lowQualScore : 111111111 11111111111111111111111111111111111111111111111111111111 1111111111111 111111111111111 111111111111111111111111111111111111111111111111111 111111111111111111111111111111111 11111111111111111111111111111111111111111111111
lowQualScore : 000000000 1 1 77777777777777777 111 666666666666 111111111 111 1111 666666666666666666666666666666666666666 22 1 22222 1111 22222222222222222222222222222222222222222222222222222222 1 111111 0000000000000 4444 44444444444444444444444444444444 2222 1 333333 1 1 1 88888888888888888888 1111 22222 333 1 1 11 1 222222222222222 1 11 888888888888888888888888888888888888 11 1 1 555555555555 1 333 1111111 111111111111111111111111111111111111111111111111111 11 22222222222 33333333333333333333333333333 1111 1 44444 222222 22 22222 11 5555555555 1 1 4 444444 11 4 1 4 000000000000000000000000000000000 1 00000000000000000000000000000000000000000000000 4444444444444 11 11111
lowQualScore : 333333333 6 5 7 11111111111111111 2 333 8 8 33 00 8 8 999999999999 777777777 1 66 777 5 2222 4 8 000000000000000000000000000000000000000 33 0 3 8 0 44444 7777 8 77777777777777777777777777777777777777777777777777777777 3 2 0 555555 0 3 6666666666666 4444 2 44444444444444444444444444444444 8888 4 555555 0 0 3 0 0 66666666666666666666 7777 88888 2 888 0 3 88 2 7 3 4 555 666666666666666 3 88 2 888888888888888888888888888888888888 44 55 0 6 99 0 555555555555 0 111 8888888 555555555555555555555555555555555555555555555555555 22 33333333333 6 88888888888888888888888888888 2 2222 0 8 11111 777777 1 8 99 0 88888 6 6 22 6 8888888888 3 3 0 7 444444 7 88 0 6 3 0 8 2 3 777777777777777777777777777777777 0 44444444444444444444444444444444444444444444444 5 6 3 1 2222222222222 77 44444 5 1
lowQualScore : ......... . . . ................. . ... . . .. .. . . ............ ......... . .. ... . .... . . ....................................... .. . . . . ..... .... . ........................................................ . . . ...... . . ............. .... . ................................ .... . ...... . . . . . .................... .... ..... . ... . . .. . . . . ... ............... . .. . .................................... .. .. . . .. . ............ . ... ....... ................................................... .. ........... . ............................. . .... . . ..... ...... . . .. . ..... . . .. . .......... . . . . ...... . .. . . . . . . . ................................. . ............................................... . . . . ............. .. ..... . .
lowQualScore : 000000000 0 0 0 55555555555555555 5 000 0 0 33 55 0 0 444444444444 888888888 1 22 444 0 1111 2 8 222222222222222222222222222222222222222 33 7 3 0 8 44444 8888 2 55555555555555555555555555555555555555555555555555555555 0 5 0 888888 2 0 2222222222222 8888 5 88888888888888888888888888888888 0000 5 888888 0 0 0 0 8 66666666666666666666 0000 00000 2 888 0 3 33 0 7 0 0 555 000000000000000 3 55 5 888888888888888888888888888888888888 00 88 0 8 00 0 888888888888 0 555 5555555 888888888888888888888888888888888888888888888888888 88 33333333333 7 88888888888888888888888888888 5 5555 6 0 00000 888888 4 0 00 2 77777 7 7 00 0 3333333333 3 3 0 3 777777 7 33 0 0 3 0 0 0 2 555555555555555555555555555555555 0 55555555555555555555555555555555555555555555555 0 4 0 4 2222222222222 66 33333 0 8
consensus : TGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATANTAAA-TACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACC--GACGAA----ACTTCGAGA---------GATCGAGAGNTTC-G-AG-AGATCGA----AAGTCGAGTCANATC-------CGGAAATTAAA----NG-T---CC--GACCATT-ACGG-TTCGGATTTT-ACAGTAACCGGAG---ATGTT---TACCAACATCCTG-ACAT---TT-----GATACG---------------------T--G----TTTTTCNTATTTCTCGG-TAA-A--T-CGACNAA-TC-A------C-GAACTTCA--TCNTGCAT----NA---ATA----AAAAAATA-A---T-NTTTGAAGGTTT---ATGTATTTATT--TGT-TCTC-TTT-TCGTG-CTGAGATACATGT-------A-----ACGTG----TA-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCGA--CATCACNAANAAAAAAAANGANGNAGCGGAG------GCAGAGTCGCTTTACACAAAGAA-TAAACGTTTCAAATTTGACANTCTCTAGGTTCGGNNATACCTCTAA----------------ATTATT-TCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTC---T--CCGC--AAA-CGAN--CAT-ANA---TTTTATCCAC----------A------GT-CGATTATTACNCGGACCNTAAA-AACA-AATGC-NCAGGCGAGAGGATTGA-AATCGACC--AATTAAA----CA----A-----T---TANCTGTATCCACCCTATC-AAGGNAGCACGGGC---TGTGTGTTACCTTT-GTTAAACCTTTAATTGCCT--TCGCCACGCANCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG--ACGNTNTGTAT--ACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTTGAGAGATCGAGAACTTTCC--AGAG-----ATCGAA--GTTCGAGAGATCGAG-AGTGAAT-T--GCT---T-A-T-CA----GAG-AAAAAAAT-CG------GGGACCGTGACTTCACTTCGAGAGATCAAGAACNT---T-CGAGTTATCGA-----GAGTCACCTGTACTT
Reference ( gi|1 ) : TGTATT---TCTGATTAAAATCATTTTCATATGGTTAACTG------ATAGTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACAAA----ACTTCGAGA---------GATCGAGAGGTTC-G-AG-AGATCGA----AAGTCGACTT-AATC-------CGGAAATCGAA----TG-T---CC--GACCATA-ACGG-TTCAGATTTT-ACAGTAACTGGAA---ATGTT---TACCAAC-----G-ACAT---TTA----GATACG---------------------T--G----TTTTTCTTATTTCTCAG-TAA-A--T-TGACTAA-------------GAACTT-A--TCGTGCAT----AA---ATA----AGAAAATAAA---T-ATTTGAAAGTTT---TTATGTTTATT--T-T-TCTC-TTT-TAGTG-CTGAGA---GTG--------A-----ACGTG----TA-----TTTACAAAACGTATTTCATTAAAACGT-TAC-ACTGTCGCAA--CATCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGCAGAGTCGCTTTACACAAAGAA-TAAACGTTTCAAATTTAACAGTCTCTAGAT-CGATC-TATCTCTAA----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTTTCGCATG-GTC---T--TTGC--AAA-CAAA--CAT-ACA---TTTTATTCAT----------A------GT-GGATCATTGCGCAGATCCTAAACAGCACCATGC-TCAAGTGAGAGAAGTGATAATTGACC--A-TTAGA---TCA----A-----T---TACCTGTGTCCACCCTATC-AAACGGGCACGGGC---TGCGTGTTACCTTT-GTTAAACCTTTAATTGGCA--TCGCCACGCTCCTCTCGGGTGTCCA----------GGTAAG-TCCAAGCG-GAAATAATATAGACACTTTGTTG-TATGTTTTGTAT--ACTC-ACGACCACTTCGAAAGATCGAGAGTGAAAAACAATGAAAT-ATGTTTTTACGGGACCCAAA-TTCACTTCGAGAG-TCGAGAACTT--CGGAGAG-----ATCGAACTGTTCGAGAGATCGAG-AGTAAATTT--GCTTAGTTATTCTA----GAG-AAAAAAAT-CG------GGGACCGGGACTTTACTTCGAGAGATC--GAAGGT---T-CGAGTTATCGA-----GAGTCACCTGTATTT
gi|19 : TGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATATTAAACTACTGCTGACTCTC-GAT-AACTCAAATTTCAA-
gi|9 : TG------ATAGTA-----CAGGTGACTCTC-GAT-AA
gi|24 : TGAAATACAGGTGACTCTC-GAT-AACTCGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccattacatttaagattttacagtaactggaaatgtttaccaacaaagttgatatgtt
gi|6 : TACAGGGGACTCTC-AAT-A-------GTTCAA-GC-GACCTTGAGAAA----ACTTAAAGT---------GATCAAGA-GTTC-A-AG-AGATCGA----AAAACAAGTCAAATT-------TAGAAATTAAAGGTTTG-C---GT--GACCATT-ATGG-TTCGGATTTA-ATAGCAACCGGGGTGTATATT---TA-CAACATCCTG-GCATTGCTTC----GAGATGT--------------------T--G----TCCTTCGTATTTTTAGG-TAA-A--TGTCACGAATTCAACAACGCT-GAACTTCA--TCTTGAAT----TAGCGATA----AAAATAT------T-TTTTAAAGGTTT---ATGTATTTATT--TAT-TCTT-TTC-TCATA-TTAAGATACATGT-------ACATATACATGTACATA-----TTTACAAGACAAATTTC-TCAAAg
gi|14 : GCGACTTTCTGATTAAGTTGAAGTTCAAGGG-GACCAAGA-GAA----ACTTCTAG----------GA-------GTAC-GCAGAAAATCGA----AAGTCGACTC-CATCTCATTCACGGAAATCGAA----TGTT---CC--TACCATT-ATGGCTCCAGATTc
gi|3 : AGTTCAA-TGCGACC----C--------CTTCGAGAACGTTTAGTGATCAAGAGTTTCCA-AG-AGATCGAAAACAAGTCCAATT-TAT-----------GAATTAAA----GG-TTTGCCGTGACCATT-ATGGTTTCGGATTTTAATAGCAACCGG-G---GTGTCATATACAAACATCCTG-GCAT---TTGCTTCGAGATG---------------------TTGG----TCCTTCGTATTTTTAGG-TAA-ATGT-CAACGAAGTTCAATCACGCTGAACTTCATTTCTTGCATTCGCTG---ATA------AAAAT--A---T-TTTTAAAGGTTT---ATGTATTTATTTAT-T-TCTT-TTTCTCATGATTAAGATACATGTAGCATATA-----ACATG----TACATATTTTACAAGACACATTTC--TCAAACATATACAACAGTTTTAAACCATCACTAA
gi|4 : TTTAC-GG-GACC----CTAATTC-ACTTCGAGA---------GATCGCCCGTTTC-T-CG-AGATCGA----GAGTtgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaatattctcaaaattactgtcacatgtgtcgaagtccaaacgaagtcattcaaatttttatctacagtcgaatctagggactataaaaaacaaaagcgccaggcgagagggttgaatcaccaataaagcaatta
gi|5 : caaaacattttctcaaaatcatcgtctcaaaatatatcttgcatggtctcggccaaaacaatcataaattttattcatacacgtagtcgattatactcagaacctatgcaacgcattgctcaggtgagaagtgataattgaccaattaaactatcaaaatcgttacctgcgtccaccctatcaaagcagcgcgggcagacgtttcctttgtaaactttgaattgccttcgccacgcacccctcgtgcgtccaggtaagtccaagcgcggaataattagacctttgttgatgttatgtatactctatgaccacttcgagagatcgagagtgaaaaacaatgaaatatgtG-GACC----CAAAGTTTACTTTGAGA---------GATTGA-AAGTTC-A-AG-AGATaaatttgcttacttatatagagaaaaaaaatcgggaccgggacttcacttcgagagtc
gi|2 : aaagcacaagtggtggattgaattgaccaattaaacaattaactatccatccaacaaggtgatgtgtcatctatagaaacacctaattaacacatcccagcaagtcccaggcatttactgtgaggaaggtaaggtccaagaaaaaataactacacacttcattgatacagtgtgtatgctctaccaccacttcagggaatcgagggtgaaaaacaatgaactaatgttttact----ACTTCGAGA---------GATCGAGAGtctatcaaagttatatatatagagaaaaaaatatgagctgtgatttcactttgagaaatcgagaacttttttaaaagagatcgaagtttgagccatggagagttacctgaactttttgccagtgtagtgtataaacatcattatgg
gi|4 : tacgtttttttcttatttctcaggtaattgactaagaactttatcgtgcataaataagaaaataaattatttgaaagtttatattattttatttgtgtttcttttagtgcgagatgaacatgtatttacaaaacgtgtttcacaaaacgttacactgtcgcaacaataccaaaaaaaaaaaagataaagcagaggcagagtcgctttacacaaagaataaacgtttcaaatttaacagtctctaggttcgagcatatctctaatttattgtcctcataaattattgtctcaaaatcatcgtttcaaacttactctcgtatggtcctcgcaaaacgatcatacatttttttcatgcacgtacgtagtcgattatgcacagatccaaagcaatgctcaagtgtgaagtgataattgaccaattaaaccattaaatccttacctgtgtccaccctatcaaagcagcacgggctgcgtgttacctttgtaaacctttaattgcctttgccacacttctctcgggcgtccaggcaagtccaagcggaaataattagacactttgttgactttgtataaactctacgacc----ACTTCGAGA---------GATCGAGAGtgaaaaacaatgaaatatgttttacgggacccaaattca
gi|18 : caaaacattttctcaaaatcatcgtctcaaaatatatcttgcatggtctcggccaaaacaatcataaattttattcatacacgtagtcgattatactcagaacctatgcaacgcattgctcaggtgagaagtgataattgaccaattaaactatcaaaatcgttacctgcgtccaccctatcaaagcagcgcgggcagacgtttcctttgtaaactttgaattgccttcgccacgcacccctcgtgcgtccaggtaagtccaagcgcggaataattagacctttgttgatgttatgtatactctatgacc----ACTTTGAGA---------GATCAAGAACTTT-C-CG-AGATTGA----AAGTCtgaaaaacaatgaaatatgttttacgggaccctaattcacttcgagagatcgcccgtttctcgagatcgagagtaaatttgcttacttatatagagaaaaaaaatcgggaccgggacttcacttcgagagtc
gi|13 : caaattgtgccaccctatgctatagagaaaaaaaaatcaagaccgtgatttc----ACTTTGAGA---------GATCAAGAACTTT-C-CG-AGATTG-----AAGTCcgagtca
gi|16 : gcaaattgtgccacctatgctatagagaaaaaaaaaaaatcaagaccgtgatttcGTTC-A-AG-AGATCGA----AAGTCAAGTCAAATC-------TGGAATTTAAA----GG-T---T------------TGG-TTCAGA-TTC-ACATTA--TG------ATGT---------AC-----GTACAT-----------GTACG---------------------T--A----TTTcgagtcactgcatgagagtcgcccatatctagaaccctacatt
gi|8 : a--GACCATTTACGG-TTCAGATTTT-ACCGTAACCGGAA---ATTGT---TATCAAC-----G-ACAT---CTA------TACGTTTTGTTTTTGTTTTTTTTTTT--GGTTTTTTTTCTTATTCCTCAGGTAATA--T-TGACTAA-------------GAACTTTA--TCGTGCAT----AA---ATAAAATAAAAAATACATGTT-ATTTGAAAGTTC---ATATATTTATT--TGT-TCTCTTTT-TAGTG-CTGAGA----TA--------A-----ACGTG----TAT----TTTACAAAACACGTTTCA-CAAAACAT-Tacaagaccttgtacatta
gi|9 : --GACCATT-ACAT-TTAAGATTTT-ACAGTAACTGGAA---ATGTT---TACCAAC-----A-AAGT---T------GATATG---------------------T--tt
