lowQualScore : 1 88888888888888888888888888 33333333333 11 11 1111 22222222222222222 1 111 9999999999999999999999999999999999999999 111111111 22 1 1
lowQualScore : 6 5 6 99999999999999999999999999 22222222222 22 777 22 1 3 1 66 44 1 1 88 2222 2 33 444 66666666666666666 333 5555 1 333 2 2 33 33 2 2 2 66 2 55 2 2 555 1 0000000000000000000000000000000000000000 9 5 888 2 2 99999999 33 2 333 2 33 5 5555 444 999999999 2 77 4 6 5 7
lowQualScore : . . . .......................... ........... .. ... .. . . . .. .. . . .. .... . .. ... ................. ... .... . ... . . .. .. . . . .. . .. . . ... . ........................................ . . ... . . ........ .. . ... . .. . .... ... ......... . .. . . . .
lowQualScore : 0 0 0 33333333333333333333333333 99999999999 55 666 55 8 6 7 55 33 7 7 00 5555 5 44 444 77777777777777777 999 7777 4 111 7 7 99 99 9 9 9 88 9 88 9 9 000 9 3333333333333333333333333333333333333333 0 7 888 5 5 11111111 11 2 999 2 11 7 0000 444 222222222 5 55 0 0 0 0
consensus : TAGCCTGAATCAC-TAACGATGGGACTG-AGAAT-----CTAC----TT-----ATATACAG--TCGAACT--T--C-G-TTATC-TC--GA--A-C-T--GAT----GG-GAC--CGAG---AAA-AAGTTT-A-G-A----T--ATCC----GTGGATT-CGAGAT-AT-C--G--A-G-GG-TAAAAA--TAC-TN-A-G-AAAA---TAGGTGGT----C-T-----GGCT-GGGACC---TC-----CGA--ATCACTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TC-GA--GATACCGAAG----TTCGACTG---TACTGNCA-AT-TAAGNAAATATCTNTAATATACTTAC
Reference ( gi|1 ) : TAGCCTAACTTACATAGGGAT---ACTGCAGGAT-----CTAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GA--A-C-T--GAT----GG-GAC--CAAG---AAA-ATGTTTTA-G-A----T--ATCC----GTGAATT-CAAGAT-AT-C--G--A-G-GG-TAAAAA--TAC-TA-A-G-AAAA---TAGGTGGTAACAC-T-----GGTT-GGGACC---TC-----TAC--ATCAGTTCGA-CATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TC-GA--GATATCGAAG----TTCAACTG---TACTACCA-AT-CAAGCAA--ATCTTTGAGATTCTTACC
gi|17 : TAGCCTGAATCAC-TAACGATGGGACTG-AGAATAAAAACTACACAGCC-----ATGTACAG--TCGAACC--T--T-G-TTATC-TCA-GA--A-CTT--GAT----GG-GAC--CGAG---AAA-A
gi|10 : -----CTAC----TTTGCATATATACAG--TTGAACT--T--C-G-GTATC-TC--GAACA-C-T--GAT----a
gi|3 : atacaatcgaacattgttatctcgaacttgatgggacggagaaataaactttagagatatttgtgtatatcgagggtaaaaatactaagaaaataggtggcttggacttccgattcactttgacatagccatggtattcgagat-----CTAC----TTTGCATATATACAG--TTGAACT--T--C-G-GTATC-TC--GAACA-C-T--GAT----tttgcacaaattttta
gi|16 : ttatgaaaacttttaagatttacaaaattgacttttctattacaatcgaagcatttgtatctcgaacttgatgggacgagaaataaactttagagatatttgtgtatatcgaggtaaaaatactaaagaaaataggtggctggacttccgattcactttgacatagccatggtattcgagaTAT----TA-----ATATGCTG--TCGAACC--T--T---TTATC-TT--GA--A-C-T--CAA----TG-GAC--CAAGCAAAAA-ATGTT----G-A----T---TCC----GTG-ATC-CCAGATAAT-C--G--A---GG-TAACTA--TAC-TC-A-GAAAAA---TAAG------CA--T-----GGCT-GGGAtttgcacaaattt
gi|8 : tggaaT-----ATATACAG--TCAAACA--T--T-G-TTATC-TT--GA--A-C-TT-GAT----GG-GAC--TGAG---AAA-AAAATTCA---A----TTTATCC----ATGGATT-TAAGAT-AT-C--A--A-A-GG-TAAAAA--TAC-TA-A-G-AAAA---TAGGTGGC---------------T-GGAACC---TT-----TGA--ATCACTTTGA-TATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TT-GA--GATACCGAAG----TTCAACTG---TACT
gi|9 : aattttaatgtgttaaattgaaatcgtaT-----AT-TACAG--TCGAACC--T--C-G-TTATC-TC--AA--A-C-T--CATT---AG-GAC--CGAG---AAA-AAACTTCAAG-A----T--ATCT----GTGGATT-CGAGCT-AT-C--A--A-G-GG-TAAAAA--TAC-AT-A-G-AAAA---TAGATGA-AATAGGT-----AGCT-GGGACT---TC-----CAA--ATCACT------ATA--GCCATGGTATTTGTTAT-A-TCA--------GT--G-T---TC-GA--GATACCGAAG----TTCAACTG---Ttc
gi|3 : aatttgtatatgtatagtagaacatgT-----AT-TACAA--TCGAAGCATT--T-G-T-ATC-TC--GA--A-C-TT-GAT----GG-GAC---GAG---AAATAAACTTTA-G-AGA--T--ATTT----GTG---T-----AT-AT-C--G--A-G-G--TAAAAA--TAC-TA-AAG-AAAA---TAGGTGG-----C-T-----GG------ACT---TC-----CGA--TTCACTTTGA-CATA--GCCATGGTATTCGAGA--A-TCA--------GT--G-T---TC-GA--GATACCGAAG----TTCAACTG---TAtac
gi|11 : ttatgaaaacttttaagatttacaaaattgacttttc-----ATATACAG--TCGAACT--T--C-AATTA-C-TCATGA--A-C-TC-GATTG--GG-GAC--CGAG---AAA-ATCTTTGA-G-AA---T--ATCC----ATAGATT-CAAAAG-AT-C--G--A-G-AG-CAAAAA--TAC-TT-A-C-AAAA---T-GGTG------C-T--------T-GGAACT---TCAAAGTTAAGGATCATTTTGA-CATA--GCCATGTTTTTTTAGAT-A-TTG--------GT--G-T---TC-GA--GATACTGTAG----TTtatatgcaaagtagtttgcacaaattt
gi|2 : -----ATATACAG--TCGAACT--T--CAA-TTA-C-TCATGA--A-C-TC-GATTG--GG-GAC--CGAG---AAA-ATCTTTGA-GAA----T--ATCC----ATAGATT-CAAAAG-AT-C--GAAA-G-AG-CAAAAAG-TAC-TT-A-A-AAAA---TGGCTGCTTGGAC-TTTCAAAGTTAAGGAT-------------C--ATT--TTTGA-CATATCGCCATGTT-TTTTAGAT-ATTTG--------GT--G-T---TC-GA--GATttatgtatagtagtttc
gi|18 : aggtcttttctttataagac-----ATGTACAG--TCAAACC--T--T-G-TTATC-TT--GA--A-C-T--tacctgttagttttatgtatagtagttctcccattctaat
gi|13 : ttaagaatcagcacatgcagcaTATACAG--TCGAACCG-T--C-G-ATAT--TC--G-----C-TTGAAT----GG-GAC--CAAG---AAA-A------A-A-G----T---TCC----G---------AGAT-ATTC--G--A-G-GG-TAAAAA--TAT-TA-A-G-AAAA---TAG--GGT------T-----GGTT-GGGA-C---TC-----CAA--A-CAGTTCGA-C-TA----CATGGT-TTCGAGAT-A-T-A--------GTTGG-T---TC-G---GATATTGTAG----TT--ACTT---TAt
gi|5 : gaaattagaatatgcttttgtaaacagacatcagATACAG--TCAAACC--T--C-A-TTATC-TC--GA--A-C-TC-GAT----GG-GACTACAAA---AAA-AACTTTGA-G-G----T--ATCT----GAGGATT-CAAGAT-AT-C--C--A-G-GG-TAAAA---TAC-TG-A-A-AGAA---T---TAGT------------GGTT-GGAAGT---CC-----CGA--ATCACTTTGA-CATA--ACCATGGTATTTGAGAT-A-TCA--------GT--G-T---TC-GA--GATACCGAAG----TTCAACTG---TATTG-CA-AT-TAt
