TTCAATGTATAATATCATGCATATTTATGCCAAAAAAT-G----C--C-GAGGCAT-ATA---GT-TTTACTCTTGTCCG----------------TCCTTTCGCAACCAACA-TTT-TC----------CCGGAC---T-TTTTTT--CTATACTGATGCTTTGAGATAT
gi|20 : TTT---TATGCCCCCGCCAAAAAAT-T---AC--CGGGGGCAT-ATA---GT-GTTACCaatgat
gi|9 : ---TATGCCC-CGCCA--AAAT-GTGAGC--C-GG--CGG-GGC---AT-TTTACCCTTGTCCG-------------CCAT---TACGCGACGAGCAGTTT-T-----------CCA-AT---T-TTTTTTTTCTGGACC----CCTTGAGATTTTc
gi|7 : ---TATGCCC-CGCCA--AAAT-GTGAGC--C-GG--CGG-GGC---AT-TTTACCCTTGTCCG-------------CCAT---TACGCGACGAGCAGTTT-T-----------CCA-AT---T-TTTTTTTTCTGGACC----CCTTGAGATTTTttgtatgcaggtgtatataactaagaaaatttaccgcaacaagtttctggccttttcttttttttt
gi|18 : ATGCCCCCGCCACAAAGTCG---GT----GGGATAT-GTA---GT-TTTACCCTTTTCCATCCTTTTGtgtatgcaggtgtatattaactaagaaaaatttaccgcaacaagttttctggcctttctttttttttttttttttt
gi|6 : TGCCCCCGCCACAAAGT-G---GT--C-GGGGCAT-ATA---GT-TTTACCCTTGCCCGTC----------------CTTCCAGAACGACCA-GTTGT-----------CCGGTCATTT-TTTTTT--CTAAATG----CAGTACGATATTG-AACCGATTTTT------TGTATGGAG-G------T-ATATATT--AATG--A--ATT-----ACAAATC-AATGT-CATCTTTC-GTTTTCGTT-CGTTGATTTT-TTTTAT-G----G-AGT-------------------------TGTGTCCC----T--T-TAA-CTT---TAAagatgagcagttatctgaatatttttctaat
gi|3 : gCGCC-CCAAGT-T---GT--C-GGGGCAT-ATACTAGT-TTTACCCTTGTCCATACGTCTGT--------CCCTCTGCAACGAGCA-GTT-T--------------GAG---T-TTT-----CTAAACT----CCTTGAGATATTG-AACTGATTGTT------TGTTTGCTG-G------T-GTATATT--AATA--A--GTT-----ACAGATC-AA-GTTCG-GTTTTCGTTTTGGTT-CGCTAA--TT-TTTAA--T----G-AGTTNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCC----T--T-TCA-CTT---TGAAAAGT---T-AC-----T-GGTT-T----ATGA--ACCAGTTTTTT-----TTTT--C----G--GACTT--T-TT------T-TCTGAAG-GCTTTGA---GATATTGGAACTGATT-TTTTTGTGGTATGCTGGT---GT---ATATT--AAA---C-----AGT-C-----ATTCCAGAcactgaaactaagg
gi|2 : cCCACAAAGT-G---GT--C-GGAGCAT-GTA---GT-TTTACGCTTGTCCGTCCTTCATTTCTTCTGTCCTTCCAAGATGAGCA-TTT-TTTTTTTCTTGACCAGAC---T-TTTTTTT-CTAAACC----CCATAAGATATTG-AACTGATTTTTGTATAAT---------GA-----T-ATATATT--AATG--A--GTT-----ACAGATT-GA-GTTTGAGTATT-GTTCTGGTT-CGATGA--TT-TTTGAT-G----G-AGT-------------------------TGTGTCCT----T--T-TAA-CGT---TGCAAATT---T-AC-----T-G--T-C----GTGACCAA--------T-----TTTC--C----A--GACTC--C-CCCCCCCCT-TAAAA---GCTTTGA---GATATT-GAGCTCATT-TTT-----GCATG-CAGA--TGT---AT-AT--TAT---TG----AGT-T---------CA-----------AT----TTTCGTTTCAGTTCGTTTATT--TTCGA-T---G-GAGTT-------------------------GTGTCCC--T----T-TAACT---TTGAAAAAT---T-GC-----T-------G--TTAT---G-ACGAG-----T--T-TTTCCG--AAC-T---TTAATT----TG---TC-AAA-C-GC-TT---TAGGTATT-G-AACTAAGTTT-----T---TGTATACAGGTG-TATATT----AA-TGAG------TT-----A-CAG-ATC-GA-GT----TTGAG-TTTC-ATT---TTGGTTTGATTA-TTTTGTTTTATGGAGTTGTGTCCC------TTTGA---CT---TTG-AAA-AAACCC----TGA-TT---TTTTG-TATGCAGA-T------TGCCTATTT------CAGTATTA---TTAA--
gi|14 : aAAGT-G---GT--T-GGGGCAT-ATA---GT-TTTACTCTTGTCT----TGCTGTTCTTCTGT--------AACGAGCAGTTT-T-----------CCAGAC---T-TGTTTT--CTAAATT----CCTTGAGATATTG-AAGTGATggtt
gi|12 : caT-G---GTTGC-GGGGCATTATA---GTCTTTACTCTTGTC--TTTTGCTGTTCTTTC----TGACGAGC--AGTA-TTT-T-----------CCAGAC---T-TGTTTT--CTAAATT----CC-TGAGATATTG-AAGTGA---TT------T---------G------T-GT
gi|8 : aggTGACCAGTTT-T-----------CCGAAC---T-TTTTTT--CTGAATG----CTTTAAGATATTG-AACCAATTTTT------T---------G------T-AT
gi|10 : aatgagttacaaatcaagtttgagtttcgatttggttcgttgattttgatggagttatgcccctttaactttgaaaaattaatgtttacagttaTGACCAGTTT-T-----------CCGGACA--TATTTTTT--CTAAACG----CTTTAAGATATTG-AGCTGGTTTTC------TTATATGCAGG------T-GTATATT--AATG--A--GTT-----ACGGATC-AA-GATCGAGTTTT-GTTTGAGTT-TGTTGA--TT-gcaggtgtatattg
gi|4 : actttaaaaaaatattgctaCA-GTT-T-----------CCGGAC---T-TTTT----CTTAACG----CTTTG-TATATTA-TAATGATTTT--------------------------ACA-GTT--GG-------------------ATC-------CG-GTTTC-GCTTAAGTT-CGTT-A--TT-TTG--T-T----G-AGT-------------------------TG-GCCCCTTAAAGTT-TAA-CTTGGTTGAAGAAT---A-AC-----TTG--T-T-----TGACCAG--------T-----TT-C--C----G--GACTT--T-TT------TCTAAAA
gi|16 : tatatatttaaaaaatgcgtgtacagattaaatttagtttttgtcccgtttcaatgatttttgcatgtgagttgtaccccttataacccttaaattactgttatgtcCATAT---T-TTTTTT--CTCAACC----CCT-------TTG-AACTGATTTTTAGAA--T---------GCAGGGAT-ATATTTTCAAAT-------TT-----ACAGATC-AA-GC-TGAGTTTT-GTTCTGG
gi|19 : tTTT--CTGAAGG----CTTTGAGATATTGGAACTGATTTTT------T---------T------TGGTATGCT--GGTG--
gi|17 : ---------G------T-GCATATT--AACG--A--GTTTATATACAGATAAGA-GTTCAAGTTTT-GTTCCGGTT-AGTCGA--TT-TTTTTT-TG---G-AGT-------------------------TGTGCCCC----tatattaa
gi|13 : atatgcag---------G------T-GTATATT--AATGACCTAGTT-----A---ATC-AA-GTTTT--TTTT-GTTAAATTTTCATTGA--TT-TT---T-TTCAGG-AGT-------------------------TGTGCCCCT---T--T-TAG-CTT---AAAAAAATAGAT-AC-----T-
gi|8 : tatgtag--AATG--A--GTT-----ACAAATC-AA-GTTTGAGTTTC-GATTTGGTT-CGTTGA--TT-TTG-AT-G----G-AGT-------------------------TATGCCCC----T--T-TAA-CTT---TGAAAAAT---T-AA-----T-G--T-TTACAGTTATGACCAG-----T-----TTTC--C----G--AACTT--T-TT------T-T-CTGAATGCTTTAA---GATATT-GAACCAATT-TTT-T---GTATG-CAGG--TGT---ATATT--G
gi|4 : TTTT-GTCCCGTTT-CAATGA--TTTTTGCATGT----G-AGT-------------------------TGTACCCC----T--TATAACCCT---T---AAAT---T-AC-----T-G--T-T----ATGTCCA---------G-----TTTC--C----G--GACTT--T-TTC-----T-T----AACGCTTTGT----ATATT-ATAATGATT-T----------TA-CAGT--TGG---AT-CC--G------------GT-T-------------TC-GC-TT-A---AG-TTCG-------TTATT-------TTGT-T-----GAGTT-------------------------G-GCCCCTTAAAGTT-TAACTTGGTTGAAGAAT---A-ACT----T-------G--TT-T---G-ACCAG--------T-TTCCGG--A---C---TT--TT----TT---CT-AAA-
gi|15 : tatatatttaaaaaatgcgtgtacagattaaatttagtTGA--TT-TTTTGT-T----GGATT-------------------------TGTGCCCC----T--T-TAA-CTT---TGAAACAC---T-Aa
gi|5 : ----G-AGT-------------------------TGTACCCC----T--T-TAA-CTT---TGAAAAAC---TGACCTTTTT-G--TAT----G-GA-GAT--------TGCTTATTTCAGC----A--TTCTTAATGTT------T-CACTAAGTGCTTC-TAAAGATATT-GAACTAATTCTTTAT---ATA-G-AAAT--CGTTGGAT-TT--GAA----A----AAT-T-----A---Cactttttatatgcagattgcctattttgtttcacttgatgcttttcaa
gi|10 : gttgttgA-CTT---TAAAAAAA---T-AT-----T-G--C-T----ATGACCAG--------T-----TTTC--CGGACA--TATTT--T-TT------C-TAAA---CGCTTTAA---GATATT-GAGCTGGTT-TTCTT---ATATG-CAGG--TGT---AT-AT--TAA---TG----AGT-T-----A---CGGATC-AA-G--ATCGAGTTTTGTTTGAGTTTGTTGATT--tgctttctattttctgggtatcactcataaaccttggggatttccttcattgaacttaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
gi|6 : CGACCAG--------T-----TGTC--C----GGTCATTT--T-TT------T-TTCTAAATGCAGTAC---GATATT-GAACCGATT-TTT-T---GTATG-GAGG--TAT---AT-AT--TAA---TG----AAT-T-----A---CAAATC-AATGTCAT-C--TTTCGTTTTCGTTCGTTGATT--TTTTT-TAT-G-GAGTT-------------------------GTGTCCC--T----T-TAACT---TTAA
gi|16 : gtgcccccgccacaaagtggtcggggcatatagttttacccttgcccgtccttccagaa--C----A--TATTT--T-TT------T-TCTCAACCCCT-----------TT-GAACTGATT-TTTA----GAATG-CAGGGATAT---AT-TTTCAAA---T-------T-T-----A---CAGATC-AA-GC--T-GAGTTTTGTTCTGGcactgaaactaagg