gi|2 : tgatagtacaggtgactctcgataannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTACG---------------------T--T----TTTTTCTTATTTCTCAG-GTA-A--T-TGACTAA-------------GAACTTTA--TCGTGCAT----AA---ATA----AGAAAATAAA---TTATTTGAAAGTTTATATTAT-TTTATT--TGTGTTTC-TTT-TAGTG-C-GAGA----TG--------A-----ACATG----TA-----TTTACAAAACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCAA--CAATACCAAAAAAAAAAAAGATAAAGCAGAG------GCAGAGTCGCTTTACACAAAGAA-TAAACGTTTCAAATTTAACAGTCTCTAGGTTCGAGCATATCTCTAATTTATTGTCCTCATAAATTATTGTCTCAAAATCATCGTT-TCAAACT-TACTCTCGTATG-GTC---C--TCGC--AAAACGAT--CAT-ACA---TTTTTTTCATGCACGTACGTA------GT-CGATTAT-GCACAGATCC--AA-AGCA--ATGC-TCAAGTGTGA--AGTGATAATTGACC--AATTAAA---CCATTAAA-----TCCTTACCTGTGTCCACCCTATC-AAAGCAGCACGGGC---TGCGTGTTACCTTT-GT-AAACCTTTAATTGCCT--TTGCCACACTTCTCTCGGGCGTCCA----------GGCAAG-TCCAAGCG-GAAATAAT-TAGACACTTTGTTG----ACTTTGTATAAACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCAt
gi|15 : TGAGA----TG--------A-----GTGTG----TA-----TTGACAAGACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCGA--CAT-ACAAACAAAAAAAATAAAGCAGAGGAA---------GAGTCGCTTTAAACAAAGAA-TAAACGTTT
gi|7 : AGTCGCTTAACACAAAGCACTAATTCTTATAAAT--GATATTTTCT-----TGGCA-TACCTCTAG----------------ATTAT---------------ATTCTCAAAAT-TACTGTC-CATT-GTCAAGT--C--C--AAA-CAAGT-CATCAAA---TTTTATCTAC----------A------GT-CGA--ATT-CTAGGACTATAAA-AACA--AAGC-GCAGGCGAGAGGGTTG--AATC-ACCCAA-CTAAA----CA----A-----T---TAAC--AATCCACTCCA-C-AAGGAAACACAGGCAAAT-TGTGCCACCTAT-GCT
gi|4 : aacaaagttttaccatcactaattatacacaaagcacaatcattacaatttcaAA----------------AACATTTTCTCAAAATCATCGT-CTCAAAATATATCTT-GCATG-GTC---T--CGGCCAAAA-CAAT--CAT-AAA---TTTTATTCAT----------ACACGTAGT-CGATTAT-ACTCAGAACCTATGCAACGCATTGC-TCAGGTGAGA--AGTGATAATTGACC--AATTAAACTATCA----AAATCGT---TACCTGCGTCCACCCTATC-AAAGCAGCGCGGGC---AG-ACGTTTCCTTT-GT-AAACTTTGAATTGCCT--TCGCCACGCACCCCTCGTGCGTCCA----------GGTAAG-TCCAAGCGCGGAATAAT-TAGAC-CTTTGTTG--ATGTTATGTAT--ACTCTATGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCTAA-TTCACTTCG--------------------AGAG-----ATCGCCCGTTTCTCGAGATCGAG-AGTAAATTT--GCTTACTTA-TATA----GAGAAAAAAAAT-C-------GGGACCGGGACTTCACTTCGAGAG
gi|3 : cTTCTCAAAAT-TACTGTCACATGTGTC---GAAGTCC--AAA-CGAAGTCAT-TCAAATTTTTATCTAC----------A------GTCGAATC--TAGG--GACTATAAAAAACAAAA-GCGCCAGGCGAGAGGGTTG--AATC-ACC--A-ATAAA---GCA----A-----T---TAtc
gi|5 : agttcaatgcgaccccttcgagaacgtttagtgatcaagagtttccaagagatcgaaaacaagtccaatttatgaattaaaggtttgccgtgaccattatggtttcggattttaatagcaaccggggtgtcatatacaaacatcctggcatttgcttcgagatgttggtccttcgtatttttaggtaaatgtcaacgaagttcaatcacgctgaacttcatttcttgcattcgctgataaaaatatttttaaaggtttatgtatttatttatttctttttctcatgattaagatacatgtagcatataacatgtacatattttacaagacacatttctcaaacatatacaacagttttaaaccatcactaatgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaataGC-ACAAGTG-GTGGATTGA--ATTGACC--AATTAAA----CA----A-----T---TAACTAT--CCATCCAA-C-AA---------GGT---GATGTGTCATCTATAG--AAACACCTAATTAACACATC-CCA-GCAAGTCCCAGGCATTTACTGTGAGGAAGGTAAGGTCCAAGAA-AAAATAAC-TACACACTTCATTGATACAGTGTGTAT--GCTCTACCACCACTTCAGGGAATCGAGGGTGAAAAACAATGAACTAATG-TTTTACTGGACCCAAAGTTTACTTTGAGAGATTGA-AAGTT--C-AAGAGATTCTATCAAA--GTTATATATATAGAGAAAAAAATATGAGCT--GTGATTTCACTTTGAG-----AAAT-CG------------AGAACTTTTTTAAAAGAGATC--GAA-GT---T-TGAGCCATGGA-----GAGTTACCTGAACTT
gi|20 : aaaGC-ACAAGTG-GTGGATTGA--ATTGACCA-A-TTAAA----CA----A-----T---TAAC--TATCCATCCtttgccagtgtagtgtataaacatcattatgg
gi|21 : aacaaaaataaa-----T---TACCTGTATCCACCCTATCTAAGCAG-CACGGGC---TGTGTGTTACCTTT-G-TAAACCTTTAATTGaacaagg
gi|18 : -TTCACTTTGAGAGATCAAGAACTTTCC---GAG-----ATTGAAA-GTCCGAGcc
gi|13 : caaattgtgccaccctatgctatagagaaaaaaaaatcaagaccgtgat-TTCACTTTGAGAGATCAAGAACTTTCC---GAG-----ATTGAA--GTCCGAGtca
gi|2 : gcaaattgtgccacctatgctatagagaaaaaaaaaaaatcaagaccgtgatTTCGAGAGATCGAG-AGTGAAtcactgcatgagagtcgcccatatctagaaccctacatt
gi|4 : tacgtttttttcttatttctcaggtaattgactaagaactttatcgtgcataaataagaaaataaattatttgaaagtttatattattttatttgtgtttcttttagtgcgagatgaacatgtatttacaaaacgtgtttcacaaaacgttacactgtcgcaacaataccaaaaaaaaaaaagataaagcagaggcagagtcgctttacacaaagaataaacgtttcaaatttaacagtctctaggttcgagcatatctctaatttattgtcctcataaattattgtctcaaaatcatcgtttcaaacttactctcgtatggtcctcgcaaaacgatcatacatttttttcatgcacgtacgtagtcgattatgcacagatccaaagcaatgctcaagtgtgaagtgataattgaccaattaaaccattaaatccttacctgtgtccaccctatcaaagcagcacgggctgcgtgttacctttgtaaacctttaattgcctttgccacacttctctcgggcgtccaggcaagtccaagcggaaataattagacactttgttgactttgtataaactctacgaccacTTCGAGAGATCGAG-AGTGAA------------------A----AAC-AATGAAATATGTTTTACGGGACCCTAA-TTCACTTCGAGAGATC--GCCCGTTTCT-CGAG--ATCGA-----GAGTaaacaatgaaatatgttttacgggacccaaattca
gi|18 : caaaacattttctcaaaatcatcgtctcaaaatatatcttgcatggtctcggccaaaacaatcataaattttattcatacacgtagtcgattatactcagaacctatgcaacgcattgctcaggtgagaagtgataattgaccaattaaactatcaaaatcgttacctgcgtccaccctatcaaagcagcgcgggcagacgtttcctttgtaaactttgaattgccttcgccacgcacccctcgtgcgtccaggtaagtccaagcgcggaataattagacctttgttgatgttatgtatactctatgaccacA----GAA-AAAAAAAT-CA------AG-ACCGTGATTTCACTTTGAGAGATCAAGAACTT---TCCGAG--ATTGA-----AAGTCaaatttgcttacttatatagagaaaaaaaatcgggaccgggacttcacttcgagagtc
gi|13 : caaattgtgccaccctatgctatagA----AAA-AAAAAAAT-CA------AG-ACCGTGATTTCACTTTGAGAGATCAAGAACTT---TCCGAG--ATTGAAGTCCGAGTCA-CTGCATcgagtca
gi|24 : gcaaattgtgccacctatgctatagagaT---T-CGAGTTATCGA-----GAGTCACCTGTATTTgagagtcgcccatatctagaaccctacatt
gi|19 : T---T-TGAGTTATCGA-----GAGTCAGCAGTAGTTcag
gi|9 : tgtattgcttttgtgaactcattatcatgcaactaggtgcaaacaatattaTTATCGA-----GAGTCACCTGTACtttcaa
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TCTTATTTTTAGATATAAATTGACTTGCTTTTGACAACACGGAACTTTTTCTCGCATAGATAAAGAGACATTCTAAAGTTAACATATTTGTTTGGGTTTTTTCCTCATGTTAAGATAAACGTAATGCATACATGTATGTATTCACAAGAGAAATTTC
Unaligned ( gi|11 ): CAACACGGAACTTTTTCTCGCATAGATAAAGAGACATTCTAAAGTTAACATAATTTTGTTTGGGTTTTTTTTCCTCATGTTAAGATAAACGTAATGCATACATGTATGTATTCACAAGAGAATTCATTTTCCACATGC
Unaligned ( gi|12 ): CAACACGGAACTTTTTCTCGCATAGATAAAGAGAATTCTAAAGTTAACATATTTTGTTTGGGTTTTTTTCTCATGTTAAGATAAACGTAATGCATACATGTATGTAATTCACAAGAGAATTCATTGTTCCACATGC
Unaligned ( gi|17 ): CTGTCACTAACTATACACTGTACAAGCATAATTAATCGTCACAATTCCCCGTAGCTTTAAGCACACGTTCTACTAAGCAGCAATGTTTCCTTGGCAATGTCT
Unaligned ( gi|22 ): TCACATTATGATGTACGTACATGTACGTATTTACAAGACCTTGTACATTACGAC
Unaligned ( gi|23 ): TAAGCCCAAATGTCCAAAAACTGCTGATAAAATTACTAATAAA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 22 222222 2 1111 666666 4444444444 1 111 11 2222222 3333333333 1111 111 33333 111111 8888888888888888888888888888888888 11 99999999999999999999999999999999999999999 11111 1111 2222 1111 222 11 9999999999999999999999999999999999 1111 11111 222 1 11 3333333333333333 1 11 666666666666666666666666666666666 22222222 44444444444 2222 11 1111 3333333333333 11 22222 11111 2222 11 22 333333 111 1111111 22 111 4444444444 1 1 1 1111 1 1 1 0000000000000000000000000000000000000000000000000000000000000000 22222 1 666666666666666666666666666 22222
lowQualScore : 000 77 2 4 2 999999 1 0 8 8 0 0000 000000 0 9999999999 3 4 555 8 6 44 6666666 1 8 2222222222 5 0 5 5 1 8 4444 444 5 66666 999999 0000000000000000000000000000000000 1 55 99 6 66666666666666666666666666666666666666666 6 77 1 33333 5 2222 2 8888 1 5555 1 1 0 1 5 77 5 333 5 33 5 5 9999999999999999999999999999999999 0000 77777 2 444 8 0 2 33 6 1 1 11 9999999999999999 1 8 6 1 1 22 1 4 888888888888888888888888888888888 3 44444444 666 0 8 1 3 8 00000000000 8 0000 99 1 8 7777 1 7777777777777 44 99999 1 00000 6 5555 66 1 8 00 22 5 1 5 000000 777 1 999 3 8 7 6666666 6 11 111 4 2 2 55 3333333333 0 0 0 3 2 4444 11 1 3 0 0 0 1 7 7777777777777777777777777777777777777777777777777777777777777777 88888 8 0 0 7 1 777777777777777777777777777 1 00000
lowQualScore : ... .. . . . ...... . . . . . .... ...... . .......... . . ... . . .. ....... . . .......... . . . . . . .... ... . ..... ...... .................................. . .. .. . ......................................... . .. . ..... . .... . .... . .... . . . . . .. . ... . .. . . .................................. .... ..... . ... . . . .. . . . .. ................ . . . . . .. . . ................................. . ........ ... . . . . . ........... . .... .. . . .... . ............. .. ..... . ..... . .... .. . . .. .. . . . ...... ... . ... . . . ....... . .. ... . . . .. .......... . . . . . .... .. . . . . . . . ................................................................ ..... . . . . . ........................... . .....
lowQualScore : 555 55 5 0 5 555555 0 0 0 0 8 5555 000000 2 8888888888 2 2 666 0 0 44 0000000 0 0 5555555555 7 4 7 7 4 0 8888 000 0 44444 000000 0000000000000000000000000000000000 0 88 22 7 66666666666666666666666666666666666666666 3 99 0 11111 7 1111 3 4444 0 0000 7 4 6 4 7 99 7 111 7 66 7 7 6666666666666666666666666666666666 6666 55555 2 888 0 0 0 88 5 0 0 77 3333333333333333 4 0 0 4 4 55 0 0 555555555555555555555555555555555 2 00000000 222 8 0 0 2 0 66666666666 0 0000 00 0 0 0000 4 0000000000000 22 22222 4 11111 7 1111 77 4 7 66 11 0 4 7 777777 555 0 666 9 7 5 2222222 7 22 000 0 5 5 00 8888888888 0 0 0 2 0 8888 22 0 2 0 0 0 0 3 5555555555555555555555555555555555555555555555555555555555555555 00000 2 8 6 0 0 444444444444444444444444444 4 00000
consensus : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACGAAACTTCGAGA---------GATCGAGAG-TTC-G-AG-AGATCGAAAGTCGAGTCAAATC-------CGGAAATCGAAGG-T---CCG----ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACATT----T-GATACG---------------------T-G----TT----TTTCTTATTTCTC-GGTA--A-AT-----CGA---CT----------AA--------CAC-G---AACTTTAT--CTCGCATA----GATAA-AA----AAATA-N--TNTT---TGAAAGTTTATAT-A--TTT-ATTTG--T-TCTCTTT--TC-GTG-CTGAGATA-------------CATG-------TA-----ACGTG----TA-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAAAAAAA-AAAGCAGAG------GCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTC-A--TCCGC--AAA-CGA--T-CAT--AAA-TTTT----ATCCAC------A------GTCGATTAT-TGCNCGGACCCT-A-AA-AACAA-AT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAAGGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA-CG-----TTC--GAGATCGAGAGTAAATTTGCTTA-----T-----C-AGAGA----AAAAAAATC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTT------------TCCG-AGTT------ATCGA-----GAGTCACCTGTACTT
Reference ( family-162 ) : TGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATANTAAA-TACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACC--GACGAAACTTCGAGA---------GATCGAGAGNTTC-G-AG-AGATCGAAAGTCGAGTCANATC-------CGGAAATTAAANG-T---CCG----ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAG---ATGTT---TACCAACATCCTGACATT----T-GATACG---------------------T-G----TT----TTTCNTATTTCTC-GGTA--A-AT-----CGA---CN----------AAT-------CAC-G---AACTTCAT--CNTGCATN----AATAA-AA----AAATA-A--TNTT---TGAAGGTTTATGT-A--TTT-ATTTG--T-TCTCTTT--TC-GTG-CTGAGATA-------------CATG-------TA-----ACGTG----TA-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCGA--CATCACNAANAAAAAAAANGANGNAGCGGAG------GCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTGACANTCTCTAGGTTCGGNNATACCTCTAA----------------ATTATT-TCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTC----TCCGC--AAA-CGA--N-CAT--ANA-TTTT----ATCCAC------A------GTCGATTAT-TACNCGGACCNT-A-AA-AACAA-AT-GC-NCAGGCGAGAGGATTGA-AATCGACCAATTAAA-C------AAT---TANCTGTATCCACCCTATCAAGGNAGCACGGGC---TG-TGTGTTACCTTT-GTTAAACCTTTAATTG-C-CTTCGCCACGCANCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGNTNTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTTGAGAGATCGAGAACTTTCCAGAGATCGAA--GTTCGAGAGATCGAGAGTGAA-TTGCTTA-----T-----C-AGAG-----AAAAAAATCGGGGACCGTGACTTCACTTCGAGAGATCAAGAACNT------------T-CG-AGTT------ATCGA-----GAGTCACCTGTACTT