gi|5 : gaaagcctgtatgtaccttatagattcaatatctgaaATACAG--TTGAACT--T--C-G-GTATC-TC--GAACA-C-T--GAT----ccacaaa
gi|10 : gaaagcctgtatgtaccttatagattcaatatctgaaatacagtcaaacctcattatctcgaactcgatgggactacaaaaaaaactttgaggtatctgaggattcaagatatccagggtaaaatactgaaagaattagtggttggaagtcccgaatcactttgacataaccatggtatttgagatATACAA--TCGAACA--T--T-G-TTATC-TC--GA--A-C-TT-GAT----GG-GAC--GGAG---AAATAAACTTTA-G-AGA--T--ATTT----GTG---T-----AT-AT-C--G--A-G-GG-TAAAAA--TAC-TA-A-G-AAAA---TAGGTGGC--------------TT-GG-ACT---TC-----CGA--TTCACTTTGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TC-GA--GATACCGAAG----TTCAACTG---TAtgcaattaccacaaa
gi|4 : ATACAG--TCAAACT--T--C-G-TTATC-TC--GA--A-C-TC-AAA----AG-GAC--CA----------------A-G-A----T--GTCC----GTGGATT-TGAGAT-GT-C--G--A-G-GG-TAAAAA--TAC-TT-A-G-GAAA---TAGGTG---AC------------T-GGGACT---TC-----TGA--ATCACTTTGA-CATA--GCCATGGTATTTGAAAT-A-TTA--------GT--G-T---TT-GA--GATACCAAAG----TTCAACTG---TAtatatgcaaagtagtttgcacaaattttta
gi|7 : tgaagtaagtatattatagatattttcttaagagcaaACACAC--TCGAACT--T--C-G-TTATC-----GA--AAC-T--GATT---GGTGAC--CAAG---AAA-AAGTTCGA-G-A----T--ATCT----G-GGATT--GAGAC-TT-C--C--A-GAGG-T-AACA--TAC-TC-A-G-AAAG----AG-----------T-----AGCT-GGA--C---TC-----CA---ATTCG-TCGATCAT---ACC-TGGTAATTGAGAT-A-TCAAATTCACGGT--T-TCGATC-GA--GATATCGAAG----TTCAACTG---TAgttatgaatattttgtcaatcattatttggta
gi|14 : gagtttgtacagattaatagactaattagtgataTACAG--TTGAACT--T--C-G-ATATC-TC--GAACA-C-T--GAT----
gi|12 : atctcgaactcgatgggaccatgaaagaagttcgagatttcccggtgtggattcgagatatcgagggtaaaattactaagaaaataggtggttgggacctccaaattaattcgacataatcatggtattcgagatTACTG--TCAAACT--TTAC-G-TT-TC-TT--GA--A-G-TC-AATCATAGG-GAC--CGAG---AAA-AAACTT-A-G-AAGCAT--ATCC----GTGGATTTCGAGAT-AT-T--G--A-G-GGGTAAAAA--TATATA-T-G-AAAA---TAGGTG-----AC-T-----GG------ATT---TC-----CGA--ATCAGTTCGAACATA--GCCATGGTATTCGAGAT-A-TCA--------GT--GTT---TT-GA--GA-ACTGAAGCAGTTTCAACTG---TAattc
gi|15 : TACAG--TTGAACT--T--T-G-TTATC-TC--GAACA-C-T--GAT----gtttac
gi|7 : tcccggtgaatgtagaatttctgaatattgttaatatcnnnnnnnnnnnnnnnnnnnnnnnnntggctggacctccaaatcagttcgacataaccattgtattcgagatTACAG--TTGAACT--T--C-G-ATATC-TC--GA--T-C-----------GA-AAC--CGTG---AA-----TTT---G-A----T--ATC------TCAATTACCAGGT-AT-ga
gi|6 : gagtttgtacagattaatagactaattagtgataacacactcgaacttcgttatcgaaactgattggtgaccaagaaaaagttcgagatatctgggattgagacttccagaggtaacatactcagaaagagtagctggactccaattcgtcgatcACAGATCCGAAC---T--C-GCTTATCATC--GA--A-C-T--GAT----GG-GGA--AAAG---AAA-ATGTTTTA-G-A----T--ATCC----GTGAATT-CAGATT-AT-CTGG--ACG-GG-TAGAAAACTAC-TAGA-G-GAAAGATTAGGTGGTAACAC-T-----GGTT-GGGACCTGTTC-----TAC--ATCA-TTCGA-CATAT-ACCATGGTATTCGAGATCA-TCC--------AT--G-T---TC-GAACGATATCGTAG----TTCAACTGCTATAC-GCCACATGCAAGCAA--ATTTT
gi|9 : agACAG--TTGAACT--T--C-G-GTATC-TC--GAACA-C-T--GAT----
gi|14 : aatttgtatatgtatagtagaacatgtattacagtcgaacctcgttatctcaaactcattaggaccgagaaaaaacttcaagatatctgtggattcgagctatcaagggtaaaaatacatagaaaatagatgaaataggtagctgggacttccaaatcactatagccatggtatttgttatATC-TC--GA--A-C-TC-GAT----GG-GAC--CATG---AAAGAAGTTCGA-G-A----T--TTCCCGGTGTGGATT-CGAGAT-AT-C--G--A-G-GG-TAAAAT--TAC-TA-A-G-AAAA---TAGGTGGT---------------T-GGGACC---TC-----CAA--ATTAATTCGA-CATA--ATCATGGTATTCGAGAT-A-TCA--------GT--G-T---TC-GA--GATATCGAAG----TTCAACTG---TAtac
gi|15 : -T-----GGCT-GG-ACC---TC-----CAA--ATCAGTTCGA-CATA--ACCATTGTATTCGAGAT-A-TCA--------GT--G-T---TC-GA--GATAACAAAG----TTCAACTG---TAattc
gi|7 : tcccggtgaatgtagaatttctgaatattgttaatatcnnnnnnnnnnnnnnnnnnnnnnnnn-A-TCA--------GT----T---TC-GA----TAACGAAG----TTCGAGTG---TGTTATCA-ga
gi|17 : gagtttgtacagattaatagactaattag-A-TCA--------A---G-T---TCTGA--GATAACAAGG----TTCGACTG---TACtggtgaccaagaaaaagttcgagatatctgggattgagacttccagaggtaacatactcagaaagagtagctggactccaattcgtcgatcatacctggtaattgagatatcaaattcacggtttcgatcgagatatcgaagttcaactgta
gi|5 : tagcctgaatcactaacgatgggactgagaataaaaactacacagccat--G-T---TC-GA--GATAATGAGG----TTTGACTG---TATTgggaccgagaaaaa
gi|4 : gaaagcctgtatgtaccttatagattcaatatctga--G-T---TC-GA--GATAACGAAG----TTTGACTG---TATTTGCT-CT-TAAGAAAATATCTATAATATACTTACtcgatgggactacaaaaaaaactttgaggtatctgaggattcaagatatccagggtaaaatactgaaagaattagtggttggaagtcccgaatcactttgacataaccatggtatttgagatatcagtgttcgagataccgaagttcaactgtattgcaattaccacaaa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TTGTAAAACATTGCTGAAAAGGCTCACAAATTTCTG
Alignments
lowQualScore : 2 222 1 2222222222222222222222 1 1111 22 5555555555555555 11111111 3333333333 111111
lowQualScore : 3 0 2 000 3 6 7777777777777777777777 33 2 444 33 2 4 333 2 77 55 2 2 8 5555 2 33 2 99 5 22 2 8888 33 5555 2 2 0 5 2 2 2 33 33 2 2 2 66 33 5 2 444 11 9999999999999999 3 444 88888888 99 5 999 2 2 99999999 33 2 333 33 2 5555 3 444 0000000000 6 333333 1 7
lowQualScore : . . . ... . . ...................... .. . ... .. . . ... . .. .. . . . .... . .. . .. . .. . .... .. .... . . . . . . . .. .. . . . .. .. . . ... .. ................ . ... ........ .. . ... . . ........ .. . ... .. . .... . ... .......... . ...... . .
