lowQualScore : 444444444444444444444444444444444444444444444444 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111 11111111111111111 1111111111111111111111
lowQualScore : 1 000000000000000000000000000000000000000000000000 4 4 4 22 99999999999999 4 4 444 222 1 2222 555555555555 1 666 444 2 4 44 444 1 55555555555555555555 2 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 22 4 1 1 3333333333 1 3 1 44 11 1 44444444444 11 77777777 1 1 99999999999999999999 2 2 11 44 1 4 22 2 111 2 777777 2222 1 11 11 999999999999999999999999999999999 44444 111 2 222 33333 333 1 1 111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1 4 55 777 1 666 4 0000000000000000000000000000000000000000000000000 2 1 44444444444444444 2 33 333 33 555555555555 1 1 66666 2 666666 666 4 1 1 1 2 555555 222 11111111111111111 4 6666666666666666666666666666666666 1 2222 1111111111111111111111 33333 1 4 444 55 1
lowQualScore : 5 3 4 222222222222222222222222222222222222222222222222 0 0 0 77 33333333333333 6 0 0 4 666 111 5 5555 999999999999 2 4 5 111 111 0 0 33 6 555 5 44444444444444444444 6 6 8 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 00 6 0 3 7 7 3 6 4444444444 6 0 1 0 3 66 2 33 8 7 5 66666666666 44 22222222 3 6 5 66666666666666666666 4 0 0 88 4 33 5 0 77 4 0 222 2 0 888888 9999 4 3 88 88 888888888888888888888888888888888 6 4 9 6 77777 333 6 1 0 333 77 00000 3 555 5 1 3 000 5 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 0 6 55 000 5 111 6 0 8888888888888888888888888888888888888888888888888 6 3 7 6 1 5 99999999999999999 2 0 11 6 666 00 111111111111 0 7 77777 1 8 7 7 0 8 7 0 6 777777 111 6 0 3 6 6 3 7 6 444444 333 4 11111111111111111 0 6666666666666666666666666666666666 7 1111 4444444444444444444444 3 4 66666 5 0 666 6 55 7
lowQualScore : . . . ................................................ . . . .. .............. . . . . ... ... . .... ............ . . . ... ... . . .. . ... . .................... . . . ............................................................................................................................ .. . . . . . . . .......... . . . . . .. . .. . . . ........... .. ........ . . . .................... . . . .. . .. . . .. . . ... . . ...... .... . . .. .. ................................. . . . . ..... ... . . . ... .. ..... . ... . . . ... . ................................................................................................................................................ . . . .. ... . ... . . ................................................. . . . . . . ................. . . .. . ... .. ............ . . ..... . . . . . . . . . ...... ... . . . . . . . . ...... ... . ................. . .................................. . .... ...................... . . ..... . . ... . .. .
lowQualScore : 0 0 0 000000000000000000000000000000000000000000000000 0 0 0 55 55555555555555 0 0 0 0 000 000 0 0000 000000000000 5 0 0 000 555 0 0 00 0 555 0 22222222222222222222 0 7 7 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 77 0 0 3 3 3 3 0 4444444444 0 0 5 0 2 00 5 88 8 0 0 00000000000 77 00000000 3 0 0 22222222222222222222 0 0 0 55 0 00 5 0 55 0 0 000 5 0 000000 0000 0 3 33 33 333333333333333333333333333333333 7 7 0 7 22222 222 7 0 7 222 99 66666 9 777 7 4 7 000 7 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5 0 0 00 000 0 000 0 0 5555555555555555555555555555555555555555555555555 0 7 3 0 0 0 55555555555555555 5 0 00 0 555 00 000000000000 5 0 00000 0 3 3 3 7 3 3 0 0 000000 000 7 0 3 7 7 3 0 7 777777 333 0 00000000000000000 0 5555555555555555555555555555555555 0 0000 5555555555555555555555 0 0 00000 0 0 000 0 00 0
consensus : NAAGGATGAAGTGNAGTCTCCNTATGCGC-GGT--------------------CTGGNCCCTTTTTCATCGCATTGACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTNCTACATAAAC-GCCACAAA-GANTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGNTGAAAAATCGACNGATTTCTAAACCTCAT--ACCGGGCANTTTCCCGTCAA-GGTTTGTAATATCTTCATT-CNTCATGAAGTAATGATATAATAG-A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAA--TAGACCGCG--TGCG--ATTCNCC--GTTTGCAT-----GGTAAA--TAAACA--TAGA--AC----AAACGTCAA--TT-CCACA-CTATTTTAATTCGATGT----------GTATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCCA--CAAA-ATA-CATCC-CTATCTT-TCAANA--ATATAAATGGAATGCGA---------TATTTTGATTGCGTGTT---ATA-CATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TANACATAATATANATGTGANGTGT-NAAATTAATTTTGNTGGGTGATTTANATAACNGNTANTAGTGGCATTTCACCTTGC-AAATGATNTAAAACNGTCA-TTTGT--TTT--AGAAAAA------C-TAGATTTT----ATCTT-CGC---TAGCCA-AGGGTTTTCG-GTT---CCAC-T-CCGCT-C-CCTATGG-GG--GAGCC---GGAGTGGACCGAAA---C-C-TTGGC---TAGCG-AA-TT---TGCT--TCGAAAACTACACGCA------TATTTAAATA-T--ACTACA-AATATCTAA---ATA-CAA--ATTCATCNAAAG--ACAGATTTTTGNNTGGTTGGTAAATACAGATTANTGTANTCGAAAGGGCTACTGACTTTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTGTG-TATCCGTCTT----ATAGGGGGCGAGAGATTCAAGGTAGGT--CGNTCGGAGTTC-AAATCTGGTTTCCATAAT-GGGGTAAGGNNCTGGTGAAATTCTTNCCGTATTTATTTTTTTNNAATATCCGGCGATTTAGCAATGTACGGNTATCGCTGT--TACGAATTTTAAAAGTTTTTAATAATATACAAACACAGCCTGANNNNNNAACCGTATG--GTCCATCGAACTT--ATGTTTCTTGGGTTATAAAA-GTGT-GGGCGGG-CTAAATGCCTACGAGAAATGCA-GCT--AATGAGGAAACC-CCANGCTTTGAACCTCAGACTT-ATATA-CCGTTTGTGGCGAATTTGTGTGCCACGTGTAGNAGTTTAANAANTCA-TAGAAGTACAAATGTTGAATGAGCTGAATC-CTGTAAAT-----TTNAACNTGAAANCAAAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
Reference ( gi|1 ) : AAAGGATCAAGTGAAGTCTCCATATGCGCTGGCCCCTTTTTACATTACTGCGCCTGGGCCCGCTTTCATTACATT-ACTACATAACTCCAAAACTAACTACA--CTAAAGTTAGGAATTTTT------ACAAACAGCCACAAAAGAATGAGT-CTGAACACTTTTGATAGTTCCCTTTCTTATATTGTGCATGCATGGATATGCTGAAAAATCGACTGATTTCTAAACCTCATGAGCCGGG-AGTTT-TCGTCAAGGGTTTGTAA-GTCTTTATTCCTTCATGACATAATGATATAATAA-ACAGGAGGATGGACGGGTCTAGAACAGAAT---GAATCTAGACCGCGCCTGCG--ATTTGCC--GTTTGTAT-----GATAAATTTAAACAATTAGA--AC----AAACGTCAACGTTGCCACACCTATTTTAATTCGATGTAACTTAAATGATATATAT-TTTTGATATTGA-TTTATATACTAAATATT-CACACGA-TTAGCCA--CAGA-ATAGTATCC-CTATCTCATCAAGA--ATATAAATGGAATTCGA---------TCTTTTGATTGCATGTCTGAATACCATGCCTGCAT-GTGCGGCAGCATG----TATG-GTATACATTTGTATA-ATAA-ATATATGTAATGTGTAAAAATTAATTTTG-TGGATAA--TATA-AATCAATACTAGT-GCATTTCACC--GCAAAATGA-GTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-CAGACTTT----ATCTTGTGC-AGTAGCCA-AGGTTTTTCG-GCTG--CCAC-C-CTGCT-CGCCTGTGGCGG--GAGTC---GGAATGGACCAAAA---C-C-TTGAC---TAGCG-AA-TTCAGTGGTGGTGAAAAACTACACGTA------TATTTAAATAGTATACTACAGAATATCTAA---ATA-CAA--ATTTATCAAGAGTCATAGA--TTTAGGT-GTT-GTAAAT--AAATTA-TATAATCG-A--GAC-----ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGCCGGACAATGCACTTCAAATCACGTGTGTTATCGGTCCTTTTGATATGAGGCGAGAG-TTCACAGTATGTAATGG--GAAGTTCAAAATCTGGCTTTCCTAATTGGAGTAAGGTGCTA-TGAAATTTTTCCCA-ATTTATTTTCTAAAAATATCCGGCGACTTAACAATAAGCGGTTAACGCTATTTTACAATTTTTAAAAGTTTTTAATGATATTCAAACACA-CCTGATCCTGTAATCG-ATGATGTCCATCGAATTTTAGTGTTTCTTGGGTGATAAAAAGTGT-GCGCGGG-CTTAATGCCTATGAG-AATGCAGGCTGTAATGAGGAAACC-C-AAGCTTTGAA-CTTAGACTTAATATAGTCGTTTGTGGCGAA-TTATACGTCATATGTAGCA-TT---AAATTCATTAAAAGTACAATTG-TG-ATGA--TGAAACATTGTAAGTGGTTATTTAACATGATAACAAAGAAAATGTATTTTTATTAAATATAGT-GGGGCCGTCTAAGCAATGCCATCAT
gi|4 : AAGGATGAAGTGAAGTTTCCTTATGTG-------------------------CTGGTCCC--TTT--TTACATTGACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTTTTTACATAAAC-GCCACAAA-GATTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTT-TATTGT-CATG--TGGA-ATGCTGAAAAATCGACAGATTTCTAAACCTCAT--ACCGGGCAATTTCCCGTCAA-GGTTTGTAATATCTTCATT-CGTCATGAAGTAATG---TAATAA-A-AGGAG--TGGGCGGGT-TAAAACAGAAT---GA---TAGACTGCA--TGCG--ATTTCCC--GTT----T-----GGTAAA--TAACCA--TAGA--AC----AAACGTCAA--TT-CCACA-CTATTTTAATTCGATGT----------ATATATA--TTCTAAT-TTGA-TTTAC-T-CTAAATATT-CACACAATTTAG-CA--CAAAGATA-TATCC-CT-TCTT-TCAAGA--ATATAAATGG-ATGCGAATGTAATTGTATTTTGATTGCGTGT-----TAACATGCCTGCAT-GTACGCCAGCATG----CATGTGT-TACATTT
gi|2 : ATGAAGTGCAGTCTCCATATGCGC-GGT-----------------------GGCCCTTTTTCATCG-----ACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTGC---ATAAAC-GCCACAAA-GAATGATTTCTGAAAA-TTTTGATAGTTCCCTTTGTTAT--TGT-CATG--TGGA-ATGGTGAAAAATCGACTGATTTCTAAA-TTCAT--ACCGGGCACTTT-TCGTCAA-GGTTTGTAA--TCTTCATT--TTCATGAAATAATGATA-AA------AGGAG--TGGGCGGGTCTA-AACAGAATAAAGAA--TAGACCGCA--TGCGATATTCTCC--GTTTGTA---------AA---TAAACA--TAGA--AC----AAACGTCAA-ATT-CCACA-CTA-TTTAATTC-ATGT----------GTATATATATTTTAAT-TTGAGTTTATATATTAAATATT-CACACAAGTTAG-CA--CAAA-ATA-CATCC-CTATCTT-TCAATA--ATATAAAT-GAATGCGA---------TATTTTG-TTGCATGTT---ATA-CATGCCTGCAT-GTACGCCAGCATC----T---------------TATA-ATAATATAT-TGTAATGTGT-AAAATTAATTTTGATGAATAATTTAAA-AATAAATACTAGTGGCATTTCACCTTGC-AAATGATGTAAAACTATCA-TTTTG--TTT--AGAAAAA--------CAG---------ATTTTNNNN-NNNNNNNN-NNNNNNNNNN-NNNN--NNNN-N-NNNNN-NNNNTGCGAGGG--GAG-C---GGAATGAACCAAAA---CGC-TTGGC---TAGCG-AA-TT--GTGCT-TTG--AAACTACACGTA------TATTTAAATAGT-TA-TACA-AATATCTAA---ATA-C-A--ATTTATCAAA----ACAGA--TTTGTGT-GTTGGTAAAT--AAATTATTATATTCGAA--GAC-----AC-TTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTGTG-TATTCGTCTT----ATAGAGGGCGAGAGATTCAAGGTAGGT--CGGTCGGAGTTC-AAATCTGGTTTCCATAATGGAGGT--GGGGCTAGTGAAATTTTTCTCATATTT-TTTTTT-AAAATAT-CGGCGATTTAAC-ATA--CGGGTATTGCTG---TACGAATTTTAAAAG-CTTTGATGATATTCAAACACAGCCTGAta
gi|3 : aTATAATAGGATAAGGTGA-GGGCGGGTCTA-AACAGAA------ATT---ACGAAGCATGCG--AATCGCCTCGTTTACATACATAGATAAATCAATACAGT-ACATCACTTGTAAAGGTCAA--TT--C-CACCTATTTTATCTCAATGTA----------TATATAT-TTTTAAT-TTCC-TATATATACTAAATATTGCACACAA-TT--TCAAACAAA-ATTATTTCCTCTATCGT-TCACGACTATATAAATTGGATGCGA---------TATTTTGA-TAAATGTT--AACACCATGCCTGCCTGGTACGCCAGCATGGGTATATGTGTCTACATTT-TAAACATAA-ATAGATGTGAAGTGT-CAAATT-ATTTTACTGGGTGA--TATATAACTGCTAGTAAT-GCATTTCACCTTGC--AATGA-TT-AAACAGTCATTTTGT--GTT--GGAAAAT------CTTAAATTTT----ATCTTCGGCTAG--GCCAGGGGTTTTTCGTGGTGCACTAC-C-CTGCTGCGCCTGT-GCGGGTGAGCCGCAGGAGTGGACGAAAACC-C-C-TTG-C---TAGCGCAATTTC--TGCT--TTGAAAACT-CAAG-A------AATTTAAATA-TA-GTTATAT-ATATCTTT---ATCTCAATCATTCATTCAAAG---TAGATTTTTAGTTGGTTGGTAAATACAGATTAGTGT-ATCG-AAGGGCTACTGACTTTTTTTa
gi|18 : tacTAGC-A--CAAA-ATA-CATCC-CTATCTT-TCAATA--ATATAAATGGAATGCGA---------Tttta
gi|8 : -TTTGTAGTTTGAAGAAAAAATTGAGT-TAGATTTTGATCATCTT-CGC---TAGCCA-AGGGTTT-CG-GT----CCAC-T-CCGCT-C-CCCATGG--G--GAG-C---GGAGTGGACCGAAA---C-CCTTGGC---TAGCG-AA-at