gi|1 : TGTATT---TCTGATTAAAATCATTTTCATATGGTTAACTG------ATAGTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACAAAACTTCGAGA---------GATCGAGAGGTTC-G-AG-AGATCGAAAGTCGACTTA-ATC-------CGGAAATCGAATG-T---CCG----ACCATA-ACGG-TT-CAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAAC-----GACATT----TAGATACG---------------------T-G----TT----TTTCTTATTTCTC-AGTA--A-AT-----TGA---CT----------AA------------G---AACTT-AT--CGTGCATA----AATAA-GA----AAATA-AA-TATT---TGAAAGTTTTTAT-G--TTT-ATTT---T-TCTCTTT--TA-GTG-CTGAGA----------------GTG--------A-----ACGTG----TA-----TTTACAAAACGTATTTCATTAAAACGT-TAC-ACTGTCGCAA--CATCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGAT-CGATC-TATCTCTAA----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTTTCGCATG-GTC----TTTGC--AAA-CAA--A-CAT--ACA-TTTT----ATTCAT------A------GTGGATCAT-TGCGCAGATCCT-A-AACAGCACCAT-GC-TCAAGTGAGAGAAGTGATAATTGACCA-TTAGATC------AAT---TACCTGTGTCCACCCTATCAAACGGGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-G-CATCGCCACGCTCCTCTCGGGTGTCCA----------GGTAAG-TCCAAGCG-GAAATAATATAGACACTTTGTTGTA--TGTTTTGTATACTC-ACGACCACTTCGAAAGATCGAGAGTGAAAAACAATGAAAT-ATGTTTTTACGGGACCCAAA-TTCACTTCGAGAG-TCGAGAACTTCGGAGAGATCGAACTGTTCGAGAGATCGAGAGTAAATTTGCTTAGTTATT-----CTAGAG-----AAAAAAATCGGGGACCGGGACTTTACTTCGAGAGATC--GAAGGT------------T-CG-AGTT------ATCGA-----GAGTCACCTGTATTT
gi|10 : TCTTATTTTTA-GATATAA-AT-----TGA---CTTGCTTTTGACAA--------CAC-GG--AACTTTTT--CTCGCATA----GATAA-AG----AGACA-T--TCT------AAAGTTAACAT-A--TTT-GTTTGGGT-TTTTTCC--TC-ATG-TTAAGATAAACGTAATGCATACATG-------TA--------TG----TA-----TTCACAAGA
gi|11 : -------CAC-GG--AACTTTTT--CTCGCATA----GATAA-AG----AGACA-T--TCT------AAAGTTAACAT-AATTTT-GTTTGGGT-TTTTTTTCCTC-ATG-TTAAGATAAACGTAATGCATACATG-------TA--------TG----TA-----TTCACAAGAgaaatttc
gi|13 : caaTGCT-A-----T-------AGAGAAAAAAAAAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTT------------TCCG-AG--------ATTGAAGTCCGAGTCACgaattcattttccacatgc
gi|14 : gcaaattgtgccacctaGCGACTTTCTGATTAAGTTGAAGTTCAAGGG-GACCAAGA-GAAACTTCTAG--------------GAG---TAC-GCAGAAAATCGAAAGTCGACTC-CATCTCATTCACGGAAATCGAATGTT---CCT----ACCATT-ATGGCTC-CAGATTtgcatgagagtcgcccatatctagaaccctacatt
gi|15 : TGAGATG-------------------------A-----GTGTG----TA-----TTGACAAGACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCGA--CAT-ACAAACAAAAAAAATAA---AGCAGAG------GAAGAGTCGCTTTAAACAAAG-AA-TAAACGTTT
gi|16 : TTC-A-AG-AGATCGAAAGTCAAGTCAAATC-------TGGAATTTAAAGG-T--------------TT---GG-TT-CAGATT
gi|18 : ag-AGAA-----AAAAAAATCAAG-ACCGTGATTTCACTTTGAGAGATCAAGAACTT------------TCCG-AG--------ATTGA-----AAGTCcacattatgatgtacgtacatgtacgtatttacaagaccttgtacatta
gi|19 : caaattgtgccaccctatgctatagTGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATATTAAACTACTGCTGACTCTC-GAT-AACTCAAATTTCAA-cgagtca
gi|2 : TACG---------------------T-T----TT----TTTCTTATTTCTCAGGTA--A--T-----TGA---CT----------AA------------G---AACTTTAT--CGTGCATA----AATAA-GA----AAATA-AATTATT---TGAAAGTTTATATTA--TTTTATTTG--TGTTTCTTT--TA-GTG-C-GAGATG-------------------------A-----ACATG----TA-----TTTACAAAACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCAA--CAATACCAAAAAAAAAAAAGATAAAGCAGAG------GCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGGTTCGAGCATATCTCTAATTTATTGTCCTCATAAATTATTGTCTCAAAATCATCGTT-TCAAACT-TACTCTCGTATG-GTC----CTCGC--AAAACGA--T-CAT--ACA-TTTTTTTCATGCACGTACGTA------GTCGATTAT--GCACAGATCC----AA-AGCAA--T-GC-TCAAGTGTGAAG--TGATAATTGACCAATTAAA-CCATTA-AATCCTTACCTGTGTCCACCCTATCAAAGCAGCACGGGC---TG-CGTGTTACCTTT-GT-AAACCTTTAATTG-C-CTTTGCCACACTTCTCTCGGGCGTCCA----------GGCAAG-TCCAAGCG-GAAATAAT-TAGACACTTTGTTG-A--CTTTGTATAAACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCA
gi|20 : -A-AA-AATAA-A--GC-ACAAGTG-GTGGATTGA-A-TTGACCAATTAAA-C------AAT---TAAC--TATCCATCC-AACAAGG
gi|21 : aacT---TACCTGTATCCACCCTATCTAAGCAGCACGGGC---TG-TGTGTTACCTTT-G-TAAACCTTTAATTG-C-C
gi|24 : AAA-TACAGGTGACTCTC-GAT-AACTCGAA
gi|3 : AGTTCAA-TGCGACC----C----CTTCGAGAACGTTTAGTGATCAAGAGTTTCCA-AG-AGATCGAAAA-CAAGTCCAATT-------TATGAATTAAAGG-TTTGCCGTG--ACCATT-ATGG-TTTCGGATTTTAATAGCAACCGGGG----TGTCATATACAAACATCCTGGCATT----T-GCTTCGAGA------------------T-G----TTGGTCCTTCGTATTTTTA-GGTA--A-ATGTCAACGAAGTTC----------AAT-------CAC-GCTGAACTTCATTTCTTGCATTCGCTGATAA-AA----A--TA----TTTT---TAAAGGTTTATGT-A--TTT-ATTTAT-T-TCTTTTTC-TC-ATGATTAAGATA-------------CATGTAGCATATA-----ACATG----TACATATTTTACAAGACACATTTCTC--AAACATATACAACAGTTTTAAACCATCACTAAcag
gi|3 : AGTCGCTTAACACAAAGCAACTATTCCTTATAAA--TGATATTTTCTTGG------CATACCTCT-G----------------ATT----------AAT----ATTCTCAAAAT-TACTGTCACATGTGTCGAAGTC--C--AAA-CGAAGT-CATTCAAATTTTT----ATCTAC------A------GTCGA--ATCTA--GGGACTATAA-AA-AACAA-AA-GCGCCAGGCGAGAGGGTTG--AATC-ACCAATAAAG-C------AAT---TAtgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaatattctcaaaattactgtcacatgtgtcgaagtccaaacgaagtcattcaaatttttatctacagtcgaatctagggactataaaaaacaaaagcgccaggcgagagggttgaatcaccaataaagcaatta
gi|4 : agttcaatgcgaccccttcgagaacgtttagtgatcaagagtttccaagagatcgaaaacaagtccaatttatgaattaaaggtttgccgtgaccattatggtttcggattttaatagcaaccggggtgtcatatacaaacatcctggcatttgcttcgagatgttggtccttcgtatttttaggtaaatgtcaacgaagttcaatcacgctgaacttcatttcttgcattcgctgataaaaatatttttaaaggtttatgtatttatttatttctttttctcatgattaagatacatgtagcatataacatgtacatattttacaagacacatttctcaaacatatacaacagttttaaaccatcactaatgtatacacacacagcatcaatcattatcaatttcaTT-TCTCAAAATCATCGT-CTCAAAATATA-TCTTGCATG-GTC----TCGGCCAAAA-CAA--T-CAT--AAA-TTTT----ATTCAT------ACACGTAGTCGATTAT--ACTCAGAACCT-ATGC-AACGC-ATTGC-TCAGGTGAGAAG--TGATAATTGACCAATTAAA-CTATCAAAATCGTTACCTGCGTCCACCCTATCAAAGCAGCGCGGGC---AG--ACGTTTCCTTT-GT-AAACTTTGAATTG-C-CTTCGCCACGCACCCCTCGTGCGTCCA----------GGTAAG-TCCAAGCGCGGAATAAT-TAGAC-CTTTGTTG-A--TGTTATGTATACTCTATGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCTAA-TTCACTTCGAGAGATCG--------CC------CG----TTTCTCGAGATCGAGAGTAAATTTGCTTA-----CTTATAT-AGAGA----AAAAAAATC-GGGACCGGGACTTCACTTCGAGAG
gi|5 : caaaacatAA-A--GC-ACAAGTG-GTGGATTGA-A-TTGACCAATTAAA-C------AAT---TAACT--ATCCATCCAA-CAAGG-------------TGATGTGTCATCTATAG--AAACACCTAATTAACACATC-CCA-GCAAGTCCCAGGCATTTACTGTGAGGAAGGTAAGGTCCAAGAA-AAAATAAC-TACACACTTCATTG-ATACAGTGTGTATGCTCTACCACCACTTCAGGGAATCGAGGGTGAAAAACAATGAACTAATG-TTTTACTGGACCCAAAGTTTACTTTGAGAGATTGAAAG--TTCAAGAGA--------TTC----TATC-AAAGTTA---TATATA-----T-------AGAG-----AAAAAAATATGAG-CTGTGATTTCACTTTGAGAAATCGAGAACTTTTTTAAAAGAGAT-CGAAGTTTGAGCCATGGA-----GAGTTACCTGAACTTtc
gi|6 : -TACAGGGGACTCTC-AAT-A-------GTTCAA-GC-GACCTTGAGAAAACTTAAAGT---------GATCAAGAG-TTC-A-AG-AGATCGAAAAACAAGTCAAATT-------TAGAAATTAAAGG-T---TTGCGTGACCATT-ATGG-TT-CGGATTTAA-TAGCAACCGGGGTGTATATT---TAC-AACATCCTGGCATTGCTTC-GAGATG---------------------TTG----TC----CTTCGTATTTTTA-GGTA--A-ATGT---C-A---CG----------AATTCAACAACGCTG---AACTTCAT--CTTGAATT----AGCGATAA----AAATA-T--TTTT---TAAAGGTTTATGT-A--TTT-ATTTA--T-TCTTTTC--TC-ATA-TTAAGATA-------------CATG-------TACATATACATGTACATA-----TTTACAAGACAAATTTC-TCAAAtttgccagtgtagtgtataaacatcattatgg
gi|7 : AGTCGCTTAACACAAAG-CACTAATTCTTATAAAT--GATATTTTCTTGG------CATACCTCTAG----------------ATTAT---------------ATTCTCAAAAT-TACTGTC-CATT-GTCAAG-TCC----AAA-CAA--GTCATC-AAA-TTTT----ATCTAC------A------GTCGA--AT-T-CTAGGACTAT-A-AA-AACAA-A--GC-GCAGGCGAGAGGGTTG--AATCACCCAACTAAA-C------AAT---TAAC--AATCCACTCCA-CAAGGAAACACAGGCAAAT--TGTGCCACCTAT-GCTc
gi|8 : aacaaagttttaccatcactaattatacacaaagcacaatcattacaatttcaG----ACCATTTACGG-TT-CAGATTTTA-CCGTAACCGGAA---ATTGT---TATCAAC-----GACATC----T--ATACGTTTTGTTTTTGTTTTTTTTTTT-GGTTTTT----TTTCTTATTCCTCAGGTA--ATAT-----TGA---CT----------AA------------G---AACTTTAT--CGTGCATA----AATAA-AATAAAAAATACA--TGTTATTTGAAAGTTCATAT-A--TTT-ATTTG--T-TCTCTTT--TTAGTG-CTGAGATA-------------------------A-----ACGTG----TAT----TTTACAAAACACGTTTCA-CAAAACAT-T
gi|9 : TT------ATCGA-----GAGTCACCTGTACTtt
gi|9 : tgatG----ACCATT-ACAT-TT-AAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAACA-----A-AGT----T-GATATG---------------------T-nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccattacatttaagattttacagtaactggaaatgtttaccaacaaagttgatatgtt
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): CAACACGGAACTTTTTCTCGCATAGATAAAGAGAATTCTAAAGTTAACATATTTTGTTTGGGTTTTTTTCTCATGTTAAGATAAACGTAATGCATACATGTATGTAATTCACAAGAGAATTCATTGTTCCACATGC
Unaligned ( gi|17 ): CTGTCACTAACTATACACTGTACAAGCATAATTAATCGTCACAATTCCCCGTAGCTTTAAGCACACGTTCTACTAAGCAGCAATGTTTCCTTGGCAATGTCT
Unaligned ( gi|22 ): TCACATTATGATGTACGTACATGTACGTATTTACAAGACCTTGTACATTACGAC
Unaligned ( gi|23 ): TAAGCCCAAATGTCCAAAAACTGCTGATAAAATTACTAATAAA
Alignments
lowQualScore : 222 11 222222 1111 1 1 11 111111111 333333333333 1111 111 33333 1111 888888888888888888888888888888888 11 22222 666666666666666666666666666 1111 22222222222 11 2222 11 77777777777777777777777777777777 1111111111111111 222 1 11 1 4444444 1 2 11 444444 666666666666666666 111111111111 5555555555555 11 11 1111 3333333333333 2222 22222 11 11 333333 111 1 1111111 22 111 4444444444 1 1 1 1111 1 1 1 99999999999999999999999999999999 7777777777777 55555555555555555555555555 22222
lowQualScore : 000 88 1 1 1 999999 1 8 8 0 0000 99999 0 66 6 4 8 11 8 8 6 0 999999999 8 777777777777 5 0 5 5 1 8 4444 444 3 66666 7777 8 000000000000000000000000000000000 55 99 6 44444 111111111111111111111111111 11 66 5 5 5 0000 0 44444444444 2 5 11 5 5555 5 11 5 5 88888888888888888888888888888888 8888888888888888 2 444 8 0 33 6 0 3333333 3 1 8 0 1 1 88 1 1 333333 777777777777777777 555555555555 5 0 8 1 3 8 6666666666666 8 99 99 0 8 7777 1 7777777777777 6 2222 1 9999 6 33333 66 1 8 00 66 1 5 000000 777 0 5555 3 8 77 0 8888888 6 11 111 1 2 2 11 3333333333 0 0 0 3 2 4444 0 0 3 0 0 0 7 99999999999999999999999999999999 6 3 3333333333333 0 8 8 99 0 2 66666666666666666666666666 1 00000
lowQualScore : ... .. . . . ...... . . . . .... ..... . .. . . . .. . . . . ......... . ............ . . . . . . .... ... . ..... .... . ................................. .. .. . ..... ........................... .. .. . . . .... . ........... . . .. . .... . .. . . ................................ ................ . ... . . .. . . ....... . . . . . . .. . . ...... .................. ............ . . . . . . ............. . .. .. . . .... . ............. . .... . .... . ..... .. . . .. .. . . ...... ... . .... . . .. . ....... . .. ... . . . .. .......... . . . . . .... . . . . . . . ................................ . . ............. . . . .. . . .......................... . .....