lowQualScore : 0 0 5 000 3 7 0000000000000000000000 11 2 222 11 2 4 777 1 99 88 1 1 9 3333 5 44 5 44 3 33 7 3333 77 7777 1 7 3 3 7 7 7 77 77 7 7 7 33 77 3 7 777 11 9999999999999999 4 777 33333333 88 3 444 5 5 11111111 11 2 999 11 2 0000 6 444 7777777777 7 222222 0 0
consensus : TAGCCTGANTCACATAGNGATGGGACTG-AGAAT-----C-TAC----TT-----ATATACAG--TCGAA-C-C-T--C-G-TTAT---C-TC--GA--A-C-TCGAT----GG-GAC--CGAG-AAA--AANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG------GT-----TGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACTGCC---A---AT-TAAGCAAATATCTATAAGATACTTAC
Reference ( family-295 ) : TAGCCTGAATCAC-TAACGATGGGACTG-AGAAT-----C-TAC----TT-----ATATACAG--TCGAA-C-T-T--C-G-TTAT---C-TC--GA--A-C-T-GAT----GG-GAC--CGAG-AAA--AAGTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG------GT----CTGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCGACTG---TACTGNC---A---AT-TAAGNAAATATCTNTAATATACTTAC
gi|1 : TAGCCTAACTTACATAGGGAT---ACTGCAGGAT-----C-TAC----TT-----ATATACAG--TCGAA-C-C-T--C-G-TTAT---C-TC--GA--A-C-T-GAT----GG-GAC--CAAG-AAA--ATGTTTT-AG-A----T--ATCC----GTGAATT-CAAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG------GTAACACTGGTTGGGACC---TCT--------ACATCA-GTTCGA-CATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TACTACC---A---AT-CAAGCAA--ATCTTTGAGATTCTTAC
gi|10 : ATACAA--TCGAA-C-A-T--T-G-TTAT---C-TC--GA--A-C-TTGAT----GG-GAC--GGAG-AAATAAACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG------G---------CTTGGACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAc
gi|10 : AAA-----C-TAC----TTTGCATATATACAG--TTGAA-C-T-T--C-G-GTAT---C-TC--GAACA-C-T-GAT----tatatgcaaagtagtttgcacaaattttta
gi|11 : atacaatcgaacattgttatctcgaacttgatgggacggagaaataaactttagagatatttgtgtatatcgagggtaaaaatactaagaaaataggtggcttggacttccgattcactttgacatagccatggtattcgagat-----ATATACAG--TCGAA-C-T-T--C-AATTA----C-TCATGA--A-C-TCGATTG--GG-GAC--CGAG-AAA--ATCTTTG-AG-AA---T--ATCC----ATAGATT-CAAA-A-G-AT-C--G--A-G-AG-CAAAAA--TACT-TA-C-AAAA---T-GGTG------------CT---TGGAACT---TCAAAGTTAA-GGATCA-TTTTGA-CATA--GCCATGTTTTTTTAGAT-A-TTG--------GT--G-T---TCGA--GA-TACTGTAG----TTgcacaaattttta
gi|12 : TACTG--TCAAA-C-T-TTAC-G-TT-T---C-TT--GA--A-G-TCAATCATAGG-GAC--CGAG-AAA--AAACTT--AG-AAGCAT--ATCC----GTGGATTTCGAG-A-T-AT-T--G--A-G-GGGTAAAAA--TATA-TATG-AAAA---TAGGTG------A---------CTGG-ATT---TCC--------GAATCA-GTTCGAACATA--GCCATGGTATTCGAGAT-A-TCA--------GT--GTT---TTGA--GA--ACTGAAGCAGTTTCAACTG---TAttatgtatagtagtttc
gi|13 : TATACAG--TCGAA-C-CGT--C-G-ATATTCGC-TT--GA--A-------T----GG-GAC--CAAG-AAA--AAA------------------------GT---TC-CGAG-A-T-ATTC--G--A-G-GG-TAAAAA--TATT-AA-G-AAAA---TAG--G------GT-----TGGTTGGGA-C---TCC--------AAA-CA-GTTCGA-C-TA----CATGGT-TTCGAGAT-A-T-A--------GTTGG-T---TCG---GA-TATTGTAG----TT--ACTT---TAgtttac
gi|14 : gaaattagaatatgcttttgtaaacagacatcagAT---C-TC--GA--A-C-TCGAT----GG-GAC--CATG-AAAG-AAGTTCG-AG-A----T--TTCCCGGTGTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAT--TACT-AA-G-AAAA---TAGGTG------GT---------TGGGACC---TCC--------AAATTA-ATTCGA-CATA--ATCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TAt
gi|15 : TGGCTGG-ACC---TCC--------AAATCA-GTTCGA-CATA--ACCATTGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TAACAAAG----TTCAACTG---TAattc
gi|16 : tcccggtgaatgtagaatttctgaatattgttaatatcnnnnnnnnnnnnnnnnnnnnnnnnn-TAT----TA-----ATATGCTG--TCGAA-C-C-T--T---TTAT---C-TT--GA--A-C-T-CAA----TG-GAC--CAAGCAAA--AAATGT--TG-A----T---TCC----GT-GATC-CCAG-A-TAAT-C--G--A---GG-TAACTA--TACT-CA-GAAAAA---TAAGCA-------------TGGCTGGGAga
gi|17 : tggaaTAGCCTGAATCAC-TAACGATGGGACTG-AGAATAAAAAC-TACACAGCC-----ATGTACAG--TCGAA-C-C-T--T-G-TTAT---C-TCA-GA--A-CTT-GAT----GG-GAC--CGAG-AAA--AA
gi|18 : -----ATGTACAG--TCAAA-C-C-T--T-G-TTAT---C-TT--GA--A-C-T-
gi|2 : ttaagaatcagcacatgcagca-----ATATACAG--TCGAA-C-T-T--CAA-TTA----C-TCATGA--A-C-TCGATTG--GG-GAC--CGAG-AAA--ATCTTTG-AGAA----T--ATCC----ATAGATT-CAAA-A-G-AT-C--GAAA-G-AG-CAAAAAG-TACT-TA-A-AAAA---TGG---------------CT-GCTTGGACT---TTCAAAGTTAAGGATCATTTTTGA-CATATCGCCATGTT-TTTTAGAT-ATTTG--------GT--G-T---TCGA--GATTACCt
gi|3 : aggtcttttctttataagacT-----AT-TACAA--TCGAAGCAT-T--T-G-T-AT---C-TC--GA--A-C-TTGAT----GG-GAC---GAG-AAATAAACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-G--TAAAAA--TACT-AAAG-AAAA---TAGGTG------G---------CTGG-ACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGA--A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAtgttagttttatgtatagtagttctcccattctaat
gi|3 : ttatgaaaacttttaagatttacaaaattgacttttcAAA-----C-TAC----TTTGCATATATACAG--TTGAA-C-T-T--C-G-GTAT---C-TC--GAACA-C-T-GAT----tatatgcaaagtagtttgcacaaattt
gi|4 : ttatgaaaacttttaagatttacaaaattgacttttctattacaatcgaagcatttgtatctcgaacttgatgggacgagaaataaactttagagatatttgtgtatatcgaggtaaaaatactaaagaaaataggtggctggacttccgattcactttgacatagccatggtattcgaga--G-T---TCGA--GA-TAACGAAG----TTTGACTG---TATTTGC---T---CT-TAAGAAAATATCTATAATATACTTACgcacaaattt
gi|4 : tgaaATACAG--TCAAA-C-T-T--C-G-TTAT---C-TC--GA--A-C-TCAAA----AG-GAC--CA----------------AG-A----T--GTCC----GTGGATT-TGAG-A-T-GT-C--G--A-G-GG-TAAAAA--TACT-TA-G-GAAA---TAGG---------------TGACTGGGACT---TCT--------GAATCA-CTTTGA-CATA--GCCATGGTATTTGAAAT-A-TTA--------GT--G-T---TTGA--GA-TACCAAAG----TTCAACTG---TAtcaaaaggaccaagatgtccgtggatttgagatgtcgagggtaaaaatacttaggaaataggtgactgggacttctgaatcactttgacatagccatggtatttgaaatattagtgtttgagataccaaagttcaactgtagttatgaatattttgtcaatcattatttggta