gi|3 : tT--T-TT------C-TAAA---CTCCTTGA---GATATT-GAACTGATT-GTT-T---GTTTGCTGGT---GT---AT-AT--TAA---TA----AGT-T-----A---CAGATC-AA-GT-TC-GGTTTTCGTTTTGGTTCGCTAATT--TTTAA-T---G--AGTTNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCC--T----T-TCACT---TTGAAAAGT---T-AC-----T-------GGTTTAT---GAACCAGTTTTTT--T-TTTCGG--AC--T---TT--TT----TT---CTGAAG-G-CT-TT---GAGATATTGG-AACTGATTTTTTTG-T---GGTATGCTGGTG-TATATT----AA-ACAG------TC-----A-TT
gi|17 : ccgccccaagttgtcggggcatatactagttttacccttgtccatacgtctgtccctctgcaacgagcagtttgagTATG-CAGG--TGC---AT-AT--TAA---CG----AGT-TTATATA---CAGATAAGA-GT-TC-AAGTTTTGTTCCGGTTAGTCGATT--TTTTT-TT--G-GAGTT-------------------------GTGCCCC--ccaga
gi|13 : aTATG-TAGG--TGT---AT-AT--TAA---TGACCTAGT-T-----A------ATC-AA-GT--T----TTTTTTGTTAAATT-TTCATTGATTTTT-TTCAG-GAGTT-------------------------GTGCCCCT-T----T-TAGCT---TAAAAAAATAGAT-AC-----T-------
gi|4 : T---AT-TT--AAAAAATG----CGTGT-----A---CAGATT-AA-AT-TT-AGTTTTTGTCCCGTTTCAATGATT--TTTGCAT---GTGAGTT-------------------------GTACCCC--T----TATAACC---CTTAAA--T---T-AC-----T-------G--TTAT---G-TCCAG--------T-TTCCGG--A-------CT--TT----TT---CT-TAA-C-GC-TT---TGTATATT-A-TAATGATTTT--------------ACAG--T-TG--------------------------------G-ATC-CG-GT----TT------C--GCT---TAAGTTCGTT-A-TTT-----TGTTGAGTTG-GCCCCTTAAAGTTTAA---CTTGGTTG-AAG-A----A----TAACTT---GTTTG-
gi|8 : tataAA---TG----AGT-T-----A---CAAATC-AA-GT-TT-GAGTTTCGATTTGGTTCGTTGATT--TT-GA-T---G-GAGTT-------------------------ATGCCCC--T----T-TAACT---TTGAAAAAT---T-AA-----TGTTTACAG--TTAT---G-ACCAG-----T--T-TTCCGA--AC--T---TT--TT----TT---CT-GAA-TGCT-TT---AAGATATT-G-AACCAATTTT-----T---TGTATGCAGGTG-TATATT----accagtttccggacttttttctaaaa
gi|15 : TT--TTTGT-T---G-GATTT-------------------------GTGCCCC--T----T-TAACT---TTGAAACAC---T-Ag
gi|5 : tgatTTGT-T---G-GAGTT-------------------------GTACCCC--T----T-TAACT---TTGAAAAAC---TGACCTTTTT-------G--T-ATGGAG-ATTGC-----T--TATTTCAGC-A---T---TC--TTAATGTTTCACT-AAG-T-GC-TTCTAAAGATATT-G-AACTAATTCTTTATAT---AGAAATC--GTTGGAT-TT----GA-AAAA------TT-----A-CTG-actttttatatgcagattgcctattttgtttcacttgatgcttttcaa
gi|10 : gACT---TTAAAAAAA---T-AT-----T-------G--CTAT---G-ACCAG-----T--T-TTCCGG--A---CATATT--TT----TT---CT-AAA-CGCT-TT---AAGATATT-G-AGCTGGTTTTCT---T---ATAT-GCAGGTG-TATATT----AA-TGAG------TT-----A-CGG-ATC-AA-GA----TCGAGTTTT--GTT---TGAGTTTGTTGA-TTctttctattttctgggtatcactcataaaccttggggatttccttcattgaacttaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
gi|9 : AT---T-AC-------------G--CGAC---G-AGCAG-----T--T-TTCCA---ATTTT---TT--TT----TT---CT-GGACC-CC-TT---GAGAT------------TTTT-----T----GTATGCAGGTG-TATATA----AC-TAAGAAAAT-TT-----A-CCGCAAC-AA-GT----TT
gi|7 : tatgccccgccaaaatgtgagccggcggggcattttacccttgtccgccAT---T-AC-------------G--CGAC---G-AGCAG-----T--T-TTCCA---A---T---TT--TT----TTTTTCT-GGA-C-CC-CT----------T-G-A---GATTTT-----T----GTATGCAGGTG-TATATT----AACTAAGAAAAATTT-----A-CCGCAAC-AA-GT----TTctggccttttcttttttttt
gi|3 : tatgccccgccaaaatgtgagccggcggggcattttacccttgtccgccC-----T-------G--CAAC---G-AGCAG-----T--T-TG--AG--------------TT----TT---CT-AAA-CTCC-TT---GAGATATT-G-AACTGATTGT-----T---TGTTTGCTGGTG-TATATT----AA-TAAG------TT-----A-CAG-ATC-AA-GT----TCG-G-TTTTCGTT---TTGGTTCGCTAA-TTT--TTA-AT-GAGTTNNNNNNN------NNNNN---NN---NNN-NNN-N----NNNNGTGCCCC---TTTCACTTTGAAAAGT------TACTGGTTTATGAACCAGTTTTT---TTtctggcctttctttttttttttttttttt
gi|14 : ccgccccaagttgtcggggcatatactagttttacccttgtccatacgtctgtccctC-----T-------G--TAAC---G-AGCAG-----T--T-TTCCAG--A---C---TTG-TT----TT---CT-AAATT-CC-TT---GAGATATT-G-AAGTGATtttcggactttttttctgaaggctttgagatattggaactgatttttttgtggtatgctggtgtatattaaacagtcattccaga
gi|6 : caaagtggttggggcatatagttttactcttgtcttgctgttcttAC---G-ACCAG-----T--T-GTCCGGTCA---T---TT--TT----TTTT-CT-AAA-T-GCAGT---ACGATATT-G-AACCGATTTT-----T---TGTATGGAGGTA-TATATT----AA-TGAA------TT-----A-CAA-ATC-AATGTCATCTTTCG-T-----TT---TC-GTTCGTTGATTTT--TTTTATGGAGTTGTGTCCC------TTTAA---CT---TT--AAC-A----C----TGA
gi|12 : gtgcccccgccacaaagtggtcggggcatatagttttacccttgcccgtccttccagaAC---G-AGCAG-----TATT-TTCCAG--A---C---TTG-TT----TT---CT-AAA-T-TC-CT---GAGATATT-G-AAGTGATTTaactaagg
gi|16 : aggtggttgcggggcattatagtctttactcttgtcttttgctgttctttctg---T---TT--TT----TT---CT-CAA-C-CC-CT---------TT-G-AACTGATTTT-----T---AGAATGCAGGGA-TATATTTTCAAA-T---------TT-----A-CAG-ATC-AA-G-----CTGAGTTTT--GTT---CTGGgtgt
gi|19 : tcatatT----TT---CT-GAA-GGCT-TT---GAGATATT-GGAACTGATTTT-----TTTTGGTATGCTGGTG-TATATT----AA-
gi|17 : GCAGGTG-CATATT----AA-CGAG------TTTATATA-CAG-ATAAGA-GT----TCAAG-TTTT-GTT---CCGGTTAGTCGA-TTT--TTTTTTGGAGTTGTGCC
gi|13 : atatGTAGGTG-TATATT----AA-TGAC------CT-----AGTTA-ATC-AA-GT----TTT-T-TTT--GTTAAATT--TTCATTGA-TTT--TTTTCAGGAGTTGTGCCCC------TTTTA---GC---TTA-AAA-A----cc
gi|8 : tat----AA-TGAG------TT-----A-CAA-ATC-AA-GT----TTGAG-TTTC-GAT---TTGGTTCGTTGA-TTT--TG--ATGGAGTTATGCCCC------TTTAA---CT---TTGAAAA-A----T----TAA---------TG-TTTACAG--T------TA-TGA--C------CAGT-TTT---CCGAACTT--TTTTT-CTGAA-TGCTTT-AAGAT-ATTGAAaatagatact
gi|15 : TGA-TTT--TTTGTTGGATTTGTGCCCC------TTTAA---CT---TTG-AAACA----C----TAA-CT---TTTTA-TATGCAGA-T------TGCCTATTT---------TGTTTCACTTGA--TGCTTTTCA-ccaattttttgtatgcaggtgtatattg
gi|5 : TGGAGTTGTACCCC------TTTAA---CT---TTG-AAA-AA---C----TGACCT---TTTTG-TATGGAGA-T------TGCTTATTT------CAGCATTC---TTAA--TG--TTTCA-CTAAGTGCTTCT-AAAGATATTGAACT-AA-TTCTTTATATAGAAATCGTTGGA-TTTGAAAAATTACTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACTa
gi|2 : gttgtCCCC------CTTAAAAGCT---TTG-AGATA----T----TGAGCTCATTTTTG-CATGCAGA-TGTATATTATTGAGTT------CA--ATTT---TCG-------TTTCAGTTCGTTTATTTTCG-----ATGGAGTTGTGTCCCTTT---------------AACTTTGAAAAATTGCTGTTtaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
Alignments
lowQualScore : 1 1111 1111 99999999999999999 111 222222222222222222222 11111 4444444444444444444444444444444444 11111 111111 111 22 6666666666666666666666666 2222222222 2222222 444444444444 333333 66666666666666666666 11 333333 111 11 111 222 111111 1111 33333333333 11111 1 1111 11111 111111 2222 1 3333333 9999999999999999999999999999 2222
lowQualScore : 5 1 11 2222 4 1 3 5555 55 3 66 666 3 99999999999999999 111 2 22 55 000000000000000000000 4 00000 2 0 5555555555555555555555555555555555 44444 5 666666 5 5 66 0 2 111 22 99 6666666666666666666666666 6 6 1 7777777777 8 1111111 1 222222222222 5 3 6 6 555555 1 3 3 777 77777777777777777777 0 99 6 7 888888 777 44 1 6 9 000 77 000 5 6 6 888888 5 6 1 0000 5 0 00000000000 22222 2 0 5 0 3333 33333 222222 2 0 99 1 8 5555 99 5 1 77 3 1 1 88 8888888 9999999999999999999999999999 6 4 4444 55 4 3
lowQualScore : . . .. .... . . . .... .. . .. ... . ................. ... . .. .. ..................... . ..... . . .................................. ..... . ...... . . .. . . ... .. .. ......................... . . . .......... . ....... . ............ . . . . ...... . . . ... .................... . .. . . ...... ... .. . . . ... .. ... . . . ...... . . . .... . . ........... ..... . . . . .... ..... ...... . . .. . . .... .. . . .. . . . .. ....... ............................ . . .... .. . .