lowQualScore : 555 55 0 0 0 555555 0 0 0 8 5555 55555 0 88 2 2 0 00 0 0 0 6 444444444 0 444444444444 7 4 7 7 4 0 8888 000 2 44444 0000 0 000000000000000000000000000000000 88 22 7 00000 444444444444444444444444444 66 99 0 0 0 6666 9 11111111111 6 0 99 0 9999 0 99 0 0 66666666666666666666666666666666 1111111111111111 2 888 0 0 88 5 8 3333333 3 4 0 0 4 4 55 0 0 555555 555555555555555555 666666666666 0 8 0 0 2 0 8888888888888 0 00 00 6 0 0000 4 0000000000000 0 8888 4 1111 7 00000 77 4 7 66 99 4 7 777777 555 7 3333 9 7 99 8 3333333 7 22 000 0 5 5 22 8888888888 0 0 0 2 0 8888 2 2 2 0 0 0 3 33333333333333333333333333333333 7 2 2222222222222 8 0 0 44 6 5 22222222222222222222222222 4 00000
consensus : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CAC-GG--AACTTTATCTC--GCA-T-AGATAA-AA----AAATATA---TNTTTGAAAGTTNATAT-A--TTT-ATTTGGG-T-TCTTTTT--TC-GTG-TTGAGATA-ACG-------TA------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA-------AAAAA-AAAGCAGAGGCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTC------TC-GC--AAA-CGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA-----T-----T-AGAGAAAAAAA-A-TC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
Reference ( family-162 ) : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACGA-AACTTCGAGAGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATC--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CAC-G---AACTTTATCTC--GCA-T-AGATAA-AA----AAATAN----TNTTTGAAAGTTTATAT-A--TTT-ATTT--G-T-TCTCTTT--TC-GTG-CTGAGATACATG-------TA------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA-------AAAAA-AAAGCAGAGGCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTC---A--TCCGC--AAA-CGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA-----T-----C-AGAGAAAAAAA-A-TC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
gi|1 : TGTATT---TCTGATTAAAATCATTTTCATATGGTTAACTG------ATAGTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACAA-AACTTCGAGAGATCGAGAGGTT--CG-AG-AGATCGAAAGTCGACTTAA-----TC--CGGAAATCGAA-TGT---C----CG--ACCATA-ACGG-TT-CAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAAC-----GACA----TTTAGATACG---------------------TG----TT----TTTCTTATTTCTC-AGTA--A-AT----TGACT----------AA-----------G---AACTT-ATCGT--GCA-T-AAATAA-GA----AAATAAA---TATTTGAAAGTTTTTAT-G--TTT-ATTT----T-TCTCTTT--TA-GTG-CTGAGA---GTG--------A------ACG----------TG----T-----A-----TTTACAAAACGTATTTCATTAAAACGT-TAC-ACTGTCGCAA--CATCACAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAGAGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGAT-CGA-TCTATCTCTAA----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTTTCGCATG-GTC------TTTGC--AAA-CAA--ACAT--ACA-TTTT----ATTCAT------A------GTGGATCATTGCGCAGATCCT-A-AACAGCACCAT-GC-TCAAGTGAGAGAAGTGATAATTGACC-ATTAGATC------AAT---TACCTGTGTCCACCCTATCAAACGG--GCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-G-CATCGCCACGCTCCTCTCGGGTGTCCA----------GGTAAG-TCCAAGCG-GAAATAATATAGACACTTTGTTGTA--TGTTTTGTATACTC-ACGACCACTTCGAAAGATCGAGAGTGAAAAACAATGAAAT-ATGTTTTTACGGGACCCAAA-TTCACTTCGAGAG-TCGAGAACTTCGGAGAGATCGAACTGT---TCGAGAGATCGAGAGTAAATTTGCTTAGTTATT-----CTAGAG-AAAAAA-A-TCGGGGACCGGGACTTTACTTCGAGAGATCGA-AGGTT-------------CG-AGTT------ATCGA-----GAGTCACCTGTATTT
gi|10 : TCTTATTTTTA-GATATAA-AT----TGACTTGCTTTTGACAA-------CAC-GG--AACTTTTTCTC--GCA-T-AGATAA-AG----AGACAT----TCT---AAAGTTAACAT-A--TTT-GTTTGGG-T-TTTTTCC--TC-ATG-TTAAGATAAACG-------TA------ATGCATACATGTATG----T-----A-----TTCACAAGA
gi|11 : ----------AA-------CAC-GG--AACTTTTTCTC--GCA-T-AGATAA-AG----AGACAT----TCT---AAAGTTAACAT-AATTTT-GTTTGGG-T-TTTTTTTCCTC-ATG-TTAAGATAAACG-------TA------ATGCATACATGTATG----T-----A-----TTCACAAGAgaaatttc
gi|12 : c----------AA-------CAC-GG--AACTTTTTCTC--GCA-T-AGATAA-AG----AGA-AT----TCT---AAAGTTAACAT-AT-TTT-GTTTGGG-T-TTTTTTC--TC-ATG-TTAAGATAAACG-------TAATGCATACA----------TG----TATGTAA-----TTCACAAGAgaattcattttccacatgc
gi|13 : c-AAAAAAAAAAA-A-TC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGAAGTCCGAGTCACgaattcattgttccacatgc
gi|14 : gcaaattgtgccacctatgctatagagGCGACTTTCTGATTAAGTTGAAGTTCAAGGG-GACCAAGA-GA-AACTTCTAG-------GAG-TA--CGCAGAAAATCGAAAGTCGACTCCATCTCATTCACGGAAATCGAATGTT---C----CT--ACCATT-ATGGCTC-CAGATTtgcatgagagtcgcccatatctagaaccctacatt
gi|15 : TGAGATG------------A------GTG----------TG----T-----A-----TTGACAAGACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCGA--CAT-AC--AAACAAAA-------AAAAT-AAAGCAGAGGAAGAGTCGCTTTAAACAAAG-AA-TAAACGTTT
gi|16 : AG-TT--CA-AG-AGATCGAAAGTCAAGTCAA----ATC--TGGAATTTAAA-GGT----------------TT---GG-TT-CAGATT
gi|18 : TGCT-A-----T-------AGAGAAAAAAA-AATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGA-----AAGTCcacattatgatgtacgtacatgtacgtatttacaagaccttgtacatta
gi|19 : caaattgtgccaccctaTGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATATTAAACTACTGCTGACTCTC-GAT-AACTCAAATTTCAA-cgagtca
gi|2 : TACG---------------------TT----TT----TTTCTTATTTCTCAGGTA--A--T----TGACT----------AA-----------G---AACTTTATCGT--GCA-T-AAATAA-GA----AAATAAAT--TATTTGAAAGTTTATATTA--TTTTATTT--G-TGTTTCTTT--TA-GTG-C-GAGATG------------A------ACA----------TG----T-----A-----TTTACAAAACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCAA--CAATACCAAAAAAAAA-------AAAGATAAAGCAGAGGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGGTTCGAGCATATCTCTAATTTATTGTCCTCATAAATTATTGTCTCAAAATCATCGTT-TCAAACT-TACTCTCGTATG-GTC---C--TC-GC--AAAACGA--TCAT--ACA-TTTTTTTCATGCACGTACGTA------GTCGATTAT-GCACAGATCC----AA-AGCA-A-T-GC-TCAAGTGTGAAG--TGATAATTGACCAATTAAA-CCATTA-AATCCTTACCTGTGTCCACCCTATCAA--AGCAGCACGGGC---TG-CGTGTTACCTTT-GT-AAACCTTTAATTG-C-CTTTGCCACACTTCTCTCGGGCGTCCA----------GGCAAG-TCCAAGCG-GAAATAAT-TAGACACTTTGTTG-A--CTTTGTATAAACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCA
gi|20 : -A-AA-AATA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAAC--TATCCATCC-AACAA--GG
gi|21 : aacT---TACCTGTATCCACCCTATCTA--AGCAGCACGGGC---TG-TGTGTTACCTTT-G-TAAACCTTTAATTG-C-C
gi|24 : TGAAATACAGGTGACTCTC-GAT-AACTCGAA
gi|3 : AGTTCAA-TGCGACCCCTTCGAGAACGTTTAGTGATCAAGAG-TTTCCA-AG-AGATCGAAAA-CAAGTCCA----ATT--TATGAATTAAA-GGTTTGC----CGTGACCATT-ATGG-TTTCGGATTTTAATAGCAACCGGGG----TGTCATATACAAACATCCTGGCA----TTT-GCTTCGAGA------------------TG----TTGGTCCTTCGTATTTTTA-GGTA--A-ATGT--CAACG----------AAGTTCAATCAC-GCTGAACTTCATTTCTTGCA-TTCGCTGATAA----AAATAT----T-TTTAAAGGTTTATGT-A--TTT-ATTT--ATT-TCTTTTTC-TC-ATGATTAAGATACATGTAGCATATA------ACA----------TG----T-----ACATATTTTACAAGACACATTTCTC--AAACATATACAACAGTTTTAAACCATCACTAAg
gi|3 : AGTCGCTTAACACAAAGCAACTATTCCTTATAAAT--GATATTTTCTTGG------CATACCTCT-G----------------ATTA-------------AT-ATTCTCAAAAT-TACTGTCACATGTGTCGAAG--TC--C--AAA-CGAAGTCATTCAAATTTTT----ATCTAC------A------GTCGAATCTAG---GGACTATAA-AA-AACA-AAA-GCGCCAGGCGAGAGGGTTG--AATC-ACCAATAAAG-C------AAT---TAtgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaatattctcaaaattactgtcacatgtgtcgaagtccaaacgaagtcattcaaatttttatctacagtcgaatctagggactataaaaaacaaaagcgccaggcgagagggttgaatcaccaataaagcaatta
gi|4 : agttcaatgcgaccccttcgagaacgtttagtgatcaagagtttccaagagatcgaaaacaagtccaatttatgaattaaaggtttgccgtgaccattatggtttcggattttaatagcaaccggggtgtcatatacaaacatcctggcatttgcttcgagatgttggtccttcgtatttttaggtaaatgtcaacgaagttcaatcacgctgaacttcatttcttgcattcgctgataaaaatatttttaaaggtttatgtatttatttatttctttttctcatgattaagatacatgtagcatataacatgtacatattttacaagacacatttctcaaacatatacaacagttttaaaccatcactaatgtatacacacacagcatcaatcattatcaatttcaATTTTCTCAAAATCATCGT-CTCAAAATATA-TCTTGCATG-GTC------TCGGCCAAAA-CAA--TCAT--AAA-TTTT----ATTCAT------ACACGTAGTCGATTAT-ACTCAGAACCT-ATGC-AACG-CATTGC-TCAGGTGAGAAG--TGATAATTGACCAATTAAA-CTATCAAAATCGTTACCTGCGTCCACCCTATCAA--AGCAGCGCGGGC---AG--ACGTTTCCTTT-GT-AAACTTTGAATTG-C-CTTCGCCACGCACCCCTCGTGCGTCCA----------GGTAAG-TCCAAGCGCGGAATAAT-TAGAC-CTTTGTTG-A--TGTTATGTATACTCTATGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCTAA-TTCACTTCGAGAGATCG-------CC------------CGTTTCTC--GAGATCGAGAGTAAATTTGCTTA-----CTTATAT-AGAGAAAAAAA-A-TC-GGGACCGGGACTTCACTTCGAGAG
gi|5 : caaaacA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAACTAT--CCATCCAA-CAA--GG-------------TGATGTGTCATCTATAG--AAACACCTAATTAACACATC-CCA-GCAAGTCCCAGGCATTTACTGTGAGGAAGGTAAGGTCCAAGAA-AAAATAAC-TACACACTTCATTG-ATACAGTGTGTATGCTCTACCACCACTTCAGGGAATCGAGGGTGAAAAACAATGAACTAATG-TTTTACTGGACCCAAAGTTTACTTTGAGAGATTGAAAG--TTCAAGAGA--------T---TC----TATC------AAAGTTATATA-----TA----T-AGAGAAAAAAATA-T---GAGCTGTGATTTCACTTTGAGAAATCGAGAACTTTTTTAAAAGAGATCGAAGTTTGAGCCATGGA-----GAGTTACCTGAACTTtc
gi|6 : TACAGGGGACTCTC-AAT-A-------GTTCAA-GC-GACCTTGAGAA-AACTTAAAGTGATCAAGAG-TT--CA-AG-AGATCGAAAAACAAGTCAA----ATT--TAGAAATTAAA-GGT---TTGCGTG--ACCATT-ATGG-TT-CGGATTTAA-TAGCAACCGGGGTGTATATT---TA-CAACATCCTGGCATTGCTTC-GAGATGT--------------------TG----TC----CTTCGTATTTTTA-GGTA--A-ATGTCACGAATTCAAC-----AA-------CGCTG---AACTTCATCTT--GAATT-AGCGAT-AA----AAATAT----TTTTTAAAGGTTTATGT-A--TTT-ATTT--A-T-TCTTTTC--TC-ATA-TTAAGATACATG-------TACATAT-ACA----------TGTACAT-----A-----TTTACAAGACAAATTTC-TCAAAtttgccagtgtagtgtataaacatcattatgg
gi|7 : AGTCGCTTAACACAAAG-CACTAATTCTTATAAAT--GATATTTTCTTGG------CATACCTCTAG----------------ATTAT---------------ATTCTCAAAAT-TACTGTC-CATT-GTC---AAGTCC----AAA-CAAG-TCATC-AAA-TTTT----ATCTAC------A------GTCGA--ATT-CTAGGACTAT-A-AA-AACA-AA--GC-GCAGGCGAGAGGGTTG--AATCACCCAACTAAA-C------AAT---TAAC--AATCCACTCCA-CAA--GGAAACACAGGCAAAT--TGTGCCACCTAT-GCTc
gi|8 : aacaaagttttaccatcactaattatacacaaagcacaatcattacaatttcaG--ACCATTTACGG-TT-CAGATTTTA-CCGTAACCGGAA---ATTGT---TATCAAC-----GACA----TCT--ATACGTTTTGTTTTTGTTTTTTTTTTTGGTTTTT----TTTCTTATTCCTCAGGTA--ATAT----TGACT----------AA-----------G---AACTTTATCGT--GCA-T-AAATAA-AATAAAAAATACATGTTATTTGAAAGTTCATAT-A--TTT-ATTT--G-T-TCTCTTT--TTAGTG-CTGAGATA------------A------ACG----------TG----T-----AT----TTTACAAAACACGTTTCA-CAAAACAT-T
gi|9 : TT------ATCGA-----GAGTCACCTGTACTtt
gi|9 : tgatG--ACCATT-ACAT-TT-AAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAACA-----A-A----GTT-GATATG---------------------Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccattacatttaagattttacagtaactggaaatgtttaccaacaaagttgatatgtt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTGTCACTAACTATACACTGTACAAGCATAATTAATCGTCACAATTCCCCGTAGCTTTAAGCACACGTTCTACTAAGCAGCAATGTTTCCTTGGCAATGTCT
Unaligned ( gi|22 ): TCACATTATGATGTACGTACATGTACGTATTTACAAGACCTTGTACATTACGAC
Unaligned ( gi|23 ): TAAGCCCAAATGTCCAAAAACTGCTGATAAAATTACTAATAAA
Alignments
lowQualScore : 222 11 222222 1111 1 11 11111 11 333333333333 1111 111 33333 1111 888888888888888888888888888888888 11 22222 5555555555555555555555555 1111 1111 22222222222222 11 11 11 88888888888888888888888888888888888 1111111111111111 222 1 11 1 555555555 1 2 11 444444 666666666666666666 111111111111 555555555 1 11 11 1111 3333333333333 2222 22222 11 11 333333 111 1 1111111 22 111 4444444444 1 1 1 1111 1 1 1 99999999999999999999999999999999 666666666666 22222222 55555555555555555555555555 22222
lowQualScore : 000 88 1 1 1 999999 1 8 8 0 0000 22 8 0 11 9 4 8 11 8 8 6 0 77777 11 8 777777777777 5 0 5 5 1 8 4444 444 3 66666 7777 8 000000000000000000000000000000000 55 99 6 44444 2222222222222222222222222 11 66 5 0000 0000 2 11111111111111 1 5 11 5 99 2 5 11 5 77777777777777777777777777777777777 8888888888888888 2 444 8 0 33 6 0 333333333 3 6 6 1 8 0 1 1 88 1 1 333333 777777777777777777 555555555555 5 0 8 1 3 8 222222222 6 99 99 0 8 7777 1 7777777777777 6 2222 1 9999 6 33333 66 1 8 00 66 1 5 000000 777 0 5555 3 8 77 0 8888888 6 11 111 1 2 2 11 3333333333 0 0 0 3 2 4444 0 0 3 0 0 0 7 99999999999999999999999999999999 6 777777777777 0 8 55555555 0 2 66666666666666666666666666 1 00000
lowQualScore : ... .. . . . ...... . . . . .... .. . . .. . . . .. . . . . ..... .. . ............ . . . . . . .... ... . ..... .... . ................................. .. .. . ..... ......................... .. .. . .... .... . .............. . . .. . .. . . .. . ................................... ................ . ... . . .. . . ......... . . . . . . . . .. . . ...... .................. ............ . . . . . . ......... . .. .. . . .... . ............. . .... . .... . ..... .. . . .. .. . . ...... ... . .... . . .. . ....... . .. ... . . . .. .......... . . . . . .... . . . . . . . ................................ . ............ . . ........ . . .......................... . .....