gi|5 : tgaagtaagtatattatagatattttcttaagagcaa--G-T---TCGA--GA-TAATGAGG----TTTGACTG---TATT-TC---AGATAT-TGA------ATCTATAAGGTACATACgttatgaatattttgtcaatcattatttggta
gi|5 : gaaagcctATACAG--TCAAA-C-C-T--C-A-TTAT---C-TC--GA--A-C-TCGAT----GG-GACTACAAA-AAA--AACTTTG-AG-G----T--ATCT----GAGGATT-CAAG-A-T-AT-C--C--A-G-GG-TAAAA---TACT-GA-A-AGAA---TTAGTG------GT---------TGGAAGT---CCC--------GAATCA-CTTTGA-CATA--ACCATGGTATTTGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TATTG-C---A---AT-TAtcgatgggactacaaaaaaaactttgaggtatctgaggattcaagatatccagggtaaaatactgaaagaattagtggttggaagtcccgaatcactttgacataaccatggtatttgagatatcagtgttcgagataccgaagttcaactgtattgcaattaccacaaa
gi|6 : gaaagcctgtatgtaccttatagattcaatatctgaaACAGATCCGAA-C-T----C-GCTTAT---CATC--GA--A-C-T-GAT----GG-GGA--AAAG-AAA--ATGTTTT-AG-A----T--ATCC----GTGAATT-C-AG-ATT-AT-CTGG--ACG-GG-TAGAAAACTACTAGA-G-GAAAGATTAGGTG------GTAACACTGGTTGGGACCTGTTCT--------ACATCA--TTCGA-CATAT-ACCATGGTATTCGAGATCA-TCC--------AT--G-T---TCGAACGA-TATCGTAG----TTCAACTGCTATAC-GCC---AC--ATGCAAGCAAATccacaaa
gi|7 : ag-A-TCA--------GT----T---TCGA-----TAACGAAG----TTCGAGTG---TGTTATCACTA---AT-TAttt
gi|7 : gagtttgtacagattaatagacACACAC--TCGAA-C-T-T--C-G-TTAT---C-----GA--AAC-T-GATT---GGTGAC--CAAG-AAA--AAGTTCG-AG-A----T--ATCT----G-GGATT--GAG-A-C-TT-C--C--A-GAGG-TAACA---TACT-CA-G-AAAG----AG----------------TAGCTGGA--C---TCC--------AATTCG---TCGATCATA---CC-TGGTAATTGAGAT-A-TCAAATTCACGGT--T-TCGATCGA--GA-TATCGAAG----TTCAACTG---TAtggtgaccaagaaaaagttcgagatatctgggattgagacttccagaggtaacatactcagaaagagtagctggactccaattcgtcgatcatacctggtaattgagatatcaaattcacggtttcgatcgagatatcgaagttcaactgta
gi|8 : gagtttgtacagattaatagactaattagtgataATTG-A-AAT-----CGTA------T-----ATATACAG--TCAAA-C-A-T--T-G-TTAT---C-TT--GA--A-C-TTGAT----GG-GAC--TGAG-AAA--AAAATT--CA-A----TTTATCC----ATGGATT-TAAG-A-T-AT-C--A--A-A-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG------G---------CTGGAACC---TTT--------GAATCA-CTTTGA-TATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TTGA--GA-TACCGAAG----TTCAACTG---TACT
gi|9 : aattttaatgtgttaaT-----AT-TACAG--TCGAA-C-C-T--C-G-TTAT---C-TC--AA--A-C-T-CATT---AG-GAC--CGAG-AAA--AAACTTCAAG-A----T--ATCT----GTGGATT-CGAG-C-T-AT-C--A--A-G-GG-TAAAAA--TACA-TA-G-AAAA---TAGATGAAATAGGT------AGCTGGGACT---TCC--------AAATCA-CT------ATA--GCCATGGTATTTGTTAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---Ttc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTGTAAAACATTGCTGAAAAGGCTCACAAATTTCTG
Alignments
lowQualScore : 1 222 1 2222222222222222222222 1111 11 222222222222 11111111 333333333 11
lowQualScore : 1 5 1 000 3 6 7777777777777777777777 33 777 33 2 4 2 77 2 2 4444 2 33 2 99 5 1 77 2 8888 33 5555 2 2 0 5 2 2 2 33 33 2 2 2 66 33 5 2 444 666666666666 8 0 0 444 88888888 99 5 999 2 2 99999999 33 2 444 33 2 5555 444 333333333 8 55 22
lowQualScore : . . . ... . . ...................... .. ... .. . . . .. . . .... . .. . .. . . .. . .... .. .... . . . . . . . .. .. . . . .. .. . . ... ............ . . . ... ........ .. . ... . . ........ .. . ... .. . .... ... ......... . .. ..
lowQualScore : 0 5 0 000 3 7 0000000000000000000000 11 111 11 2 4 1 99 2 5 7777 5 44 5 44 0 9 00 7 3333 77 7777 1 7 3 3 7 7 7 77 77 7 7 7 33 77 3 7 777 666666666666 6 9 2 777 33333333 88 3 444 7 7 77777777 22 4 111 22 4 3333 777 999999999 0 00 22
consensus : TAGCCTGANTCACATAGNGATGGGACTG-AGAAT-----C-TAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG-----GT-----TGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACT-GC-CA---AT-TAAGCAAATATCTATAAGATACTTAC
Reference ( family-295 ) : TAGCCTGANTCACATAGNGATGGGACTG-AGAAT-----C-TAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG-----GT-----TGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACT-GC-CA---AT-TAAGCAAATATCTATAAGATACTTAC
gi|1 : TAGCCTAACTTACATAGGGAT---ACTGCAGGAT-----C-TAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACT-GA-T----GG-GAC--CAAG-AAA--ATGTTTT--AG-A----T--ATCC----GTGAATT-CAAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----GTAACACTGGTTGGGACC---TCT--------ACATCA-GTTCGA-CATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TACT-AC-CA---AT-CAAGCAA--ATCTTTGAGATTCTTAC
gi|10 : ATACAA--TCGAACA--T--T-G-TTATC-TC--GAACTTGA-T----GG-GAC--GGAG-AAATAA-ACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----G---------CTTGGACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAc
gi|10 : AAA-----C-TAC----TTTGCATATATACAG--TTGAACT--T--C-G-GTATC-TC--GAACtatatgcaaagtagtttgcacaaattttta
gi|11 : atacaatcgaacattgttatctcgaacttgatgggacggagaaataaactttagagatatttgtgtatatcgagggtaaaaatactaagaaaataggtggcttggacttccgattcactttgacatagccatggtattcgagatatcagt-----ATATACAG--TCGAACT--T--C-AATTA-C-TCATGAACTCGA-TTG--GG-GAC--CGAG-AAA--A-TCTTTG-AG-AA---T--ATCC----ATAGATT-CAAA-A-G-AT-C--G--A-G-AG-CAAAAA--TACT-TA-C-AAAA---T-GGTG-----CT-----TGG----AACT---TCAAAGTTAA-GGATCA-TTTTGA-CATA--GCCATGTTTTTTTAGAT-A-TTG--------GT--G-T---TCGA--GA-TACTGTAG----TTgcacaaattttta
gi|12 : TACTG--TCAAACT--TTAC-G-TT-TC-TT--GAAGTCAA-TCATAGG-GAC--CGAG-AAA--A-AACTT--AG-AAGCAT--ATCC----GTGGATTTCGAG-A-T-AT-T--G--A-G-GGGTAAAAA--TATA-TATG-AAAA---TAGGTG-----AC-----TGG-----ATT---TCC--------GAATCA-GTTCGAACATA--GCCATGGTATTCGAGAT-A-TCA--------GT--GTT---TTGA--GA--ACTGAAGCAGTTTCAACTG---TAttatgtatagtagtttc
gi|13 : TATACAG--TCGAACCG-T--C-G-ATAT--TC--G--CTTGAAT----GG-GAC--CAAG-AAA--A-AA------------------------GT---TC-CGAG-A-T-ATTC--G--A-G-GG-TAAAAA--TATT-AA-G-AAAA---TAG--G-----GT-----TGGTTGGGA-C---TCC--------AAA-CA-GTTCGA-C-TA----CATGGT-TTCGAGAT-A-T-A--------GTTGG-T---TCG---GA-TATTGTAG----TT--ACTT---TAgtttac