lowQualScore : 5 0 55 1111 5 5 6 5555 00 6 33 444 6 44444444444444444 222 4 33 55 111111111111111111111 0 44444 0 7 3333333333333333333333333333333333 33333 7 444444 7 7 88 7 2 777 55 77 7777777777777777777777777 7 7 0 0000000000 0 8888888 0 888888888888 2 5 7 7 777777 0 3 8 000 33333333333333333333 7 33 7 3 333333 555 00 5 7 3 000 99 000 7 7 7 555555 7 7 0 6666 0 2 66666666666 55555 8 0 0 4 0000 77777 333333 2 7 22 0 0 0000 00 0 2 55 0 0 0 00 0000000 0000000000000000000000000000 0 0 0000 00 0 0
consensus : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTC-CGT-C-----TT--TTCCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAAC----CCCTTGAGATATTGAACTGATTTTT------T------G-T--------GT--------ATATT-----AA-TGAG------T-TACAG-ATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA---TTTTTG-AT-NGAGTT-------------------------GTGCCCCTT-TAA-CTTTGAAAAATTACT-------G--TTATG-ACCA-----NTTTTCCGGACTTTTTC-----TTANNGAACGCTTTGAGATATT-G-AACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTTA---CAGATCGAGT-T---TTTCGTTTCGGTTCGTTNATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTT--TTTTTTGGAGTTGTGCCCCTTTAACTTTGAAA-AA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTTTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGA-TTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
Reference ( family-305 ) : TTCAATGTATAATNTCTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTC-CGTCCT-CTGTT-CTTCCGTCCTTNCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAAC----NCCTTGAGATATTGAACTGATTTTT------T------G-T--------GT--------ATATT-----AA-TGAG------T-TACAG-ATCAAGTTCGAGTTTCGTTCCGGTTCGTTGA---TTTTT--AT-TGAGTT-------------------------GTGCCCCTT-TAA-CTTTGAAAAATTACT-------G--TTGTG-ACCA-----NTTTTCCGNACTTTTT------TTANNAAACGCTTTGAGATATT-G-AACTGATTTTT-T----GTATGCAGGTGTATNTNAATGAGTTA---CAGATCAAGTNTGAGTTTCGTTTCGGTTCGTTGATTTTTGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGTTACGACCAG-TTTTCCGGAT---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TNGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTT--TTTTNTGGAGTTGTGCCCCTTTAACTTTGAAA-A----CTGACCTTTTTGTATGCAGATTGCCGATTTCAGTATTTTTGATGTTTCACTNANTTNTTTTAAGGAT--TGAACTGNGTCCCTTTATATAGAAATCGTTGGACTTTGAAAAATTGCTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACT
gi|1 : TTCAA-GTATAATTTTTATGT----CCTCGCCACTAAAT-G----GT--C-GGAACGT-ATA---GT-TTTACCATTGTC-CGTCCTTCTGTT-CTTCCGTCCTTCCGCGTTGAGCA-T--TTT----------CCAGA--C---TTTTTTC-CTAAAC----CCCTTGAGATATTGAACTGATTTTT------T------G-T--------GT--------ATGTT-----AA-TGCG------T-TACTC-ATCGAGTGCGCGTTTTGTTCCGGTTCATTGA---TTTTGG-AT-TGAGTC-------------------------GTGCCTCAT-TAA-CTTTGAAAAATTACT-------G--TTGCG-ACGA-----CTTTTCCATACTTTTT------TTAAAAAACGCTTTGTGATATT-G-AGTTGATTTTTAT----GTATGTAGTCGTATTTGAATGAGTTA---CAGATCGAGTATGAGTTTCGTGCCGGTTTGTTCATTTTTGTTGGAGTTGTGCCCC------ATTAACT---TTGAAAAATTAC-TGTCACGACCAG-TTTTTCAGAT---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TAGAAAGCAGGTTTATATT----AA-TGA----G------TT-----ACTG-ATCG-AGTTTGAG-TGT-G---TT---TCGGTTCGTTGATTT--TTCTATGGAGTTGTGCCACTTTAACTTTGAAA-A----CTGACCTTTTTGTATGCAGATTGCTGATTTCAGTATTTTTGATATTTCACTAAATTGTTTTA---AT--TGAATTTA--CCCTTT-----GA-----------TTTGAAAAATTACTGTTTTCAATTTTCTGGGTATCACTTAT----CCTGGTTATTTCCTACCTTGGACT
gi|10 : ACT---TTAAAAAAATAT-TGCTATGACCAG-TTTTCCGGACATATTT--TTT---CT-AAACGCT-TTAAGATATTGAGCTGGTTTTCTTATATGCAGGTGTATATT----AA-TGA----G------TT-----ACGG-ATCA-AGATCGAGTTTT-G---TT---TGAGTTTGTTGATT
gi|11 : TTCAATGTATAATATC-ATGCATATTTATGCCAAAAAAT-G-----C--C-GAGGCAT-ATA---GT-TTTACTCTTG------------------TCCGTCCTTTCGCAACCAACATT--TTC----------CCGGA--C---TTTTTTT-CTATACTGATGCTTTGAGATAT
gi|12 : AGGT-G----GTTGC-GGGGCATTATA---GTCTTTACTCTTGTC-----------TT-TTGCTGTTCTTTC-TGACGAGCAGTATTTT----------CCAGA--C---TTGTTTT-CTAAAT----TCC-TGAGATATTGAAGTGA---TT------T------G-T--------GT--------aatgat
gi|13 : TATGTAGGTGTATATT----AA-TGACCTAG------TT-----A----ATCA-AGTTTT-T-TTT-G---TTAAATT--TTCATTGATTT--TTTTCAGGAGTTGTGCCCCTTTTAGCTTAAAA-A----
gi|14 : CAAAGT-G----GT--T-GGGGCAT-ATA---GT-TTTACTCTTGTCTTG-----CTGTT-CTTCTGT--------AACGAGCAGT--TTT----------CCAGA--C---TTGTTTT-CTAAAT----TCCTTGAGATATTGAAGTGATaatagatact
gi|15 : TGATTT--TTTGTTGGATTTGTGCCCCTTTAACTTTGAAACA----CTAAC-TTTTTATATGCAGATTGCC--------TATTTT----GTTTCACTTGATGCTTTT
gi|16 : T---TTT--TTT---CT-CAAC-CC-CT------TTGAACTGATTTT-TAGAATGCAGGGATATATTTTCAAA-T-------------TT-----ACAG-ATCA-AG-CTGAGTTTT-G---TT---CTGGcaa
gi|17 : tcatatTATGCAGGTGCATATT----AA-CGA----G------TTTATATACAG-ATAAGAGTTCAAG-TTTTG---TT---CCGGTTAGTCGATTT--TTTTTTGGAGTTGTGCCCC
gi|18 : aATGC----CCCCGCCACAAAGTCG----GT----GGGATAT-GTA---GT-TTTACCCTT------------------TTCCATCCTTTTGAGATGAGCAGT--TAT----------CTGAA------TATTTTT-CTAA
gi|19 : AAGGCTTTGAGATATT-GGAACTGATTTTT-TTTG-GTATGCTGGTGTATATTAAt
gi|2 : tttctgCCACAAAGT-G----GT--C-GGAGCAT-GTA---GT-TTTACGCTTGTC-CGTCCT-TCATTTCTTCTGTCCTTCCAAGATGAGCATT--TTTTTTTTCTTGACCAGA--C---TTTTTTTTCTAAAC----CCCATAAGATATTGAACTGATTTTTGTATAAT------GAT--------AT--------ATATT-----AA-TGAG------T-TACAG-ATTGAGTTTGAGTATTGTTCTGGTTCGATGA---TTTTTG-AT-GGAGTT-------------------------GTGTCCTTT-TAA-CGTTGCAAATTTACT-------G--TCGTG-ACCA-----ATTTTCCAGACTCCCCCCCCCCTTAAAA---GCTTTGAGATATT-G-AGCTCATTTTT------GCATGCAGATGTATATTATTGAGTT---------CAA---T---TTTCGTTTCAGTTCGTTTATTTTCGATGGAGTTGTGTCCC------TTTAACT---TTGAAAAATTGC-TGTTATGACGAGTTTTTCCGAAC---TTTAATTT---GTCAAAC-GC-TTTAGGTATTGAACTAAGTTT-TTGTATACAGGTGTATATT----AA-TGA----G------TT-----ACAG-ATCG-AGTTTGAG-TTTCA---TT---TTGGTTTGATTATTTTGTTTTATGGAGTTGTGTCCCTTTGACTTTGAAA-AAACCCTGA-TTTTTTGTATGCAGATTGCCTATTTCAGTATTATTAAGGTT
gi|20 : aTTTATGC----CCCCGCCAAAAAAT-T----AC--CGGGGGCAT-ATA---GT-GTTACCC
gi|3 : tCCGCCCCAA-GT-T----GT--C-GGGGCAT-ATACTAGT-TTTACCCTTGTC-CATAC----GT-----CTGTCCCTCTGCAACGAGCAGT--TT--------------GA--G---TTTT----CTAAAC----TCCTTGAGATATTGAACTGATTGTT------T------G-TTTGCTGGTGT--------ATATT-----AA-TAAG------T-TACAG-ATCAAGTTCGGTTTTCGTTTTGGTTCGCTAA---TTTTT--AA-TGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCCTT-TCA-CTTTGAAAAGTTACT-------GGTTTATGAACCAGTTTTTTTTTTCGGACTTTTT------TT-CTGAAGGCTTTGAGATATTGG-AACTGATTTTT-TTGTGGTATGCTGGTGTATATTAAACAGTCATTCCAGA
gi|4 : -T--------AT--------ATATTTAAAAAA-TGCG------TGTACAG-ATTAAATTTAGTTTTTGTCCCGTTTCAATGA---TTTTTGCATGTGAGTT-------------------------GTACCCCTTATAACCCTT---AAATTACT-------G--TTATG-TCCA-----G-TTTCCGGACTTTTTC-----TT----AACGCTTTG-TATATT-A-TAATGATTT-----------TACAGTTG--------------------GATCCGGT------TTCGCTTAAGTTCGTTA--TTTTGTT-GAGTTG-GCCCCTTAAAGTTTAACTTGGTTGAAGAATAACTTGTT-TGACCAG--TTTCCGGAC---TTT--TTT---CT-AAA
gi|5 : TTGTTGGAGTTGTACCCCTTTAACTTTGAAA-AA---CTGACCTTTTTGTATGGAGATTGCTTATTTCAGCATTCTTAATGTTTCACTAAGTGCTTCTAAAGATATTGAACTAATTC--TTTATATAGAAATCGTTGGA-TTTGAAAAATTACTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACTa
gi|6 : gTGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGCC-CGTCCT-----------------TCCAGAACGACCAGT--TGT----------CCGGT--CATTTTTTTTT-CTAAAT----GCAGTACGATATTGAACCGATTTTT------T------G-T--------ATGGAGGTATATATT-----AA-TGAA------T-TACAA-ATCAATGTCATCTTTCGTTTTCGTTCGTTGATTTTTTTT--AT-GGAGTT-------------------------GTGTCCCTT-TAA-CTTTAAtaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
gi|7 : gTATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTC-CG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGAC----CCCTTGAGAT----------TTTTG------TATGCAGG-T--------GT--------ATATT-----AACTAAGAAAAATT-TACCGCAACAAGTTcactgaaactaagg
gi|7 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CCCTTGAGAT------------TT-TTGTATGCAGGTGTATATT----AACTAA----GAAAAATTT-----ACCGCAACA-AGTTT----TCT-GGCCTT---TC--TTTTTT--TTT--TTTTTTttctggcctttctttttttttttttttttt
gi|8 : tatgccccgccaaaatgtgagccggcggggcattttacccttgtccgcc-----AA-TGAG------T-TACAA-ATCAAGTTTGAGTTTCGATTTGGTTCGTTGA---TTTTG--AT-GGAGTT-------------------------ATGCCCCTT-TAA-CTTTGAAAAATTAATGTTTACAG--TTATG-ACCA-----GTTTTCCGAACTTTTT------TT-CTGAATGCTTTAAGATATT-G-AACCAATTTTT-T----GTATGCAGGTGTATATttt
gi|9 : TATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTC-CG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGAC----CCCTTGAGATTTTtg
gi|9 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CC-CT-------TGA---GATTTT-TTGTATGCAGGTGTATATA----AC-TAA----GAAAAT-TT-----ACCGCAACA-AGTTTttgtatgcaggtgtatataactaagaaaatttaccgcaacaagtttctggccttttcttttttttt
Alignments
lowQualScore : 1 1111 1111 77777777777777777777 222222222222222222222 4444444444444444444444444444444444 11111 11 6666666666666666666666666 11 2222222 222222 22222 44444 222222 77777777777777777777 1 1 333333 111 11 111 222 111111 1111 33333333333 11111 1 1111 11111 111 111 1 11111 3333 555555555555555 2222
lowQualScore : 5 1 0 2222 4 1 3 5555 55 3 66 666 3 44444444444444444444 0 55 000000000000000000000 4 9999 2 0 5555555555555555555555555555555555 44444 6 0 22 0 1 99 3 6 44 6666666666666666666666666 6 44 11 6666666 8 111111 0 00000 3 77777 5 3 6 6 777777 1 777 55555555555555555555 0 4 2 6 7 888888 777 44 1 6 9 000 77 000 5 6 6 888888 5 6 0000 5 0 00000000000 22222 2 0 5 0 3333 33333 000 33 2 0 5 5 0 444 5 2 0 7 0 44444 1 6666 555555555555555 1 4444 22 1 1
lowQualScore : . . . .... . . . .... .. . .. ... . .................... . .. ..................... . .... . . .................................. ..... . . .. . . .. . . .. ......................... . .. .. ....... . ...... . ..... . ..... . . . . ...... . ... .................... . . . . . ...... ... .. . . . ... .. ... . . . ...... . . .... . . ........... ..... . . . . .... ..... ... .. . . . . . ... . . . . . ..... . .... ............... . .... .. . .