lowQualScore : 555 55 0 0 0 555555 0 0 0 8 5555 00 8 0 22 8 2 0 00 0 0 0 6 88888 00 0 444444444444 7 4 7 7 4 0 8888 000 2 44444 0000 0 000000000000000000000000000000000 88 22 7 00000 0000000000000000000000000 66 99 0 6666 6666 8 00000000000000 0 0 99 0 55 2 0 99 0 33333333333333333333333333333333333 1111111111111111 2 888 0 0 88 5 8 333333333 3 7 7 4 0 0 4 4 55 0 0 555555 555555555555555555 666666666666 0 8 0 0 2 0 222222222 0 00 00 6 0 0000 4 0000000000000 0 8888 4 1111 7 00000 77 4 7 66 99 4 7 777777 555 7 3333 9 7 99 8 3333333 7 22 000 0 5 5 22 8888888888 0 0 0 2 0 8888 2 2 2 0 0 0 3 33333333333333333333333333333333 7 333333333333 8 0 44444444 6 5 22222222222222222222222222 4 00000
consensus : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTATCTC--GCA-TA----GATAAAA----AGATATATT-TT---TGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGAT-A--------ACGT-A------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA---------AAAAA-AAAGCAGAGGCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNA--TCG--CAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAAAAA-AA---TC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
Reference ( family-162 ) : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTATCTC--GCA-TA----GATAAAA----AAATATATN-TT---TGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGAT-A--------ACGT-A------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA---------AAAAA-AAAGCAGAGGCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTC----TCG--CAAA-CGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------T-----TAGAGAAAAAAA-A----TC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
gi|1 : TGTATT---TCTGATTAAAATCATTTTCATATGGTTAACTG------ATAGTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACAA-AACTTCGAGAGATCGAGAGGTT--CG-AG-AGATCGAAAGTCGACTTAA-----TC--CGGAAATCGAA-TGT---C----CG--ACCATA-ACGG-TT-CAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAAC-----GACA----TTTAGATACG---------------------TG----TT----TTTCTTATTTCTC-AGTA--A-AT----TGACT----------AA-------------GAACTT-ATCGT--GCA-TA----AATAAGA----AAATAAATA-TT---TGAAAGTTTTTAT-G--TTT-ATTT---TTCT-CTTT--TAGTG-CTGAGA-------------GTGA------ACG----------TG----T-----A-----TTTACAAAACGTATTTCATTAAAACGT-TAC-ACTGTCGCAA--CATCACAAAAAAAAAAAAAAAAAAAAAAAA-AAAA-AGA-GCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGAT-CGA-TCTATCTCTAA----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTTTCGCATG-GTCT---TTG--CAAA-CAA--ACAT--ACA-TTTT----ATTCAT------A------GTGGATCATTGCGCAGATCCT-A-AACAGCACCAT-GC-TCAAGTGAGAGAAGTGATAATTGACC-ATTAGATC------AAT---TACCTGTGTCCACCCTATCAAACGG--GCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-G-CATCGCCACGCTCCTCTCGGGTGTCCA----------GGTAAG-TCCAAGCG-GAAATAATATAGACACTTTGTTGTA--TGTTTTGTATACTC-ACGACCACTTCGAAAGATCGAGAGTGAAAAACAATGAAAT-ATGTTTTTACGGGACCCAAA-TTCACTTCGAGAG-TCGAGAACTTCGGAGAGATCGAACTGT---TCGAGAGATCGAGAGTAAATTTGCTTAGTTATTC-----TAGAG-AAAAAA-A----TCGGGGACCGGGACTTTACTTCGAGAGATCGA-AGGTT-------------CG-AGTT------ATCGA-----GAGTCACCTGTATTT
gi|10 : TCTTATTTTTA-GATATAA-AT----TGACTTGCTTTTGACAA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGACAT-TC-T------AAAGTTAACAT-A--TTT-GTTTGGGTTTT-TTCC--TCATG-TTAAGATAA--------ACGT-A------ATGCATACATGTATG----T-----A-----TTCACAAGA
gi|11 : ----------AA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGACAT-TC-T------AAAGTTAACAT-AATTTT-GTTTGGGTTTT-TTTTCCTCATG-TTAAGATAA--------ACGT-A------ATGCATACATGTATG----T-----A-----TTCACAAGAgaaatttc
gi|12 : c----------AA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGA---ATT-CT-----AAAGTTAACAT-AT-TTT-GTTTGGGTTTT-TTTC--TCATG-TTAAGATAA--------ACGT-AATGCATACA----------TG----TATGTAA-----TTCACAAGAgaattcattttccacatgc
gi|13 : c-----TAGAGAAAAAAA-AAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGAAGTCCGAGTCACgaattcattgttccacatgc
gi|14 : gcaaattgtgccacctatgctaGCGACTTTCTGATTAAGTTGAAGTTCAAGGG-GACCAAGA-GA-AACTTCTAG-------GAG-TA--CGCAGAAAATCGAAAGTCGACTCCATCTCATTCACGGAAATCGAATGTT---C----CT--ACCATT-ATGGCTC-CAGATTtgcatgagagtcgcccatatctagaaccctacatt
gi|15 : TGAGAT-G--------A-GT----------G----------TG----T-----A-----TTGACAAGACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCGA--CAT-AC--AAACAAAA---------AAAAT-AAAGCAGAGGAAGAGTCGCTTTAAACAAAG-AA-TAAACGTTT
gi|16 : AG-TT--CA-AG-AGATCGAAAGTCAAGTCAA----ATC--TGGAATTTAAA-GGT----------------TT---GG-TT-CAGATT
gi|18 : -----TAGAGAAAAAAA-AA---TC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGA-----AAGTCcacattatgatgtacgtacatgtacgtatttacaagaccttgtacatta
gi|19 : caaattgtgccaccctatgctaTGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATATTAAACTACTGCTGACTCTC-GAT-AACTCAAATTTCAA-cgagtca
gi|2 : TACG---------------------TT----TT----TTTCTTATTTCTCAGGTA--A--T----TGACT----------AA-------------GAACTTTATCGT--GCA-TA----AATAAGA----AAATAAATTATT---TGAAAGTTTATATTA--TTTTATTTGTGTT-T-CTTT--TAGTG-C-GAGAT-G--------A-----------ACA----------TG----T-----A-----TTTACAAAACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCAA--CAATACCAAAAAAAAA---------AAAGATAAAGCAGAGGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGGTTCGAGCATATCTCTAATTTATTGTCCTCATAAATTATTGTCTCAAAATCATCGTT-TCAAACT-TACTCTCGTATG-GTCC---TCG--CAAAACGA--TCAT--ACA-TTTTTTTCATGCACGTACGTA------GTCGATTAT-GCACAGATCC----AA-AGCA-A-T-GC-TCAAGTGTGAAG--TGATAATTGACCAATTAAA-CCATTA-AATCCTTACCTGTGTCCACCCTATCAA--AGCAGCACGGGC---TG-CGTGTTACCTTT-GT-AAACCTTTAATTG-C-CTTTGCCACACTTCTCTCGGGCGTCCA----------GGCAAG-TCCAAGCG-GAAATAAT-TAGACACTTTGTTG-A--CTTTGTATAAACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCA
gi|20 : -A-AA-AATA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAAC--TATCCATCC-AACAA--GG
gi|21 : aacT---TACCTGTATCCACCCTATCTA--AGCAGCACGGGC---TG-TGTGTTACCTTT-G-TAAACCTTTAATTG-C-C
gi|24 : TGAAATACAGGTGACTCTC-GAT-AACTCGAA
gi|3 : AGTTCAA-TGCGACCCCTTCGAGAACGTTTAGTGATCAAGAG-TTTCCA-AG-AGATCGAAAA-CAAGTCCA----ATT--TATGAATTAAA-GGTTTGC----CGTGACCATT-ATGG-TTTCGGATTTTAATAGCAACCGGGG----TGTCATATACAAACATCCTGGCA----TTT-GCTTCGAGA------------------TG----TTGGTCCTTCGTATTTTTA-GGTA--A-ATGT--CAACG----------AAGTTCAATCACGCTGAACTTCATTTCTTGCA-TTCGCTGATAAAA----A----TATT-TT---TAAAGGTTTATGT-A--TTT-ATTT-ATTTCT-TTTTC-TCATGATTAAGAT-ACATGTAGCATAT-A------ACA----------TG----T-----ACATATTTTACAAGACACATTTCTC--AAACATATACAACAGTTTTAAACCATCACTAAg
gi|3 : AGTCGCTTAACACAAAGCAACTATTCCTTATAAAT--GATATTTTCTTGG------CATACCTCT-G----------------ATTA-------------AT-ATTCTCAAAAT-TACTGTCACATGTGTCGAAGTC---CAAA-CGAAGTCATTCAAATTTTT----ATCTAC------A------GTCGAATCTAG---GGACTATAA-AA-AACA-AAA-GCGCCAGGCGAGAGGGTTG--AATC-ACCAATAAAG-C------AAT---TAtgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaatattctcaaaattactgtcacatgtgtcgaagtccaaacgaagtcattcaaatttttatctacagtcgaatctagggactataaaaaacaaaagcgccaggcgagagggttgaatcaccaataaagcaatta
gi|4 : agttcaatgcgaccccttcgagaacgtttagtgatcaagagtttccaagagatcgaaaacaagtccaatttatgaattaaaggtttgccgtgaccattatggtttcggattttaatagcaaccggggtgtcatatacaaacatcctggcatttgcttcgagatgttggtccttcgtatttttaggtaaatgtcaacgaagttcaatcacgctgaacttcatttcttgcattcgctgataaaaatatttttaaaggtttatgtatttatttatttctttttctcatgattaagatacatgtagcatataacatgtacatattttacaagacacatttctcaaacatatacaacagttttaaaccatcactaatgtatacacacacagcatcaatcattatcaatttcaATTTTCTCAAAATCATCGT-CTCAAAATATA-TCTTGCATG-GTC----TCGGCCAAAACAA--TCAT--AAA-TTTT----ATTCAT------ACACGTAGTCGATTAT-ACTCAGAACCT-ATGC-AACG-CATTGC-TCAGGTGAGAAG--TGATAATTGACCAATTAAA-CTATCAAAATCGTTACCTGCGTCCACCCTATCAA--AGCAGCGCGGGC---AG--ACGTTTCCTTT-GT-AAACTTTGAATTG-C-CTTCGCCACGCACCCCTCGTGCGTCCA----------GGTAAG-TCCAAGCGCGGAATAAT-TAGAC-CTTTGTTG-A--TGTTATGTATACTCTATGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCTAA-TTCACTTCGAGAGATCG-------CC------------CGTTTCTC--GAGATCGAGAGTAAATTTGCTTA------CTTATATAGAGAAAAAAA-A----TC-GGGACCGGGACTTCACTTCGAGAG
gi|5 : caaaacA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAACTAT--CCATCCAA-CAA--GG-------------TGATGTGTCATCTATAG--AAACACCTAATTAACACATC-CCA-GCAAGTCCCAGGCATTTACTGTGAGGAAGGTAAGGTCCAAGAA-AAAATAAC-TACACACTTCATTG-ATACAGTGTGTATGCTCTACCACCACTTCAGGGAATCGAGGGTGAAAAACAATGAACTAATG-TTTTACTGGACCCAAAGTTTACTTTGAGAGATTGAAAG--TTCAAGAGA--------T---TC----TATC------AAAGTTATATA------TA----TAGAGAAAAAAATA----T---GAGCTGTGATTTCACTTTGAGAAATCGAGAACTTTTTTAAAAGAGATCGAAGTTTGAGCCATGGA-----GAGTTACCTGAACTTtc
gi|6 : TACAGGGGACTCTC-AAT-A-------GTTCAA-GC-GACCTTGAGAA-AACTTAAAGTGATCAAGAG-TT--CA-AG-AGATCGAAAAACAAGTCAA----ATT--TAGAAATTAAA-GGT---TTGCGTG--ACCATT-ATGG-TT-CGGATTTAA-TAGCAACCGGGGTGTATATT---TA-CAACATCCTGGCATTGCTTC-GAGATGT--------------------TG----TC----CTTCGTATTTTTA-GGTA--A-ATGTCACGAATTCAAC-----AA-------CGCT--GAACTTCATCTT--GAATTA----GCGATAA----AAATAT-TT-TT---TAAAGGTTTATGT-A--TTT-ATTT--ATTCT-TTTC--TCATA-TTAAGAT-AC-------ATGT-ACATAT-ACA----------TGTACAT-----A-----TTTACAAGACAAATTTC-TCAAAtttgccagtgtagtgtataaacatcattatgg
gi|7 : AGTCGCTTAACACAAAG-CACTAATTCTTATAAAT--GATATTTTCTTGG------CATACCTCTAG----------------ATTAT---------------ATTCTCAAAAT-TACTGTC-CATT-GTCAAG-TC---CAAA-CAAG-TCATC-AAA-TTTT----ATCTAC------A------GTCGA--ATT-CTAGGACTAT-A-AA-AACA-AA--GC-GCAGGCGAGAGGGTTG--AATCACCCAACTAAA-C------AAT---TAAC--AATCCACTCCA-CAA--GGAAACACAGGCAAAT--TGTGCCACCTAT-GCTc
gi|8 : aacaaagttttaccatcactaattatacacaaagcacaatcattacaatttcaG--ACCATTTACGG-TT-CAGATTTTA-CCGTAACCGGAA---ATTGT---TATCAAC-----GACA----TCT--ATACGTTTTGTTTTTGTTTTTTTTTTTGGTTTTT----TTTCTTATTCCTCAGGTA--ATAT----TGACT----------AA-------------GAACTTTATCGT--GCA-TA----AATAAAATAAAAAATACATG-TTATTTGAAAGTTCATAT-A--TTT-ATTT--GTTCTCTTTT--TAGTG-CTGAGAT-A-------------A------ACG----------TG----T-----AT----TTTACAAAACACGTTTCA-CAAAACAT-T
gi|9 : TT------ATCGA-----GAGTCACCTGTACTtt
gi|9 : tgatG--ACCATT-ACAT-TT-AAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAACA-----A-A----GTT-GATATG---------------------Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccattacatttaagattttacagtaactggaaatgtttaccaacaaagttgatatgtt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTGTCACTAACTATACACTGTACAAGCATAATTAATCGTCACAATTCCCCGTAGCTTTAAGCACACGTTCTACTAAGCAGCAATGTTTCCTTGGCAATGTCT
Unaligned ( gi|22 ): TCACATTATGATGTACGTACATGTACGTATTTACAAGACCTTGTACATTACGAC
Unaligned ( gi|23 ): TAAGCCCAAATGTCCAAAAACTGCTGATAAAATTACTAATAAA
Alignments
lowQualScore : 222 11 222222 1111 1 11 11111 11 333333333333 1111 111 33333 1111 888888888888888888888888888888888 11 22222 5555555555555555555555555 1111 2222222222222222 11 11 11 88888888888888888888888888888888888 1111111111111111 222 1 11 1 333333 1 1 2 11 444444 666666666666666666 111111111111 44444444444 11 11 1111 3333333333333 2222 22222 11 11 333333 111 1 1111111 22 111 4444444444 1 1 1 1111 1 1 1 99999999999999999999999999999999 666666666666 1 111 55555555555555555555555555 22222
lowQualScore : 000 88 1 1 1 999999 1 8 8 0 0000 22 8 0 11 9 4 8 11 8 8 6 0 77777 11 8 777777777777 5 0 5 5 1 8 4444 444 3 66666 7777 8 000000000000000000000000000000000 55 99 6 44444 2222222222222222222222222 11 66 5 7777 9999999999999999 66 1 5 11 5 99 2 5 11 5 77777777777777777777777777777777777 8888888888888888 2 444 8 0 33 6 0 888888 3 3 1 8 0 1 1 88 1 1 333333 777777777777777777 555555555555 5 0 8 1 3 8 99999999999 0 99 99 0 8 7777 1 7777777777777 6 2222 1 9999 6 33333 66 1 8 00 66 1 5 000000 777 0 5555 3 8 77 0 8888888 6 11 111 1 2 2 11 3333333333 0 0 0 3 2 4444 0 0 3 0 0 0 7 99999999999999999999999999999999 6 111111111111 0 444 99 0 2 66666666666666666666666666 1 00000
lowQualScore : ... .. . . . ...... . . . . .... .. . . .. . . . .. . . . . ..... .. . ............ . . . . . . .... ... . ..... .... . ................................. .. .. . ..... ......................... .. .. . .... ................ .. . . .. . .. . . .. . ................................... ................ . ... . . .. . . ...... . . . . . . . .. . . ...... .................. ............ . . . . . . ........... . .. .. . . .... . ............. . .... . .... . ..... .. . . .. .. . . ...... ... . .... . . .. . ....... . .. ... . . . .. .......... . . . . . .... . . . . . . . ................................ . ............ . ... .. . . .......................... . .....