gi|8 : taatgtaaaagataattagtgcttgtttgactaatacatgtacatcatttgtatacattaaagtt----ATCTT-CGC---TAGCCA-AGGGTTT-CG-GT----CCAC-T-CCGCT-C-CCCATGG--G--GAG-C---GGAGTGGACCGAAA---C-CCTTGGC---TAGCG-AA-------GATGATCAAAATCTA-ACTCAATTTTTTCTTCAA-------ACTACAAAAACTTTAATGTATA-CAA--ATgatg
gi|12 : taatgtaaaagataattagtgcttgtttgactaatacatgtacatcTCTT-TGC---TAGACA-AGGGTTTTCT-GGT---CCGC-TGCTACT-C-CCTATAG-GA--GAGCA---GGAGTGGACTGAAATACC-C-TTGCCGCCTAGCG-AA-g
gi|12 : tggatgtttggttgcGCAA-GGGTATTTCA-GT----CCACTC-CTGCT-CTCCTATA--GG--GAGTA---GCAGCGGACCAGAAAACC-C-TTGTC---TAGCA-AA-gatg
gi|16 : tggatgtttggttgctcCGG--GAGT----GGAGTGGACCAAAAAC-C-C-TTGGC---TAGCG-AA-cgcctagcgaagatg
gi|15 : tcatcATGTA-TTCAAATCACGTGTG-TATC-GTCTT----ATA-GA-GCGAGAGATTCAAGGTAGGT--CGC--GGAGTTC-AAATCTGGTTTCCATAA-TGGAGTgaaacccttgtctagcgaagatgccactggttat
gi|7 : AGTTCAAA--CAGGTTTTCAGAAT----G-AAGGTTCTGGTGAAATTCTTGCTG-ATT-ATTTTTTTTTAATATC-AGCGAT---GCAATGTACGGCTATCGCTGT---ACGAAATTTAAAAGTTTTTAATAATATAC-AACACA-
gi|6 : tcgaatacactctaattaaagttcatgacggtgaggtcgtgtttatgtgctaaagcatttgaatcacgtgatataatatttgtgtagagcaagttacatgAATTT----AAGTTTTTAATAACATACAAACAgttt
gi|14 : gaAACCGTATG--GTCCATCGAATTT--ATGTTTCTTGGGTTATAAAA-GTGT-GGGCGGG-CTAAATGCTTATGAGAAATGCA-GCT----TGAGGAAACC-gttgagattatctaacagcacctgcttgtgcctatatatttccagatttgataagatttgggcgggaccaaatgcctttgaaaatttcagctaatgaggaaaccccaagcttatataccgtttgtggcgaatgtgtgcacgtgtaaaagtttaaaaattatagaagtataaatgtgaatgagttgaatcttgtaaattttaacatgaaaccaaat
gi|5 : TCCATCGAACTT--ATGTTTCTTGGGTTGTGAAA-GTGTGGCG-GGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAATCCTC-ATGC-TTGAACCTCAGACTT-ATATA-TTGTTTGTGGCGAATTTATATGCC--ATGTAGCA-TT---TAAATCA-TAAAAGTACAAATGTTG-ATGAACTGAATC-CTGTAAAT-----TTGAACTTGA-AAT-AAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|6 : gtaacgtTGATAAGA--TTT-GGGCGGGACCAAATGCCTTTGAA-AATTTCAGCT--AATGAGGAAACC-CCAAGCTT---------------ATATA-CCGTTTGTGGCGAA--TGTGTG-CACGTGTAAAAGTTTAAAAATT-A-TAGAAGTATAAATG-TGAATGAGTTGAATC-TTGTAAAT-----TTTAACATGAAACCAAAgttctcttcatcct
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TATACACATGTATATATTTCTTTATGCTTGTAAAGCATTAATATACCATGTTCGCTAACAAAGGGTTTTCGGTCCGAGGAGCAAAATGGACCAACATGTAAAAAAAAAACTTTGACTAGCGAAGATG
Unaligned ( gi|10 ): AAAAAAAAATCCTGATTTTATCTTTTCAGTTGATGTCATCCTCCTAAGTCAAGGGTTCTGATCCGCCCCGCTCCACATAAATGTGGAGCGGGTGGATAAGAAATTCTTGACTTGGGAAGATG
Unaligned ( gi|11 ): TAGTTAAATCATTGTAGTTTGATCATCTTTGCTAGCCAAGGGTGACGATGCACAATGTTTCTCTTTCACTCTGAAAAAGAAACACCATGTATCGTCACCCTTGGCTAGCGAAGATAT
Unaligned ( gi|13 ): AAAACTTAAATAGATTTACCGCATCTTCACCAGCCAAGGGTTAGATCCCCTCACCTCTAACCGGGGCGGATTGTAGACCCTCGGCAAGCGAAGACAC
Unaligned ( gi|17 ): CATCTTCGCTAGCCAAGGGTGACGTACACGGGTTTCTACTAACCACCGTGTATCGGGCACCCTGCTACGCGAAAGA
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 4444444444444444444444444 2222222222 1 1 1 33 11 444444 1 1 1 11 1 11 2 1 11 1 222222 11 1 222222222222 111 11 11 444444444444 11 11 444444444 22 1 1 44444444444 11 1 1 1 2 2222 11 333333333 3333333 1 333333333333 1 2 2 11 1 11 2222 2 22 111 1 11 11 333333333 111111111 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 111111111 555 333333 111 11 22 1 222222 333333 22222 33 1 1 77777777777 1 2 22 333 22 1 1 1 2222 111 1 1 1 111111 1 22 2 11 111 3333 1 444444444 1111 1 1 1 1 11 222222222222222 11 11 11 3333333 1 333 11 11 33333 2 1 22
lowQualScore : 1 1 5555555555555555555555555 1 7777777777 3 3 3 00 88 555555 3 3 1 7 6 7 7 3 88 3 1 1 6 88 6 1 0 3 3 99 77 3 0 7 3 000000 33 0 333333333333 6 555 33 1 33 111111111111 33 33 000000000 33 0 3 0 3 6 55555555555 33 0 0 3 3 0 0 0 4444 8 8 8 8 0 8 1 11 5 3 222222222 66 2 6666666 0 2 444444444444 0 1 3 3 88 0 1 44 7 4 0 0 55 1 7 2222 1 3 7 00 555 11 0 33 33 333333333 444444444 3 3 44 6 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 4 6666 4 666666666 555 111111 3 2 4 3 777 33 99 0 000000 0 1 222222 7 99999 6 00 0 4 0 4 33333333333 3 0 77 555 2 77 3 3 5 8888 0 6 7 666 0 0 3 0 777777 22 2 0 1 44 3 22 33 7 0 000 1 3333 3 3 4 3 2 2 3 666666 444444444 3 4444 0 0 2 0 2 3 0 33 3 2 1 7 555555555555555 44 44 0 0 6 55 1 7777777 1 6 3 0 444 55 44 33333 1 1 77 3 0 3 5 77 4
lowQualScore : . . ......................... . .......... . . . .. .. ...... . . . . . . . . .. . . . . .. . . . . . .. .. . . . . ...... .. . ............ . ... .. . .. ............ .. .. ......... .. . . . . . ........... .. . . . . . . . .... . . . . . . . .. . . ......... .. . ....... . . ............ . . . . .. . . .. . . . . .. . . .... . . . .. ... .. . .. .. ......... ......... . . .. . .......................................................................................... . .... . ......... ... ...... . . . . ... .. .. . ...... . . ...... . ..... . .. . . . . ........... . . .. ... . .. . . . .... . . . ... . . . . ...... .. . . . .. . .. .. . . ... . .... . . . . . . . ...... ......... . .... . . . . . . . .. . . . . ............... .. .. . . . .. . ....... . . . . ... .. .. ..... . . .. . . . . .. .
lowQualScore : 0 0 7777777777777777777777777 0 7777777777 3 3 3 77 33 777777 3 3 0 3 7 3 3 3 33 3 0 0 7 33 7 0 7 3 3 77 77 3 7 3 2 555555 88 0 555555555555 5 888 88 0 88 888888888888 88 88 000000000 88 0 2 0 2 5 88888888888 22 0 0 2 2 0 0 8 2222 0 0 0 0 8 0 0 00 0 8 000000000 55 0 5555555 0 5 888888888888 0 0 3 7 33 7 0 33 3 0 7 7 00 0 3 3333 0 3 3 77 777 77 0 88 88 000000000 222222222 1 1 22 2 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 0 8888 0 000000000 000 000000 2 5 2 2 555 88 00 0 000000 7 0 000000 3 77777 7 33 7 0 7 0 00000000000 3 0 55 000 5 55 3 3 0 3333 7 7 3 000 0 0 2 0 333333 00 0 7 0 33 7 00 33 3 7 000 0 0000 2 2 0 2 5 5 3 000000 333333333 2 8888 0 0 5 0 0 2 0 88 2 5 0 3 777777777777777 00 77 7 7 7 77 0 3333333 0 7 3 7 333 77 00 33333 0 0 77 0 0 0 0 55 0
consensus : NAAGGATGAAGTGAAGTCTCCATATGCGC--------------------G-GC-TGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT-C---ATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAA-ATATATGTAATGTGT-AAAATTAATTTTG-TGGATAAT-TAAATAAC-GATACTAGT-GCATTTCACCTTGC-AAATGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----C----ATCTT-C-GC--TA-GCCAAGGGTTT-----------TCGGN--T-CCGCT---CCGCT-C-CCCGTG---G-GG-GAGCC---GGAGTGGAC-C-------------G-AAA---C-CTTG--G-CTAGCG-A---------ATTNA-TGCT--TTGAAAACTACANGTATATTTAAA---TA--TA-CTACA-AATATCTAAATA-CAA--ATTTATCAAAAG--ATAGATTTTTAG-T-GTTGGTAAAT--AAATTA-TATA-TCGAA--GGC----GAC-TTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGTA-TTCAAATCACGTGTG-TATC-GTCTT----ATAGAGGGCGAGAGATTCAAGGTAGGTCGGTCGG-AGTTC-AAATCTGGTTTCCATAA-TGG-AGTAAGGTGCTGGTGAAATTTTTCCCG-ATT-ATTTTTTTAAAATATCCGGCGATTTAACAATGTACGGNTATCGCTG--TTACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA--TG-T-GTCCATCGAACT-T--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTA--AATTCA-TAAAAGTACAAATGT-GGATGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
Reference ( family-172 ) : NAAGGATGAAGTGNAGTCTCCNTATGCGC--------------------G-GTCTGGNCCCTTTTTCATCGCATTGACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTNCTACATAAAC-GCCACAAA-GANTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGNTGAAAAATCGACNGATTTCTAAACCTCATA--CCGGGCANTTTCCCGTCAAGG-TTTGTAATATCTTCATTCNT-CATGAAGTAATGATATAATAG---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCG--TGCGAT--TCNCC--GTTTGCAT-----GGTAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTG----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-CATCC-CTATCTT-TCAANA--ATATAAATGGAATGCGA---------TATTTTGATTGCGTGTT---ATA-CATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TANACATAATATANATGTGANGTGT-NAAATTAATTTTGNTGGGTGATTTANATAACNGNTANTAGTGGCATTTCACCTTGC-AAATGATNTAAAACNGTCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----T----ATCTT-C-GC--TA-GCCAAGGGTTT-----------TCGGT--T-CCACT---CCGCT-C-CCTATG---G-GG-GAGCC---GGAGTGGAC-C-------------G-AAA---C-CTTG--G-CTAGCG-A---------ATT---TGCT--TCGAAAACTACACGCATATTTAAA---TA--TA-CTACA-AATATCTAAATA-CAA--ATTCATCNAAAG--ACAGATTTTTGNNTGGTTGGTAAATACAGATTANTGTANTCGAAAGGGCTACTGAC-TTTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTGTG-TATCCGTCTT----ATAGGGGGCGAGAGATTCAAGGTAGGTCGNTCGG-AGTTC-AAATCTGGTTTCCATAA-TGG-GGTAAGGNNCTGGTGAAATTCTTNCCGTATTTATTTTTTTNNAATATCCGGCGATTTAGCAATGTACGGNTATCGCTG--TTACGAATTTTAAAAGTTTTTAATAATATACAAACACAGCCT-GANNNNNNAACCGTA--TG---GTCCATCGAACT-T--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAAACCCCANGCTTTGAACCTCAGACTT-ATATA-CCGTTTGTGGCGAATTTGTGTGCCACGTGTAGNAGTTTAANAANTCA-TAGAAGTACAAATGTTGAATGAGCTGAATC-CTGTAAAT-----TTNAACNTGAAANCAAAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|1 : AAGGATCAAGTGAAGTCTCCATATGCGCTGGCCCCTTTTTACATTACTGCGCCTGGGCCCGCTTTCATTACATT-ACTACATAACTCCAAAACTAACTACA--CTAAAGTTAGGAATTTTT------ACAAACAGCCACAAAAGAATGAGT-CTGAACACTTTTGATAGTTCCCTTTCTTATATTGTGCATGCATGGATATGCTGAAAAATCGACTGATTTCTAAACCTCATGAGCCGGG-AGTTTTC-GTCAAGGGTTTGTAA-GTCTTTATTCCTTCATGACATAATGATATAATAA---ACAGGAGGATGGACGGGTCTAGAACAGAAT---GAATCTA-GACCGCGCCTGCGAT--TTGCC--GTTTGTAT-----GATAAATTTAAACAATTAGAACA---------AACGTCAACGTTGCCACACCTATTTTAATTCGATGTAACTTAAATGATATATAT-TTTTGATATTGA-TTTATATACTAAATATT-CACACGA-TTAGCC--ACAGA-A-TAGTATCC-CTATCTCATCAAGA--ATATAAATGGAATTCGA---------TCTTTTGATTGCATGTCTGAATACCATGCCTGCAT-GTGCGGCAGCATG----TATG-GTATACATTTGTATA-ATAA-ATATATGTAATGTGTAAAAATTAATTTTG-TGGATAATATAAATCA---ATACTAGT-GCATTTCACC--GCAAAATGA-GTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-CAGACTT----T----ATCTTGT-GCAGTA-GCCAAGGTTTT-----------TCGGC--TGCCACC---CTGCT-CGCCTGTG---GCGG-GAGTC---GGAATGGAC-C-------------A-AAA---C-CTTG--A-CTAGCG-A---------ATTCAGTGGTGGTGAAAAACTACACGTATATTTAAATAGTA--TA-CTACAGAATATCTAAATA-CAA--ATTTATCAAGAGTCATAGA--TTTAGGT-GTT-GTAAAT--AAATTA-TATAATCGA---GAC-----AC-TTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGCCGGACAATGCACTTCAAATCACGTGTGTTATCGGTCCTTTTGATATGAGGCGAGAG-TTCACAGTATGT-AATGGGAAGTTCAAAATCTGGCTTTCCTAATTGG-AGTAAGGTGCT-ATGAAATTTTTCCCA-ATTTATTTTCTAAAAATATCCGGCGACTTAACAATAAGCGGTTAACGCTATTTTACAATTTTTAAAAGTTTTTAATGATATTCAAACACA-CCT-GATCCTGTAATCG-A--TGAT-GTCCATCGAATT-TTAGTGTTTCTTGGGTG-ATAAAAAGTGTGCGCGGG-CTTAATGCCTATGAG-AATGCAGGCTGTAATGAGGAAA-CCCAAGCTTTGAA-CTTAGACTTAATATAGTCGTTTGTGGCGAA-TTATACGTCATATGTAGCA--TTA--AATTCATTAAAAGTACAATTGT--GATGA--TGAAACATTGTAAGTGGTTATTTAACATGATAACAAAGAAAATGTATTTTTATTAAATATAGT-GGGGCCGTCTAAGCAATGCCA