lowQualScore : 5 0 8 1111 5 5 6 5555 00 6 33 444 6 44444444444444444444 7 55 111111111111111111111 0 4444 0 7 3333333333333333333333333333333333 33333 7 7 00 7 0 22 2 7 22 7777777777777777777777777 7 88 00 0000000 0 000000 8 00000 7 88888 2 5 7 7 555555 0 000 33333333333333333333 7 0 0 7 3 333333 555 00 5 7 3 000 99 000 7 7 7 555555 7 7 6666 0 2 66666666666 55555 8 0 0 4 0000 77777 000 44 2 7 7 7 8 000 0 5 8 2 8 88888 0 0000 555555555555555 0 0000 00 0 0
consensus : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGT-C-TT--------CCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T------G-T--------GT--------ATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCTT---GAANGCTTTGAGATATT-G-AACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTTA---CAGATC-GG--T---TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
Reference ( family-305 ) : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGT-CTTT-------TCCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T------G-T--------GT--------ATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATN-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCTTANNGAACGCTTTGAGATATT-G-AACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTTA---CAGATCGAGT-T---TTTCGTTTCGGTTCGTTNATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTTTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
gi|1 : TTCAA-GTATAATTTTTATGT----CCTCGCCACTAAAT-G----GT--C-GGAACGT-ATA---GT-TTTACCATTGTCCGT-CCTTCTGTTCTTCCGTCCTTCCGCGTTGAGCA-T--TTT----------CCAGA--C---TTTTTTC-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T------G-T--------GT--------ATGTT-----AATGCGT-TACTCATCGAGTGCGCGTTTTGTTCCGGTTCATTGA--TTTTGG-ATT-GAGTC-------------------------GTGCCTCAT-TAACTTTGAAAAATTACTG--TT-------GCG-ACGA-----CTTTTCCATACT-----TTTT-TTAAAAAACGCTTTGTGATATT-G-AGTTGATTTTTAT----GTATGTAGTCGTATTTGAATGAGTTA---CAGATCGAGTATGAGTTTCGTGCCGGTTTGTTCATTTTTGTTGGAGTTGTGCCCC------ATTAACT---TTGAAAAATTAC-TGTCACGACCAG-TTTTTCAGAT---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TAGAAAGCAGGTTTATATT----AA-TGA----G------TT-----ACTG-ATCG-AGTTTGAG-TGT-G---TT---TCGGTTCGTTGATTTT-TCTA-TGGAGTTGTGCCACTTTAACTTTG-AAAA---CTGACCTTTTTGTATGCAGATTGCTGATTTCAGTATTTTTGATATTTCACTAAATTGTTTTA-----ATTGAATTTA--CCCTTT---------------GATTTGAAAAATTACTGTTTTCAATTTTCTGGGTATCACTTAT----CCTGGTTATTTCCTACCTTGGACT
gi|10 : ACT---TTAAAAAAATAT-TGCTATGACCAG-TTTTCCGGACATATTT--TTT---CT-AAACGCT-TTAAGATATTGAGCTGGTTTTCTTATATGCAGGTGTATATT----AA-TGA----G------TT-----ACGG-ATCA-AGATCGAGTTTT-G---TT---TGAGTTTGTTGATT
gi|11 : TTCAATGTATAATATC-ATGCATATTTATGCCAAAAAAT-G-----C--C-GAGGCAT-ATA---GT-TTTACTCTTGTCCGT-C----------------CTTTCGCAACCAACATT--TTC----------CCGGA--C---TTTTTTT-CTATACTGATGCTTTGAGATAT
gi|12 : AGGT-G----GTTGC-GGGGCATTATA---GTCTTTACTCTTGTCT----TTT-------GCTGTTCTTTC-TGACGAGCAGTATTTT----------CCAGA--C---TTGTTTT-CTAAATT----CC-TGAGATATTGAAGTGA---TT------T------G-T--------GT--------aatgat
gi|13 : TATGTAGGTGTATATT----AA-TGACCTAG------TT-----A----ATCA-AGTTTT-T-TTT-G---TTAAATT--TTCATTGATTTT-TTTC-AGGAGTTGTGCCCCTTTTAGCTTAAAAAA---
gi|14 : CAAAGT-G----GT--T-GGGGCAT-ATA---GT-TTTACTCTTGTC------TT-------GCTGTTCTTCTGTAACGAGCAGT--TTT----------CCAGA--C---TTGTTTT-CTAAATT----CCTTGAGATATTGAAGTGATatagatact
gi|15 : TGATTTT-TTGT-TGGATTTGTGCCCCTTTAACTTTGAAACA---CTAA-CTTTTTATATGCAGATTGCCTATTT------------TGTTTCACTTGATGCTTTTCAA
gi|16 : ---TTT--TTT---CT-CAAC-CC-CT------TTGAACTGATTTT-TAGAATGCAGGGATATATTTTCAAA-T-------------TT-----ACAG-ATCA-AG-CTGAGTTTT-G---TT---CTGG
gi|17 : tcatattTATGCAGGTGCATATT----AA-CGA----G------TTTATATACAG-ATAAGAGTTCAAG-TTTTG---TT---CCGGTTAGTCGATTTT-TTTT-TGGAGTTGTGCCCC
gi|18 : aATGC----CCCCGCCACAAAGTCG----GT----GGGATAT-GTA---GT-TTTACCCTT----------T-------TCCATCCTTTTGAGATGAGCAGT--TAT----------CTGAA------TATTTTT-CTAA
gi|19 : TTTCT----GAAGGCTTTGAGATATT-GGAACTGATTTTT-TTTG-GTATGCTGGTGTATATTAAt
gi|2 : CCACAAAGT-G----GT--C-GGAGCAT-GTA---GT-TTTACGCTTGTCCGT-CCTTCATTTCTTCTGTCCTTCCAAGATGAGCATT--TTTTTTTTCTTGACCAGA--C---TTTTTTTTCTAAACC----CCATAAGATATTGAACTGATTTTTGTATAAT------GAT--------AT--------ATATT-----AATGAGT-TACAGATTGAGTTTGAGTATTGTTCTGGTTCGATGA--TTTTTG-ATG-GAGTT-------------------------GTGTCCTTT-TAACGTTGCAAATTTACTG--TC-------GTG-ACCA-----ATTTTCCAGACTCCCCCCCCCCTTA---AAAGCTTTGAGATATT-G-AGCTCA-TTTT-T----GCATGCAGATGTATATTATTGAGTT----CAA--------T---TTTCGTTTCAGTTCGTTTATTTTCGATGGAGTTGTGTCCC------TTTAACT---TTGAAAAATTGC-TGTTATGACGAGTTTTTCCGAAC---TTTAATTT---GTCAAAC-GC-TTTAGGTATTGAACTAAGTTT-TTGTATACAGGTGTATATT----AA-TGA----G------TT-----ACAG-ATCG-AGTTTGAG-TTTCA---TT---TTGGTTTGATTATTTTGTTTTATGGAGTTGTGTCCCTTTGACTTTGAAAAAACCCTGA-TTTTTTGTATGCAGATTGCCTATTTCAGTATTATTAAGGTT
gi|20 : aTTTATGC----CCCCGCCAAAAAAT-T----AC--CGGGGGCAT-ATA---GT-GTTACCC
gi|3 : tCCGCCCCAA-GT-T----GT--C-GGGGCAT-ATACTAGT-TTTACCCTTGTCCATACGT---------CTGTCCCTCTGCAACGAGCAGT--TT--------------GA--G---TTTT----CTAAACT----CCTTGAGATATTGAACTGATTGTT------T------G-TTTGCTGGTGT--------ATATT-----AATAAGT-TACAGATCAAGTTCGGTTTTCGTTTTGGTTCGCTAA--TTTTTA-AT--GAGTTNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCCTT-TCACTTTGAAAAGTTACTGGTTT-------ATGAACCAGTTTTTTTTTTCGGACT-----TTTTTT--CTGAAGGCTTTGAGATATTGG-AACTGATTTTT-TTGTGGTATGCTGGTGTATATTAAACAGTCATTCCAGA
gi|4 : -T--------AT--------ATATTTAAAAAATGCGTGTACAGATTAAATTTAGTTTTTGTCCCGTTTCAATGA--TTTTTGCATGTGAGTT-------------------------GTACCCCTTATAACCCTTAAA--TTACTG--TT-------ATG-TCCA-----GTTT-CCGGACT-----TTTTCTT----AACGCTTTG-TATATT-A-TAATGATTT-----------TACAGTTG--------------------GATCCGG------TTTCGCTTAAGTTCGTT-ATTTT-GTT-GAGTTG-GCCCCTTAAAGTTTAACTTGGTTGAAGAATAACTTGTT-TGACCAG--TTTCCGGAC---TTT--TTT---CT-AAA
gi|5 : -TTGT-TGGAGTTGTACCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGGAGATTGCTTATTTCAGCATTCTTAATGTTTCACTAAGTGCTTCTAAAGATATTGAACTAATT--CTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACTa
gi|6 : gTGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGCCCGT-C----------------CTTCCAGAACGACCAGT--TGT----------CCGGT--CATTTTTTTTT-CTAAATG----CAGTACGATATTGAACCGATTTTT------T------G-T--------ATGGAGGTATATATT-----AATGAAT-TACAAATCAATGTCATCTTTCGTTTTCGTTCGTTGATTTTTTTT-ATG-GAGTT-------------------------GTGTCCCTT-TAACTTTAAtaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
gi|7 : gTATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCCG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGAGAT----------TTTTG------TATGCAGG-T--------GT--------ATATT-----AAcactgaaactaagg
gi|7 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CCCTTGAGAT------------TT-TTGTATGCAGGTGTATATT----AACTAA----GAAAAATTT-----ACCGCAACA-AGTTT----TCT-GGCCTT---TCTTTTTTTT--TTTT-TTTT-Tctaagaaaaatttaccgcaacaagttttctggcctttctttttttttttttttttt
gi|8 : tatgccccgccaaaatgtgagccggcggggcattttacccttgtccgcc-----AATGAGT-TACAAATCAAGTTTGAGTTTCGATTTGGTTCGTTGA--TTTT-G-ATG-GAGTT-------------------------ATGCCCCTT-TAACTTTGAAAAATTAATG--TTTACAGTTATG-ACCA-----GTTTTCCGAACT-----TTTTTT--CTGAATGCTTTAAGATATT-G-AACCAATTTTT-T----GTATGCAGGTGTATATTt