lowQualScore : 555 55 0 0 0 555555 0 0 0 8 5555 00 8 0 22 8 2 0 00 0 0 0 6 88888 00 0 444444444444 7 4 7 7 4 0 8888 000 2 44444 0000 0 000000000000000000000000000000000 88 22 7 00000 0000000000000000000000000 66 99 0 5555 8888888888888888 66 0 0 99 0 55 2 0 99 0 33333333333333333333333333333333333 1111111111111111 2 888 0 0 88 5 8 333333 3 3 4 0 0 4 4 55 0 0 555555 555555555555555555 666666666666 0 8 0 0 2 0 00000000000 8 00 00 6 0 0000 4 0000000000000 0 8888 4 1111 7 00000 77 4 7 66 99 4 7 777777 555 7 3333 9 7 99 8 3333333 7 22 000 0 5 5 22 8888888888 0 0 0 2 0 8888 2 2 2 0 0 0 3 33333333333333333333333333333333 7 777777777777 6 000 44 6 5 22222222222222222222222222 4 00000
consensus : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTATCTC--GCA-TA----GATAAAA----AGATATAT--T-TTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGAT-A--------ACGT-A------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA------AAAAA-AAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNA--TCG--CAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
Reference ( family-162 ) : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTATCTC--GCA-TA----GATAAAA----AGATATAT--T-TTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGAT-A--------ACGT-A------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA------AAAAA-AAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNA--TCG--CAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
gi|1 : TGTATT---TCTGATTAAAATCATTTTCATATGGTTAACTG------ATAGTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACAA-AACTTCGAGAGATCGAGAGGTT--CG-AG-AGATCGAAAGTCGACTTAA-----TC--CGGAAATCGAA-TGT---C----CG--ACCATA-ACGG-TT-CAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAAC-----GACA----TTTAGATACG---------------------TG----TT----TTTCTTATTTCTC-AGTA--A-AT----TGACT----------AA-------------GAACTT-ATCGT--GCA-TA----AATAAGA----AAATAAAT--A-TTTGAAAGTTTTTAT-G--TTT-ATTT---TTCT-CTTT--TAGTG-CTGAGA-------------GTGA------ACG----------TG----T-----A-----TTTACAAAACGTATTTCATTAAAACGT-TAC-ACTGTCGCAA--CATCACAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAGAGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGAT-CGA-TCTATCTCTAA----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTTTCGCATG-GTCT---TTG--C-AAACAA--ACAT--ACA-TTTT----ATTCAT------A------GTGGATCATTGCGCAGATCCT-A-AACAGCACCAT-GC-TCAAGTGAGAGAAGTGATAATTGACC-ATTAGATC------AAT---TACCTGTGTCCACCCTATCAAACGG--GCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-G-CATCGCCACGCTCCTCTCGGGTGTCCA----------GGTAAG-TCCAAGCG-GAAATAATATAGACACTTTGTTGTA--TGTTTTGTATACTC-ACGACCACTTCGAAAGATCGAGAGTGAAAAACAATGAAAT-ATGTTTTTACGGGACCCAAA-TTCACTTCGAGAG-TCGAGAACTTCGGAGAGATCGAACTGT---TCGAGAGATCGAGAGTAAATTTGCTTAGTTATTC-----TAGAG--AA---AAAAATCGGGGACCGGGACTTTACTTCGAGAGATCGA-AGGTT-------------CG-AGTT------ATCGA-----GAGTCACCTGTATTT
gi|10 : TCTTATTTTTA-GATATAA-AT----TGACTTGCTTTTGACAA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGACAT------TCT-AAAGTTAACAT-A--TTT-GTTTGGGTTTT-TTCC--TCATG-TTAAGATAA--------ACGT-A------ATGCATACATGTATG----T-----A-----TTCACAAGA
gi|11 : ----------AA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGACAT-T--C-T---AAAGTTAACAT-AATTTT-GTTTGGGTTTT-TTTTCCTCATG-TTAAGATAA--------ACGT-A------ATGCATACATGTATG----T-----A-----TTCACAAGAgaaatttc
gi|12 : c----------AA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGA---AT--T-CT--AAAGTTAACAT-AT-TTT-GTTTGGGTTTT-TTTC--TCATG-TTAAGATAA--------ACGT-AATGCATACA----------TG----TATGTAA-----TTCACAAGAgaattcattttccacatgc
gi|13 : c-----TAGAGAAAAAAAAAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGAAGTCCGAGTCACgaattcattgttccacatgc
gi|14 : gcaaattgtgccacctatgctaGCGACTTTCTGATTAAGTTGAAGTTCAAGGG-GACCAAGA-GA-AACTTCTAG-------GAG-TA--CGCAGAAAATCGAAAGTCGACTCCATCTCATTCACGGAAATCGAATGTT---C----CT--ACCATT-ATGGCTC-CAGATTtgcatgagagtcgcccatatctagaaccctacatt
gi|15 : TGAGAT-G--------A-GT----------G----------TG----T-----A-----TTGACAAGACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCGA--CAT-AC--AAACAAAA------AAAAT-AAAGCAGAG-GAAGAGTCGCTTTAAACAAAG-AA-TAAACGTTT
gi|16 : AG-TT--CA-AG-AGATCGAAAGTCAAGTCAA----ATC--TGGAATTTAAA-GGT----------------TT---GG-TT-CAGATT
gi|18 : -----TAGAGAAAA---AAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGA-----AAGTCcacattatgatgtacgtacatgtacgtatttacaagaccttgtacatta
gi|19 : caaattgtgccaccctatgctaTGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATATTAAACTACTGCTGACTCTC-GAT-AACTCAAATTTCAA-cgagtca
gi|2 : TACG---------------------TT----TT----TTTCTTATTTCTCAGGTA--A--T----TGACT----------AA-------------GAACTTTATCGT--GCA-TA----AATAAGA----AAATAAAT--TATTTGAAAGTTTATATTA--TTTTATTTGTGTT-T-CTTT--TAGTG-C-GAGAT-G--------A-----------ACA----------TG----T-----A-----TTTACAAAACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCAA--CAATACCAAAAAAAAA------AAAGATAAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGGTTCGAGCATATCTCTAATTTATTGTCCTCATAAATTATTGTCTCAAAATCATCGTT-TCAAACT-TACTCTCGTATG-GTCC---TCG--CAAAACGA--TCAT--ACA-TTTTTTTCATGCACGTACGTA------GTCGATTAT-GCACAGATCC----AA-AGCA-A-T-GC-TCAAGTGTGAAG--TGATAATTGACCAATTAAA-CCATTA-AATCCTTACCTGTGTCCACCCTATCAA--AGCAGCACGGGC---TG-CGTGTTACCTTT-GT-AAACCTTTAATTG-C-CTTTGCCACACTTCTCTCGGGCGTCCA----------GGCAAG-TCCAAGCG-GAAATAAT-TAGACACTTTGTTG-A--CTTTGTATAAACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCA
gi|20 : -A-AA-AATA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAAC--TATCCATCC-AACAA--GG
gi|21 : aacT---TACCTGTATCCACCCTATCTA--AGCAGCACGGGC---TG-TGTGTTACCTTT-G-TAAACCTTTAATTG-C-C
gi|24 : TGAAATACAGGTGACTCTC-GAT-AACTCGAA
gi|3 : AGTTCAA-TGCGACCCCTTCGAGAACGTTTAGTGATCAAGAG-TTTCCA-AG-AGATCGAAAA-CAAGTCCA----ATT--TATGAATTAAA-GGTTTGC----CGTGACCATT-ATGG-TTTCGGATTTTAATAGCAACCGGGG----TGTCATATACAAACATCCTGGCA----TTT-GCTTCGAGA------------------TG----TTGGTCCTTCGTATTTTTA-GGTA--A-ATGT--CAACG----------AAGTTCAATCACGCTGAACTTCATTTCTTGCA-TTCGCTGATAAAA----A----TAT--T-TTTAAAGGTTTATGT-A--TTT-ATTT-ATTTCT-TTTTC-TCATGATTAAGAT-ACATGTAGCATAT-A------ACA----------TG----T-----ACATATTTTACAAGACACATTTCTC--AAACATATACAACAGTTTTAAACCATCACTAAg
gi|3 : AGTCGCTTAACACAAAGCAACTATTCCTTATAAAT--GATATTTTCTTGG------CATACCTCT-G----------------ATTA-------------AT-ATTCTCAAAAT-TACTGTCACATGTGTCGAAGTC---C-AAACGAAGTCATTCAAATTTTT----ATCTAC------A------GTCGAATCTAG---GGACTATAA-AA-AACA-AAA-GCGCCAGGCGAGAGGGTTG--AATC-ACCAATAAAG-C------AAT---TAtgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaatattctcaaaattactgtcacatgtgtcgaagtccaaacgaagtcattcaaatttttatctacagtcgaatctagggactataaaaaacaaaagcgccaggcgagagggttgaatcaccaataaagcaatta
gi|4 : agttcaatgcgaccccttcgagaacgtttagtgatcaagagtttccaagagatcgaaaacaagtccaatttatgaattaaaggtttgccgtgaccattatggtttcggattttaatagcaaccggggtgtcatatacaaacatcctggcatttgcttcgagatgttggtccttcgtatttttaggtaaatgtcaacgaagttcaatcacgctgaacttcatttcttgcattcgctgataaaaatatttttaaaggtttatgtatttatttatttctttttctcatgattaagatacatgtagcatataacatgtacatattttacaagacacatttctcaaacatatacaacagttttaaaccatcactaatgtatacacacacagcatcaatcattatcaatttcaATTTTCTCAAAATCATCGT-CTCAAAATATA-TCTTGCATG-GTC----TCGGCCAAAACAA--TCAT--AAA-TTTT----ATTCAT------ACACGTAGTCGATTAT-ACTCAGAACCT-ATGC-AACG-CATTGC-TCAGGTGAGAAG--TGATAATTGACCAATTAAA-CTATCAAAATCGTTACCTGCGTCCACCCTATCAA--AGCAGCGCGGGC---AG--ACGTTTCCTTT-GT-AAACTTTGAATTG-C-CTTCGCCACGCACCCCTCGTGCGTCCA----------GGTAAG-TCCAAGCGCGGAATAAT-TAGAC-CTTTGTTG-A--TGTTATGTATACTCTATGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCTAA-TTCACTTCGAGAGATCG-------CC------------CGTTTCTC--GAGATCGAGAGTAAATTTGCTTA------CTTATATAGAG-AAA---AAAAATC-GGGACCGGGACTTCACTTCGAGAG
gi|5 : caaaacA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAACTAT--CCATCCAA-CAA--GG-------------TGATGTGTCATCTATAG--AAACACCTAATTAACACATC-CCA-GCAAGTCCCAGGCATTTACTGTGAGGAAGGTAAGGTCCAAGAA-AAAATAAC-TACACACTTCATTG-ATACAGTGTGTATGCTCTACCACCACTTCAGGGAATCGAGGGTGAAAAACAATGAACTAATG-TTTTACTGGACCCAAAGTTTACTTTGAGAGATTGAAAG--TTCAAGAGA--------T---TC----TATC------AAAGTTATATA------TA----TAGAGAAAA---AAATAT---GAGCTGTGATTTCACTTTGAGAAATCGAGAACTTTTTTAAAAGAGATCGAAGTTTGAGCCATGGA-----GAGTTACCTGAACTTtc
gi|6 : TACAGGGGACTCTC-AAT-A-------GTTCAA-GC-GACCTTGAGAA-AACTTAAAGTGATCAAGAG-TT--CA-AG-AGATCGAAAAACAAGTCAA----ATT--TAGAAATTAAA-GGT---TTGCGTG--ACCATT-ATGG-TT-CGGATTTAA-TAGCAACCGGGGTGTATATT---TA-CAACATCCTGGCATTGCTTC-GAGATGT--------------------TG----TC----CTTCGTATTTTTA-GGTA--A-ATGTCACGAATTCAAC-----AA-------CGCT--GAACTTCATCTT--GAATTAGC--GATAAAA------ATAT-T--T-TTTAAAGGTTTATGT-A--TTT-ATTT--ATTCT-TTTC--TCATA-TTAAGAT-AC-------ATGT-ACATAT-ACA----------TGTACAT-----A-----TTTACAAGACAAATTTC-TCAAAtttgccagtgtagtgtataaacatcattatgg
gi|7 : AGTCGCTTAACACAAAG-CACTAATTCTTATAAAT--GATATTTTCTTGG------CATACCTCTAG----------------ATTAT---------------ATTCTCAAAAT-TACTGTC-CATT-GTCAAG-TC---CAAA-CAAG-TCATC-AAA-TTTT----ATCTAC------A------GTCGA--ATT-CTAGGACTAT-A-AA-AACA-AA--GC-GCAGGCGAGAGGGTTG--AATCACCCAACTAAA-C------AAT---TAAC--AATCCACTCCA-CAA--GGAAACACAGGCAAAT--TGTGCCACCTAT-GCTc
gi|8 : aacaaagttttaccatcactaattatacacaaagcacaatcattacaatttcaG--ACCATTTACGG-TT-CAGATTTTA-CCGTAACCGGAA---ATTGT---TATCAAC-----GACA----TCT--ATACGTTTTGTTTTTGTTTTTTTTTTTGGTTTTT----TTTCTTATTCCTCAGGTA--ATAT----TGACT----------AA-------------GAACTTTATCGT--GCA-TA----AATAAAATAAAAAATACATGTTATTTGAAAGTTCATAT-A--TTT-ATTT--GTTCTCTTTT--TAGTG-CTGAGAT-A-------------A------ACG----------TG----T-----AT----TTTACAAAACACGTTTCA-CAAAACAT-T
gi|9 : TT------ATCGA-----GAGTCACCTGTACTtt
gi|9 : tgatG--ACCATT-ACAT-TT-AAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAACA-----A-A----GTT-GATATG---------------------Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccattacatttaagattttacagtaactggaaatgtttaccaacaaagttgatatgtt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTGTCACTAACTATACACTGTACAAGCATAATTAATCGTCACAATTCCCCGTAGCTTTAAGCACACGTTCTACTAAGCAGCAATGTTTCCTTGGCAATGTCT
Unaligned ( gi|22 ): TCACATTATGATGTACGTACATGTACGTATTTACAAGACCTTGTACATTACGAC
Unaligned ( gi|23 ): TAAGCCCAAATGTCCAAAAACTGCTGATAAAATTACTAATAAA
Alignments
lowQualScore : 222 11 222222 1111 1 11 11111 11 333333333333 1111 111 33333 1111 888888888888888888888888888888888 11 22222 5555555555555555555555555 1111 2222222222222222 11 11 11 88888888888888888888888888888888888 1111111111111111 222 1 11 1 333333 1 1 2 11 444444 666666666666666666 111111111111 44444444444 11 11 1111 3333333333333 2222 22222 11 11 333333 111 1 1111111 22 111 4444444444 1 1 1 1111 1 1 1 99999999999999999999999999999999 666666666666 1 111 55555555555555555555555555 22222
lowQualScore : 000 88 1 1 1 999999 1 8 8 0 0000 22 8 0 11 9 4 8 11 8 8 6 0 77777 11 8 777777777777 5 0 5 5 1 8 4444 444 3 66666 7777 8 000000000000000000000000000000000 55 99 6 44444 2222222222222222222222222 11 66 5 7777 9999999999999999 66 1 5 11 5 99 2 5 11 5 77777777777777777777777777777777777 8888888888888888 2 444 8 0 33 6 0 888888 3 3 1 8 0 1 1 88 1 1 333333 777777777777777777 555555555555 5 0 8 1 3 8 99999999999 0 99 99 0 8 7777 1 7777777777777 6 2222 1 9999 6 33333 66 1 8 00 66 1 5 000000 777 0 5555 3 8 77 0 8888888 6 11 111 1 2 2 11 3333333333 0 0 0 3 2 4444 0 0 3 0 0 0 7 99999999999999999999999999999999 6 111111111111 0 444 99 0 2 66666666666666666666666666 1 00000
lowQualScore : ... .. . . . ...... . . . . .... .. . . .. . . . .. . . . . ..... .. . ............ . . . . . . .... ... . ..... .... . ................................. .. .. . ..... ......................... .. .. . .... ................ .. . . .. . .. . . .. . ................................... ................ . ... . . .. . . ...... . . . . . . . .. . . ...... .................. ............ . . . . . . ........... . .. .. . . .... . ............. . .... . .... . ..... .. . . .. .. . . ...... ... . .... . . .. . ....... . .. ... . . . .. .......... . . . . . .... . . . . . . . ................................ . ............ . ... .. . . .......................... . .....