gi|14 : gaaattagaatatgcttttgtaaacagacatcagATC-TC--GAACTCGA-T----GG-GAC--CATG-AAAG-A-AGTTCG-AG-A----T--TTCCCGGTGTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAT--TACT-AA-G-AAAA---TAGGTG-----GT-----TGG----GACC---TCC--------AAATTA-ATTCGA-CATA--ATCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TAt
gi|15 : -----TGGCTGG-ACC---TCC--------AAATCA-GTTCGA-CATA--ACCATTGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TAACAAAG----TTCAACTG---TAattc
gi|16 : tcccggtgaatgtagaatttctgaatattgttaatatcnnnnnnnnnnnnnnnnnnnnnnnnn-TAT----TA-----ATATGCTG--TCGAACC--T--T---TTATC-TT--GAACTCAA-T-----G-GAC--CAAGCAAA--A-AATGT--TG-A----T---TCC----GT-GATC-CCAG-A-TAAT-C--G--A---GG-TAACTA--TACT-CA-GAAAAA---TAAGCA------------TGGCTGGGAga
gi|17 : tggaaTAGCCTGAATCAC-TAACGATGGGACTG-AGAATAAAAAC-TACACAGCC-----ATGTACAG--TCGAACC--T--T-G-TTATC-TCA-GAACTTGA-T----GG-GAC--CGAG-AAA--A-A
gi|18 : -----ATGTACAG--TCAAACC--T--T-G-TTATC-TT--GAACT
gi|2 : ttaagaatcagcacatgcagca-----ATATACAG--TCGAACT--T--CAA-TTA-C-TCATGAACTCGA-TTG--GG-GAC--CGAG-AAA--A-TCTTTG-AGAA----T--ATCC----ATAGATT-CAAA-A-G-AT-C--GAAA-G-AG-CAAAAAG-TACT-TA-A-AAAA-------TG-----GC-----T-GCTTGGACT---TTCAAAGTTAAGGATCATTTTTGA-CATATCGCCATGTT-TTTTAGAT-ATTTG--------GT--G-T---TCGA--GATTACCt
gi|3 : aggtcttttctttataagacT-----AT-TACAA--TCGAAGCATT--T-G-T-ATC-TC--GAACTTGA-T----GG-GAC---GAG-AAATAA-ACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-G--TAAAAA--TACT-AAAG-AAAA---TAGGTG-----GC-----TGG-----ACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGA--A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAtgttagttttatgtatagtagttctcccattctaat
gi|3 : ttatgaaaacttttaagatttacaaaattgacttttcAAA-----C-TAC----TTTGCATATATACAG--TTGAACT--T--C-G-GTATC-TC--GAACtatatgcaaagtagtttgcacaaattt
gi|4 : ttatgaaaacttttaagatttacaaaattgacttttctattacaatcgaagcatttgtatctcgaacttgatgggacgagaaataaactttagagatatttgtgtatatcgaggtaaaaatactaaagaaaataggtggctggacttccgattcactttgacatagccatggtattcgagaatcagt--G-T---TCGA--GA-TAACGAAG----TTTGACTG---TATTTGCTC-----T-TAAGAAAATATCTATAATATACTTACgcacaaattt
gi|4 : tgaaATACAG--TCAAACT--T--C-G-TTATC-TC--GAACTCAA-A----AG-GAC--CAAG-A---------------------T--GTCC----GTGGATT-TGAG-A-T-GT-C--G--A-G-GG-TAAAAA--TACT-TA-G-GAAA---TAGGTG-----A---------CTGGGACT---TCT--------GAATCA-CTTTGA-CATA--GCCATGGTATTTGAAAT-A-TTA--------GT--G-T---TTGA--GA-TACCAAAG----TTCAACTG---TAtcaaaaggaccaagatgtccgtggatttgagatgtcgagggtaaaaatacttaggaaataggtgactgggacttctgaatcactttgacatagccatggtatttgaaatattagtgtttgagataccaaagttcaactgtagttatgaatattttgtcaatcattatttggta
gi|5 : tgaagtaagtatattatagatattttcttaagagcaa--G-T---TCGA--GA-TAATGAGG----TTTGACTG---TATT--T-CAGATAT-TGA------ATCTATAAGGTACATACgttatgaatattttgtcaatcattatttggta
gi|5 : gaaagcctATACAG--TCAAACC--T--C-A-TTATC-TC--GAACTCGA-T----GG-GACTACAAA-AAA--A-ACTTTG-AG-G----T--ATCT----GAGGATT-CAAG-A-T-AT-C--C--A-G-GG-TAAAA---TACT-GA-A-AGAA---TTAGTG-----GT-----TGG----AAGT---CCC--------GAATCA-CTTTGA-CATA--ACCATGGTATTTGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TATT-G--CA---AT-TAtcgatgggactacaaaaaaaactttgaggtatctgaggattcaagatatccagggtaaaatactgaaagaattagtggttggaagtcccgaatcactttgacataaccatggtatttgagatatcagtgttcgagataccgaagttcaactgtattgcaattaccacaaa
gi|6 : gaaagcctgtatgtaccttatagattcaatatctgaaACAGATCCGAAC---T--C-GCTTATCATC--GAACT-GA-T----GG-GGA--AAAG-AAA--ATGTTTT--AG-A----T--ATCC----GTGAATT-C-AG-ATT-AT-CTGG--ACG-GG-TAGAAAACTACTAGA-G-GAAAGATTAGGTG-----GTAACACTGGTTGGGACCTGTTCT--------ACATCA--TTCGA-CATAT-ACCATGGTATTCGAGATCA-TCC--------AT--G-T---TCGAACGA-TATCGTAG----TTCAACTGCTATAC--GC-CAC--ATGCAAGCAAATccacaaa
gi|7 : agACACAC--TCGAACT--T--C-G-TTATC-----GAAACTGA-TT---GGTGAC--CAAG-AAA--A-AGTTCG-AG-A----T--ATCT----G-GGATT--GAG-A-C-TT-C--C--A-GAGG-TAACA---TACT-CA-G-AAAG----AG---------------TAGCTGGA--C---TCC--------AATTCG---TCGATCATA---CC-TGGTAATTGAGAT-A-TCAAATTCACGGT--T-TCGATCGA--GA-TATCGAAG----TTCAACTG---TAttt
gi|8 : gagtttgtacagattaatagactaattagtgataATTG-A-AAT-----CGTA------T-----ATATACAG--TCAAACA--T--T-G-TTATC-TT--GAACTTGA-T----GG-GAC--TGAG-AAA--A-AAATT--CA-A----TTTATCC----ATGGATT-TAAG-A-T-AT-C--A--A-A-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----G---------CTGGAACC---TTT--------GAATCA-CTTTGA-TATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TTGA--GA-TACCGAAG----TTCAACTG---TACT-
gi|9 : aattttaatgtgttaaT-----AT-TACAG--TCGAACC--T--C-G-TTATC-TC--AAACTCAT-T----AG-GAC--CGAG-AAA--A-AACTTCAAG-A----T--ATCT----GTGGATT-CGAG-C-T-AT-C--A--A-G-GG-TAAAAA--TACA-TA-G-AAAA---TAGATGAAATAGG-----TAGCTGGGACT---TCC--------AAATCA-CT------ATA--GCCATGGTATTTGTTAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---Ttc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTGTAAAACATTGCTGAAAAGGCTCACAAATTTCTG
Alignments
lowQualScore : 1 222 1 2222222222222222222222 1111 11 222222222222 11111111 333333333 11
lowQualScore : 1 5 1 000 3 6 7777777777777777777777 33 777 33 2 4 2 77 2 2 4444 2 33 2 99 5 1 77 2 8888 33 5555 2 2 0 5 2 2 2 33 33 2 2 2 66 33 5 2 444 666666666666 8 0 0 444 88888888 99 5 999 2 2 99999999 33 2 444 33 2 5555 444 333333333 8 55 22
lowQualScore : . . . ... . . ...................... .. ... .. . . . .. . . .... . .. . .. . . .. . .... .. .... . . . . . . . .. .. . . . .. .. . . ... ............ . . . ... ........ .. . ... . . ........ .. . ... .. . .... ... ......... . .. ..