gi|9 : TATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCCG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGAGATTTTg
gi|9 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CC-CT-------TGA---GATTTT-TTGTATGCAGGTGTATATA----AC-TAA----GAAAAT-TT-----ACCGCAACA-AGTTTttgtatgcaggtgtatataactaagaaaatttaccgcaacaagtttctggccttttcttttttttt
Alignments
lowQualScore : 1 1111 1111 666666666666666 222222222222222222222 66666666666666666666666666 11111 6666666666666666666666666 11 2222222 222222 22222 111 1111 1 222222 55555555555555555555 1 1 333333 111 11 111 222 111111 1111 33333333333 11111 1 1111 11111 111 111 11111 3333 555555555555555 2222
lowQualScore : 5 1 0 2222 4 1 3 5555 55 3 66 666 3 444444444444444 5 0 55 000000000000000000000 4 9999 2 0 00000000000000000000000000 44444 6 0 22 0 1 99 3 6 99 6666666666666666666666666 6 44 11 6666666 8 111111 0 00000 3 666 2222 3 3 777777 1 777 77777777777777777777 0 2 2 6 7 888888 777 44 1 6 9 000 77 000 5 6 6 888888 5 6 0000 5 0 00000000000 22222 2 0 5 0 3333 33333 000 33 2 0 5 5 0 444 99 2 0 4 0 44444 1 6666 555555555555555 1 4444 22 1 1
lowQualScore : . . . .... . . . .... .. . .. ... . ............... . . .. ..................... . .... . . .......................... ..... . . .. . . .. . . .. ......................... . .. .. ....... . ...... . ..... . ... .... . . ...... . ... .................... . . . . . ...... ... .. . . . ... .. ... . . . ...... . . .... . . ........... ..... . . . . .... ..... ... .. . . . . . ... .. . . . . ..... . .... ............... . .... .. . .
lowQualScore : 5 0 8 1111 5 5 6 5555 00 6 33 444 6 777777777777777 7 7 55 111111111111111111111 0 4444 0 7 99999999999999999999999999 33333 7 7 00 7 0 22 2 7 22 7777777777777777777777777 7 88 00 0000000 0 000000 8 00000 7 222 7777 5 3 555555 0 000 99999999999999999999 7 0 0 7 3 333333 555 00 5 7 3 000 99 000 7 7 7 555555 7 7 6666 0 2 66666666666 55555 8 0 0 4 0000 77777 000 44 2 7 7 7 8 000 00 5 8 5 8 88888 0 0000 555555555555555 0 0000 00 0 0
consensus : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGT-C---------TTCCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T--------G-T--------GTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCT-TGAAN---GCTTTGAGATATT-GAACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTCA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
Reference ( family-305 ) : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGT-C---------TTCCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T--------G-T--------GTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCT-TGAAN---GCTTTGAGATATT-GAACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTTA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
gi|1 : TTCAA-GTATAATTTTTATGT----CCTCGCCACTAAAT-G----GT--C-GGAACGT-ATA---GT-TTTACCATTGTCCGT-CCTTCTGTTCTTCCGTCCTTCCGCGTTGAGCA-T--TTT----------CCAGA--C---TTTTTTC-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T--------G-T--------GTATGTT-----AATGCGT-TACTCATCGAGTGCGCGTTTTGTTCCGGTTCATTGA--TTTTGG-ATT-GAGTC-------------------------GTGCCTCAT-TAACTTTGAAAAATTACTG--TT-------GCG-ACGA-----CTTTTCCATACT-----TTTT-T-TAAAAAACGCTTTGTGATATT-GAGTTGATTTTTAT----GTATGTAGTCGTATTTGAATGAGTTA---CAGATCGAGTATGAGTTTCGTGCCGGTTTGTTCATTTTTGTTGGAGTTGTGCCCC------ATTAACT---TTGAAAAATTAC-TGTCACGACCAG-TTTTTCAGAT---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TAGAAAGCAGGTTTATATT----AA-TGA----G------TT-----ACTG-ATCG-AGTTTGAG-TGT-G---TT---TCGGTTCGTTGATTTT-TCTA-TGGAGTTGTGCCACTTTAACTTTG-AAAA---CTGACCTTTTTGTATGCAGATTGCTGATTTCAGTATTTTTGATATTTCACTAAATTGTTTTA-----ATTGAATTTA--CCCTTT---------------GATTTGAAAAATTACTGTTTTCAATTTTCTGGGTATCACTTAT----CCTGGTTATTTCCTACCTTGGACT
gi|10 : ACT---TTAAAAAAATAT-TGCTATGACCAG-TTTTCCGGACATATTT--TTT---CT-AAACGCT-TTAAGATATTGAGCTGGTTTTCTTATATGCAGGTGTATATT----AA-TGA----G------TT-----ACGG-ATCA-AGATCGAGTTTT-G---TT---TGAGTTTGTTGATT
gi|11 : TTCAATGTATAATATC-ATGCATATTTATGCCAAAAAAT-G-----C--C-GAGGCAT-ATA---GT-TTTACTCTTGTCCGT-C----------------CTTTCGCAACCAACATT--TTC----------CCGGA--C---TTTTTTT-CTATACTGATGCTTTGAGATAT
gi|12 : AGGT-G----GTTGC-GGGGCATTATA---GTCTTTACTCTTGTCT-T-T---------TGCTGTTCTTTC-TGACGAGCAGTATTTT----------CCAGA--C---TTGTTTT-CTAAATT----CC-TGAGATATTGAAGTGA---TT------T--------G-T--------GTaatgat
gi|13 : TATGTAGGTGTATATT----AA-TGACCTAG------TT-----A----ATCA-AGTTTT-T-TTT-G---TTAAATT--TTCATTGATTTT-TTTC-AGGAGTTGTGCCCCTTTTAGCTTAAAAAA---
gi|14 : CAAAGT-G----GT--T-GGGGCAT-ATA---GT-TTTACTCTTGTCT-------------TGCTGTTCTTCTGTAACGAGCAGT--TTT----------CCAGA--C---TTGTTTT-CTAAATT----CCTTGAGATATTGAAGTGATatagatact
gi|15 : TGATTTT-TTGT-TGGATTTGTGCCCCTTTAACTTTGAAACA---CTAAC-TTTTTATATGCAGATTGCCTATTT------------TGTTTCACTTGATGCTTTTCAA
gi|16 : ---TTT--TTT---CT-CAAC-CC-CT------TTGAACTGATTTT-TAGAATGCAGGGATATATTTTCAAA-T-------------TT-----ACAG-ATCA-AG-CTGAGTTTT-G---TT---CTGG
gi|17 : tcatattTATGCAGGTGCATATT----AA-CGA----G------TTTATATACAG-ATAAGAGTTCAAG-TTTTG---TT---CCGGTTAGTCGATTTT-TTTT-TGGAGTTGTGCCCC
gi|18 : aATGC----CCCCGCCACAAAGTCG----GT----GGGATAT-GTA---GT-TTTACCCTT-----------------TTCCATCCTTTTGAGATGAGCAGT--TAT----------CTGAA------TATTTTT-CTAA
gi|19 : TTTCT--GAAG---GCTTTGAGATATTGGAACTGATTTTT-TTTG-GTATGCTGGTGTATATTAAt
gi|2 : CCACAAAGT-G----GT--C-GGAGCAT-GTA---GT-TTTACGCTTGTCCGT-CCTTCATTTCTTCTGTCCTTCCAAGATGAGCATT--TTTTTTTTCTTGACCAGA--C---TTTTTTTTCTAAACC----CCATAAGATATTGAACTGATTTTTGTATAAT--------GAT--------ATATATT-----AATGAGT-TACAGATTGAGTTTGAGTATTGTTCTGGTTCGATGA--TTTTTG-ATG-GAGTT-------------------------GTGTCCTTT-TAACGTTGCAAATTTACTG--TC-------GTG-ACCA-----ATTTTCCAGACTCCCCCCCCCCT-TAAAA---GCTTTGAGATATT-GAGCTCA-TTTT-T----GCATGCAGATGTATATTATTGAGT---------TCA-AT-----TTTCGTTTCAGTTCGTTTATTTTCGATGGAGTTGTGTCCC------TTTAACT---TTGAAAAATTGC-TGTTATGACGAGTTTTTCCGAAC---TTTAATTT---GTCAAAC-GC-TTTAGGTATTGAACTAAGTTT-TTGTATACAGGTGTATATT----AA-TGA----G------TT-----ACAG-ATCG-AGTTTGAG-TTTCA---TT---TTGGTTTGATTATTTTGTTTTATGGAGTTGTGTCCCTTTGACTTTGAAAAAACCCTGA-TTTTTTGTATGCAGATTGCCTATTTCAGTATTATTAAGGTT
gi|20 : aTTTATGC----CCCCGCCAAAAAAT-T----AC--CGGGGGCAT-ATA---GT-GTTACCC
gi|3 : tCCGCCCCAA-GT-T----GT--C-GGGGCAT-ATACTAGT-TTTACCCTTGTCCATAC---------GTCTGTCCCTCTGCAACGAGCAGT--TT--------------GA--G---TTTT----CTAAACT----CCTTGAGATATTGAACTGATTGTT------T--------G-TTTGCTGGTGTATATT-----AATAAGT-TACAGATCAAGTTCGGTTTTCGTTTTGGTTCGCTAA--TTTTTA-AT--GAGTTNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCCTT-TCACTTTGAAAAGTTACTGGTTT-------ATGAACCAGTTTTTTTTTTCGGACT-----TTTTTTCTGAAG---GCTTTGAGATATTGGAACTGATTTTT-TTGTGGTATGCTGGTGTATATTAAACAGTCATTCCAGA