lowQualScore : 555 55 0 0 0 555555 0 0 0 8 5555 00 8 0 22 8 2 0 00 0 0 0 6 88888 00 0 444444444444 7 4 7 7 4 0 8888 000 2 44444 0000 0 000000000000000000000000000000000 88 22 7 00000 0000000000000000000000000 66 99 0 5555 8888888888888888 66 0 0 99 0 55 2 0 99 0 33333333333333333333333333333333333 1111111111111111 2 888 0 0 88 5 8 333333 3 3 4 0 0 4 4 55 0 0 555555 555555555555555555 666666666666 0 8 0 0 2 0 00000000000 8 00 00 6 0 0000 4 0000000000000 0 8888 4 1111 7 00000 77 4 7 66 99 4 7 777777 555 7 3333 9 7 99 8 3333333 7 22 000 0 5 5 22 8888888888 0 0 0 2 0 8888 2 2 2 0 0 0 3 33333333333333333333333333333333 7 777777777777 6 000 44 6 5 22222222222222222222222222 4 00000
consensus : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTATCTC--GCA-TA----GATAAAA----AGATATAT--T-TTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGAT-A--------ACGT-A------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA------AAAAA-AAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNA--TCG--CAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
Reference ( family-162 ) : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTATCTC--GCA-TA----GATAAAA----AGATATAT--T-TTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGAT-A--------ACGT-A------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA------AAAAA-AAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNA--TCG--CAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
gi|1 : TGTATT---TCTGATTAAAATCATTTTCATATGGTTAACTG------ATAGTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACAA-AACTTCGAGAGATCGAGAGGTT--CG-AG-AGATCGAAAGTCGACTTAA-----TC--CGGAAATCGAA-TGT---C----CG--ACCATA-ACGG-TT-CAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAAC-----GACA----TTTAGATACG---------------------TG----TT----TTTCTTATTTCTC-AGTA--A-AT----TGACT----------AA-------------GAACTT-ATCGT--GCA-TA----AATAAGA----AAATAAAT--A-TTTGAAAGTTTTTAT-G--TTT-ATTT---TTCT-CTTT--TAGTG-CTGAGA-------------GTGA------ACG----------TG----T-----A-----TTTACAAAACGTATTTCATTAAAACGT-TAC-ACTGTCGCAA--CATCACAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAGAGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGAT-CGA-TCTATCTCTAA----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTTTCGCATG-GTCT---TTG--C-AAACAA--ACAT--ACA-TTTT----ATTCAT------A------GTGGATCATTGCGCAGATCCT-A-AACAGCACCAT-GC-TCAAGTGAGAGAAGTGATAATTGACC-ATTAGATC------AAT---TACCTGTGTCCACCCTATCAAACGG--GCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-G-CATCGCCACGCTCCTCTCGGGTGTCCA----------GGTAAG-TCCAAGCG-GAAATAATATAGACACTTTGTTGTA--TGTTTTGTATACTC-ACGACCACTTCGAAAGATCGAGAGTGAAAAACAATGAAAT-ATGTTTTTACGGGACCCAAA-TTCACTTCGAGAG-TCGAGAACTTCGGAGAGATCGAACTGT---TCGAGAGATCGAGAGTAAATTTGCTTAGTTATTC-----TAGAG--AA---AAAAATCGGGGACCGGGACTTTACTTCGAGAGATCGA-AGGTT-------------CG-AGTT------ATCGA-----GAGTCACCTGTATTT
gi|10 : TCTTATTTTTA-GATATAA-AT----TGACTTGCTTTTGACAA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGACAT------TCT-AAAGTTAACAT-A--TTT-GTTTGGGTTTT-TTCC--TCATG-TTAAGATAA--------ACGT-A------ATGCATACATGTATG----T-----A-----TTCACAAGA
gi|11 : ----------AA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGACAT-T--C-T---AAAGTTAACAT-AATTTT-GTTTGGGTTTT-TTTTCCTCATG-TTAAGATAA--------ACGT-A------ATGCATACATGTATG----T-----A-----TTCACAAGAgaaatttc
gi|12 : c----------AA-------CACG--GAACTTTTTCTC--GCA-TA----GATAAAG----AGA---AT--T-CT--AAAGTTAACAT-AT-TTT-GTTTGGGTTTT-TTTC--TCATG-TTAAGATAA--------ACGT-AATGCATACA----------TG----TATGTAA-----TTCACAAGAgaattcattttccacatgc
gi|13 : c-----TAGAGAAAAAAAAAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGAAGTCCGAGTCACgaattcattgttccacatgc
gi|14 : gcaaattgtgccacctatgctaGCGACTTTCTGATTAAGTTGAAGTTCAAGGG-GACCAAGA-GA-AACTTCTAG-------GAG-TA--CGCAGAAAATCGAAAGTCGACTCCATCTCATTCACGGAAATCGAATGTT---C----CT--ACCATT-ATGGCTC-CAGATTtgcatgagagtcgcccatatctagaaccctacatt
gi|15 : TGAGAT-G--------A-GT----------G----------TG----T-----A-----TTGACAAGACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCGA--CAT-AC--AAACAAAA------AAAAT-AAAGCAGAG-GAAGAGTCGCTTTAAACAAAG-AA-TAAACGTTT
gi|16 : AG-TT--CA-AG-AGATCGAAAGTCAAGTCAA----ATC--TGGAATTTAAA-GGT----------------TT---GG-TT-CAGATT
gi|18 : -----TAGAGAAAA---AAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGA-----AAGTCcacattatgatgtacgtacatgtacgtatttacaagaccttgtacatta
gi|19 : caaattgtgccaccctatgctaTGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATATTAAACTACTGCTGACTCTC-GAT-AACTCAAATTTCAA-cgagtca
gi|2 : TACG---------------------TT----TT----TTTCTTATTTCTCAGGTA--A--T----TGACT----------AA-------------GAACTTTATCGT--GCA-TA----AATAAGA----AAATAAAT--TATTTGAAAGTTTATATTA--TTTTATTTGTGTT-T-CTTT--TAGTG-C-GAGAT-G--------A-----------ACA----------TG----T-----A-----TTTACAAAACGTGTTTCAC-AAAACGT-TAC-ACTGTCGCAA--CAATACCAAAAAAAAA------AAAGATAAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGGTTCGAGCATATCTCTAATTTATTGTCCTCATAAATTATTGTCTCAAAATCATCGTT-TCAAACT-TACTCTCGTATG-GTCC---TCG--CAAAACGA--TCAT--ACA-TTTTTTTCATGCACGTACGTA------GTCGATTAT-GCACAGATCC----AA-AGCA-A-T-GC-TCAAGTGTGAAG--TGATAATTGACCAATTAAA-CCATTA-AATCCTTACCTGTGTCCACCCTATCAA--AGCAGCACGGGC---TG-CGTGTTACCTTT-GT-AAACCTTTAATTG-C-CTTTGCCACACTTCTCTCGGGCGTCCA----------GGCAAG-TCCAAGCG-GAAATAAT-TAGACACTTTGTTG-A--CTTTGTATAAACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCA
gi|20 : -A-AA-AATA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAAC--TATCCATCC-AACAA--GG
gi|21 : aacT---TACCTGTATCCACCCTATCTA--AGCAGCACGGGC---TG-TGTGTTACCTTT-G-TAAACCTTTAATTG-C-C
gi|24 : TGAAATACAGGTGACTCTC-GAT-AACTCGAA
gi|3 : AGTTCAA-TGCGACCCCTTCGAGAACGTTTAGTGATCAAGAG-TTTCCA-AG-AGATCGAAAA-CAAGTCCA----ATT--TATGAATTAAA-GGTTTGC----CGTGACCATT-ATGG-TTTCGGATTTTAATAGCAACCGGGG----TGTCATATACAAACATCCTGGCA----TTT-GCTTCGAGA------------------TG----TTGGTCCTTCGTATTTTTA-GGTA--A-ATGT--CAACG----------AAGTTCAATCACGCTGAACTTCATTTCTTGCA-TTCGCTGATAAAA----A----TAT--T-TTTAAAGGTTTATGT-A--TTT-ATTT-ATTTCT-TTTTC-TCATGATTAAGAT-ACATGTAGCATAT-A------ACA----------TG----T-----ACATATTTTACAAGACACATTTCTC--AAACATATACAACAGTTTTAAACCATCACTAAg
gi|3 : AGTCGCTTAACACAAAGCAACTATTCCTTATAAAT--GATATTTTCTTGG------CATACCTCT-G----------------ATTA-------------AT-ATTCTCAAAAT-TACTGTCACATGTGTCGAAGTC---C-AAACGAAGTCATTCAAATTTTT----ATCTAC------A------GTCGAATCTAG---GGACTATAA-AA-AACA-AAA-GCGCCAGGCGAGAGGGTTG--AATC-ACCAATAAAG-C------AAT---TAtgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaatattctcaaaattactgtcacatgtgtcgaagtccaaacgaagtcattcaaatttttatctacagtcgaatctagggactataaaaaacaaaagcgccaggcgagagggttgaatcaccaataaagcaatta
gi|4 : agttcaatgcgaccccttcgagaacgtttagtgatcaagagtttccaagagatcgaaaacaagtccaatttatgaattaaaggtttgccgtgaccattatggtttcggattttaatagcaaccggggtgtcatatacaaacatcctggcatttgcttcgagatgttggtccttcgtatttttaggtaaatgtcaacgaagttcaatcacgctgaacttcatttcttgcattcgctgataaaaatatttttaaaggtttatgtatttatttatttctttttctcatgattaagatacatgtagcatataacatgtacatattttacaagacacatttctcaaacatatacaacagttttaaaccatcactaatgtatacacacacagcatcaatcattatcaatttcaATTTTCTCAAAATCATCGT-CTCAAAATATA-TCTTGCATG-GTC----TCGGCCAAAACAA--TCAT--AAA-TTTT----ATTCAT------ACACGTAGTCGATTAT-ACTCAGAACCT-ATGC-AACG-CATTGC-TCAGGTGAGAAG--TGATAATTGACCAATTAAA-CTATCAAAATCGTTACCTGCGTCCACCCTATCAA--AGCAGCGCGGGC---AG--ACGTTTCCTTT-GT-AAACTTTGAATTG-C-CTTCGCCACGCACCCCTCGTGCGTCCA----------GGTAAG-TCCAAGCGCGGAATAAT-TAGAC-CTTTGTTG-A--TGTTATGTATACTCTATGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCTAA-TTCACTTCGAGAGATCG-------CC------------CGTTTCTC--GAGATCGAGAGTAAATTTGCTTA------CTTATATAGAG-AAA---AAAAATC-GGGACCGGGACTTCACTTCGAGAG
gi|5 : caaaacA-AA--GC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAACTAT--CCATCCAA-CAA--GG-------------TGATGTGTCATCTATAG--AAACACCTAATTAACACATC-CCA-GCAAGTCCCAGGCATTTACTGTGAGGAAGGTAAGGTCCAAGAA-AAAATAAC-TACACACTTCATTG-ATACAGTGTGTATGCTCTACCACCACTTCAGGGAATCGAGGGTGAAAAACAATGAACTAATG-TTTTACTGGACCCAAAGTTTACTTTGAGAGATTGAAAG--TTCAAGAGA--------T---TC----TATC------AAAGTTATATA------TA----TAGAGAAAA---AAATAT---GAGCTGTGATTTCACTTTGAGAAATCGAGAACTTTTTTAAAAGAGATCGAAGTTTGAGCCATGGA-----GAGTTACCTGAACTTtc
gi|6 : TACAGGGGACTCTC-AAT-A-------GTTCAA-GC-GACCTTGAGAA-AACTTAAAGTGATCAAGAG-TT--CA-AG-AGATCGAAAAACAAGTCAA----ATT--TAGAAATTAAA-GGT---TTGCGTG--ACCATT-ATGG-TT-CGGATTTAA-TAGCAACCGGGGTGTATATT---TA-CAACATCCTGGCATTGCTTC-GAGATGT--------------------TG----TC----CTTCGTATTTTTA-GGTA--A-ATGTCACGAATTCAAC-----AA-------CGCT--GAACTTCATCTT--GAATTAGC--GATAAAA------ATAT-T--T-TTTAAAGGTTTATGT-A--TTT-ATTT--ATTCT-TTTC--TCATA-TTAAGAT-AC-------ATGT-ACATAT-ACA----------TGTACAT-----A-----TTTACAAGACAAATTTC-TCAAAtttgccagtgtagtgtataaacatcattatgg
gi|7 : AGTCGCTTAACACAAAG-CACTAATTCTTATAAAT--GATATTTTCTTGG------CATACCTCTAG----------------ATTAT---------------ATTCTCAAAAT-TACTGTC-CATT-GTCAAG-TC---CAAA-CAAG-TCATC-AAA-TTTT----ATCTAC------A------GTCGA--ATT-CTAGGACTAT-A-AA-AACA-AA--GC-GCAGGCGAGAGGGTTG--AATCACCCAACTAAA-C------AAT---TAAC--AATCCACTCCA-CAA--GGAAACACAGGCAAAT--TGTGCCACCTAT-GCTc
gi|8 : aacaaagttttaccatcactaattatacacaaagcacaatcattacaatttcaG--ACCATTTACGG-TT-CAGATTTTA-CCGTAACCGGAA---ATTGT---TATCAAC-----GACA----TCT--ATACGTTTTGTTTTTGTTTTTTTTTTTGGTTTTT----TTTCTTATTCCTCAGGTA--ATAT----TGACT----------AA-------------GAACTTTATCGT--GCA-TA----AATAAAATAAAAAATACATGTTATTTGAAAGTTCATAT-A--TTT-ATTT--GTTCTCTTTT--TAGTG-CTGAGAT-A-------------A------ACG----------TG----T-----AT----TTTACAAAACACGTTTCA-CAAAACAT-T
gi|9 : TT------ATCGA-----GAGTCACCTGTACTtt
gi|9 : tgatG--ACCATT-ACAT-TT-AAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAACA-----A-A----GTT-GATATG---------------------Tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccattacatttaagattttacagtaactggaaatgtttaccaacaaagttgatatgtt
blockSeqs : GCT . C A G CAAACA T T T GGG AA C G CT T A . TC C A T TCTCA CA T TTGCCGTG T C T A A TGTA ATA C ATCCT TTGC . TTTTGTTTTTGTTTTTTTTTTTGGTTTTT CA TA T GTCAC TGCTTTTGACAACACG TT TT T CGCT TAAAAAATACATGTTA TG A T AT T GG T C CC A AAACGTAATGCATACATGTA TATGTAA T AC A A AC T C . T . T C C A T TT G A TTCGAG AATTTATTGTCCTCATAA TTGTCTCAAAAT C A C G T GAAGTCC AG TC T TTTC G GTACGTA T GCA T TAA . CATT GC T T AT AT T . TATCAA CCT TGTG T T . C AAATT A CT ACA T G C TT CTGTGAGGAA G C . A T ATA T A . G A AAAGTTCAAGAGATTC G CTTATA A AAA A G TTTTAAAAGAGATCGAAGTTTGAGCC T AGTCC
blockSeqs : . . TGC CC G . TT T A . . . . T A . . TTGCGTG . . . A . A . T ATCCT . . AGATGTTGGTC CA . . GTC AAGTTCAATCACGCT TT . . GC AAATAAATTA TA A . T . GG T . C . AAACGTAATGCATACATGTA TACATAT T AC . . . C T . . . T . C A T . T T . AG TTTTCTCAAAAT C . G A . TCGGCCA G C . . C ACACGTA A ACT C TAT . AAA T T A GT AT T . CATTA CGT TGTA T A . C TGAT . T C T G C AC . . . . A T A T . . . A CCCGTTTCTCG . TA A . A G TCCGAG T .
blockSeqs : . . GC TT . . AA . . . . . . A A . . CCT . . . G . A . C A . . TTGTC A . . T TCAACAACGCT TT . . . AGACATTC TA A . . . GG T . . . ACATGTAGCATATAACA TACATA C TC . . . . . A . . T A . T T . G T . . C G . AAGTCCA . . . . T A T TCT A TA . AT A C A AT A C . . . TGCG T T . C TGC . T C A . . AA . . . . . C A T . . . A . G G TCCGAG G .
blockSeqs : . . . . . . . A . . . . . . G . . . . . . . TTTT A . . T AACACG TA . . . AGACAT TG T . . . GT C . . . AAACGTAATGCATACA TAT A TC . A . . T A . . . G . . CTCGCA . . . . C A . AG C . . AA T T A GT A T . . . TAT A T . A TGT . T C . . . C .
blockSeqs : . . . A A . . T AACACG CA . . . AGAATT T T . . . A C . . . ACATGTACATATACA TA C AC . AA A T . . . T . . . TA C . . . AG . .
blockSeqs : . . . A AA CA . . . ATATTT . T . . . . C . . . GAGTG TA AA G C . . . C . . . AA . . .
blockSeqs : AA TA . . . ATATT . C . . . . . . . . GAACA TA .