gi|10 : aGATGT----C----ATCCT-C--C--TAAGTCAAGGGTTC-----------T--GA--T-CCGCC---CCGCT-C-CACATAAATG-TG-GAGC-----GGGTGGATAA-------------G-AAAT--T-CTTG--A-CTTGGG-A---------Atcat
gi|11 : aaaaaaaaatcctgattttatcttttcagttT----C----ATCTT-T-GC--TA-GCCAAGGGTgatg
gi|11 : tagttaaatcattgtagtttga----T----ATCTT-C-GC--TA-GCCAAGGGTgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcacccttggctagcgaagatat
gi|12 : tagttaaatcattgtagtttgatcatctttgctagccaagggtgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcTCTT-T-GC--TA-GACAAGGGTTT-----------TCTGG--T-CCGCTG--CTACT-C-CCTATA---G-GA-GAGCA---GGAGTGGAC-T-------------G-AAATACC-CTTGCCGCCTAGCG-A---------At
gi|13 : tggatgtttggttgcAA------A-TAGATTTACCGC----ATCTT-C-AC--CA-GCCAAGGGTT--------------AGA--T-CCCCT---CACCT-C-T--------------AACC---GGGGCGGAT-T-------------GTAGAC--C-CTCG--G-CAAGCG-A---------Agatg
gi|14 : aaaacttAACCGTA--TG---GTCCATCGAATT-T--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCTTATGAGAAATGCA-GC--T--TGAGGAAACCgacac
gi|15 : ATGTA-TTCAAATCACGTGTG-TATC-GTCTT----ATAGAG--CGAGAGATTCAAGGTAGGTCG--CGG-AGTTC-AAATCTGGTTTCCATAA-TGG-AGT
gi|16 : T----C----ATCTT-C-GC--TA-GCCAAGGGTTT-----------TTGG---T-CCACT---CCACT-C-CC----------G-GA--------------------------------AAC---C-CTTG--T-CTAGCG-A---------A
gi|17 : ----ATCTT-C-GC--TA-GCCAAGGGTgatgccactggttat
gi|18 : cTAGC---ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAATGGAATGCGA---------TATgacgtacacgggtttctactaaccaccgtgtatcgggcaccctgctacgcgaaaga
gi|2 : ATGAAGTGCAGTCTCCATATGCGC--------------------G-GT---GGCCCTTTTTCATCG-----ACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTGC---ATAAAC-GCCACAAA-GAATGATTTCTGAAAA-TTTTGATAGTTCCCTTTGTTAT--TGT-CATG--TGGA-ATGGTGAAAAATCGACTGATTTCTAAAT-TCATA--CCGGGCACTTTTC-GTCAAGG-TTTGTAAT--CTTCATT-TT-CATGAAATAATGATA-----A---A-AGGAG--TGGGCGGGTCTA-AACAGAATAAAGAAT--A-GACCGCA--TGCGATATTCTCC--GTTTG----------TAAAT--AAACA--TAGAACA---------AACGTCAAA-TT-CCACAC-TA-TTTAATTC-ATGTG----------TATATATATTTTAAT-TTGAGTTTATATATTAAATATT-CACACAAGTTAG-C--ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAAT-GAATGCGA---------TATTTTG-TTGCATGTT---ATA-CATGCCTGCAT-GTACGCCAG------------------CATCT-TATA-ATAATATAT-TGTAATGTGT-AAAATTAATTTTGATGAATAATTTAAA-AATAAATACTAGTGGCATTTCACCTTGC-AAATGATGTAAAACTATCA-TTTTG--TTT--AGAAAAA------C--AGATTT----T----NNNNN-N-NN--NN-NNNNNNNNNNN-----------NNNNN--N-NNNNN---NNNNN-N-NNTGCGA--G-GG-GAG-C---GGAATGAAC-C-------------A-AAA---CGCTTG--G-CTAGCG-A---------ATTG--TGCT--TTG-AAACTACACGTATATTTAAA---TAGTTA--TACA-AATATCTAAATA-C-A--ATTTATCAAA----ACAGATTTGTGT---GTTGGTAAAT--AAATTATTATATTCGAA---------GACACTTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTGTG-TATTCGTCTT----ATAGAGGGCGAGAGATTCAAGGTAGGTCGGTCGG-AGTTC-AAATCTGGTTTCCATAA-TGGAGGT--GGGGCTAGTGAAATTTTTCTCATATT--TTTTTTTAAAATAT-CGGCGATTTAACA---TACGGGTATTGCTG---TACGAATTTTAAAAG-CTTTGATGATATTCAAACACAGCCT-GA
gi|3 : aTATAATAGGATA-AGGTG--AGGGCGGGTCTA-AACAGAA-----ATT--ACGAA-GCA--TGCGAA--TCGCCTCGTTTACATACATAGATAAAT--CAATA--CAGTACATCACTTGTAAAGGTCAA--TT-CCAC-C-TATTTTATCTCAATGTA----------TATATAT-TTTTAAT-TTCC-TATATATACTAAATATTGCACACAA-TT--TCAAACAAA-ATTA-TTTCCTCTATCGT-TCACGACTATATAAATTGGATGCGA---------TATTTTGA-TAAATGTTA--ACACCATGCCTGCCTGGTACGCCAGCATGGGTATATGTGTCTACATTT-TAAACATAA-ATAGATGTGAAGTGT-CAAATT-ATTTTACTGGGTGA--TATATAACTGCTAGTAAT-GCATTTCACCTTGC--AATGATT--AAACAGTCATTTTGT--GTT--GGAAAAT------CTTAAATTT----T----ATCTT-CGGC--TAGGCCAGGGGTTT-----------TTCGTGGT-GCACTACCCTGCTGCGCCTGTGC--G-GGTGAGCCGCAGGAGTGGA--C-------------G-AAAAC-C-CCTT--G-CTAGCGCA---------ATTTC-TGCT--TTGAAAACT-CAAGAA-ATTTAAA---TA--TAGTTATA-TATATCTTTATCTCAATCATTCATTCAAAG---TAGATTTTTAGTTGGTTGGTAAATACAGATTAGTGTA-TCG-AAGGGCTACTGAC-TTTTTTTa
gi|4 : tacAAGGATGAAGTGAAGTTTCCTTATGTGC-------------------------TGGTCCCTTTTT----ACATTGACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTTTTTACATAAAC-GCCACAAA-GATTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTT-TATTGT-CATG--TGGA-ATGCTGAAAAATCGACAGATTTCTAAACCTCATA--CCGGGCAATTTCCCGTCAAGG-TTTGTAATATCTTCATTCGT-CATGAAGTAATG---TAATAA---A-AGGAG--TGGGCGGGTTAA-AACAGAAT---G-AT--A-GACTGCA--TGCGAT--TTCCC--GTT----T-----GGTAAAT--AACCA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATA--TTCTAAT-TTGA-TTTAC-T-CTAAATATT-CACACAATTTAG-C--ACAAAGA-TA-TATCC-CT-TCTT-TCAAGA--ATATAAATGG-ATGCGAATGTAATTGTATTTTGATTGCGTGTT---A-A-CATGCCTGCAT-GTACGCCAGCATG----CATGTGT-TACATTT-TAttta
gi|5 : TCCATCGAACT-T--ATGTTTCTTGGGTT-GT-GAAAGTGTGGCGGGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAATCCTCATGC-TTGAACCTCAGACTT-ATATA-TTGTTTGTGGCGAATTTATATGCCA--TGTAGCA-TTT---AAATCA-TAAAAGTACAAATGTTG-ATGAACTGAATC-CTGTAAAT-----TTGAACTTGAAAT--AAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|6 : gtaacgtAATTT---AAGTTTTTAATAACATACAAACA--GTTGAGATTATCTAACAGCACCTGCTTGTGC------CTAT--ATATTTCCAGATTTGAT-AAGATT-TGGGCGGGACCAAATGCCTTTGAAAATTTCA-GC--TAATGAGGAAACCCCAAGCTT---------------ATATA-CCGTTTGTGGCGAAT--GTGTGC-ACGTGTAAAAGTTTAAAAATT-A-TAGAAGTATAAATGT-GAATGAGTTGAATC-TTGTAAAT-----TTTAACATGAAACCAAAgttctcttcatcct
gi|7 : gaG-AGTTC-AAA-CAGGTTTTCAGAA-TG-----AAGGTTCTGGTGAAATTCTTGCTG-ATT-ATTTTTTTTTAATATC-AGCGAT---GCAATGTACGGCTATCGCTG--T-ACGAAATTTAAAAGTTTTTAATAATATAC-AACACAGt
gi|8 : tcgaatacactctaattaaagttcatgacggtgaggtcgtgtttatgtgctaaagcatttgaatcacgtgatataatatttgtgtagagcaagttacat-TTTGTAGTTTGAAGAAAAAATTGAGT-TAGATTT----TGATCATCTT-C-GC--TA-GCCAAGGG-TT-----------TCGG---T-CCACT---CCGCT-C-CCCAT----G-GG-GAG-C---GGAGTGGAC-C-------------G-AAAC--C-CTTG--G-CTAGCG-A---------Attt
gi|9 : taatgtaaaagataattagtgcttgtttgactaatacatgtacatcatttgtatacattaaagtt----ATCTT-C-GC--TA-GTCAAAGTTTTTTTTTTACATGTTGG---T-CCATT---TTGCT-C-CT------------------------CGGAC-C-------------G-AAAAC-C-CTTT--G-TTAGCG-AACATGGTATATTAA-TGCT--T-------TACAAGCATAAAGAAA---TA--TA--TACA-gatg
gi|9 : tatacaca----ATGTT-C-GC--TA-ACAAAGGGTTT-----------TCGGT--C-C------------------------G-AG-GAG-C---AAAATGGAC-CAACATGTAAAAAAA-AAA---C-TTTG--A-CTAGCG-A---------Ag
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 44444444444444444444444444 2222222222 1 1 1 11 11 44444 1 1 1 11 1 11 1 1 11 1 11111 11 1 222222222222 11 11 11 4444444444 11 11 444444444 22 1 1 4444444444 11 1 1 1 2 2222 11 333333333 3333333 1 333333333333 1 1 1 1 2 333333333333333 1 1 111 1 11 1 11 11 333333333 1111 22222222222222 111 5555555555555555555555555 222 22222222222222 222222 4444444 1 222222 33333 33333333 11 2 2 55555555 1 11 222 11 1 1 1 1111 222222 11 4444444 1 1 1111 1 1111 2 111 444 1 444444444444 11 1 1 1 1 11 222222222222222 1 11 11 22 2222222 1 11 1 33333 1 1 11
lowQualScore : 22222222222222222222222222 1111111111 3 3 3 88 88 99999 3 3 7 6 7 7 3 88 3 6 88 6 1 3 3 99 77 3 7 3 88888 33 0 333333333333 6 33 33 2 33 1111111111 0 33 33 000000000 33 0 3 0 3 6 3333333333 33 0 0 3 3 0 0 0 4444 8 8 8 8 0 8 11 5 3 222222222 66 1111111 0 2 444444444444 0 3 7 3 3 7 6 777777777777777 0 0 777 3 0 2 88 3 7 0 33 33 333333333 7777 3 3 44 6 3 99999999999999 4 2 222 1 4 0000000000000000000000000 66 777 888 4 6666 4 99999999999999 333333 3 1 7 2222222 0 000000 11111 44444444 6 88 6 6 7 22222222 7 5 88 111 1 88 0 0 0 1111 222222 55 9 2 3333333 0 3 0 2 0000 2 8888 7 3 7 000 1 222 3 3 1 3 2 2 3 1 1 333333333333 2 4 33 0 0 2 0 3 0 33 3 2 7 444444444444444 3 7 00 55 00 7777777 5 55 3 33333 77 1 5 1 5 88 1
lowQualScore : .......................... .......... . . . .. .. ..... . . . . . . . .. . . .. . . . . .. .. . . . ..... .. . ............ . .. .. . .. .......... . .. .. ......... .. . . . . . .......... .. . . . . . . . .... . . . . . . .. . . ......... .. ....... . . ............ . . . . . . . ............... . . ... . . . .. . . . .. .. ......... .... . . .. . . .............. . . ... . . ......................... .. ... ... . .... . .............. ...... . . . ....... . ...... ..... ........ . .. . . . ........ . . .. ... . .. . . . .... ...... .. . . ....... . . . . .... . .... . . . ... . ... . . . . . . . . . ............ . . .. . . . . . . .. . . . ............... . . .. .. .. ....... . .. . ..... .. . . . . .. .
lowQualScore : 77777777777777777777777777 3333333333 3 3 3 33 33 00000 3 3 3 7 3 3 3 33 3 7 33 7 0 3 3 33 77 3 3 2 55555 88 0 555555555555 5 88 88 5 88 2222222222 8 88 88 000000000 88 0 2 0 2 5 8888888888 22 0 0 2 2 0 0 8 2222 0 0 0 0 8 0 00 0 8 000000000 55 5555555 0 5 888888888888 0 3 3 3 3 3 7 777777777777777 0 0 000 2 0 5 22 2 0 0 88 88 000000000 0000 3 3 66 7 3 22222222222222 4 9 222 1 4 9999999999999999999999999 11 444 999 4 9999 4 00000000000000 555555 2 0 0 2222222 0 000000 33333 33333333 7 33 7 7 3 77777777 3 5 55 000 0 00 0 0 0 5555 222222 22 2 5 0000000 0 2 0 5 6666 0 3333 3 3 3 000 0 000 2 2 0 2 5 5 3 0 0 000000000000 5 2 88 0 0 5 0 2 0 88 2 5 3 000000000000000 3 3 33 77 77 7777777 0 77 3 33333 77 0 5 0 0 55 0
consensus : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTT-TCGTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AA---------TTNA-TGCT--TTGAAAACTACANGTATATTTAAATAGT-TA-CTACA-AATATCTAAATA-CAA--ATTTATCAAAAG--ATAGATTT-TAG-T--GTTGGTAAAT--AAATTA-TATA-TCGAAGA-----C-ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATGT-GATGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
Reference ( family-172 ) : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTT-TCGTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GNT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AA---------TTNA-TGCT--TTGAAAACTACANGTATATTTAAATA---TA-CTACA-AATATCTAAATA-CAA--ATTTATCAAAAG--ATAGATTTTTAG-T--GTTGGTAAAT--AAATTA-TATA-TCGAAGG-----CGACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGTA-TTCAAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTAGGT--CGGTCGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATATCCGGCGATTTAACAATGTACGGNTATCGCTG--TTACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAACTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATGTGGATGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