gi|4 : -T--------ATATATTTAAAAAATGCGTGTACAGATTAAATTTAGTTTTTGTCCCGTTTCAATGA--TTTTTGCATGTGAGTT-------------------------GTACCCCTTATAACCCTTAAA--TTACTG--TT-------ATG-TCCA-----GTTT-CCGGACT-----TTTTCT-T-AAC---GCTTTG-TATATT-ATAATGATTT-----------TACAGTTG--------------------GATCC-GG-----TTTCGCTTAAGTTCGTT-ATTTT-GTT-GAGTTG-GCCCCTTAAAGTTTAACTTGGTTGAAGAATAACTTGTT-TGACCAG--TTTCCGGAC---TTT--TTT---CT-AAA
gi|5 : -TTGT-TGGAGTTGTACCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGGAGATTGCTTATTTCAGCATTCTTAATGTTTCACTAAGTGCTTCTAAAGATATTGAACTAATT--CTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACTa
gi|6 : gTGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTG-----------------CCCGTCCTTCCAGAACGACCAGT--TGT----------CCGGT--CATTTTTTTTT-CTAAATG----CAGTACGATATTGAACCGATTTTT------TGTATGGAGG-T--------ATATATT-----AATGAAT-TACAAATCAATGTCATCTTTCGTTTTCGTTCGTTGATTTTTTTT-ATG-GAGTT-------------------------GTGTCCCTT-TAACTTTAAtaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
gi|7 : gTATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCCG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGAGAT----------TTTTG------TATGCAG--G-T--------GTATATT-----AAcactgaaactaagg
gi|7 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CCCTTGAGAT------------TT-TTGTATGCAGGTGTATATT----AACTAA----GAAAAATTT-----ACCGCAACA-AGTTT----TCT-GGCCTT---TCTTTTTTTT--TTTT-TTTT-Tctaagaaaaatttaccgcaacaagttttctggcctttctttttttttttttttttt
gi|8 : tatgccccgccaaaatgtgagccggcggggcattttacccttgtccgcc-----AATGAGT-TACAAATCAAGTTTGAGTTTCGATTTGGTTCGTTGA--TTTT-G-ATG-GAGTT-------------------------ATGCCCCTT-TAACTTTGAAAAATTAATG--TTTACAGTTATG-ACCA-----GTTTTCCGAACT-----TTTTTTCTGAAT---GCTTTAAGATATT-GAACCAATTTTT-T----GTATGCAGGTGTATATTt
gi|9 : TATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCCG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGAGATTTTg
gi|9 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CC-CT-------TGA---GATTTT-TTGTATGCAGGTGTATATA----AC-TAA----GAAAAT-TT-----ACCGCAACA-AGTTTttgtatgcaggtgtatataactaagaaaatttaccgcaacaagtttctggccttttcttttttttt
Alignments
lowQualScore : 1 1111 1111 666666666666666 222222222222222222222 66666666666666666666666666 11111 6666666666666666666666666 11 2222222 222222 22222 111 1111 1 222222 55555555555555555555 1 1 333333 111 11 111 222 111111 1111 33333333333 11111 1 1111 11111 111 111 11111 3333 555555555555555 2222
lowQualScore : 5 1 0 2222 4 1 3 5555 55 3 66 666 3 444444444444444 5 0 55 000000000000000000000 4 9999 2 0 00000000000000000000000000 44444 6 0 22 0 1 99 3 6 99 6666666666666666666666666 6 44 11 6666666 8 111111 0 00000 3 666 2222 3 3 777777 1 777 77777777777777777777 0 2 2 6 7 888888 777 44 1 6 9 000 77 000 5 6 6 888888 5 6 0000 5 0 00000000000 22222 2 0 5 0 3333 33333 000 33 2 0 5 5 0 444 99 2 0 4 0 44444 1 6666 555555555555555 1 4444 22 1 1
lowQualScore : . . . .... . . . .... .. . .. ... . ............... . . .. ..................... . .... . . .......................... ..... . . .. . . .. . . .. ......................... . .. .. ....... . ...... . ..... . ... .... . . ...... . ... .................... . . . . . ...... ... .. . . . ... .. ... . . . ...... . . .... . . ........... ..... . . . . .... ..... ... .. . . . . . ... .. . . . . ..... . .... ............... . .... .. . .
lowQualScore : 5 0 8 1111 5 5 6 5555 00 6 33 444 6 777777777777777 7 7 55 111111111111111111111 0 4444 0 7 99999999999999999999999999 33333 7 7 00 7 0 22 2 7 22 7777777777777777777777777 7 88 00 0000000 0 000000 8 00000 7 222 7777 5 3 555555 0 000 77777777777777777777 7 0 0 7 3 333333 555 00 5 7 3 000 99 000 7 7 7 555555 7 7 6666 0 2 66666666666 55555 8 0 0 4 0000 77777 000 44 2 7 7 7 8 000 00 5 8 5 8 88888 0 0000 555555555555555 0 0000 00 0 0
consensus : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGT-C---------TTCCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T--------G-T--------GTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCT-TGAAN---GCTTTGAGATATT-GAACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTCA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
Reference ( family-305 ) : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGT-C---------TTCCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T--------G-T--------GTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCT-TGAAN---GCTTTGAGATATT-GAACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTCA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
gi|1 : TTCAA-GTATAATTTTTATGT----CCTCGCCACTAAAT-G----GT--C-GGAACGT-ATA---GT-TTTACCATTGTCCGT-CCTTCTGTTCTTCCGTCCTTCCGCGTTGAGCA-T--TTT----------CCAGA--C---TTTTTTC-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T--------G-T--------GTATGTT-----AATGCGT-TACTCATCGAGTGCGCGTTTTGTTCCGGTTCATTGA--TTTTGG-ATT-GAGTC-------------------------GTGCCTCAT-TAACTTTGAAAAATTACTG--TT-------GCG-ACGA-----CTTTTCCATACT-----TTTT-T-TAAAAAACGCTTTGTGATATT-GAGTTGATTTTTAT----GTATGTAGTCGTATTTGAATGAGTTA---CAGATCGAGTATGAGTTTCGTGCCGGTTTGTTCATTTTTGTTGGAGTTGTGCCCC------ATTAACT---TTGAAAAATTAC-TGTCACGACCAG-TTTTTCAGAT---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TAGAAAGCAGGTTTATATT----AA-TGA----G------TT-----ACTG-ATCG-AGTTTGAG-TGT-G---TT---TCGGTTCGTTGATTTT-TCTA-TGGAGTTGTGCCACTTTAACTTTG-AAAA---CTGACCTTTTTGTATGCAGATTGCTGATTTCAGTATTTTTGATATTTCACTAAATTGTTTTA-----ATTGAATTTA--CCCTTT---------------GATTTGAAAAATTACTGTTTTCAATTTTCTGGGTATCACTTAT----CCTGGTTATTTCCTACCTTGGACT
gi|10 : ACT---TTAAAAAAATAT-TGCTATGACCAG-TTTTCCGGACATATTT--TTT---CT-AAACGCT-TTAAGATATTGAGCTGGTTTTCTTATATGCAGGTGTATATT----AA-TGA----G------TT-----ACGG-ATCA-AGATCGAGTTTT-G---TT---TGAGTTTGTTGATT
gi|11 : TTCAATGTATAATATC-ATGCATATTTATGCCAAAAAAT-G-----C--C-GAGGCAT-ATA---GT-TTTACTCTTGTCCGT-C----------------CTTTCGCAACCAACATT--TTC----------CCGGA--C---TTTTTTT-CTATACTGATGCTTTGAGATAT
gi|12 : AGGT-G----GTTGC-GGGGCATTATA---GTCTTTACTCTTGTCT-T-T---------TGCTGTTCTTTC-TGACGAGCAGTATTTT----------CCAGA--C---TTGTTTT-CTAAATT----CC-TGAGATATTGAAGTGA---TT------T--------G-T--------GTaatgat
gi|13 : TATGTAGGTGTATATT----AA-TGACCTAG------TT-----A----ATCA-AGTTTT-T-TTT-G---TTAAATT--TTCATTGATTTT-TTTC-AGGAGTTGTGCCCCTTTTAGCTTAAAAAA---
gi|14 : CAAAGT-G----GT--T-GGGGCAT-ATA---GT-TTTACTCTTGTCT-------------TGCTGTTCTTCTGTAACGAGCAGT--TTT----------CCAGA--C---TTGTTTT-CTAAATT----CCTTGAGATATTGAAGTGATatagatact
gi|15 : TGATTTT-TTGT-TGGATTTGTGCCCCTTTAACTTTGAAACA---CTAAC-TTTTTATATGCAGATTGCCTATTT------------TGTTTCACTTGATGCTTTTCAA
gi|16 : ---TTT--TTT---CT-CAAC-CC-CT------TTGAACTGATTTT-TAGAATGCAGGGATATATTTTCAAA-T-------------TT-----ACAG-ATCA-AG-CTGAGTTTT-G---TT---CTGG
gi|17 : tcatattTATGCAGGTGCATATT----AA-CGA----G------TTTATATACAG-ATAAGAGTTCAAG-TTTTG---TT---CCGGTTAGTCGATTTT-TTTT-TGGAGTTGTGCCCC
gi|18 : aATGC----CCCCGCCACAAAGTCG----GT----GGGATAT-GTA---GT-TTTACCCTT-----------------TTCCATCCTTTTGAGATGAGCAGT--TAT----------CTGAA------TATTTTT-CTAA
gi|19 : TTTCT--GAAG---GCTTTGAGATATTGGAACTGATTTTT-TTTG-GTATGCTGGTGTATATTAAt