lowQualScore : 0 5 0 000 3 7 0000000000000000000000 11 111 11 2 4 1 99 2 5 7777 5 44 5 44 0 9 00 7 3333 77 7777 1 7 3 3 7 7 7 77 77 7 7 7 33 77 3 7 777 666666666666 6 9 2 777 33333333 88 3 444 7 7 77777777 22 4 111 22 4 3333 777 999999999 0 00 22
consensus : TAGCCTGANTCACATAGNGATGGGACTG-AGAAT-----C-TAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG-----GT-----TGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACT-GC-CA---AT-TAAGCAAATATCTATAAGATACTTAC
Reference ( family-295 ) : TAGCCTGANTCACATAGNGATGGGACTG-AGAAT-----C-TAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG-----GT-----TGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACT-GC-CA---AT-TAAGCAAATATCTATAAGATACTTAC
gi|1 : TAGCCTAACTTACATAGGGAT---ACTGCAGGAT-----C-TAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACT-GA-T----GG-GAC--CAAG-AAA--ATGTTTT--AG-A----T--ATCC----GTGAATT-CAAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----GTAACACTGGTTGGGACC---TCT--------ACATCA-GTTCGA-CATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TACT-AC-CA---AT-CAAGCAA--ATCTTTGAGATTCTTAC
gi|10 : ATACAA--TCGAACA--T--T-G-TTATC-TC--GAACTTGA-T----GG-GAC--GGAG-AAATAA-ACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----G---------CTTGGACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAc
gi|10 : AAA-----C-TAC----TTTGCATATATACAG--TTGAACT--T--C-G-GTATC-TC--GAACtatatgcaaagtagtttgcacaaattttta
gi|11 : atacaatcgaacattgttatctcgaacttgatgggacggagaaataaactttagagatatttgtgtatatcgagggtaaaaatactaagaaaataggtggcttggacttccgattcactttgacatagccatggtattcgagatatcagt-----ATATACAG--TCGAACT--T--C-AATTA-C-TCATGAACTCGA-TTG--GG-GAC--CGAG-AAA--A-TCTTTG-AG-AA---T--ATCC----ATAGATT-CAAA-A-G-AT-C--G--A-G-AG-CAAAAA--TACT-TA-C-AAAA---T-GGTG-----CT-----TGG----AACT---TCAAAGTTAA-GGATCA-TTTTGA-CATA--GCCATGTTTTTTTAGAT-A-TTG--------GT--G-T---TCGA--GA-TACTGTAG----TTgcacaaattttta
gi|12 : TACTG--TCAAACT--TTAC-G-TT-TC-TT--GAAGTCAA-TCATAGG-GAC--CGAG-AAA--A-AACTT--AG-AAGCAT--ATCC----GTGGATTTCGAG-A-T-AT-T--G--A-G-GGGTAAAAA--TATA-TATG-AAAA---TAGGTG-----AC-----TGG-----ATT---TCC--------GAATCA-GTTCGAACATA--GCCATGGTATTCGAGAT-A-TCA--------GT--GTT---TTGA--GA--ACTGAAGCAGTTTCAACTG---TAttatgtatagtagtttc
gi|13 : TATACAG--TCGAACCG-T--C-G-ATAT--TC--G--CTTGAAT----GG-GAC--CAAG-AAA--A-AA------------------------GT---TC-CGAG-A-T-ATTC--G--A-G-GG-TAAAAA--TATT-AA-G-AAAA---TAG--G-----GT-----TGGTTGGGA-C---TCC--------AAA-CA-GTTCGA-C-TA----CATGGT-TTCGAGAT-A-T-A--------GTTGG-T---TCG---GA-TATTGTAG----TT--ACTT---TAgtttac
gi|14 : gaaattagaatatgcttttgtaaacagacatcagATC-TC--GAACTCGA-T----GG-GAC--CATG-AAAG-A-AGTTCG-AG-A----T--TTCCCGGTGTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAT--TACT-AA-G-AAAA---TAGGTG-----GT-----TGG----GACC---TCC--------AAATTA-ATTCGA-CATA--ATCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TAt
gi|15 : -----TGGCTGG-ACC---TCC--------AAATCA-GTTCGA-CATA--ACCATTGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TAACAAAG----TTCAACTG---TAattc
gi|16 : tcccggtgaatgtagaatttctgaatattgttaatatcnnnnnnnnnnnnnnnnnnnnnnnnn-TAT----TA-----ATATGCTG--TCGAACC--T--T---TTATC-TT--GAACTCAA-T-----G-GAC--CAAGCAAA--A-AATGT--TG-A----T---TCC----GT-GATC-CCAG-A-TAAT-C--G--A---GG-TAACTA--TACT-CA-GAAAAA---TAAGCA------------TGGCTGGGAga
gi|17 : tggaaTAGCCTGAATCAC-TAACGATGGGACTG-AGAATAAAAAC-TACACAGCC-----ATGTACAG--TCGAACC--T--T-G-TTATC-TCA-GAACTTGA-T----GG-GAC--CGAG-AAA--A-A
gi|18 : -----ATGTACAG--TCAAACC--T--T-G-TTATC-TT--GAACT
gi|2 : ttaagaatcagcacatgcagca-----ATATACAG--TCGAACT--T--CAA-TTA-C-TCATGAACTCGA-TTG--GG-GAC--CGAG-AAA--A-TCTTTG-AGAA----T--ATCC----ATAGATT-CAAA-A-G-AT-C--GAAA-G-AG-CAAAAAG-TACT-TA-A-AAAA-------TG-----GC-----T-GCTTGGACT---TTCAAAGTTAAGGATCATTTTTGA-CATATCGCCATGTT-TTTTAGAT-ATTTG--------GT--G-T---TCGA--GATTACCt
gi|3 : aggtcttttctttataagacT-----AT-TACAA--TCGAAGCATT--T-G-T-ATC-TC--GAACTTGA-T----GG-GAC---GAG-AAATAA-ACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-G--TAAAAA--TACT-AAAG-AAAA---TAGGTG-----GC-----TGG-----ACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGA--A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAtgttagttttatgtatagtagttctcccattctaat
gi|3 : ttatgaaaacttttaagatttacaaaattgacttttcAAA-----C-TAC----TTTGCATATATACAG--TTGAACT--T--C-G-GTATC-TC--GAACtatatgcaaagtagtttgcacaaattt
gi|4 : ttatgaaaacttttaagatttacaaaattgacttttctattacaatcgaagcatttgtatctcgaacttgatgggacgagaaataaactttagagatatttgtgtatatcgaggtaaaaatactaaagaaaataggtggctggacttccgattcactttgacatagccatggtattcgagaatcagt--G-T---TCGA--GA-TAACGAAG----TTTGACTG---TATTTGCTC-----T-TAAGAAAATATCTATAATATACTTACgcacaaattt
gi|4 : tgaaATACAG--TCAAACT--T--C-G-TTATC-TC--GAACTCAA-A----AG-GAC--CAAG-A---------------------T--GTCC----GTGGATT-TGAG-A-T-GT-C--G--A-G-GG-TAAAAA--TACT-TA-G-GAAA---TAGGTG-----A---------CTGGGACT---TCT--------GAATCA-CTTTGA-CATA--GCCATGGTATTTGAAAT-A-TTA--------GT--G-T---TTGA--GA-TACCAAAG----TTCAACTG---TAtcaaaaggaccaagatgtccgtggatttgagatgtcgagggtaaaaatacttaggaaataggtgactgggacttctgaatcactttgacatagccatggtatttgaaatattagtgtttgagataccaaagttcaactgtagttatgaatattttgtcaatcattatttggta
gi|5 : tgaagtaagtatattatagatattttcttaagagcaa--G-T---TCGA--GA-TAATGAGG----TTTGACTG---TATT--T-CAGATAT-TGA------ATCTATAAGGTACATACgttatgaatattttgtcaatcattatttggta
gi|5 : gaaagcctATACAG--TCAAACC--T--C-A-TTATC-TC--GAACTCGA-T----GG-GACTACAAA-AAA--A-ACTTTG-AG-G----T--ATCT----GAGGATT-CAAG-A-T-AT-C--C--A-G-GG-TAAAA---TACT-GA-A-AGAA---TTAGTG-----GT-----TGG----AAGT---CCC--------GAATCA-CTTTGA-CATA--ACCATGGTATTTGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TATT-G--CA---AT-TAtcgatgggactacaaaaaaaactttgaggtatctgaggattcaagatatccagggtaaaatactgaaagaattagtggttggaagtcccgaatcactttgacataaccatggtatttgagatatcagtgttcgagataccgaagttcaactgtattgcaattaccacaaa
gi|6 : gaaagcctgtatgtaccttatagattcaatatctgaaACAGATCCGAAC---T--C-GCTTATCATC--GAACT-GA-T----GG-GGA--AAAG-AAA--ATGTTTT--AG-A----T--ATCC----GTGAATT-C-AG-ATT-AT-CTGG--ACG-GG-TAGAAAACTACTAGA-G-GAAAGATTAGGTG-----GTAACACTGGTTGGGACCTGTTCT--------ACATCA--TTCGA-CATAT-ACCATGGTATTCGAGATCA-TCC--------AT--G-T---TCGAACGA-TATCGTAG----TTCAACTGCTATAC--GC-CAC--ATGCAAGCAAATccacaaa
gi|7 : agACACAC--TCGAACT--T--C-G-TTATC-----GAAACTGA-TT---GGTGAC--CAAG-AAA--A-AGTTCG-AG-A----T--ATCT----G-GGATT--GAG-A-C-TT-C--C--A-GAGG-TAACA---TACT-CA-G-AAAG----AG---------------TAGCTGGA--C---TCC--------AATTCG---TCGATCATA---CC-TGGTAATTGAGAT-A-TCAAATTCACGGT--T-TCGATCGA--GA-TATCGAAG----TTCAACTG---TAttt
gi|8 : gagtttgtacagattaatagactaattagtgataATTG-A-AAT-----CGTA------T-----ATATACAG--TCAAACA--T--T-G-TTATC-TT--GAACTTGA-T----GG-GAC--TGAG-AAA--A-AAATT--CA-A----TTTATCC----ATGGATT-TAAG-A-T-AT-C--A--A-A-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----G---------CTGGAACC---TTT--------GAATCA-CTTTGA-TATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TTGA--GA-TACCGAAG----TTCAACTG---TACT-
gi|9 : aattttaatgtgttaaT-----AT-TACAG--TCGAACC--T--C-G-TTATC-TC--AAACTCAT-T----AG-GAC--CGAG-AAA--A-AACTTCAAG-A----T--ATCT----GTGGATT-CGAG-C-T-AT-C--A--A-G-GG-TAAAAA--TACA-TA-G-AAAA---TAGATGAAATAGG-----TAGCTGGGACT---TCC--------AAATCA-CT------ATA--GCCATGGTATTTGTTAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---Ttc
blockSeqs : A . C GGG . G TAAAAACTACACAGCC AT CAT TA A A A AT T A CATA T TA C TA T C CA A AGCA TT CGGT A T T T A T TG AA C A G AC AG T A GAT GTAACAC C TGT AAAGTTAA TT A TCG C T AATTCACG TG T CGA AC T CAGT CTA TCAGAT G GA AT
blockSeqs : . . ACTACTTTGCAT . CG . . C . AT C . TG . . . TA . C G . A . . G . T . . . . . . . . G A A . . AAATAGG T . AAGTTAA C T TA . . . . . . . . . . TGCTC . GC AT
blockSeqs : ACTACTTTGCAT . A . . . . A C . TG . . . G . A G . . . . G . . . . . . . . . . . T . . . CT C . . T . G . . . . . . . . . . GCCAC . . .