gi|1 : AAGGATCAAGTGAAGTCTCCATATGCGCTGGCCCCTTTTTACATTACTGCGCCTGGGCCCGCTTTCATTACATT-ACTACATAACTCCAAAACTAACTACA--CTAAAGTTAGGAATTTTT------ACAAACAGCCACAAAAGAATGAGT-CTGAACACTTTTGATAGTTCCCTTTCTTATATTGTGCATGCATGGATATGCTGAAAAATCGACTGATTTCTAAACCTCATGAGCCGGG-AGTTT-TCGTCAAGGGTTTGTAA-GTCTTTATTCCTTCATGACATAATGATATAATAA---ACAGGAGGATGGACGGGTCTAGAACAGAAT---GAATCTA-GACCGCGCCTGCGAT--TTGCC--GTTTGTAT-----GATAAATTTAAACAATTAGAACA---------AACGTCAACGTTGCCACACCTATTTTAATTCGATGTAACTTAAATGATATATAT-TTTTGATATTGA-TTTATATACTAAATATT-CACACGA-TTAGCC--ACAGA-A-TAGTATCC-CTATCTCATCAAGA--ATATAAATGGAATTCGA---------TCTTTTGATTGCATGTCTGAATACCATGCCTGCAT-GTGCGGCAGCATG----TATG-GTATACATTTGTATA-ATAAATATA-TGTAATGTGTAAAAATTAATTTTG-TGGATAATAT---AAAT--C-AATACTAGT-GCATTT-CACC----GCAAAATGA-GTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-CAGACTT----TATCTTGT-GCAGTA-GCCAAGGT-TTTTC--------G--GCTGCCACC---CTGCT-CGC--CTGTG---GCGG-GAGTC---GGA--ATGGAC-CAAAA---C-CTTG--A-CTAGCG-AA---------TTCAGTGGTGGTGAAAAACTACACGTATATTTAAATAGTATA-CTACAGAATATCTAAATA-CAA--ATTTATCAAGAGTCATAGATTT--AGGT--GTTG-TAAAT--AAATTA-TATAATCGA-GA-----C-ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGCCGGACAATGCACTTCAAATCACGTG-TGTTA-TCGGTCC-TTTTGATATGAGGCGAGAG-TTCACAGTATGTAATGG--GAAGTTCAAAATCTGGCTTTCCTAATTGGA-GTAAGGTGCT-ATGAAATTTTTCCCA-ATTTATTTTCTAAAAATATCCGGCGACTTAACAATAAGCGGTTAACGCTATTTTACAATTTTTAAAAGTTTTTAATGATATTCAAACACA-CCT-GATCCTGTAATCG-A------TGATGTCCATCGAATTTTAGTGTTTCTTGGGTG-ATAAAAAGTGTGCGCGGG-CTTAATGCCTATGAG-AATGCAGGCTGTAATGAGGAAA-CCCAAGCTTTGAA-CTTAGACTTAATATAGTCGTTTGTGGCGAA-TTATACGTCATATGTAGCA--TTAAA--TTCATTAAAAGTACAATTGT-GATGA--TGAAACATTGTAAGTGGTTATTTAACATGATAACAAAGAAAATGTATTTTTATTAAATATAGT-GGGGCCGTCTAAGCAATGCCA
gi|10 : aGATGT----CATCCT-C--C--TAAGTCAAGGG-TTCT------------GAT-CCGCC---CCGCT-C-C--ACATAAATG-TG-GAGC-----GG--GTGGATAAGAAAT--T-CTTG--A-CTTGGG-AA---------tcat
gi|11 : aaaaaaaaatcctgattttatcttttcagttT----CATCTT-T-GC--TA-GCCAAGGG-Tgatg
gi|11 : tagttaaatcattgtagtttgaATCTT-C-GC--TA-GCCAAGGG-Tgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcacccttggctagcgaagatat
gi|12 : tagttaaatcattgtagtttgatcatctttgctagccaagggtgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcTCTT-T-GC--TA-GACAAGGG-TTTTC--------T--GGT-CCGCTG--CTACT-C-C--CTATA---G-GA-GAGCA---GGA--GTGGAC-TGAAATACC-CTTGCCGCCTAGCG-AA---------at
gi|13 : tggatgtttggttgcAA------A-TAGATTTACCGCATCTT-C-AC--CA-GCCAAGGG-TT-----------A--GAT-CCCCT---CACCT-C-TAACCG-G---G-G------C---GGATTGTAGAC---------C-CTCG--G-CAAGCG-AA---------gatg
gi|14 : aaaacttAACCGTA------TG--GTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCTTATGAGAAATGCA-GC--T--TGAGGAAACCgacac
gi|15 : ATGTA-TTCAAATCACGTG-TG-TA-TC-GTCT-T----ATAGA--GCGAGAGATTCAAGGTAGGT--CG--CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GT
gi|16 : T----CATCTT-C-GC--TA-GCCAAGGG-TTTTT--------G--G-T-CCACT---CCACT-C-C--C----------G-GA--------------------AAC---C-CTTG--T-CTAGCG-AA-----------GA-TGC
gi|17 : ----CATCTT-C-GC--TA-GCCAAGGG-Tcactggttat
gi|18 : TAGC---ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAATGGAATGCGA---------TATgacgtacacgggtttctactaaccaccgtgtatcgggcaccctgctacgcgaaaga
gi|2 : ATGAAGTGCAGTCTCCATATGCGC-GG---------------------T--GGCCCTTTTTCATCG-----ACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTG---CATAAAC-GCCACAAA-GAATGATTTCTGAAAA-TTTTGATAGTTCCCTTTGTTAT--TGT-CATG--TGGA-ATGGTGAAAAATCGACTGATTTCTAAAT-TCATA--CCGGGCACTTT-TCGTCAAGG-TTTGTAAT--CTTCATT-TT-CATGAAATAATGATA-----A---A-AGGAG--TGGGCGGGTCTA-AACAGAATAAAGAAT--A-GACCGCA--TGCGATATTCTCC--GTTTG----------TAAAT--AAACA--TAGAACA---------AACGTCAAA-TT-CCACAC-TA-TTTAATTC-ATGTG----------TATATATATTTTAAT-TTGAGTTTATATATTAAATATT-CACACAAGTTAG-C--ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAAT-GAATGCGA---------TATTTTG-TTGCATGTT---ATA-CATGCCTGCAT-GTACGCCAG------------------CATCT-TATA-AT-AATATATTGTAATGTGTAAAA-TTAATTTTGATGAATAAT-TTAAAAATAA---ATACTAGTGGCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTTG--TTT--AGAAAAA------C--AGATTT----TNNNNN-N-NN--NN-NNNNNNNN-NNNNN--------N--NNN-NNNNN---NNNNN-N-N--NTGCGA--G-GG-GAG-C---GGA--ATGAAC-CAAAA---CGCTTG--G-CTAGCG-AA---------TTG--TGCT--TTG-AAACTACACGTATATTTAAATAGT-TA--TACA-AATATCTAAATA-C-A--ATTTATCAAA----ACAGATTTGT-G-T--GTTGGTAAAT--AAATTATTATATTCGAAGA-----C-AC-TTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTG-TG-TATTC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTAGGT--CGGTCGGAGTTC-AAATCTGGTTTCCATAA-TGGAGGT--GGGGCTAGTGAAATTTTTCTCATA-TT-TTTTTTTAAAATAT-CGGCGATTTAACA---TACGGGTATTGCTG---TACGAATTTTAAAAG-CTTTGATGATATTCAAACACAGCCT-GA
gi|3 : aTATAATAGGATA-AGGTG--AGGGCGGGTCTA-AACAGAA-----ATT--ACGAA-GCA--TGCGAA--TCGCCTCGTTTACATACATAGATAAAT--CAATA--CAGTACATCACTTGTAAAGGTCAA--TT-CCAC-C-TATTTTATCTCAATGTA----------TATATAT-TTTTAAT-TTCC-TATATATACTAAATATTGCACACAA-TT--TCAAACAAA-ATTA-TTTCCTCTATCGT-TCACGACTATATAAATTGGATGCGA---------TATTTTGA-TAAATGTTA--ACACCATGCCTGCCTGGTACGCCAGCATGGGTATATGTGTCTACATTT-TAAACATAAATAGA-TGTGAAGTGTCAAA-TT-ATTTTACTGGGTGA--T---ATATAACTGCTAGTAAT-GCATTT-CACC--TTGC-AA-TGAT-T-AAACAGTCATTTTGT--GTT--GGAAAAT------CTTAAATTT----TATCTT-CGGC--TAGGCCAGGGGTTTTTC--------GT-GGT-GCACTACCCTGCTGCGC--CTGTGC--G-GGTGAGCCGCAGGA--GTGGA--CGAAAAC-C-CCTT--G-CTAGCGCAA---------TTTC-TGCT--TTGAAAACT-CAAG-AAATTTAAATA---TAGTTATA-TATATCTTTATCTCAATCATTCATTCAAAG---TAGATTTTTAG-TTGGTTGGTAAATACAGATTAGTGTA-TCGAAGGGCTACTGACTTTTTTTa
gi|4 : tacAAGGATGAAGTGAAGTTTCCTTATGTGC-------------------------TGGTCCCTTTTT----ACATTGACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTTTTTACATAAAC-GCCACAAA-GATTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTT-TATTGT-CATG--TGGA-ATGCTGAAAAATCGACAGATTTCTAAACCTCATA--CCGGGCAATTTCCCGTCAAGG-TTTGTAATATCTTCATTCGT-CATGAAGTAATG---TAATAA---A-AGGAG--TGGGCGGGTTAA-AACAGAAT---G-AT--A-GACTGCA--TGCGAT--TTCCC--GTT----T-----GGTAAAT--AACCA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATA--TTCTAAT-TTGA-TTTAC-T-CTAAATATT-CACACAATTTAG-C--ACAAAGA-TA-TATCC-CT-TCTT-TCAAGA--ATATAAATGG-ATGCGAATGTAATTGTATTTTGATTGCGTGTT---A-A-CATGCCTGCAT-GTACGCCAGCATG----CATGTGT-TACATTT-TAttta
gi|5 : TCCATCGAACTT--ATGTTTCTTGGGTT-GT-GAAAGTGTGGCGGGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAATCCTCATGC-TTGAACCTCAGACTT-ATATA-TTGTTTGTGGCGAATTTATATGCCA--TGTAGCA-TTTAAA---TCA-TAAAAGTACAAATGTTGATGAACTGAATC-CTGTAAAT-----TTGAACTTGAAAT--AAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|6 : gtaacgtAATTT---AAGTTTTTAATAACATACAAACA--GTTGAGATTATCTAACAGCACCTGCTTG-TGCCTAT---------ATATTTCCAGATTTGAT-AAGATT-TGGGCGGGACCAAATGCCTTTGAAAATTTCA-GC--TAATGAGGAAACCCCAAGCTT---------------ATATA-CCGTTTGTGGCGAATGTGTGC---ACGTGTAAAAGTTTAAAAATT-A-TAGAAGTATAAATGTGAATGAGTTGAATC-TTGTAAAT-----TTTAACATGAAACCAAAgttctcttcatcct
gi|7 : gaAAAGCA-TTTGAATCACGTGATA-TA-AT-ATTTGT----GTAGAG-----------CAAGTTACAT--------GAGTTC-AAA-CAGGTTTTCAGAA-TG-----AAGGTTCTGGTGAAATTCTTGCTG-A-TTATTTTTTTTTAATAT-CAGCGAT---GCAATGTACGGCTATCGCTG---TACGAAATTTAAAAGTTTTTAATAATATAC-AACACAGt
gi|8 : tcgaatacactctaattaaagttcatgacggtgaggtcgtgtttatgtgctACTAAT-ACATGTACATCATTTGTATA-C-AT-TAAAGTT-----TTTGTAGTTTGAAGAAAAAATTGAGT-TAGATTTTGATCATCTT-C-GC--TA-GCCAAGGG--TTTC--------G--G-T-CCACT---CCGCT-C-C--CCAT----G-GG-GAG-C---GGA--GTGGAC-CGAAAC--C-CTTG--G-CTAGCG-AA---------ttt
gi|9 : taatgtaaaagataattagtgcttgtttg----CATCTT-C-GC--TA-GTCAAAGT-TTTTTTTTTACATGTTGGT-CCATT---TTGCT-C-C--TCG--------------------------GAC-CGAAAAC-C-CTTT--G-TTAGCG-AACATGGTATATTAA-TGCT--T-------TACAAGCATAAAGAAATA---TA--TACA-gatg
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 44444444444444444444444444 2222222222 1 1 1 11 11 44444 1 1 1 11 1 11 1 1 11 1 11111 11 1 222222222222 11 11 11 5555555555 11 11 444444444 22 1 1 4444444444 11 1 1 1 2 2222 11 333333333 3333333 1 333333333333 1 1 1 1 2 333333333333333 1 1 111 1 11 1 11 11 333333333 1111 444444444444 111 5555555555555555555555555 222 222222222222222 11 1 11 1 2 3333333 2 33333 1 11 11 11 2 111 2222 11 1 11 222 11 1 1 1 1111 222222 11 4444444 1 1 1111 1 1111 1 111 222 1 444444444444 11 1 1 1 1 11 222222222222222 1 11 11 22 2222222 1 1 11 1 33333 1 1 11
lowQualScore : 22222222222222222222222222 1111111111 3 3 3 88 88 99999 3 3 7 6 7 7 3 88 3 6 88 6 1 3 3 99 77 3 7 3 88888 33 0 333333333333 6 33 33 2 33 3333333333 33 33 000000000 33 0 3 0 3 6 3333333333 33 0 0 3 3 0 0 0 4444 8 8 8 8 0 8 11 5 3 222222222 66 1111111 0 2 444444444444 0 3 7 3 3 7 6 777777777777777 0 0 777 3 0 2 88 3 7 0 33 33 333333333 7777 3 3 44 6 3 222222222222 4 2 222 1 4 0000000000000000000000000 66 777 888 4 6666 4 000000000000000 33 9 0 3 1 9 33 3 3 2222222 7 3 11111 3 22 88 6 88 6 777 7 8888 88 7 5 88 111 1 88 0 2 0 0 1111 222222 55 9 1 4444444 0 3 0 2 0000 2 8888 7 3 7 000 1 333 3 3 1 3 2 2 3 1 1 333333333333 2 0 33 0 0 2 0 3 0 33 3 2 7 444444444444444 3 7 00 55 00 7777777 3 3 55 3 33333 77 1 5 1 5 88 1
lowQualScore : .......................... .......... . . . .. .. ..... . . . . . . . .. . . .. . . . . .. .. . . . ..... .. . ............ . .. .. . .. .......... .. .. ......... .. . . . . . .......... .. . . . . . . . .... . . . . . . .. . . ......... .. ....... . . ............ . . . . . . . ............... . . ... . . . .. . . . .. .. ......... .... . . .. . . ............ . . ... . . ......................... .. ... ... . .... . ............... .. . . . . . .. . . ....... . . ..... . .. .. . .. . ... . .... .. . . .. ... . .. . . . . .... ...... .. . . ....... . . . . .... . .... . . . ... . ... . . . . . . . . . ............ . . .. . . . . . . .. . . . ............... . . .. .. .. ....... . . .. . ..... .. . . . . .. .
lowQualScore : 77777777777777777777777777 3333333333 3 3 3 33 33 00000 3 3 3 7 3 3 3 33 3 7 33 7 0 3 3 33 77 3 3 2 55555 88 0 555555555555 5 88 88 5 88 2222222222 88 88 000000000 88 0 2 0 2 5 8888888888 22 0 0 2 2 0 0 8 2222 0 0 0 0 8 0 00 0 8 000000000 55 5555555 0 5 888888888888 0 3 3 3 3 3 7 777777777777777 0 0 000 2 0 5 22 2 0 0 88 88 000000000 0000 3 3 66 7 3 222222222222 4 9 222 1 4 9999999999999999999999999 11 444 999 4 9999 4 000000000000000 88 2 0 2 0 8 88 3 3 3333333 3 7 33333 3 33 33 7 33 7 777 3 3333 33 3 5 55 000 0 00 0 0 0 0 5555 222222 22 2 0 0000000 0 2 0 5 6666 0 3333 3 3 3 000 0 333 2 2 0 2 5 5 3 0 0 000000000000 5 8 88 0 0 5 0 2 0 88 2 5 3 000000000000000 3 3 33 77 77 7777777 3 3 77 3 33333 77 0 5 0 0 55 0