gi|2 : CCACAAAGT-G----GT--C-GGAGCAT-GTA---GT-TTTACGCTTGTCCGT-CCTTCATTTCTTCTGTCCTTCCAAGATGAGCATT--TTTTTTTTCTTGACCAGA--C---TTTTTTTTCTAAACC----CCATAAGATATTGAACTGATTTTTGTATAAT--------GAT--------ATATATT-----AATGAGT-TACAGATTGAGTTTGAGTATTGTTCTGGTTCGATGA--TTTTTG-ATG-GAGTT-------------------------GTGTCCTTT-TAACGTTGCAAATTTACTG--TC-------GTG-ACCA-----ATTTTCCAGACTCCCCCCCCCCT-TAAAA---GCTTTGAGATATT-GAGCTCA-TTTT-T----GCATGCAGATGTATATTATTGAGT---------TCA-AT-----TTTCGTTTCAGTTCGTTTATTTTCGATGGAGTTGTGTCCC------TTTAACT---TTGAAAAATTGC-TGTTATGACGAGTTTTTCCGAAC---TTTAATTT---GTCAAAC-GC-TTTAGGTATTGAACTAAGTTT-TTGTATACAGGTGTATATT----AA-TGA----G------TT-----ACAG-ATCG-AGTTTGAG-TTTCA---TT---TTGGTTTGATTATTTTGTTTTATGGAGTTGTGTCCCTTTGACTTTGAAAAAACCCTGA-TTTTTTGTATGCAGATTGCCTATTTCAGTATTATTAAGGTT
gi|20 : aTTTATGC----CCCCGCCAAAAAAT-T----AC--CGGGGGCAT-ATA---GT-GTTACCC
gi|3 : tCCGCCCCAA-GT-T----GT--C-GGGGCAT-ATACTAGT-TTTACCCTTGTCCATAC---------GTCTGTCCCTCTGCAACGAGCAGT--TT--------------GA--G---TTTT----CTAAACT----CCTTGAGATATTGAACTGATTGTT------T--------G-TTTGCTGGTGTATATT-----AATAAGT-TACAGATCAAGTTCGGTTTTCGTTTTGGTTCGCTAA--TTTTTA-AT--GAGTTNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCCTT-TCACTTTGAAAAGTTACTGGTTT-------ATGAACCAGTTTTTTTTTTCGGACT-----TTTTTTCTGAAG---GCTTTGAGATATTGGAACTGATTTTT-TTGTGGTATGCTGGTGTATATTAAACAGTCATTCCAGA
gi|4 : -T--------ATATATTTAAAAAATGCGTGTACAGATTAAATTTAGTTTTTGTCCCGTTTCAATGA--TTTTTGCATGTGAGTT-------------------------GTACCCCTTATAACCCTTAAA--TTACTG--TT-------ATG-TCCA-----GTTT-CCGGACT-----TTTTCT-T-AAC---GCTTTG-TATATT-ATAATGATTT-----------TACAGTTG--------------------GATCC-GG-----TTTCGCTTAAGTTCGTT-ATTTT-GTT-GAGTTG-GCCCCTTAAAGTTTAACTTGGTTGAAGAATAACTTGTT-TGACCAG--TTTCCGGAC---TTT--TTT---CT-AAA
gi|5 : -TTGT-TGGAGTTGTACCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGGAGATTGCTTATTTCAGCATTCTTAATGTTTCACTAAGTGCTTCTAAAGATATTGAACTAATT--CTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACTa
gi|6 : gTGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTG-----------------CCCGTCCTTCCAGAACGACCAGT--TGT----------CCGGT--CATTTTTTTTT-CTAAATG----CAGTACGATATTGAACCGATTTTT------TGTATGGAGG-T--------ATATATT-----AATGAAT-TACAAATCAATGTCATCTTTCGTTTTCGTTCGTTGATTTTTTTT-ATG-GAGTT-------------------------GTGTCCCTT-TAACTTTAAtaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
gi|7 : gTATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCCG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGAGAT----------TTTTG------TATGCAG--G-T--------GTATATT-----AAcactgaaactaagg
gi|7 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CCCTTGAGAT------------TT-TTGTATGCAGGTGTATATT----AACTAA----GAAAAATTT-----ACCGCAACA-AGTTT----TCT-GGCCTT---TCTTTTTTTT--TTTT-TTTT-Tctaagaaaaatttaccgcaacaagttttctggcctttctttttttttttttttttt
gi|8 : tatgccccgccaaaatgtgagccggcggggcattttacccttgtccgcc-----AATGAGT-TACAAATCAAGTTTGAGTTTCGATTTGGTTCGTTGA--TTTT-G-ATG-GAGTT-------------------------ATGCCCCTT-TAACTTTGAAAAATTAATG--TTTACAGTTATG-ACCA-----GTTTTCCGAACT-----TTTTTTCTGAAT---GCTTTAAGATATT-GAACCAATTTTT-T----GTATGCAGGTGTATATTt
gi|9 : TATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCCG--------------CCAT---TACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGAGATTTTg
gi|9 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CC-CT-------TGA---GATTTT-TTGTATGCAGGTGTATATA----AC-TAA----GAAAAT-TT-----ACCGCAACA-AGTTTttgtatgcaggtgtatataactaagaaaatttaccgcaacaagtttctggccttttcttttttttt
blockSeqs : T A ATAT T A C AGCC TG G TA CTA C GTCCTTCATTTCTT T AT TTTTTCTTGACCAGAC T GATG T TGTTTGCTGGT TAAAA G AG A TT T C GT NNNNNNNNNNNNNNNNNNNNNNNNN A AT GT TACAGTT A GTTTTT CCCCC C CTG G A G TTGTG G TTG GATCCGG T C G T TTAAAG TGG TT T T G ATA AA TTT C G C AAGATA G C TTCA C GAAAAAT TATAT G C G GAGT GGCC AAA GA T G A ACC CC C A AAGAT A TT ATATAGAAATCGTTG T AAAC GG T A
blockSeqs : . C G . AGCC . . A . . ATACGT T . CCGGTCATT . . T TGTATGGAGGT . . GT C . T . G . . AG . . . A . C CTG A A G TTTG A AAC TCAAT . . . . . . T T . A . . TTT . . . TAGGTA A . . . GAAAAT . A C . GAGT TG . TG C . . . C C C
blockSeqs : . C A . . . . A . . TTTG C . CCAATTT . . A GTATAATGAT . . GT A . T . G . . AA . . . G . T TA G A . T G . . T T . G . . . . . . GAGAT A . . . CCTAG . A . . AAG CA . CG A . . . T . .
blockSeqs : . C A . . . . G . . GTC C . CCAATTT . . T TATGCAGGT . . TC T . T . G . . . . . . G . C G C A . T T . G . . . . . . . . . . . . . G . A . . GAG G . TG T . . .
blockSeqs : . C A . . . . G . . TG C . CCGGAC . . G TGT . . AG T . . . . . . T T T . . . G . G . . . . . . . . . . . . . G . C . . TT G . CT T . .
blockSeqs : . . A . . . . A . . TT C . CCAGAC . . T . . . . . . . G . C . . . G . T . .
blockSeqs : . A . . . . A . . C . . CCAGAC . . T . . . . . . .
blockSeqs : T . . . . A . . G . . CTGAA . . .
blockSeqs : T . . . . . . . G . . GAG .
blockSeqs : . . . . . . . .
blockSeqCons : TGT************ TGTATGCTGGT*************** CTG N*** TT**** T*
originalCons : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCGT-C---------TTCCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTT------T--------G-T--------GTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCT-TGAAN---GCTTTGAGATATT-GAACTGATTTTT-T----GTATGCAGGTGTATATTAATGAGTCA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
finalCons : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCCTGT------------CCGTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTTTGTATGCTGGT---------------GTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACT-----TTTTCTCTGAAN---GCTTTGAGATATT-GAACTGATTTTTTT----GTATGCAGGTGTATATTAATGAGTCA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTACT-GCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
Alignments
lowQualScore : 1 1111 1111 88888888888888888888888888888 222222222222222222222 11 11111 6666666666666666666666666 11 2222222 222222 11111 1 222 55555555555555555555 1 1 333333 111 11 111 222 111111 1111 33333333333 11111 1 1111 11111 111 111 11111 3333 555555555555555 2222
lowQualScore : 5 1 0 2222 4 1 3 5555 55 3 66 666 3 33333333333333333333333333333 0 55 000000000000000000000 4 9999 2 2 3 00 44444 6 0 22 0 1 99 3 6 99 6666666666666666666666666 6 44 11 6666666 8 111111 0 0 77777 77 3 3 7 000 1 777 77777777777777777777 0 2 2 6 7 888888 777 44 1 6 9 000 77 000 5 6 6 888888 5 6 0000 5 0 00000000000 22222 2 0 5 0 3333 33333 000 33 2 0 5 5 0 444 99 2 0 4 0 44444 1 6666 555555555555555 1 4444 22 1 1
lowQualScore : . . . .... . . . .... .. . .. ... . ............................. . .. ..................... . .... . . . .. ..... . . .. . . .. . . .. ......................... . .. .. ....... . ...... . . ..... .. . . . ... . ... .................... . . . . . ...... ... .. . . . ... .. ... . . . ...... . . .... . . ........... ..... . . . . .... ..... ... .. . . . . . ... .. . . . . ..... . .... ............... . .... .. . .