blockSeqs : TCGTAT . T . . . . . T . T . . . . . A G . . . . A . . . . . . . . . . . T . . . AC C . . G . G . . . . . . . . . . GCA .
blockSeqs : . T . . . . . C . . . . . . . G G . . . . G . . . . . . . . . . . A . . . GT C . . G . G . . . . . . . . . .
blockSeqs : . T . . . . . C . . . . . . . A G . . . . G . . . . . . . . . . . A . . . GT C . . A . A . . . . . . . . . .
blockSeqs : . C . . . . . T . . . . . . . C . . . . . G . . . . . . . . . . . C . . . GC T . . G . A . . . . . . . . . .
blockSeqs : . C . . . . . C . . . . . . . C . . . . . G . . . . . . . . . . . T . . . GC C . . C . G . . . . . . . . . .
blockSeqs : . C . . . . . T . . . . . . . C . . . . . G . . . . . . . . . . . A . . . GT C . . C . G . . . . . . . . . .
blockSeqs : . T . . . . . C . . . . . . . T . . . . . G . . . . . . . . . . . T . . . G C . . C . A . . . . . . . . . .
blockSeqs : . T . . . . . C . . . . . . . G . . . . . . . . . . . . . . . . . G . . . A . . . C . A . . . . . . . . . .
blockSeqs : . T . . . . . T . . . . . . . A . . . . . . . . . . . . . . . . . C . . . G . . . C . G . . . . . . . . . .
blockSeqs : . C . . . . . T . . . . . . . A . . . . . . . . . . . . . . . . . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . T . . . . . C . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . . . . . . . . . . . .
blockSeqs : . C . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . .
blockSeqCons : ACTACTCGCAT*********** GC********** TCAC*****
originalCons : TAGCCTGANTCACATAGNGATGGGACTG-AGAAT-----C-TAC----TT-----ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG-----GT-----TGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACT-GC-CA---AT-TAAGCAAATATCTATAAGATACTTAC
finalCons : TAGCCTGANTCACATAGNGATGGGACTG-AGAAACTACTCGCAT-----------ATATACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTGGC----------TGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACTTCAC-----AT-TAAGCAAATATCTATAAGATACTTAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTGTAAAACATTGCTGAAAAGGCTCACAAATTTCTG
Alignments
lowQualScore : 1 222 2 22222 22 1111 11 111111111111 1 11111111 11111 11
lowQualScore : 1 5 1 000 0 55555 66 2 33 777 33 2 4 2 77 2 2 4444 2 33 2 99 5 1 77 2 8888 33 5555 2 2 0 5 2 2 2 33 33 2 2 2 66 33 5 2 444 0 999999999999 0 2 3 6666 88888888 99 5 999 2 2 99999999 33 2 444 33 2 5555 444 3 4 22222 8 55 22
lowQualScore : . . . ... . ..... .. . .. ... .. . . . .. . . .... . .. . .. . . .. . .... .. .... . . . . . . . .. .. . . . .. .. . . ... . ............ . . . .... ........ .. . ... . . ........ .. . ... .. . .... ... . . ..... . .. ..
lowQualScore : 0 5 0 000 0 00000 44 2 11 111 11 2 4 1 99 2 5 7777 5 44 5 44 0 9 00 7 3333 77 7777 1 7 3 3 7 7 7 77 77 7 7 7 33 77 3 7 777 7 999999999999 4 8 9 5555 33333333 88 3 444 7 7 77777777 22 4 111 22 4 3333 777 7 4 22222 0 00 22
consensus : TAGCCTGANTCACATAGNGATGGGACTGCAGAA-----ACTACTC-GCATATAT-ACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG-----G-----CTGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TANTT-C--ACAT-TAAGCAAATATCTATAAGATACTTAC
Reference ( family-295 ) : TAGCCTGANTCACATAGNGATGGGACTG-AGAA-----ACTACTC-GCATATAT-ACAG--TCGAACC--T--C-G-TTATC-TC--GAACTCGA-T----GG-GAC--CGAG-AAA--A-ANTTT--AG-A----T--ATCC----GTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-NA-G-AAAA---TAGGTG-----G-----CTGGCTGGGACC---TCC--------GAATCA-CTTCGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TACTT-C--ACAT-TAAGCAAATATCTATAAGATACTTAC
gi|1 : TAGCCTAACTTACATAGGGAT---ACTGCAGGA-----TCTACT-----TATAT-ACAG--TCGAACC--T--C-G-TTATC-TC--GAACT-GA-T----GG-GAC--CAAG-AAA--ATGTTTT--AG-A----T--ATCC----GTGAATT-CAAG-A-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----GTAACACTGGTTGGGACC---TCT--------ACATCA-GTTCGA-CATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TACTA-C--CAAT-CAAGCAA--ATCTTTGAGATTCTTAC
gi|10 : AT-ACAA--TCGAACA--T--T-G-TTATC-TC--GAACTTGA-T----GG-GAC--GGAG-AAATAA-ACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----G-----CT---TGG-ACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAc
gi|10 : AA-----ACTACTTTGCATATAT-ACAG--TTGAACT--T--C-G-GTATC-TC--GAACtatatgcaaagtagtttgcacaaattttta
gi|11 : atacaatcgaacattgttatctcgaacttgatgggacggagaaataaactttagagatatttgtgtatatcgagggtaaaaatactaagaaaataggtggcttggacttccgattcactttgacatagccatggtattcgagatatcagtATAT-ACAG--TCGAACT--T--C-AATTA-C-TCATGAACTCGA-TTG--GG-GAC--CGAG-AAA--A-TCTTTG-AG-AA---T--ATCC----ATAGATT-CAAA-A-G-AT-C--G--A-G-AG-CAAAAA--TACT-TA-C-AAAA---T-GGTG-----------CT---TGGAACT---TCAAAGTTAA-GGATCA-TTTTGA-CATA--GCCATGTTTTTTTAGAT-A-TTG--------GT--G-T---TCGA--GA-TACTGTAG----TTgcacaaattttta
gi|12 : T-ACTG--TCAAACT--TTAC-G-TT-TC-TT--GAAGTCAA-TCATAGG-GAC--CGAG-AAA--A-AACTT--AG-AAGCAT--ATCC----GTGGATTTCGAG-A-T-AT-T--G--A-G-GGGTAAAAA--TATA-TATG-AAAA---TAGGTG-----A-----CTGG-----ATT---TCC--------GAATCA-GTTCGAACATA--GCCATGGTATTCGAGAT-A-TCA--------GT--GTT---TTGA--GA--ACTGAAGCAGTTTCAACTG---TAGTT-T--ACttatgtatagtagtttc