consensus : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-A---------ATTNA-TGCT--TTGAAAAC-TACACGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATAC-AATTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
Reference ( family-172 ) : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-A---------ATTNA-TGCT--TTGAAAAC-TACANGTATATTTAA--ATAGT-TACTACA-AA----TATCTAAATACAAATTTATCAAAAG--ATAGA-TTTTAGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
gi|1 : AAGGATCAAGTGAAGTCTCCATATGCGCTGGCCCCTTTTTACATTACTGCGCCTGGGCCCGCTTTCATTACATT-ACTACATAACTCCAAAACTAACTACA--CTAAAGTTAGGAATTTTT------ACAAACAGCCACAAAAGAATGAGT-CTGAACACTTTTGATAGTTCCCTTTCTTATATTGTGCATGCATGGATATGCTGAAAAATCGACTGATTTCTAAACCTCATGAGCCGGG-AGTTTTC-GTCAAGGGTTTGTAA-GTCTTTATTCCTTCATGACATAATGATATAATAA---ACAGGAGGATGGACGGGTCTAGAACAGAAT---GAATCTA-GACCGCGCCTGCGAT--TTGCC--GTTTGTAT-----GATAAATTTAAACAATTAGAACA---------AACGTCAACGTTGCCACACCTATTTTAATTCGATGTAACTTAAATGATATATAT-TTTTGATATTGA-TTTATATACTAAATATT-CACACGA-TTAGCC--ACAGA-A-TAGTATCC-CTATCTCATCAAGA--ATATAAATGGAATTCGA---------TCTTTTGATTGCATGTCTGAATACCATGCCTGCAT-GTGCGGCAGCATG----TATG-GTATACATTTGTATA-ATAAATATA-TGTAATGTGTAAAAATTAATTTTG-TGGATAATAT---AAAT--C-AATACTAGT-GCATTT-CACC----GCAAAATGA-GTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-CAGACTT----TATCTTGT-GCAGTA-GCCAAGGT-TTTTC--------G--GCTGCCACC---CTGCT-CGC--CTGTG---GCGG-GAGTC---GGA--ATGGAC-CAAAA---C-CTTG--A-CTAGCG-A---------ATTCAGTGGTGGTGAAAAAC-TACACGTATATTTAA--ATAGTATACTACAGAA----TATCTAAATACAAATTTATCAAGAGTCATAGA-TTTAGGT--GTTG-TAAAT--AAATTA-TATAA-TCG-AG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGCCGGACAATGCACTTCAAATCACGTG-TGTTA-TCGGTCC-TTTTGATATGAGGCGAGAG-TTCACAGTATGTAATGG--GAAGTTCAAAATCTGGCTTTCCTAATTGGA-GTAAGGTGCT-ATGAAATTTTTCCCA-ATTTATTTTCTAAAAATATCCGGCGACTTAACAATAAGCGGTTAACGCTATTTTACAATTTTTAAAAGTTTTTAATGATATTCAAACACA-CCT-GATCCTGTAATCG-A------TGATGTCCATCGAATTTTAGTGTTTCTTGGGTG-ATAAAAAGTGTGCGCGGG-CTTAATGCCTATGAG-AATGCAGGCTGTAATGAGGAAA-CCCAAGCTTTGAA-CTTAGACTTAATATAGTCGTTTGTGGCGAA-TTATACGTCATATGTAGCA--TTAAA--TTCATTAAAAGTACAATTG-TGA-TGA--TGAAACATTGTAAGTGGTTATTTAACATGATAACAAAGAAAATGTATTTTTATTAAATATAGT-GGGGCCGTCTAAGCAATGCCA
gi|10 : aGATGT----CATCCT-C--C--TAAGTCAAGGG-TTCT------------GAT-CCGCC---CCGCT-C-C--ACATAAATG-TG-GAGC-----GG--GTGGATAAGAAAT--T-CTTG--A-CTTGGG-A---------Atcat
gi|11 : aaaaaaaaatcctgattttatcttttcagttT----CATCTT-T-GC--TA-GCCAAGGG-Tgatg
gi|11 : tagttaaatcattgtagtttgaATCTT-C-GC--TA-GCCAAGGG-Tgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcacccttggctagcgaagatat
gi|12 : tagttaaatcattgtagtttgatcatctttgctagccaagggtgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcTCTT-T-GC--TA-GACAAGGG-TTTTC--------T--GGT-CCGCTG--CTACT-C-C--CTATA---G-GA-GAGCA---GGA--GTGGAC-TGAAATACC-CTTGCCGCCTAGCG-A---------Aat
gi|13 : tggatgtttggttgcAA------A-TAGATTTACCGCATCTT-C-AC--CA-GCCAAGGG-TT-----------A--GAT-CCCCT---CACCT-C-TAACCG-G---G-G------C---GGATTGTAGAC---------C-CTCG--G-CAAGCG-A---------Agatg
gi|14 : aaaacttAACCGTA------TG--GTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCTTATGAGAAATGCA-GC--T--TGAGGAAACCgacac
gi|15 : ATGTA-TTCAAATCACGTG-TG-TA-TC-GTCT-T----ATAGA--GCGAGAGATTCAAGGTAGGT--C-G-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GT
gi|16 : T----CATCTT-C-GC--TA-GCCAAGGG-TTTTT-----------GGT-CCACT---CCACT-C-C--C----------G-GA--------------------AAC---C-CTTG--T-CTAGCG-A---------A--GA-TGC
gi|17 : ----CATCTT-C-GC--TA-GCCAAGGG-Tcactggttat
gi|18 : TAGC---ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAATGGAATGCGA---------TATgacgtacacgggtttctactaaccaccgtgtatcgggcaccctgctacgcgaaaga
gi|2 : ATGAAGTGCAGTCTCCATATGCGC-GG---------------------T--GGCCCTTTTTCATCG-----ACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTG---CATAAAC-GCCACAAA-GAATGATTTCTGAAAA-TTTTGATAGTTCCCTTTGTTAT--TGT-CATG--TGGA-ATGGTGAAAAATCGACTGATTTCTAAAT-TCATA--CCGGGCACTTTTC-GTCAAGG-TTTGTAAT--CTTCATT-TT-CATGAAATAATGATA-----A---A-AGGAG--TGGGCGGGTCTA-AACAGAATAAAGAAT--A-GACCGCA--TGCGATATTCTCC--GTTTG----------TAAAT--AAACA--TAGAACA---------AACGTCAAA-TT-CCACAC-TA-TTTAATTC-ATGTG----------TATATATATTTTAAT-TTGAGTTTATATATTAAATATT-CACACAAGTTAG-C--ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAAT-GAATGCGA---------TATTTTG-TTGCATGTT---ATA-CATGCCTGCAT-GTACGCCAG------------------CATCT-TATA-AT-AATATATTGTAATGTGTAAAA-TTAATTTTGATGAATAAT-TTAAAAATAA---ATACTAGTGGCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTTG--TTT--AGAAAAA------C--AGATTT----TNNNNN-N-NN--NN-NNNNNNNN-NNNNN--------N--NNN-NNNNN---NNNNN-N-N--NTGCGA--G-GG-GAG-C---GGA--ATGAAC-CAAAA---CGCTTG--G-CTAGCG-A---------ATTG--TGCT--TTG-AAAC-TACACGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATAC-AATTTATCAAA----ACAGA-TTTGTGT--GTTGGTAAAT--AAATTATTAT-ATTCGAAG----AC--AC-TTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTG-TG-TATTC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTAGGT--CGGTCGGAGTTC-AAATCTGGTTTCCATAA-TGGAGGT--GGGGCTAGTGAAATTTTTCTCATA-TT-TTTTTTTAAAATAT-CGGCGATTTAACA---TACGGGTATTGCTG---TACGAATTTTAAAAG-CTTTGATGATATTCAAACACAGCCT-GA
gi|3 : aTATAATAGGATA-AGGTG--AGGGCGGGTCTA-AACAGAA-----ATT--ACGAA-GCA--TGCGAA--TCGCCTCGTTTACATACATAGATAAAT--CAATA--CAGTACATCACTTGTAAAGGTCAA--TT-CCAC-C-TATTTTATCTCAATGTA----------TATATAT-TTTTAAT-TTCC-TATATATACTAAATATTGCACACAA-TT--TCAAACAAA-ATTA-TTTCCTCTATCGT-TCACGACTATATAAATTGGATGCGA---------TATTTTGA-TAAATGTTA--ACACCATGCCTGCCTGGTACGCCAGCATGGGTATATGTGTCTACATTT-TAAACATAAATAGA-TGTGAAGTGTCAAA-TT-ATTTTACTGGGTGA--T---ATATAACTGCTAGTAAT-GCATTT-CACC--TTGC-AA-TGAT-T-AAACAGTCATTTTGT--GTT--GGAAAAT------CTTAAATTT----TATCTT-CGGC--TAGGCCAGGGGTTTTTC--------GT-GGT-GCACTACCCTGCTGCGC--CTGTGC--G-GGTGAGCCGCAGGA--GTGGA--CGAAAAC-C-CCTT--G-CTAGCGCA---------ATTTC-TGCT--TTGAAAAC-T-CAAG-AAATTTAAATATAGT-TA-TATA-TATCTTTATCTCAAT-C--ATTCATTCAAAG---TAGATTTTTAGTTGGTTGGTAAATACAGATTAGTGT-A-TCGAAGGGCTACTGACTTTTTTTa
gi|4 : tacAAGGATGAAGTGAAGTTTCCTTATGTGC-------------------------TGGTCCCTTTTT----ACATTGACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTTTTTACATAAAC-GCCACAAA-GATTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTT-TATTGT-CATG--TGGA-ATGCTGAAAAATCGACAGATTTCTAAACCTCATA--CCGGGCAATTTCCCGTCAAGG-TTTGTAATATCTTCATTCGT-CATGAAGTAATG---TAATAA---A-AGGAG--TGGGCGGGTTAA-AACAGAAT---GA-T--A-GACTGCA--TGCGAT--TTCCC--GTTTG---------GTAAAT--AACCA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATA--TTCTAAT-TTGA-TTTAC-T-CTAAATATT-CACACAATTTAG-C--ACAAAGA-TA-TATCC-CT-TCTT-TCAAGA--ATATAAATGG-ATGCGAATGTAATTGTATTTTGATTGCGTGTT---A-A-CATGCCTGCAT-GTACGCCAGCATG----CATGTGT-TACATTT-TAttta
gi|5 : TCCATCGAACTT--ATGTTTCTTGGGTT-GT-GAAAGTGTGGCGGGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAATCCTCATGC-TTGAACCTCAGACTT-ATATA-TTGTTTGTGGCGAATTTATATGCCA--TGTAGCA-TTTAAA---TCA-TAAAAGTACAAATGTTGA-TGAACTGAATC-CTGTAAAT-----TTGAACTTGAAAT--AAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|6 : gtaacgtAATTT---AAGTTTTTAATAACATACAAACA--GTTGAGATTATCTAACAGCACCTGCTTG-TGCCTAT---------ATATTTCCAGATTTGAT-AAGATT-TGGGCGGGACCAAATGCCTTTGAAAATTTCA-GC--TAATGAGGAAACCCCAAGCTT---------------ATATA-CCGTTTGTGGCGAATGTGTGC---ACGTGTAAAAGTTTAAAAATT-A-TAGAAGTATAAATG-TGAATGAGTTGAATC-TTGTAAAT-----TTTAACATGAAACCAAAgttctcttcatcct
gi|7 : gaAAAGCA-TTTGAATCACGTGATA-TA-AT-ATTTGT----GTAGAG-----------CAAGTTACAT--------GAGTTC-AAA-CAGGTTTTCAGAA-TG-----AAGGTTCTGGTGAAATTCTTGCTG-A-TTATTTTTTTTTAATAT-CAGCGAT---GCAATGTACGGCTATCGCTG---TACGAAATTTAAAAGTTTTTAATAATATAC-AACACAGt
gi|8 : tcgaatacactctaattaaagttcatgacggtgaggtcgtgtttatgtgctACTAAT-ACATGTACATCATTTGTATA-C-AT-TAAAGTT-----TTTGTAGTTTGAAGAAAAAATTGAGT-TAGATTTTGATCATCTT-C-GC--TA-GCCAAGGG-TTTC------------GGT-CCACT---CCGCT-C-C--CCAT----G-GG-GAG-C---GGA--GTGGAC-CGAAAC--C-CTTG--G-CTAGCG-A---------Attt
gi|9 : taatgtaaaagataattagtgcttgtttg----CATCTT-C-GC--TA-GTCAAAGT-TTTTTTTTTACATGTTGGT-CCATT---TTGCT-C-C--TCG--------------------------GAC-CGAAAAC-C-CTTT--G-TTAGCG-AACATGGTATATTAA-TGCT--TTACAAGCATAAAGAAATATATAC--ATgatg
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 44444444444444444444444444 2222222222 1 1 1 11 11 44444 1 1 1 11 1 11 1 1 11 1 11111 11 1 222222222222 11 11 11 5555555555 11 11 444444444 22 1 1 4444444444 11 1 1 1 2 2222 11 333333333 3333333 1 333333333333 1 1 1 1 2 333333333333333 1 1 111 1 11 1 11 11 333333333 1111 444444444444 111 5555555555555555555555555 222 22222222222222 222222 11 1 1 2222222 1 33333 1 11 11 2 111 2222 11 1 11 222 11 1 1 1 1111 222222 11 4444444 1 1 1111 1 1111 1 111 222 1 444444444444 11 1 1 1 1 11 222222222222222 1 11 11 22 2222222 1 1 11 1 33333 1 1 11
lowQualScore : 22222222222222222222222222 1111111111 3 3 3 88 88 99999 3 3 7 6 7 7 3 88 3 6 88 6 1 3 3 99 77 3 7 3 88888 33 0 333333333333 6 33 33 2 33 3333333333 33 33 000000000 33 0 3 0 3 6 3333333333 33 0 0 3 3 0 0 0 4444 8 8 8 8 0 8 11 5 3 222222222 66 1111111 0 2 444444444444 0 3 7 3 3 7 6 777777777777777 0 0 777 3 0 2 88 3 7 0 33 33 333333333 7777 3 3 44 6 3 222222222222 4 2 222 1 4 0000000000000000000000000 66 777 888 4 6666 4 99999999999999 333333 3 2 7 33 2 0 0 9999999 7 7 3 11111 3 22 88 6 88 6 777 7 8888 88 7 5 88 111 1 88 0 2 0 0 1111 222222 55 9 1 4444444 0 3 0 2 0000 2 8888 7 3 7 000 1 333 3 3 1 3 2 2 3 1 1 333333333333 2 0 33 0 0 2 0 3 0 33 3 2 7 444444444444444 3 7 00 55 00 7777777 3 3 55 3 33333 77 1 5 1 5 88 1
lowQualScore : .......................... .......... . . . .. .. ..... . . . . . . . .. . . .. . . . . .. .. . . . ..... .. . ............ . .. .. . .. .......... .. .. ......... .. . . . . . .......... .. . . . . . . . .... . . . . . . .. . . ......... .. ....... . . ............ . . . . . . . ............... . . ... . . . .. . . . .. .. ......... .... . . .. . . ............ . . ... . . ......................... .. ... ... . .... . .............. ...... . . . .. . . . ....... . . . ..... . .. .. . .. . ... . .... .. . . .. ... . .. . . . . .... ...... .. . . ....... . . . . .... . .... . . . ... . ... . . . . . . . . . ............ . . .. . . . . . . .. . . . ............... . . .. .. .. ....... . . .. . ..... .. . . . . .. .