lowQualScore : 5 0 8 1111 5 5 6 5555 00 6 33 444 6 44444444444444444444444444444 7 55 111111111111111111111 0 4444 0 5 5 55 33333 7 7 00 7 0 22 2 7 22 7777777777777777777777777 7 88 00 0000000 0 000000 8 7 77777 77 5 3 3 888 0 000 77777777777777777777 7 0 0 7 3 333333 555 00 5 7 3 000 99 000 7 7 7 555555 7 7 6666 0 2 66666666666 55555 8 0 0 4 0000 77777 000 44 2 7 7 7 8 000 00 5 8 5 8 88888 0 0000 555555555555555 0 0000 00 0 0
consensus : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCC--------GT----CC------------GTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTTTGTATGCAGGTGTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACTTTTTTTC----TGAAN-GCTTTGAGATATT-GAACTGATTTTTTT---GTATGCAGGTGTATATTAATGAGTCA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
Reference ( family-305 ) : TTCAATGTATAATNTTTATGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGTCC-------TGT----CC------------GTCCTTCCGCGACGAGCAGT--TTT----------CCGGA--C---TTTTTTT-CTAAACC----CCTTGAGATATTGAACTGATTTTTTGTATGCTGGTGTATATT-----AATGAGT-TACAGATCGAGTTCGNNTTTCGTTCCGGTTCGNTGA--TTTTTG-ATG-GAGTT-------------------------GTGCCCCTT-TAACTTTGAAAAATTACTG--TT-------ATG-ACCA-----NTTTTCCGGACTTTTTCTC----TGAAN-GCTTTGAGATATT-GAACTGATTTTTTT---GTATGCAGGTGTATATTAATGAGTCA---CAGATCG-GT-----TTTCGTTTCGGTTCGTTCATTTTCGTTGGAGTTGTGCCCC------TTTAACT---TTGAAAAATTAC-TGCTACGACCAG-TTTTCCGGAC---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TTGTATGCAGGTGTATATT----AA-TGA----G------TT-----ACNG-ATCA-AGTTTGAG-TTT-G---TT---TCGGTTCGTTGATTTT-TTTT-TGGAGTTGTGCCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGCAGATTGCCTATTTCAGTATTNTTAATGTTTCACTAAATGCTTTTAAAGATATTGAACTNATTCCCTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCNATTTTCTGGGTATCACTCATAAACCCTGGNNATTTCCTNCNTTGGACT
gi|1 : TTCAA-GTATAATTTTTATGT----CCTCGCCACTAAAT-G----GT--C-GGAACGT-ATA---GT-TTTACCATTGTCCGTCCTTCTGTTCTTCC------------GTCCTTCCGCGTTGAGCA-T--TTT----------CCAGA--C---TTTTTTC-CTAAACC----CCTTGAGATATTGAACTGATTTTTTGT--------GTATGTT-----AATGCGT-TACTCATCGAGTGCGCGTTTTGTTCCGGTTCATTGA--TTTTGG-ATT-GAGTC-------------------------GTGCCTCAT-TAACTTTGAAAAATTACTG--TT-------GCG-ACGA-----CTTTTCCATACTTTTTTTA----AAAAACGCTTTGTGATATT-GAGTTGATTTTTAT---GTATGTAGTCGTATTTGAATGAGTTA---CAGATCGAGTATGAGTTTCGTGCCGGTTTGTTCATTTTTGTTGGAGTTGTGCCCC------ATTAACT---TTGAAAAATTAC-TGTCACGACCAG-TTTTTCAGAT---TTT--TTT---CT-AAAC-CC-TTGAGATATTGAACTGATTTT-TAGAAAGCAGGTTTATATT----AA-TGA----G------TT-----ACTG-ATCG-AGTTTGAG-TGT-G---TT---TCGGTTCGTTGATTTT-TCTA-TGGAGTTGTGCCACTTTAACTTTG-AAAA---CTGACCTTTTTGTATGCAGATTGCTGATTTCAGTATTTTTGATATTTCACTAAATTGTTTTA-----ATTGAATTTA--CCCTTT---------------GATTTGAAAAATTACTGTTTTCAATTTTCTGGGTATCACTTAT----CCTGGTTATTTCCTACCTTGGACT
gi|10 : ACT---TTAAAAAAATAT-TGCTATGACCAG-TTTTCCGGACATATTT--TTT---CT-AAACGCT-TTAAGATATTGAGCTGGTTTTCTTATATGCAGGTGTATATT----AA-TGA----G------TT-----ACGG-ATCA-AGATCGAGTTTT-G---TT---TGAGTTTGTTGATT
gi|11 : TTCAATGTATAATATC-ATGCATATTTATGCCAAAAAAT-G-----C--C-GAGGCAT-ATA---GT-TTTACTCTTGTC----------------C------------GTCCTTTCGCAACCAACATT--TTC----------CCGGA--C---TTTTTTT-CTATACTGATGCTTTGAGATAT
gi|12 : AGGT-G----GTTGC-GGGGCATTATA---GTCTTTACTCTTGTCT-------TTTG---CT------------GTTCTTTC-TGACGAGCAGTATTTT----------CCAGA--C---TTGTTTT-CTAAATT----CC-TGAGATATTGAAGTGATTTaatgat
gi|13 : TATGTAGGTGTATATT----AA-TGACCTAG------TT-----A----ATCA-AGTTTT-T-TTT-G---TTAAATT--TTCATTGATTTT-TTTC-AGGAGTTGTGCCCCTTTTAGCTTAAAAAA---gtgt
gi|14 : CAAAGT-G----GT--T-GGGGCAT-ATA---GT-TTTACTCTTGTCT-------TG-----CT------------GTTCTTCTGTAACGAGCAGT--TTT----------CCAGA--C---TTGTTTT-CTAAATT----CCTTGAGATATTGAAGTGATatagatact
gi|15 : TGATTTT-TTGT-TGGATTTGTGCCCCTTTAACTTTGAAACA---CTAAC-TTTTTATATGCAGATTGCCTATTT------------TGTTTCACTTGATGCTTTTCAA
gi|16 : ---TTT--TTT---CT-CAAC-CC-CT------TTGAACTGATTTT-TAGAATGCAGGGATATATTTTCAAA-T-------------TT-----ACAG-ATCA-AG-CTGAGTTTT-G---TT---CTGG
gi|17 : tcatattTATGCAGGTGCATATT----AA-CGA----G------TTTATATACAG-ATAAGAGTTCAAG-TTTTG---TT---CCGGTTAGTCGATTTT-TTTT-TGGAGTTGTGCCCC
gi|18 : aATGC----CCCCGCCACAAAGTCG----GT----GGGATAT-GTA---GT-TTTACCCTT-T-----------T----CC------------ATCCTTTTGAGATGAGCAGT--TAT----------CTGAA------TATTTTT-CTAA
gi|19 : TTTC----TGAAG-GCTTTGAGATATTGGAACTGATTTTTTTTG-GTATGCTGGTGTATATTAAt
gi|2 : CCACAAAGT-G----GT--C-GGAGCAT-GTA---GT-TTTACGCTTGTCC--------GT----CCTTCATTTCTTCTGTCCTTCCAAGATGAGCATT--TTTTTTTTCTTGACCAGA--C---TTTTTTTTCTAAACC----CCATAAGATATTGAACTGATTTTT-GTATAATGATATATATT-----AATGAGT-TACAGATTGAGTTTGAGTATTGTTCTGGTTCGATGA--TTTTTG-ATG-GAGTT-------------------------GTGTCCTTT-TAACGTTGCAAATTTACTG--TC-------GTG-ACCA-----ATTTTCCAGACTCCCCCCCCCCTTAAAA-GCTTTGAGATATT-GAGCTCA--TTTTT---GCATGCAGATGTATATTATTGAGT---------TCA-AT-----TTTCGTTTCAGTTCGTTTATTTTCGATGGAGTTGTGTCCC------TTTAACT---TTGAAAAATTGC-TGTTATGACGAGTTTTTCCGAAC---TTTAATTT---GTCAAAC-GC-TTTAGGTATTGAACTAAGTTT-TTGTATACAGGTGTATATT----AA-TGA----G------TT-----ACAG-ATCG-AGTTTGAG-TTTCA---TT---TTGGTTTGATTATTTTGTTTTATGGAGTTGTGTCCCTTTGACTTTGAAAAAACCCTGA-TTTTTTGTATGCAGATTGCCTATTTCAGTATTATTAAGGTT
gi|20 : aTTTATGC----CCCCGCCAAAAAAT-T----AC--CGGGGGCAT-ATA---GT-GTTACCC
gi|3 : tCCGCCCCAA-GT-T----GT--C-GGGGCAT-ATACTAGT-TTTACCCTTGTCCATA----CGT----CT------------GTCCCTCTGCAACGAGCAGT--TT--------------GA--G---TTTT----CTAAACT----CCTTGAGATATTGAACTGATTGTTTGTTTGCTGGTGTATATT-----AATAAGT-TACAGATCAAGTTCGGTTTTCGTTTTGGTTCGCTAA--TTTTTA-AT--GAGTTNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCCTT-TCACTTTGAAAAGTTACTGGTTT-------ATGAACCAGTTTTTTTTTTCGGACTTTTTTTC----TGAAG-GCTTTGAGATATTGGAACTGATTTTTTTGTGGTATGCTGGTGTATATTAAACAGTCATTCCAGA
gi|4 : TATATATTTAAAAAATGCGTGTACAGATTAAATTTAGTTTTTGTCCCGTTTCAATGA--TTTTTGCATGTGAGTT-------------------------GTACCCCTTATAACCCTTAAA--TTACTG--TT-------ATG-TCCA-----GTTT-CCGGACTTTTTCTT------AAC-GCTTTG-TATATT-ATAATGATTT----------TACAGTTG--------------------GATCC-GG-----TTTCGCTTAAGTTCGTT-ATTTT-GTT-GAGTTG-GCCCCTTAAAGTTTAACTTGGTTGAAGAATAACTTGTT-TGACCAG--TTTCCGGAC---TTT--TTT---CT-AAA
gi|5 : -TTGT-TGGAGTTGTACCCCTTTAACTTTGAAAAA---CTGACCTTTTTGTATGGAGATTGCTTATTTCAGCATTCTTAATGTTTCACTAAGTGCTTCTAAAGATATTGAACTAATT--CTTTATATAGAAATCGTTGGATTTGAAAAATTACTGCTTTCTATTTTCTGGGTATCACTCATAAACCTTGGGGATTTCCTTCATTGAACTa
gi|6 : gTGC----CCCCGCCACAAAGT-G----GT--C-GGGGCAT-ATA---GT-TTTACCCTTGCCC----------------------------GTCCTTCCAGAACGACCAGT--TGT----------CCGGT--CATTTTTTTTT-CTAAATG----CAGTACGATATTGAACCGATTTTTTGTATGGAGGTATATATT-----AATGAAT-TACAAATCAATGTCATCTTTCGTTTTCGTTCGTTGATTTTTTTT-ATG-GAGTT-------------------------GTGTCCCTT-TAACTTTAAtaactgcaggtgggggcattcgtgttgtgccgactcatctatatg
gi|7 : gTATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCC----------------------------GCCATTACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGAGA------------TTTTTGTATGCAGGTGTATATT-----AAcactgaaactaagg
gi|7 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CCCTTGAGAT------------TT-TTGTATGCAGGTGTATATT----AACTAA----GAAAAATTT-----ACCGCAACA-AGTTT----TCT-GGCCTT---TCTTTTTTTT--TTTT-TTTT-Tctaagaaaaatttaccgcaacaagttttctggcctttctttttttttttttttttt
gi|8 : tatgccccgccaaaatgtgagccggcggggcattttacccttgtccgcc-----AATGAGT-TACAAATCAAGTTTGAGTTTCGATTTGGTTCGTTGA--TTTT-G-ATG-GAGTT-------------------------ATGCCCCTT-TAACTTTGAAAAATTAATG--TTTACAGTTATG-ACCA-----GTTTTCCGAACTTTTTTTC----TGAAT-GCTTTAAGATATT-GAACCAA-TTTTTT---GTATGCAGGTGTATATTt
gi|9 : TATGC----CCC-GCCAAAATGT-GAGCCGG--C-GGGGCAT----------TTTACCCTTGTCC----------------------------GCCATTACGCGACGAGCAGT--TTT----------CC-AATTT---TTTTTTT-CTGGACC----CCTTGA-----------GATTTTTTGTATGCAGGTGTATATg
gi|9 : ATTAC--GCGACGAGCAG-TTTTCCA-AT---TTT--TTTTTTCT-GGAC-CC-CT-------TGA---GATTTT-TTGTATGCAGGTGTATATA----AC-TAA----GAAAAT-TT-----ACCGCAACA-AGTTTaactaagaaaatttaccgcaacaagtttctggccttttcttttttttt