gi|13 : TAT-ACAG--TCGAACCG-T--C-G-ATAT--TC--G--CTTGAAT----GG-GAC--CAAG-AAA--A-AA------------------------GT---TC-CGAG-A-T-ATTC--G--A-G-GG-TAAAAA--TATT-AA-G-AAAA---TAG--G-----G-----TTGGTTGGGA-C---TCC--------AAA-CA-GTTCGA-C-TA----CATGGT-TTCGAGAT-A-T-A--------GTTGG-T---TCG---GA-TATTGTAG----TT--ACTT---TA
gi|14 : gaaattagaatatgcttttgtaaacagacatcagATC-TC--GAACTCGA-T----GG-GAC--CATG-AAAG-A-AGTTCG-AG-A----T--TTCCCGGTGTGGATT-CGAG-A-T-AT-C--G--A-G-GG-TAAAAT--TACT-AA-G-AAAA---TAGGTG-----G-----TTGG----GACC---TCC--------AAATTA-ATTCGA-CATA--ATCATGGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TATCGAAG----TTCAACTG---TAATT-C--t
gi|15 : TGGCTGG-ACC---TCC--------AAATCA-GTTCGA-CATA--ACCATTGTATTCGAGAT-A-TCA--------GT--G-T---TCGA--GA-TAACAAAG----TTCAACTG---TA
gi|16 : tcccggtgaatgtagaatttctgaatattgttaatatcnnnnnnnnnnnnnnnnnnnnnnnnnATAT-GCTG--TCGAACC--T--T---TTATC-TT--GAACTCAA-T-----G-GAC--CAAGCAAA--A-AATGT--TG-A----T---TCC----GT-GATC-CCAG-A-TAAT-C--G--A---GG-TAACTA--TACT-CA-GAAAAA---TAAGCA------------TGGCTGGGAga
gi|17 : tggaatattaTAGCCTGAATCAC-TAACGATGGGACTG-AGAATAAAAACTACACAGC-CATGT-ACAG--TCGAACC--T--T-G-TTATC-TCA-GAACTTGA-T----GG-GAC--CGAG-AAA--A-A
gi|18 : -GCA-ATGT-ACAG--TCAAACC--T--T-G-TTATC-TT--GAACT
gi|2 : ttaagaatcagcacatgcaACATAT-ACAG--TCGAACT--T--CAA-TTA-C-TCATGAACTCGA-TTG--GG-GAC--CGAG-AAA--A-TCTTTG-AGAA----T--ATCC----ATAGATT-CAAA-A-G-AT-C--GAAA-G-AG-CAAAAAG-TACT-TA-A-AAAA-------TG-----G-----CT-GCTTGGACT---TTCAAAGTTAAGGATCATTTTTGA-CATATCGCCATGTT-TTTTAGAT-ATTTG--------GT--G-T---TCGA--GATTACCt
gi|3 : aggtcttttctttataagTAT-T-ACAA--TCGAAGCATT--T-G-T-ATC-TC--GAACTTGA-T----GG-GAC---GAG-AAATAA-ACTTT--AG-A----G--AT----------ATT-TGTGTA-T-AT-C--G--A-G-G--TAAAAA--TACT-AAAG-AAAA---TAGGTG-----G-----CTGG-----ACT---TCC--------GATTCA-CTTTGA-CATA--GCCATGGTATTCGAGA--A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TAtgttagttttatgtatagtagttctcccattctaat
gi|3 : ttatgaaaacttttaagatttacaaaattgacttttcAA-----ACTACTTTGCATATAT-ACAG--TTGAACT--T--C-G-GTATC-TC--GAACtatatgcaaagtagtttgcacaaattt
gi|4 : ttatgaaaacttttaagatttacaaaattgacttttctattacaatcgaagcatttgtatctcgaacttgatgggacgagaaataaactttagagatatttgtgtatatcgaggtaaaaatactaaagaaaataggtggctggacttccgattcactttgacatagccatggtattcgagaatcagt--G-T---TCGA--GA-TAACGAAG----TTTGACTG---TATTTGC--TC-T-TAAGAAAATATCTATAATATACTTACgcacaaattt
gi|4 : tgaaAT-ACAG--TCAAACT--T--C-G-TTATC-TC--GAACTCAA-A----AG-GAC--CA-----------------AG-A----T--GTCC----GTGGATT-TGAG-A-T-GT-C--G--A-G-GG-TAAAAA--TACT-TA-G-GAAA---TAGG--------------TGACTGGGACT---TCT--------GAATCA-CTTTGA-CATA--GCCATGGTATTTGAAAT-A-TTA--------GT--G-T---TTGA--GA-TACCAAAG----TTCAACTG---TAGTT-tcaaaaggaccaagatgtccgtggatttgagatgtcgagggtaaaaatacttaggaaataggtgactgggacttctgaatcactttgacatagccatggtatttgaaatattagtgtttgagataccaaagttcaactgtagttatgaatattttgtcaatcattatttggta
gi|5 : tgaagtaagtatattatagatattttcttaagagcaa--G-T---TCGA--GA-TAATGAGG----TTTGACTG---TATTT-CAGATAT-TGA------ATCTATAAGGTACATACatgaatattttgtcaatcattatttggta
gi|5 : gaaagcctAT-ACAG--TCAAACC--T--C-A-TTATC-TC--GAACTCGA-T----GG-GACTACAAA-AAA--A-ACTTTG-AG-G----T--ATCT----GAGGATT-CAAG-A-T-AT-C--C--A-G-GG-TAAAA---TACT-GA-A-AGAA---T---TA-----G------TGGTTGGAAGT---CCC--------GAATCA-CTTTGA-CATA--ACCATGGTATTTGAGAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---TATTG-C--A-AT-TAtcgatgggactacaaaaaaaactttgaggtatctgaggattcaagatatccagggtaaaatactgaaagaattagtggttggaagtcccgaatcactttgacataaccatggtatttgagatatcagtgttcgagataccgaagttcaactgtattgcaattaccacaaa
gi|6 : gaaagcctgtatgtaccttatagattcaatatctgaa-ACAGATCCGAAC---T--C-GCTTATCATC--GAACT-GA-T----GG-GGA--AAAG-AAA--ATGTTTT--AG-A----T--ATCC----GTGAATT-C-AG-ATT-AT-CTGG--ACG-GG-TAGAAAACTACTAGA-G-GAAAGATTAGGTG-----GTAACACTGGTTGGGACCTGTTCT--------ACATCA--TTCGA-CATAT-ACCATGGTATTCGAGATCA-TCC--------AT--G-T---TCGAACGA-TATCGTAG----TTCAACTGCTATACGC-C--ACATGCAAGCAAATccacaaa
gi|7 : agATA-AC-ACAC--TCGAACT--T--C-G-TTATC-----GAAACTGA-TT---GGTGAC--CAAG-AAA--A-AGTTCG-AG-A----T--ATCT----G-GGATT--GAG-A-C-TT-C--C--A-GAGG-TAACA---TACT-CA-G-AAAG-----AGTA-----G-----CTGG-----AC----TCC--------AATTCG---TCGATCATA---CC-TGGTAATTGAGAT-A-TCAAATTCACGGT--T-TCGATCGA--GA-TATCGAAG----TTCAACTG---TAttt
gi|8 : gagtttgtacagattaatagactaattagtgTC-GTATATAT-ACAG--TCAAACA--T--T-G-TTATC-TT--GAACTTGA-T----GG-GAC--TGAG-AAA--A-AAATT--CA-A----TTTATCC----ATGGATT-TAAG-A-T-AT-C--A--A-A-GG-TAAAAA--TACT-AA-G-AAAA---TAGGTG-----G-----CTGG----AACC---TTT--------GAATCA-CTTTGA-TATA--ACCATGGTATTCGAGAT-A-TCA--------GT--G-T---TTGA--GA-TACCGAAG----TTCAACTG---TACTT-C--
gi|9 : aattttaatgtgttaaattgaaaCATGTATTACAG--TCGAACC--T--C-G-TTATC-TC--AAACTCAT-T----AG-GAC--CGAG-AAA--A-AACTTCAAG-A----T--ATCT----GTGGATT-CGAG-C-T-AT-C--A--A-G-GG-TAAAAA--TACA-TA-G-AAAA---TAGATGAAATAG-----GTAGCTGGGACT---TCC--------AAATCA-CT------ATA--GCCATGGTATTTGTTAT-A-TCA--------GT--G-T---TCGA--GA-TACCGAAG----TTCAACTG---T
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|19 ): TTGTAAAACATTGCTGAAAAGGCTCACAAATTTCTG