lowQualScore : 77777777777777777777777777 3333333333 3 3 3 33 33 00000 3 3 3 7 3 3 3 33 3 7 33 7 0 3 3 33 77 3 3 2 55555 88 0 555555555555 5 88 88 5 88 2222222222 88 88 000000000 88 0 2 0 2 5 8888888888 22 0 0 2 2 0 0 8 2222 0 0 0 0 8 0 00 0 8 000000000 55 5555555 0 5 888888888888 0 3 3 3 3 3 7 777777777777777 0 0 000 2 0 5 22 2 0 0 88 88 000000000 0000 3 3 66 7 3 222222222222 4 9 222 1 4 9999999999999999999999999 11 444 999 4 9999 4 00000000000000 555555 2 5 0 88 5 0 0 0000000 3 3 3 33333 3 00 33 7 33 7 777 3 3333 33 3 5 55 000 0 00 0 0 0 0 5555 222222 22 2 0 0000000 0 2 0 5 6666 0 3333 3 3 3 000 0 333 2 2 0 2 5 5 3 0 0 000000000000 5 8 88 0 0 5 0 2 0 88 2 5 3 000000000000000 3 3 33 77 77 7777777 3 3 77 3 33333 77 0 5 0 0 55 0
consensus : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AA---------TTNA-TGCT--TTGAAAACTACANGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
Reference ( family-172 ) : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AA---------TTNA-TGCT--TTGAAAACTACACGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
gi|1 : AAGGATCAAGTGAAGTCTCCATATGCGCTGGCCCCTTTTTACATTACTGCGCCTGGGCCCGCTTTCATTACATT-ACTACATAACTCCAAAACTAACTACA--CTAAAGTTAGGAATTTTT------ACAAACAGCCACAAAAGAATGAGT-CTGAACACTTTTGATAGTTCCCTTTCTTATATTGTGCATGCATGGATATGCTGAAAAATCGACTGATTTCTAAACCTCATGAGCCGGG-AGTTTTC-GTCAAGGGTTTGTAA-GTCTTTATTCCTTCATGACATAATGATATAATAA---ACAGGAGGATGGACGGGTCTAGAACAGAAT---GAATCTA-GACCGCGCCTGCGAT--TTGCC--GTTTGTAT-----GATAAATTTAAACAATTAGAACA---------AACGTCAACGTTGCCACACCTATTTTAATTCGATGTAACTTAAATGATATATAT-TTTTGATATTGA-TTTATATACTAAATATT-CACACGA-TTAGCC--ACAGA-A-TAGTATCC-CTATCTCATCAAGA--ATATAAATGGAATTCGA---------TCTTTTGATTGCATGTCTGAATACCATGCCTGCAT-GTGCGGCAGCATG----TATG-GTATACATTTGTATA-ATAAATATA-TGTAATGTGTAAAAATTAATTTTG-TGGATAATAT---AAAT--C-AATACTAGT-GCATTT-CACC----GCAAAATGA-GTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-CAGACTT----TATCTTGT-GCAGTA-GCCAAGGT-TTTTC--------G--GCTGCCACC---CTGCT-CGC--CTGTG---GCGG-GAGTC---GGA--ATGGAC-CAAAA---C-CTTG--A-CTAGCG-AA---------TTCAGTGGTGGTGAAAAACTACACGTATATTTAA--ATAGTATACTACAGAA----TATCTAAATACAAATTTATCAAGAGTCATAGA-TTTAGGT--GTTG-TAAAT--AAATTA-TATAA-TCG-AG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGCCGGACAATGCACTTCAAATCACGTG-TGTTA-TCGGTCC-TTTTGATATGAGGCGAGAG-TTCACAGTATGTAATGG--GAAGTTCAAAATCTGGCTTTCCTAATTGGA-GTAAGGTGCT-ATGAAATTTTTCCCA-ATTTATTTTCTAAAAATATCCGGCGACTTAACAATAAGCGGTTAACGCTATTTTACAATTTTTAAAAGTTTTTAATGATATTCAAACACA-CCT-GATCCTGTAATCG-A------TGATGTCCATCGAATTTTAGTGTTTCTTGGGTG-ATAAAAAGTGTGCGCGGG-CTTAATGCCTATGAG-AATGCAGGCTGTAATGAGGAAA-CCCAAGCTTTGAA-CTTAGACTTAATATAGTCGTTTGTGGCGAA-TTATACGTCATATGTAGCA--TTAAA--TTCATTAAAAGTACAATTG-TGA-TGA--TGAAACATTGTAAGTGGTTATTTAACATGATAACAAAGAAAATGTATTTTTATTAAATATAGT-GGGGCCGTCTAAGCAATGCCA
gi|10 : aGATGT----CATCCT-C--C--TAAGTCAAGGG-TTCT------------GAT-CCGCC---CCGCT-C-C--ACATAAATG-TG-GAGC-----GG--GTGGATAAGAAAT--T-CTTG--A-CTTGGG-AA---------tcat
gi|11 : aaaaaaaaatcctgattttatcttttcagttT----CATCTT-T-GC--TA-GCCAAGGG-Tgatg
gi|11 : tagttaaatcattgtagtttgaATCTT-C-GC--TA-GCCAAGGG-Tgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcacccttggctagcgaagatat
gi|12 : tagttaaatcattgtagtttgatcatctttgctagccaagggtgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcTCTT-T-GC--TA-GACAAGGG-TTTTC--------T--GGT-CCGCTG--CTACT-C-C--CTATA---G-GA-GAGCA---GGA--GTGGAC-TGAAATACC-CTTGCCGCCTAGCG-AA---------at
gi|13 : tggatgtttggttgcAA------A-TAGATTTACCGCATCTT-C-AC--CA-GCCAAGGG-TT-----------A--GAT-CCCCT---CACCT-C-TAACCG-G---G-G------C---GGATTGTAGAC---------C-CTCG--G-CAAGCG-AA---------gatg
gi|14 : aaaacttAACCGTA------TG--GTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCTTATGAGAAATGCA-GC--T--TGAGGAAACCgacac
gi|15 : ATGTA-TTCAAATCACGTG-TG-TA-TC-GTCT-T----ATAGA--GCGAGAGATTCAAGGTAGGT--C-G-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GT
gi|16 : T----CATCTT-C-GC--TA-GCCAAGGG-TTTTT-----------GGT-CCACT---CCACT-C-C--C----------G-GA--------------------AAC---C-CTTG--T-CTAGCG-AA-----------GA-TGC
gi|17 : ----CATCTT-C-GC--TA-GCCAAGGG-Tcactggttat
gi|18 : TAGC---ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAATGGAATGCGA---------TATgacgtacacgggtttctactaaccaccgtgtatcgggcaccctgctacgcgaaaga
gi|2 : ATGAAGTGCAGTCTCCATATGCGC-GG---------------------T--GGCCCTTTTTCATCG-----ACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTG---CATAAAC-GCCACAAA-GAATGATTTCTGAAAA-TTTTGATAGTTCCCTTTGTTAT--TGT-CATG--TGGA-ATGGTGAAAAATCGACTGATTTCTAAAT-TCATA--CCGGGCACTTTTC-GTCAAGG-TTTGTAAT--CTTCATT-TT-CATGAAATAATGATA-----A---A-AGGAG--TGGGCGGGTCTA-AACAGAATAAAGAAT--A-GACCGCA--TGCGATATTCTCC--GTTTG----------TAAAT--AAACA--TAGAACA---------AACGTCAAA-TT-CCACAC-TA-TTTAATTC-ATGTG----------TATATATATTTTAAT-TTGAGTTTATATATTAAATATT-CACACAAGTTAG-C--ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAAT-GAATGCGA---------TATTTTG-TTGCATGTT---ATA-CATGCCTGCAT-GTACGCCAG------------------CATCT-TATA-AT-AATATATTGTAATGTGTAAAA-TTAATTTTGATGAATAAT-TTAAAAATAA---ATACTAGTGGCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTTG--TTT--AGAAAAA------C--AGATTT----TNNNNN-N-NN--NN-NNNNNNNN-NNNNN--------N--NNN-NNNNN---NNNNN-N-N--NTGCGA--G-GG-GAG-C---GGA--ATGAAC-CAAAA---CGCTTG--G-CTAGCG-AA---------TTG--TGCT--TTG-AAACTACACGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAA----ACAGA-TTTGTGT--GTTGGTAAAT--AAATTATTAT-ATTCGAAG----AC--AC-TTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTG-TG-TATTC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTAGGT--CGGTCGGAGTTC-AAATCTGGTTTCCATAA-TGGAGGT--GGGGCTAGTGAAATTTTTCTCATA-TT-TTTTTTTAAAATAT-CGGCGATTTAACA---TACGGGTATTGCTG---TACGAATTTTAAAAG-CTTTGATGATATTCAAACACAGCCT-GA
gi|3 : aTATAATAGGATA-AGGTG--AGGGCGGGTCTA-AACAGAA-----ATT--ACGAA-GCA--TGCGAA--TCGCCTCGTTTACATACATAGATAAAT--CAATA--CAGTACATCACTTGTAAAGGTCAA--TT-CCAC-C-TATTTTATCTCAATGTA----------TATATAT-TTTTAAT-TTCC-TATATATACTAAATATTGCACACAA-TT--TCAAACAAA-ATTA-TTTCCTCTATCGT-TCACGACTATATAAATTGGATGCGA---------TATTTTGA-TAAATGTTA--ACACCATGCCTGCCTGGTACGCCAGCATGGGTATATGTGTCTACATTT-TAAACATAAATAGA-TGTGAAGTGTCAAA-TT-ATTTTACTGGGTGA--T---ATATAACTGCTAGTAAT-GCATTT-CACC--TTGC-AA-TGAT-T-AAACAGTCATTTTGT--GTT--GGAAAAT------CTTAAATTT----TATCTT-CGGC--TAGGCCAGGGGTTTTTC--------GT-GGT-GCACTACCCTGCTGCGC--CTGTGC--G-GGTGAGCCGCAGGA--GTGGA--CGAAAAC-C-CCTT--G-CTAGCGCAA---------TTTC-TGCT--TTGAAAACT-CAAG-AAATTTAAATATAGT-TA-TATA-TATCTTTATCTCAAT-C-A-TTCATTCAAAG---TAGATTTTTAGTTGGTTGGTAAATACAGATTAGTGT-A-TCGAAGGGCTACTGACTTTTTTTa
gi|4 : tacAAGGATGAAGTGAAGTTTCCTTATGTGC-------------------------TGGTCCCTTTTT----ACATTGACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTTTTTACATAAAC-GCCACAAA-GATTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTT-TATTGT-CATG--TGGA-ATGCTGAAAAATCGACAGATTTCTAAACCTCATA--CCGGGCAATTTCCCGTCAAGG-TTTGTAATATCTTCATTCGT-CATGAAGTAATG---TAATAA---A-AGGAG--TGGGCGGGTTAA-AACAGAAT---GA-T--A-GACTGCA--TGCGAT--TTCCC--GTTTG---------GTAAAT--AACCA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATA--TTCTAAT-TTGA-TTTAC-T-CTAAATATT-CACACAATTTAG-C--ACAAAGA-TA-TATCC-CT-TCTT-TCAAGA--ATATAAATGG-ATGCGAATGTAATTGTATTTTGATTGCGTGTT---A-A-CATGCCTGCAT-GTACGCCAGCATG----CATGTGT-TACATTT-TAttta
gi|5 : TCCATCGAACTT--ATGTTTCTTGGGTT-GT-GAAAGTGTGGCGGGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAATCCTCATGC-TTGAACCTCAGACTT-ATATA-TTGTTTGTGGCGAATTTATATGCCA--TGTAGCA-TTTAAA---TCA-TAAAAGTACAAATGTTGA-TGAACTGAATC-CTGTAAAT-----TTGAACTTGAAAT--AAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|6 : gtaacgtAATTT---AAGTTTTTAATAACATACAAACA--GTTGAGATTATCTAACAGCACCTGCTTG-TGCCTAT---------ATATTTCCAGATTTGAT-AAGATT-TGGGCGGGACCAAATGCCTTTGAAAATTTCA-GC--TAATGAGGAAACCCCAAGCTT---------------ATATA-CCGTTTGTGGCGAATGTGTGC---ACGTGTAAAAGTTTAAAAATT-A-TAGAAGTATAAATG-TGAATGAGTTGAATC-TTGTAAAT-----TTTAACATGAAACCAAAgttctcttcatcct
gi|7 : gaAAAGCA-TTTGAATCACGTGATA-TA-AT-ATTTGT----GTAGAG-----------CAAGTTACAT--------GAGTTC-AAA-CAGGTTTTCAGAA-TG-----AAGGTTCTGGTGAAATTCTTGCTG-A-TTATTTTTTTTTAATAT-CAGCGAT---GCAATGTACGGCTATCGCTG---TACGAAATTTAAAAGTTTTTAATAATATAC-AACACAGt
gi|8 : tcgaatacactctaattaaagttcatgacggtgaggtcgtgtttatgtgctACTAAT-ACATGTACATCATTTGTATA-C-AT-TAAAGTT-----TTTGTAGTTTGAAGAAAAAATTGAGT-TAGATTTTGATCATCTT-C-GC--TA-GCCAAGGG-TTTC------------GGT-CCACT---CCGCT-C-C--CCAT----G-GG-GAG-C---GGA--GTGGAC-CGAAAC--C-CTTG--G-CTAGCG-AA---------ttt
gi|9 : taatgtaaaagataattagtgcttgtttg----CATCTT-C-GC--TA-GTCAAAGT-TTTTTTTTTACATGTTGGT-CCATT---TTGCT-C-C--TCG--------------------------GAC-CGAAAAC-C-CTTT--G-TTAGCG-AACATGGTATATTAA-TGCT--T-------TACAAGCATAAAGAA--ATA---TA-TACA-gatg
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 44444444444444444444444444 2222222222 1 1 1 11 11 44444 1 1 1 11 1 11 1 1 11 1 11111 11 1 222222222222 11 11 11 5555555555 11 11 444444444 22 1 1 4444444444 11 1 1 1 2 2222 11 333333333 3333333 1 333333333333 1 1 1 1 2 333333333333333 1 1 111 1 11 1 11 11 333333333 1111 444444444444 111 5555555555555555555555555 222 22222222222222 222222 11 1 1 2222222 1 33333 1 11 11 2 111 2222 11 1 11 222 11 1 1 1 1111 222222 11 4444444 1 1 1111 1 1111 1 111 222 1 444444444444 11 1 1 1 1 11 222222222222222 1 11 11 22 2222222 1 1 11 1 33333 1 1 11
lowQualScore : 22222222222222222222222222 1111111111 3 3 3 88 88 99999 3 3 7 6 7 7 3 88 3 6 88 6 1 3 3 99 77 3 7 3 88888 33 0 333333333333 6 33 33 2 33 3333333333 33 33 000000000 33 0 3 0 3 6 3333333333 33 0 0 3 3 0 0 0 4444 8 8 8 8 0 8 11 5 3 222222222 66 1111111 0 2 444444444444 0 3 7 3 3 7 6 777777777777777 0 0 777 3 0 2 88 3 7 0 33 33 333333333 7777 3 3 44 6 3 222222222222 4 2 222 1 4 0000000000000000000000000 66 777 888 4 6666 4 99999999999999 333333 3 1 7 33 2 0 0 9999999 7 7 3 11111 3 22 88 6 88 6 777 7 8888 88 7 5 88 111 1 88 0 2 0 0 1111 222222 55 9 1 4444444 0 3 0 2 0000 2 8888 7 3 7 000 1 333 3 3 1 3 2 2 3 1 1 333333333333 2 0 33 0 0 2 0 3 0 33 3 2 7 444444444444444 3 7 00 55 00 7777777 3 3 55 3 33333 77 1 5 1 5 88 1
lowQualScore : .......................... .......... . . . .. .. ..... . . . . . . . .. . . .. . . . . .. .. . . . ..... .. . ............ . .. .. . .. .......... .. .. ......... .. . . . . . .......... .. . . . . . . . .... . . . . . . .. . . ......... .. ....... . . ............ . . . . . . . ............... . . ... . . . .. . . . .. .. ......... .... . . .. . . ............ . . ... . . ......................... .. ... ... . .... . .............. ...... . . . .. . . . ....... . . . ..... . .. .. . .. . ... . .... .. . . .. ... . .. . . . . .... ...... .. . . ....... . . . . .... . .... . . . ... . ... . . . . . . . . . ............ . . .. . . . . . . .. . . . ............... . . .. .. .. ....... . . .. . ..... .. . . . . .. .
lowQualScore : 77777777777777777777777777 3333333333 3 3 3 33 33 00000 3 3 3 7 3 3 3 33 3 7 33 7 0 3 3 33 77 3 3 2 55555 88 0 555555555555 5 88 88 5 88 2222222222 88 88 000000000 88 0 2 0 2 5 8888888888 22 0 0 2 2 0 0 8 2222 0 0 0 0 8 0 00 0 8 000000000 55 5555555 0 5 888888888888 0 3 3 3 3 3 7 777777777777777 0 0 000 2 0 5 22 2 0 0 88 88 000000000 0000 3 3 66 7 3 222222222222 4 9 222 1 4 9999999999999999999999999 11 444 999 4 9999 4 00000000000000 555555 2 0 0 88 5 0 0 0000000 3 3 3 33333 3 00 33 7 33 7 777 3 3333 33 3 5 55 000 0 00 0 0 0 0 5555 222222 22 2 0 0000000 0 2 0 5 6666 0 3333 3 3 3 000 0 333 2 2 0 2 5 5 3 0 0 000000000000 5 8 88 0 0 5 0 2 0 88 2 5 3 000000000000000 3 3 33 77 77 7777777 3 3 77 3 33333 77 0 5 0 0 55 0
consensus : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AA---------TTNA-TGCT--TTGAAAACTACANGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
Reference ( family-172 ) : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AA---------TTNA-TGCT--TTGAAAACTACANGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
gi|1 : AAGGATCAAGTGAAGTCTCCATATGCGCTGGCCCCTTTTTACATTACTGCGCCTGGGCCCGCTTTCATTACATT-ACTACATAACTCCAAAACTAACTACA--CTAAAGTTAGGAATTTTT------ACAAACAGCCACAAAAGAATGAGT-CTGAACACTTTTGATAGTTCCCTTTCTTATATTGTGCATGCATGGATATGCTGAAAAATCGACTGATTTCTAAACCTCATGAGCCGGG-AGTTTTC-GTCAAGGGTTTGTAA-GTCTTTATTCCTTCATGACATAATGATATAATAA---ACAGGAGGATGGACGGGTCTAGAACAGAAT---GAATCTA-GACCGCGCCTGCGAT--TTGCC--GTTTGTAT-----GATAAATTTAAACAATTAGAACA---------AACGTCAACGTTGCCACACCTATTTTAATTCGATGTAACTTAAATGATATATAT-TTTTGATATTGA-TTTATATACTAAATATT-CACACGA-TTAGCC--ACAGA-A-TAGTATCC-CTATCTCATCAAGA--ATATAAATGGAATTCGA---------TCTTTTGATTGCATGTCTGAATACCATGCCTGCAT-GTGCGGCAGCATG----TATG-GTATACATTTGTATA-ATAAATATA-TGTAATGTGTAAAAATTAATTTTG-TGGATAATAT---AAAT--C-AATACTAGT-GCATTT-CACC----GCAAAATGA-GTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-CAGACTT----TATCTTGT-GCAGTA-GCCAAGGT-TTTTC--------G--GCTGCCACC---CTGCT-CGC--CTGTG---GCGG-GAGTC---GGA--ATGGAC-CAAAA---C-CTTG--A-CTAGCG-AA---------TTCAGTGGTGGTGAAAAACTACACGTATATTTAA--ATAGTATACTACAGAA----TATCTAAATACAAATTTATCAAGAGTCATAGA-TTTAGGT--GTTG-TAAAT--AAATTA-TATAA-TCG-AG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGCCGGACAATGCACTTCAAATCACGTG-TGTTA-TCGGTCC-TTTTGATATGAGGCGAGAG-TTCACAGTATGTAATGG--GAAGTTCAAAATCTGGCTTTCCTAATTGGA-GTAAGGTGCT-ATGAAATTTTTCCCA-ATTTATTTTCTAAAAATATCCGGCGACTTAACAATAAGCGGTTAACGCTATTTTACAATTTTTAAAAGTTTTTAATGATATTCAAACACA-CCT-GATCCTGTAATCG-A------TGATGTCCATCGAATTTTAGTGTTTCTTGGGTG-ATAAAAAGTGTGCGCGGG-CTTAATGCCTATGAG-AATGCAGGCTGTAATGAGGAAA-CCCAAGCTTTGAA-CTTAGACTTAATATAGTCGTTTGTGGCGAA-TTATACGTCATATGTAGCA--TTAAA--TTCATTAAAAGTACAATTG-TGA-TGA--TGAAACATTGTAAGTGGTTATTTAACATGATAACAAAGAAAATGTATTTTTATTAAATATAGT-GGGGCCGTCTAAGCAATGCCA
gi|10 : aGATGT----CATCCT-C--C--TAAGTCAAGGG-TTCT------------GAT-CCGCC---CCGCT-C-C--ACATAAATG-TG-GAGC-----GG--GTGGATAAGAAAT--T-CTTG--A-CTTGGG-AA---------tcat
gi|11 : aaaaaaaaatcctgattttatcttttcagttT----CATCTT-T-GC--TA-GCCAAGGG-Tgatg
gi|11 : tagttaaatcattgtagtttgaATCTT-C-GC--TA-GCCAAGGG-Tgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcacccttggctagcgaagatat
gi|12 : tagttaaatcattgtagtttgatcatctttgctagccaagggtgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcTCTT-T-GC--TA-GACAAGGG-TTTTC--------T--GGT-CCGCTG--CTACT-C-C--CTATA---G-GA-GAGCA---GGA--GTGGAC-TGAAATACC-CTTGCCGCCTAGCG-AA---------at
gi|13 : tggatgtttggttgcAA------A-TAGATTTACCGCATCTT-C-AC--CA-GCCAAGGG-TT-----------A--GAT-CCCCT---CACCT-C-TAACCG-G---G-G------C---GGATTGTAGAC---------C-CTCG--G-CAAGCG-AA---------gatg
gi|14 : aaaacttAACCGTA------TG--GTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCTTATGAGAAATGCA-GC--T--TGAGGAAACCgacac
gi|15 : ATGTA-TTCAAATCACGTG-TG-TA-TC-GTCT-T----ATAGA--GCGAGAGATTCAAGGTAGGT--C-G-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GT
gi|16 : T----CATCTT-C-GC--TA-GCCAAGGG-TTTTT-----------GGT-CCACT---CCACT-C-C--C----------G-GA--------------------AAC---C-CTTG--T-CTAGCG-AA-----------GA-TGC
gi|17 : ----CATCTT-C-GC--TA-GCCAAGGG-Tcactggttat
gi|18 : TAGC---ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAATGGAATGCGA---------TATgacgtacacgggtttctactaaccaccgtgtatcgggcaccctgctacgcgaaaga
gi|2 : ATGAAGTGCAGTCTCCATATGCGC-GG---------------------T--GGCCCTTTTTCATCG-----ACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTG---CATAAAC-GCCACAAA-GAATGATTTCTGAAAA-TTTTGATAGTTCCCTTTGTTAT--TGT-CATG--TGGA-ATGGTGAAAAATCGACTGATTTCTAAAT-TCATA--CCGGGCACTTTTC-GTCAAGG-TTTGTAAT--CTTCATT-TT-CATGAAATAATGATA-----A---A-AGGAG--TGGGCGGGTCTA-AACAGAATAAAGAAT--A-GACCGCA--TGCGATATTCTCC--GTTTG----------TAAAT--AAACA--TAGAACA---------AACGTCAAA-TT-CCACAC-TA-TTTAATTC-ATGTG----------TATATATATTTTAAT-TTGAGTTTATATATTAAATATT-CACACAAGTTAG-C--ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAAT-GAATGCGA---------TATTTTG-TTGCATGTT---ATA-CATGCCTGCAT-GTACGCCAG------------------CATCT-TATA-AT-AATATATTGTAATGTGTAAAA-TTAATTTTGATGAATAAT-TTAAAAATAA---ATACTAGTGGCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTTG--TTT--AGAAAAA------C--AGATTT----TNNNNN-N-NN--NN-NNNNNNNN-NNNNN--------N--NNN-NNNNN---NNNNN-N-N--NTGCGA--G-GG-GAG-C---GGA--ATGAAC-CAAAA---CGCTTG--G-CTAGCG-AA---------TTG--TGCT--TTG-AAACTACACGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAA----ACAGA-TTTGTGT--GTTGGTAAAT--AAATTATTAT-ATTCGAAG----AC--AC-TTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTG-TG-TATTC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTAGGT--CGGTCGGAGTTC-AAATCTGGTTTCCATAA-TGGAGGT--GGGGCTAGTGAAATTTTTCTCATA-TT-TTTTTTTAAAATAT-CGGCGATTTAACA---TACGGGTATTGCTG---TACGAATTTTAAAAG-CTTTGATGATATTCAAACACAGCCT-GA
gi|3 : aTATAATAGGATA-AGGTG--AGGGCGGGTCTA-AACAGAA-----ATT--ACGAA-GCA--TGCGAA--TCGCCTCGTTTACATACATAGATAAAT--CAATA--CAGTACATCACTTGTAAAGGTCAA--TT-CCAC-C-TATTTTATCTCAATGTA----------TATATAT-TTTTAAT-TTCC-TATATATACTAAATATTGCACACAA-TT--TCAAACAAA-ATTA-TTTCCTCTATCGT-TCACGACTATATAAATTGGATGCGA---------TATTTTGA-TAAATGTTA--ACACCATGCCTGCCTGGTACGCCAGCATGGGTATATGTGTCTACATTT-TAAACATAAATAGA-TGTGAAGTGTCAAA-TT-ATTTTACTGGGTGA--T---ATATAACTGCTAGTAAT-GCATTT-CACC--TTGC-AA-TGAT-T-AAACAGTCATTTTGT--GTT--GGAAAAT------CTTAAATTT----TATCTT-CGGC--TAGGCCAGGGGTTTTTC--------GT-GGT-GCACTACCCTGCTGCGC--CTGTGC--G-GGTGAGCCGCAGGA--GTGGA--CGAAAAC-C-CCTT--G-CTAGCGCAA---------TTTC-TGCT--TTGAAAACT-CAAG-AAATTTAAATATAGT-TA-TATA-TATCTTTATCTCAAT-C-A-TTCATTCAAAG---TAGATTTTTAGTTGGTTGGTAAATACAGATTAGTGT-A-TCGAAGGGCTACTGACTTTTTTTa
gi|4 : tacAAGGATGAAGTGAAGTTTCCTTATGTGC-------------------------TGGTCCCTTTTT----ACATTGACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTTTTTACATAAAC-GCCACAAA-GATTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTT-TATTGT-CATG--TGGA-ATGCTGAAAAATCGACAGATTTCTAAACCTCATA--CCGGGCAATTTCCCGTCAAGG-TTTGTAATATCTTCATTCGT-CATGAAGTAATG---TAATAA---A-AGGAG--TGGGCGGGTTAA-AACAGAAT---GA-T--A-GACTGCA--TGCGAT--TTCCC--GTTTG---------GTAAAT--AACCA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATA--TTCTAAT-TTGA-TTTAC-T-CTAAATATT-CACACAATTTAG-C--ACAAAGA-TA-TATCC-CT-TCTT-TCAAGA--ATATAAATGG-ATGCGAATGTAATTGTATTTTGATTGCGTGTT---A-A-CATGCCTGCAT-GTACGCCAGCATG----CATGTGT-TACATTT-TAttta
gi|5 : TCCATCGAACTT--ATGTTTCTTGGGTT-GT-GAAAGTGTGGCGGGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAATCCTCATGC-TTGAACCTCAGACTT-ATATA-TTGTTTGTGGCGAATTTATATGCCA--TGTAGCA-TTTAAA---TCA-TAAAAGTACAAATGTTGA-TGAACTGAATC-CTGTAAAT-----TTGAACTTGAAAT--AAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|6 : gtaacgtAATTT---AAGTTTTTAATAACATACAAACA--GTTGAGATTATCTAACAGCACCTGCTTG-TGCCTAT---------ATATTTCCAGATTTGAT-AAGATT-TGGGCGGGACCAAATGCCTTTGAAAATTTCA-GC--TAATGAGGAAACCCCAAGCTT---------------ATATA-CCGTTTGTGGCGAATGTGTGC---ACGTGTAAAAGTTTAAAAATT-A-TAGAAGTATAAATG-TGAATGAGTTGAATC-TTGTAAAT-----TTTAACATGAAACCAAAgttctcttcatcct
gi|7 : gaAAAGCA-TTTGAATCACGTGATA-TA-AT-ATTTGT----GTAGAG-----------CAAGTTACAT--------GAGTTC-AAA-CAGGTTTTCAGAA-TG-----AAGGTTCTGGTGAAATTCTTGCTG-A-TTATTTTTTTTTAATAT-CAGCGAT---GCAATGTACGGCTATCGCTG---TACGAAATTTAAAAGTTTTTAATAATATAC-AACACAGt
gi|8 : tcgaatacactctaattaaagttcatgacggtgaggtcgtgtttatgtgctACTAAT-ACATGTACATCATTTGTATA-C-AT-TAAAGTT-----TTTGTAGTTTGAAGAAAAAATTGAGT-TAGATTTTGATCATCTT-C-GC--TA-GCCAAGGG-TTTC------------GGT-CCACT---CCGCT-C-C--CCAT----G-GG-GAG-C---GGA--GTGGAC-CGAAAC--C-CTTG--G-CTAGCG-AA---------ttt
gi|9 : taatgtaaaagataattagtgcttgtttg----CATCTT-C-GC--TA-GTCAAAGT-TTTTTTTTTACATGTTGGT-CCATT---TTGCT-C-C--TCG--------------------------GAC-CGAAAAC-C-CTTT--G-TTAGCG-AACATGGTATATTAA-TGCT--T-------TACAAGCATAAAGAA--ATA---TA-TACA-gatg
blockSeqs : GGT ACATTG . . . TA . TTTTA . . T C A A . . . C . C C C . TA CG . A T GATA . . TAAAGAATA C . AT T TC CATACATAGA . . TCACTTGTA A . A . T A . TA . G A A G G TCAA G T . T . CT G A ATGTAATTG AT AACAC G C GGTATATGTGTC . C A T . A A TTTAAAAATAA G A ATT A . G TG A A T AG GA ATTGAGTT ACCG . G . A T TTTTTACATGTT . G ACC C G GCCTGTGCGGGTGAGCCGCA TT TAA TAC G CCGC C CATGGTATATTAA TTGA A C T AT G . . TATCTT A A . AG T GT TG G AC T AT A GGCT TG T . . . G . . A A . TTC GT GG A G CGGTC . T . G GGT A ATA A . T ATG G . T T T A C G A A C CACCTGCTTGT C . G . G A A . . A C T TGAACCTCAGACTT . T GC CG GT AATTA T A AC . . CC T . T G . T
blockSeqs : T CATCG . . . . . TG . . T . . . . . . . . C A . . T T . . T A . . ATTAC T . . G . G . . . . . A . T G . T . . A A . T C . . . . . . T A . T ATA . C CATGTGT . . . . . . C TATATAACTG . . T A . G T A G . . . CTT TGAT . . . G . CGT . G G T . CACATAAATGTGGAGC . CT AC . A . TTTC TTG A A C . G . . AA . . . A . TA . G . G A A . . . . A . . TC T G A G CGC . T . G A G GA . . . . C . T T A A C G . TATG C . . . G . A . . A C . . . T . . T TCA . . GT . . T
blockSeqs : . A . . TGATA . . . C . . . . . . . . . . . . . . . . . . . C . . . . . . G G . A AA . . . . . . T . . . T . . . . . AT . . . . . . CT . C . A . CCTATAGGAGAGCA . CC AC . G . TTG T . A . . . . . . G . . AT T . . C . . . . . . . A . . G . . . . . . A . . . C
blockSeqs : C . . . . . . . . . C . . . . . . NN . A . C . NNTGCGAGGGGAGC . CC T . T . GA
blockSeqs : . . . . . . A . N . N . CCCATGGGGAGC . CC C . G .
blockSeqs : . . . . . . T . A . T . TAACCGGGGC . C . . G .
blockSeqs : . . . . . . . . A . C . CCGGA . C . . G .
blockSeqs : . . . . . . . . A . T . CTCG . . . . G .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . . . . .
blockSeqCons : C*** ** CCCGGGGGAGC************** CTGG**********
originalCons : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGCC--ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-C-C--CCGTG---G-GG-GAGCC---GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AA---------TTNA-TGCT--TTGAAAACTACANGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
finalCons : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TTAGC---ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT-CCCCGGGGGAGC--------------GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AACTGG----------TGCT--TTGAAAACTACANGTATATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
Alignments
lowQualScore : 11111111111111111111111111
lowQualScore : 44444444444444444444444444 2222222222 1 1 1 11 11 44444 1 1 1 11 1 11 1 1 11 1 11111 11 1 222222222222 11 11 11 5555555555 11 11 444444444 22 1 1 4444444444 11 1 1 1 2 11 11 333333333 3333333 1 333333333333 1 1 1 1 2 333333333333333 1 1 111 1 11 1 11 11 333333333 1111 444444444444 111 55555555555555555555555555555 222 3333333333333333 11 111 11 1 1 2222222 1 33333 1 11 11 2 111 2222 11 1 11 222 11 1 1 1 1111 222222 11 4444444 1 1 1111 1 1111 1 111 222 1 444444444444 11 1 1 1 1 11 222222222222222 1 11 11 22 2222222 1 1 11 1 33333 1 1 11
lowQualScore : 22222222222222222222222222 1111111111 3 3 3 88 88 99999 3 3 7 6 7 7 3 88 3 6 88 6 1 3 3 99 77 3 7 3 88888 33 0 333333333333 6 33 33 2 33 3333333333 33 33 000000000 33 0 3 0 3 6 3333333333 33 0 0 3 3 0 0 11 8 8 8 8 8 0 8 11 5 3 222222222 66 1111111 0 2 444444444444 0 3 7 3 3 7 6 777777777777777 0 0 777 3 0 2 88 3 7 0 33 33 333333333 7777 3 3 44 6 3 222222222222 4 2 222 1 777 11111111111111111111111111111 777 777 666 4 55 4 4 6666666666666666 11 0 222 8 11 2 0 0 9999999 7 7 3 11111 3 22 88 6 88 6 777 7 8888 88 7 5 88 111 1 88 0 2 0 0 1111 222222 55 9 1 4444444 0 3 0 2 0000 2 8888 7 3 7 000 1 333 3 3 1 3 2 2 3 1 1 333333333333 2 0 33 0 0 2 0 3 0 33 3 2 7 444444444444444 3 7 00 55 00 7777777 3 3 55 3 33333 77 1 5 1 5 88 1
lowQualScore : .......................... .......... . . . .. .. ..... . . . . . . . .. . . .. . . . . .. .. . . . ..... .. . ............ . .. .. . .. .......... .. .. ......... .. . . . . . .......... .. . . . . . . .. . . . . . . . .. . . ......... .. ....... . . ............ . . . . . . . ............... . . ... . . . .. . . . .. .. ......... .... . . .. . . ............ . . ... . ... ............................. ... ... ... . .. . . ................ .. . ... . .. . . . ....... . . . ..... . .. .. . .. . ... . .... .. . . .. ... . .. . . . . .... ...... .. . . ....... . . . . .... . .... . . . ... . ... . . . . . . . . . ............ . . .. . . . . . . .. . . . ............... . . .. .. .. ....... . . .. . ..... .. . . . . .. .
lowQualScore : 77777777777777777777777777 3333333333 3 3 3 33 33 00000 3 3 3 7 3 3 3 33 3 7 33 7 0 3 3 33 77 3 3 2 55555 88 0 555555555555 5 88 88 5 88 2222222222 88 88 000000000 88 0 2 0 2 5 8888888888 22 0 0 2 2 0 0 00 0 0 0 0 0 8 0 00 0 8 000000000 55 5555555 0 5 888888888888 0 3 3 3 3 3 7 777777777777777 0 0 000 2 0 5 22 2 0 0 88 88 000000000 0000 3 3 66 7 3 222222222222 4 9 222 1 888 22222222222222222222222222222 999 444 000 0 55 0 0 9999999999999999 00 8 444 0 00 5 0 0 0000000 3 3 3 33333 3 00 33 7 33 7 777 3 3333 33 3 5 55 000 0 00 0 0 0 0 5555 222222 22 2 0 0000000 0 2 0 5 6666 0 3333 3 3 3 000 0 333 2 2 0 2 5 5 3 0 0 000000000000 5 8 88 0 0 5 0 2 0 88 2 5 3 000000000000000 3 3 33 77 77 7777777 3 3 77 3 33333 77 0 5 0 0 55 0
consensus : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TT--AGC-ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT---CC--C---C---G-----G-GGGAG-C----GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AAT-T-GGTGCT--TTGAAAAC--TACANGTAT-ATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
Reference ( family-172 ) : NAAGGATGAAGTGAAGTCTCCATATGCGC-GG---------------------CTGGGCCCTTTTTCATCACATT-ACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTT----CATAAAC-GCCACAAA-GAATGATTTCTGAAAACTTTTGATAGTTCCCTTTGTTATATTGT-CATG--TGGA-ATGCTGAAAAATCGACTGATTTCTAAACCTCATA--CCGGGCANTTTTC-GTCAAGG-TTTGTAATGTCTTCATTCNT-CATGAAATAATGATATAATAA---A-AGGAG--TGGGCGGGTCTA-AACAGAAT---GAAT--A-GACCGCA--TGCGAT--TCGCC--GTTTGCAT-----GATAAAT--AAACA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATAT-TTTTAAT-TTGA-TTTATATACTAAATATT-CACACAA-TT--AGC-ACAAA-A-TA-TATCC-CTATCTT-TCAAGA--ATATAAATGGAATGCGA---------TATTTTGATTGCATGTT---ATACCATGCCTGCAT-GTACGCCAGCATG----TATGTGT-TACATTT-TATA-ATAAATATA-TGTAATGTGTAAAA-TTAATTTTG-TGGATAAT-T---AAATAAC-GATACTAGT-GCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-TAGATTT----CATCTT-C-GC--TA-GCCAAGGG-TTTTC--------G--GGT-CCGCT---CCGCT---CC--C---C---G-----G-GGGAG-C----GGA--GTGGAC-CGAAA---C-CTTG--G-CTAGCG-AAC-T-GGTGCT--TTGAAAAC--TACANGTAT-ATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAAAG--ATAGA-TTTNNGT--GTTGGTAAAT--AAATTA-TAT-A-TCGAAG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGNCGGACAATGCA-TTCGAATCACGTG-TG-TA-TC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTANGT--CGG-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GTAAGGTGCTGGTGAAATTTTTCCCG-A-TTATTTTTTTAAAATAT-CGGCGATTTAACAATGTACGGNTATCGCTG---TACGAATTTTAAAAGTTTTTAATGATATNCAAACACAGCCT-GATCNTNTAACCGCA------TG-TGTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCCTATGAGAAATGCA-GC--TAATGAGGAAACCCCAAGCTTTGAA-CTCAGACTT-ATATA-TCGTTTGTGGCGAATTTATACGCCACGTGTAGCA-TTTAAA--TTCA-TAAAAGTACAAATG-TGA-TGAGCTGAATC-TTGTAAAT-----TTTAACATGAAANCAAAGAAAATNTATTTTTATTAAATATANTGGGGGCCGCCTAAGCANTGCCA
gi|1 : AAGGATCAAGTGAAGTCTCCATATGCGCTGGCCCCTTTTTACATTACTGCGCCTGGGCCCGCTTTCATTACATT-ACTACATAACTCCAAAACTAACTACA--CTAAAGTTAGGAATTTTT------ACAAACAGCCACAAAAGAATGAGT-CTGAACACTTTTGATAGTTCCCTTTCTTATATTGTGCATGCATGGATATGCTGAAAAATCGACTGATTTCTAAACCTCATGAGCCGGG-AGTTTTC-GTCAAGGGTTTGTAA-GTCTTTATTCCTTCATGACATAATGATATAATAA---ACAGGAGGATGGACGGGTCTAGAACAGAAT---GAATCTA-GACCGCGCCTGCGAT--TTGCC--GTTTGTAT-----GATAAATTTAAACAATTAGAACA---------AACGTCAACGTTGCCACACCTATTTTAATTCGATGTAACTTAAATGATATATAT-TTTTGATATTGA-TTTATATACTAAATATT-CACACGA-TT--AGCCACAGA-A-TAGTATCC-CTATCTCATCAAGA--ATATAAATGGAATTCGA---------TCTTTTGATTGCATGTCTGAATACCATGCCTGCAT-GTGCGGCAGCATG----TATG-GTATACATTTGTATA-ATAAATATA-TGTAATGTGTAAAAATTAATTTTG-TGGATAATAT---AAAT--C-AATACTAGT-GCATTT-CACC----GCAAAATGA-GTAAAACTATCA-TTTGT--TTT--AGAAAAA------C-CAGACTT----TATCTTGT-GCAGTA-GCCAAGGT-TTTTC--------G--GCTGCCACC---CTGCT---CG--C---CTGTG-----GCGGGAGTC----GGA--ATGGAC-CAAAA---C-CTTG--A-CTAGCG-AAT-TCAGTGGTGGTGAAAAAC--TACACGTAT-ATTTAA--ATAGTATACTACAGAA----TATCTAAATACAAATTTATCAAGAGTCATAGA-TTTAGGT--GTTG-TAAAT--AAATTA-TATAA-TCG-AG----AC--ACTTTTTTTAAAATCACAGAGACGTTGAAAAAGACTAGTATGAAGCCGGACAATGCACTTCAAATCACGTG-TGTTA-TCGGTCC-TTTTGATATGAGGCGAGAG-TTCACAGTATGTAATGG--GAAGTTCAAAATCTGGCTTTCCTAATTGGA-GTAAGGTGCT-ATGAAATTTTTCCCA-ATTTATTTTCTAAAAATATCCGGCGACTTAACAATAAGCGGTTAACGCTATTTTACAATTTTTAAAAGTTTTTAATGATATTCAAACACA-CCT-GATCCTGTAATCG-A------TGATGTCCATCGAATTTTAGTGTTTCTTGGGTG-ATAAAAAGTGTGCGCGGG-CTTAATGCCTATGAG-AATGCAGGCTGTAATGAGGAAA-CCCAAGCTTTGAA-CTTAGACTTAATATAGTCGTTTGTGGCGAA-TTATACGTCATATGTAGCA--TTAAA--TTCATTAAAAGTACAATTG-TGA-TGA--TGAAACATTGTAAGTGGTTATTTAACATGATAACAAAGAAAATGTATTTTTATTAAATATAGT-GGGGCCGTCTAAGCAATGCCA
gi|10 : aGATGT----CATCCT-C--C--TAAGTCAAGGG-TTCT------------GAT-CCGCC---CCGCT---CC--A---C---ATAAATG-TGGAG-C----GG---GTGGATAAGAAAT--T-CTTG--A-CTTGGG-AAtcat
gi|11 : aaaaaaaaatcctgattttatcttttcagtt---C-CTTG--G-CTAGCA-AA----GATGAT--C---AAAC--TACA---ATGATTTAA--CTAgatg
gi|11 : T----CATCTT-T-GC--TA-GCCAAGGG-Tgtgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcacccttggctagcgaagatat
gi|11 : tagttaaatcattgtagtttgaATCTT-C-GC--TA-GCCAAGGG-Tgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcacccttggctagcgaagatat
gi|12 : tagttaaatcattgtagtttgatcatctttgctagccaagggtgacgatgcacaatgtttctctttcactctgaaaaagaaacaccatgtatcgtcTCTT-T-GC--TA-GACAAGGG-TTTTC--------T--GGT-CCGCTG--CTACT---CC--CTA-T---A-----G-GAGAG-CA---GGA--GTGGAC-TGAAATACC-CTTGCCGCCTAGCG-AAat
gi|13 : tggatgtttggttgcAA------A-TAGATTTACCGCATCTT-C-AC--CA-GCCAAGGG-TT-----------A--GAT-CCCCT---CACCT---CTAAC---C---G-----G-G---G-C----GGATTGTAGAC---------C-CTCG--G-CAAGCG-AAgatg
gi|14 : aaaacttAACCGTA------TG--GTCCATCGAATTT--ATGTTTCTTGGGTT-AT-AAAAGTGTGGGCGGG-CTAAATGCTTATGAGAAATGCA-GC--T--TGAGGAAACCgacac
gi|15 : ATGTA-TTCAAATCACGTG-TG-TA-TC-GTCT-T----ATAGA--GCGAGAGATTCAAGGTAGGT--C-G-CGGAGTTC-AAATCTGGTTTCCATAA-TGGA-GT
gi|16 : T----CATCTT-C-GC--TA-GCCAAGGG-TTTTT-----------GGT-CCACT---CCACT---CC--C----------------GGA---------------------AAC---C-CTTG--T-CTAGCG-AA----GATGC
gi|17 : ----CATCTT-C-GC--TA-GCCAAGGG-Tcactggttat
gi|18 : T--AGC-ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAATGGAATGCGA---------TATgacgtacacgggtttctactaaccaccgtgtatcgggcaccctgctacgcgaaaga
gi|2 : ATGAAGTGCAGTCTCCATATGCGC-GG---------------------T--GGCCCTTTTTCATCG-----ACTACA-AACTC-AAAACTA-CTACATACTAAAGTTAG--ATTTTTTG---CATAAAC-GCCACAAA-GAATGATTTCTGAAAA-TTTTGATAGTTCCCTTTGTTAT--TGT-CATG--TGGA-ATGGTGAAAAATCGACTGATTTCTAAAT-TCATA--CCGGGCACTTTTC-GTCAAGG-TTTGTAAT--CTTCATT-TT-CATGAAATAATGATA-----A---A-AGGAG--TGGGCGGGTCTA-AACAGAATAAAGAAT--A-GACCGCA--TGCGATATTCTCC--GTTTG----------TAAAT--AAACA--TAGAACA---------AACGTCAAA-TT-CCACAC-TA-TTTAATTC-ATGTG----------TATATATATTTTAAT-TTGAGTTTATATATTAAATATT-CACACAAGTT--AGC-ACAAA-A-TA-CATCC-CTATCTT-TCAATA--ATATAAAT-GAATGCGA---------TATTTTG-TTGCATGTT---ATA-CATGCCTGCAT-GTACGCCAG------------------CATCT-TATA-AT-AATATATTGTAATGTGTAAAA-TTAATTTTGATGAATAAT-TTAAAAATAA---ATACTAGTGGCATTT-CACC--TTGCAAA-TGATGTAAAACTATCA-TTTTG--TTT--AGAAAAA------C--AGATTT----TNNNNN-N-NN--NN-NNNNNNNN-NNNNN--------N--NNN-NNNNN---NNNNN---NN--N---T---GCGA--G-GGGAG-C----GGA--ATGAAC-CAAAA---CGCTTG--G-CTAGCG-AAT-T--GTGCT--TTG-AAAC--TACACGTAT-ATTTAA--ATAGT-TA-TACA-AA----TATCTAAATACAA-TTTATCAAA----ACAGA-TTTGTGT--GTTGGTAAAT--AAATTATTAT-ATTCGAAG----AC--AC-TTTTTTAAAATCAC-GAGATGTTG--AAAGAC---TATGAAGGCG--TAATGTA-TTCAAATCACGTG-TG-TATTC-GTCT-T----ATAGAGGGCGAGAGATTCAAGGTAGGT--CGGTCGGAGTTC-AAATCTGGTTTCCATAA-TGGAGGT--GGGGCTAGTGAAATTTTTCTCATA-TT-TTTTTTTAAAATAT-CGGCGATTTAACA---TACGGGTATTGCTG---TACGAATTTTAAAAG-CTTTGATGATATTCAAACACAGCCT-GA
gi|3 : aTATAATAGGATA-AGGTG--AGGGCGGGTCTA-AACAGAA-----ATT--ACGAA-GCA--TGCGAA--TCGCCTCGTTTACATACATAGATAAAT--CAATA--CAGTACATCACTTGTAAAGGTCAA--TT-CCAC-C-TATTTTATCTCAATGTA----------TATATAT-TTTTAAT-TTCC-TATATATACTAAATATTGCACACAA-TTTCAA--ACAAA-ATTA-TTTCCTCTATCGT-TCACGACTATATAAATTGGATGCGA---------TATTTTGA-TAAATGTTA--ACACCATGCCTGCCTGGTACGCCAGCATGGGTATATGTGTCTACATTT-TAAACATAAATAGA-TGTGAAGTGTCAAA-TT-ATTTTACTGGGTGA--T---ATATAACTGCTAGTAAT-GCATTT-CACC--TTGC-AA-TGAT-T-AAACAGTCATTTTGT--GTT--GGAAAAT------CTTAAATTT----TATCTT-CGGC--TAGGCCAGGGGTTTTTC--------GT-GGT-GCACTACCCTGCTGCGCC--TGTGC---G-----G-GTGAG-CCGCAGGA--GTGGA--CGAAAAC-C-CCTT--G-CTAGCGCAAT-T-TCTGCT--TTGAAAAC--T-CAAG-AA-ATTTAAATATAGT-TA-TATA-TATCTTTATCTCAAT-C-A-TTCATTCAAAG---TAGATTTTTAGTTGGTTGGTAAATACAGATTAGTGT-A-TCGAAGGGCTACTGACTTTTTTTa
gi|4 : tacAAGGATGAAGTGAAGTTTCCTTATGTGC-------------------------TGGTCCCTTTTT----ACATTGACTACA-AACTC-AAAACTA-CTACA--CTAAAGTTAG--ATTTTTTTTTACATAAAC-GCCACAAA-GATTGATTTCTGAAAACTTTTGATAGTTCCCTTTGTT-TATTGT-CATG--TGGA-ATGCTGAAAAATCGACAGATTTCTAAACCTCATA--CCGGGCAATTTCCCGTCAAGG-TTTGTAATATCTTCATTCGT-CATGAAGTAATG---TAATAA---A-AGGAG--TGGGCGGGTTAA-AACAGAAT---GA-T--A-GACTGCA--TGCGAT--TTCCC--GTTTG---------GTAAAT--AACCA--TAGAACA---------AACGTCAA--TT-CCACAC-TATTTTAATTCGATGTA----------TATATA--TTCTAAT-TTGA-TTTAC-T-CTAAATATT-CACACAATTT--AGC-ACAAAGA-TA-TATCC-CT-TCTT-TCAAGA--ATATAAATGG-ATGCGAATGTAATTGTATTTTGATTGCGTGTT---A-A-CATGCCTGCAT-GTACGCCAGCATG----CATGTGT-TACATTT-TAttta
gi|5 : TCCATCGAACTT--ATGTTTCTTGGGTT-GT-GAAAGTGTGGCGGGG-CTAAATGCCTACGAGAAATGCA-GC--TAATGAGGAATCCTCATGC-TTGAACCTCAGACTT-ATATA-TTGTTTGTGGCGAATTTATATGCCA--TGTAGCA-TTTAAA---TCA-TAAAAGTACAAATGTTGA-TGAACTGAATC-CTGTAAAT-----TTGAACTTGAAAT--AAGAAAATTTATTTTTA-TAAATATATTGGGGGCCGCC--AGCATTGCCA
gi|6 : gtaacgtAATTT---AAGTTTTTAATAACATACAAACA--GTTGAGATTATCTAACAGCACCTGCTTG-TGCCTAT---------ATATTTCCAGATTTGAT-AAGATT-TGGGCGGGACCAAATGCCTTTGAAAATTTCA-GC--TAATGAGGAAACCCCAAGCTT---------------ATATA-CCGTTTGTGGCGAATGTGTGC---ACGTGTAAAAGTTTAAAAATT-A-TAGAAGTATAAATG-TGAATGAGTTGAATC-TTGTAAAT-----TTTAACATGAAACCAAAgttctcttcatcct
gi|7 : gaAAAGCA-TTTGAATCACGTGATA-TA-AT-ATTTGT----GTAGAG-----------CAAGTTACAT--------GAGTTC-AAA-CAGGTTTTCAGAA-TG-----AAGGTTCTGGTGAAATTCTTGCTG-A-TTATTTTTTTTTAATAT-CAGCGAT---GCAATGTACGGCTATCGCTG---TACGAAATTTAAAAGTTTTTAATAATATAC-AACACAGt
gi|8 : tcgaatacactctaattaaagttcatgacggtgaggtcgtgtttatgtgctACTAAT-ACATGTACATCATTTGTATA-C-AT-TAAAGTT-----TTTGTAGTTTGAAGAAAAAATTGAGT-TAGATTTTGATCATCTT-C-GC--TA-GCCAAGGG-TTTC------------GGT-CCACT---CCGCT---CC--C---C---AT----G-GGGAG-C----GGA--GTGGAC-CGAAAC--C-CTTG--G-CTAGCG-AAttt
gi|9 : taatgtaaaagataattagtgcttgtttg----CATCTT-C-GC--TA-GTCAAAGT-TTTTTTTTTACATGTTGGT-CCATT---TTGCT---CC--T---C---G-----G---------------------AC-CGAAAAC-C-CTTT--G-TTAGCG-AACAT-GGTATA--TT-AATGCTTTACAAGCAT-AAAGAA--ATA---TA-TACA-gatg