blockSeqs : AAACG TA
blockSeqCons : A**** A**** TTGTT**************************** TN ATATTN********** GG AAACGTAATGCATACA******************* AC* NAGGCCA**** NCT* TA** AA*** AT ** T* A*
originalCons : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGACA----TTT-GATACG---------------------TG----TT----TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTATCTC--GCA-TA----GATAAAA----AGATATAT--T-TTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGAT-A--------ACGT-A------ACG----------TG----T-----A-----TTTACAAGACGCGTTTCACCAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA------AAAAA-AAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNA--TCG--CAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATTGCNCGGACCCT-A-AA-AACA-AAT-GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GTTAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
finalCons : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGAG-TT--CG-AG-AGATCGAAAGTCGAGTCAAA----TT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACA----GACA----TTT-GATACGTTGTT----------------------------TTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTTTNTCTC--GCA-TA----GATAAAAATATTN----------TTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGATAAACGTAATGCATACA-------------------TG----T-----A-----TTTACAAGACGCGTTTCAC-AAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAA------AAAAA-AAAGCAGAG-GCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNAGGCCA----AAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTATNCT-CGGACCCTA--AA-AACAAA---GC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGC---TG-CGTGTTACCTTT-GT-AAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATCA-GGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTGTCACTAACTATACACTGTACAAGCATAATTAATCGTCACAATTCCCCGTAGCTTTAAGCACACGTTCTACTAAGCAGCAATGTTTCCTTGGCAATGTCT
Unaligned ( gi|22 ): TCACATTATGATGTACGTACATGTACGTATTTACAAGACCTTGTACATTACGAC
Unaligned ( gi|23 ): TAAGCCCAAATGTCCAAAAACTGCTGATAAAATTACTAATAAA
Alignments
lowQualScore : 222 11 222222 1111 1 11 111111 11 333333333333 1111 111 9999999999999999999999999999999999999999999999999999999 11 22222 5555555555555555555555555 1111 333333333333333333333333333 1 11 11 333333333333333333 11111111111 1 11 1 1 4444444 2 11 444444 666666666666666666 111111111111 111 11 11 11 1111 3333333333333 11 111111 11 11 333333 111 1 11 111 4444444444 1 1 1 1111 1 1 1 99999999999999999999999999999999 666666666666 1 111 55555555555555555555555555 22222
lowQualScore : 000 88 1 1 1 999999 1 8 8 0 0000 22 8 0 11 9 4 8 11 8 8 6 888888 11 8 777777777777 5 0 5 5 1 8 4444 444 3 5555555555555555555555555555555555555555555555555555555 55 99 6 44444 2222222222222222222222222 66 1 5 7777 66 222222222222222222222222222 1 5 66 0 99 2 5 11 5 1 777777777777777777 33333333333 2 6 8 0 33 6 0 3 3333333 1 8 0 1 1 88 1 1 333333 777777777777777777 555555555555 5 0 8 1 3 8 000 00 0 99 99 0 8 7777 1 7777777777777 44 8 1 6 1 444444 6 5 77 2 66 1 8 00 66 1 5 000000 777 0 5555 3 8 77 0 44 8 111 1 2 2 11 3333333333 0 0 0 3 2 4444 0 0 3 0 0 0 7 99999999999999999999999999999999 6 111111111111 0 444 8 0 2 66666666666666666666666666 1 00000
lowQualScore : ... .. . . . ...... . . . . .... .. . . .. . . . .. . . . ...... .. . ............ . . . . . . .... ... . ....................................................... .. .. . ..... ......................... .. . . .... .. ........................... . . .. . .. . . .. . . .................. ........... . . . . .. . . . ....... . . . . . .. . . ...... .................. ............ . . . . . . ... .. . .. .. . . .... . ............. .. . . . . ...... . . .. . .. . . .. .. . . ...... ... . .... . . .. . .. . ... . . . .. .......... . . . . . .... . . . . . . . ................................ . ............ . ... . . . .......................... . .....
lowQualScore : 555 55 0 0 0 555555 0 0 0 8 5555 00 8 0 22 8 2 0 00 0 0 0 444444 00 0 444444444444 7 4 7 7 4 0 8888 000 2 2222222222222222222222222222222222222222222222222222222 88 22 7 00000 0000000000000000000000000 99 0 0 5555 99 888888888888888888888888888 0 0 99 0 55 2 0 99 0 9 888888888888888888 44444444444 2 7 0 0 88 5 8 3 3333333 4 0 0 4 4 55 0 0 555555 555555555555555555 666666666666 0 8 0 0 2 0 444 66 8 00 00 6 0 0000 4 0000000000000 22 0 0 2 4 111111 7 7 99 1 77 4 7 66 99 4 7 777777 555 7 3333 9 7 99 8 44 0 000 0 5 5 22 8888888888 0 0 0 2 0 8888 2 2 2 0 0 0 3 33333333333333333333333333333333 7 777777777777 6 000 0 6 5 22222222222222222222222222 4 00000
consensus : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGA-GTT--CG-AG-AGATCGAAAGTCGAGTCNA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACATCCTGGCA----TTT-GAT-----ACG--------------------TTGG---TTTTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTT--TNTCTCGCA-TA----GATAA--AA----------A--TA--T---TNTTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTAAGATAAACGTA---ATGCAT---AC----ATGT-----A-----TTTACAAGACGCGTTTCA-CAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAAAAAAA-AAAGCAGA-------GGCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNNNGCCAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTA-TNCNCGGACCCT-A---AA-AGC-A--ANGC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGCTG-CGTGTTACCTTTG-TAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATC-GGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
Reference ( family-162 ) : TGTATTGCTTCTGATTGAANTCATTNTCATGCGGCTAGNTGCAAACAATANTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCNNGACGA-AACTTCNAGTGATCGAGA-GTT--CG-AG-AGATCGAAAGTCGAGTCAA----ATT--CGGAAATCGAA-GGT---C----CG--ACCATT-ACGG-TT-CGGATTTTA-CAGTAACCGGAA---ATGTT---TACCAACA----GACA----TTT-GAT-----ACG--------------------TTG----TTTTTCTTATTTCTC-GGTA--A-AT----CGACT----------AA-------CACG--GAACTT--TNTCTCGCA-TA----GATAA--AA----------A--TA--T---TNTTTGAAAGTTNATAT-A--TTT-ATTTGGGTTCT-TTTT--TCGTG-TTGAGATAAACGTA---ATGCAT---AC----ATGT-----A-----TTTACAAGACGCGTTTCA-CAAAACGT-TAC-ACTGTCGCAA--CATCACNAAAAAAAAAAAAAA-AAAGCAGA-------GGCAGAGTCGCTTTACACAAAG-AACTAAACGTTTCAAATTTGACANTCTCTNGGT-CGA-CATACCTCTAG----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTNTCGCATG-GTCNAGGCCAAAACGA--TCAT--AAA-TTTT----ATCCAC------A------GTCGATTA-TNCTCGGACCCT-A---AA-AAC-A--AAGC-NCAGGCGAGAGGATTGATAATCGACCAATTAAA-C------AAT---TACCTGTGTCCACCCTATCAA--GGCAGCACGGGCTG-CGTGTTACCTTTG-TAAACCTTTAATTG-C-CNTCGCCACGCNCCTCTCGGGCGTCCA----------GGTAAG-TCCAAGCG-GAAATAAT-TAGACACTTCGTTG-A--CGTTGTGTATACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCACTTCGAGAGATCGAGAG--TCCGAGAGA------CGT---TC--GAGATCGAGAGTAAATTTGCTTA------C-----TAGAGAAAA---AAAAATC-AGGACCGTGATTTCACTTCGAGAGATCGAGAACTTT-----------CCG-AGTT------ATCGA-----GAGTCACCTGTACTT
gi|1 : TGTATT---TCTGATTAAAATCATTTTCATATGGTTAACTG------ATAGTAAACTACAGGTGACTCTC-GAT-AACTCGAAGTTCAA-GG-GACCAAGACAA-AACTTCGAGAGATCGAGAGGTT--CG-AG-AGATCGAAAGTCGACTT-A----ATC--CGGAAATCGAA-TGT---C----CG--ACCATA-ACGG-TT-CAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAAC-----GACA----TTTAGAT-----ACG---------------------TG----TTTTTCTTATTTCTC-AGTA--A-AT----TGACT----------AA-------------GAAC-T--TATCGTGCA-TA----AATAA--GA----------A--AA--TAAATATTTGAAAGTTTTTAT-G--TTT-ATTT---TTCT-CTTT--TAGTG-CTGAGA-----GTG---A--------AC----GTGT-----A-----TTTACAAAACGTATTTCATTAAAACGT-TAC-ACTGTCGCAA--CATCACAAAAAAAAAAAAAAA-AAAAAAAAAAAAAAGAGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGAT-CGA-TCTATCTCTAA----------------ATTATTGTCTCAAAATCATCGTTCTCAAAAT-TACTTTCGCATG-GTCTTTGC--AAACAA--ACAT--ACA-TTTT----ATTCAT------A------GTGGATCATTGCGCAGATCCT-A---AACAGC-ACCATGC-TCAAGTGAGAGAAGTGATAATTGACC-ATTAGATC------AAT---TACCTGTGTCCACCCTATCAAACGG--GCACGGGCTG-CGTGTTACCTTTGTTAAACCTTTAATTG-G-CATCGCCACGCTCCTCTCGGGTGTCCA----------GGTAAG-TCCAAGCG-GAAATAATATAGACACTTTGTTGTA--TGTTTTGTATACTC-ACGACCACTTCGAAAGATCGAGAGTGAAAAACAATGAAAT-ATGTTTTTACGGGACCCAAA-TTCACTTCGAGAG-TCGAGAACTTCGGAGAGATCGAACTGT---TCGAGAGATCGAGAGTAAATTTGCTTAGTTATTC-----TAGAG--AA---AAAAATCGGGGACCGGGACTTTACTTCGAGAGATCGA-AGGTT-------------CG-AGTT------ATCGA-----GAGTCACCTGTATTT
gi|10 : TCTTATTTTTA-GATATAA-AT----TGACTTGCTTTTGACAA-------CACG--GAACTT--TTTCTCGCA-TA----GATAA--AG----------AGACA--T---TCT---AAAGTTAACAT-A--TTT-GTTTGGGTTTT-TTCC--TCATG-TTAAGATAAACGTA---ATGCAT---ACATGTATGT-----A-----TTCACAAGA
gi|11 : ----------AA-------CACG--GAACTT--TTTCTCGCA-TA----GATAA--AG----------AGACA--T---TCT---AAAGTTAACAT-AATTTT-GTTTGGGTTTT-TTTTCCTCATG-TTAAGATAAACGTA---ATGCAT---ACATGTATGT-----A-----TTCACAAGAgaaatttc
gi|12 : c----------AA-------CACG--GAACTT--TTTCTCGCA-TA----GATAA--AG----------A--GAA-T---TCT---AAAGTTAACAT-A--TTTTGTTTGGGTTTT-TTTC--TCATG-TTAAGATAAACGTA---ATGCAT---AC----ATGTATGTAA-----TTCACAAGAgaattcattttccacatgc
gi|13 : c-----TAGAGAAAAAAAAAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGAAGTCCGAGTCACgaattcattgttccacatgc
gi|14 : gcaaattgtgccacctatgctaGCGACTTTCTGATTAAGTTGAAGTTCAAGGG-GACCAAGA-GA-AACTTCTAG-------GA-GTA--CGCAGAAAATCGAAAGTCGACTCCATCTCATTCACGGAAATCGAATGTT---C----CT--ACCATT-ATGGCTC-CAGATTtgcatgagagtcgcccatatctagaaccctacatt
gi|15 : TGT-----A-----TTGACAAGACGTGTTTCA-CAAAACGT-TAC-ACTGTCGCGA--CAT-AC--AAACAAAAAAAAT-AAAGCAGA-------GGAAGAGTCGCTTTAAACAAAG-AA-TAAACGTTT
gi|16 : tgagatgagtgA-GTT--CA-AG-AGATCGAAAGTCAAGTCAA----ATC--TGGAATTTAAA-GGT----------------TT---GG-TT-CAGATT
gi|18 : -----TAGAGAAAA---AAAAATC-AAGACCGTGATTTCACTTTGAGAGATCAAGAACTTT-----------CCG-AG--------ATTGA-----AAGTCcacattatgatgtacgtacatgtacgtatttacaagaccttgtacatta
gi|19 : caaattgtgccaccctatgctaTGTATTGCTTTTG--TGAACTCATTATCATGCAACTAGGTGCAAACAATATTAAACTACTGCTGACTCTC-GAT-AACTCAAATTTCAA-cgagtca
gi|2 : T-----ACG--------------------TT-----TTTTTCTTATTTCTCAGGTA--A--T----TGACT----------AA-------------GAACTT--TATCGTGCA-TA----AATAAGAAA----------A--TAAAT---TATTTGAAAGTTTATATTA--TTTTATTTGTGTT-T-CTTT--TAGTG-C-GAGATGAAC---------------------ATGT-----A-----TTTACAAAACGTGTTTCA-CAAAACGT-TAC-ACTGTCGCAA--CAATACCAAAAAAAAAAAAGATAAAGCAGA-------GGCAGAGTCGCTTTACACAAAG-AA-TAAACGTTTCAAATTTAACAGTCTCTAGGTTCGAGCATATCTCTAATTTATTGTCCTCATAAATTATTGTCTCAAAATCATCGTT-TCAAACT-TACTCTCGTATG-GTCCTCGC-AAAACGA--TCAT--ACA-TTTTTTTCATGCACGTACGTA------GTCGATTA-TGCACAGATCC------AA-AGC-A--ATGC-TCAAGTGTGAAG--TGATAATTGACCAATTAAA-CCATTA-AATCCTTACCTGTGTCCACCCTATCAA--AGCAGCACGGGCTG-CGTGTTACCTTTG-TAAACCTTTAATTG-C-CTTTGCCACACTTCTCTCGGGCGTCCA----------GGCAAG-TCCAAGCG-GAAATAAT-TAGACACTTTGTTG-A--CTTTGTATAAACTCTACGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCAAA-TTCA
gi|20 : -A---AA-AAT-A--AAGC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAAC--TATCCATCC-AACAA--GG
gi|21 : aacT---TACCTGTATCCACCCTATCTA--AGCAGCACGGGCTG-TGTGTTACCTTTG-TAAACCTTTAATTG-C-C
gi|22 : GATGTACGTA------CAT---GT----ACGT-----A-----TTTACAAGAC
gi|24 : tcacattatTGAAATACAGGTGACTCTC-GAT-AACTCGAActtgtacattacgac
gi|3 : AGTTCAA-TGCGACCCCTTCGAGAACGTTTAGTGATCAAGA-GTTTCCA-AG-AGATCGAAAA-CAAGTCCA----ATT--TATGAATTAAA-GGTTTGC----CGTGACCATT-ATGG-TTTCGGATTTTAATAGCAACCGGGG----TGTCATATACAAACATCCTGGCA----TTT-GCTTCGAGATG--------------------TTGG---TCCTTCGTATTTTTA-GGTA--A-ATGT--CAACG----------AAGTTCAATCACGCTGAACTTCATTTCTTGCA-TTCGCTGATAA--AA----------A--TA--T---T-TTTAAAGGTTTATGT-A--TTT-ATTT-ATTTCT-TTTTC-TCATGATTAAGATACATGTA-----GCATATAAC----ATGT-----ACATATTTTACAAGACACATTTCT-C-AAACATATACAACAGTTTTAAACCATCACTAAg
gi|3 : AGTCGCTTAACACAAAGCAACTATTCCTTATAAAT--GATATTTTCTTGG------CATACCTCT-G----------------ATTA-------------AT-ATTCTCAAAAT-TACTGTCACATGTGTCGAAGTCCAAACGAAGTCATTCAAATTTTT----ATCTAC------A------GTCGA--A-TCTAGGGACTATAA---AA-AACAA--AAGCGCCAGGCGAGAGGGTTG--AATC-ACCAATAAAG-C------AAT---TAtgtatacacacacagcatcaatcattatcaatttcaagtcgcttaacacaaagcaactattccttataaatgatattttcttggcatacctctgattaatattctcaaaattactgtcacatgtgtcgaagtccaaacgaagtcattcaaatttttatctacagtcgaatctagggactataaaaaacaaaagcgccaggcgagagggttgaatcaccaataaagcaatta
gi|4 : agttcaatgcgaccccttcgagaacgtttagtgatcaagagtttccaagagatcgaaaacaagtccaatttatgaattaaaggtttgccgtgaccattatggtttcggattttaatagcaaccggggtgtcatatacaaacatcctggcatttgcttcgagatgttggtccttcgtatttttaggtaaatgtcaacgaagttcaatcacgctgaacttcatttcttgcattcgctgataaaaatatttttaaaggtttatgtatttatttatttctttttctcatgattaagatacatgtagcatataacatgtacatattttacaagacacatttctcaaacatatacaacagttttaaaccatcactaatgtatacacacacagcatcaatcattatcaatttcaATTTTCTCAAAATCATCGT-CTCAAAATATA-TCTTGCATG-GTCTCGGCCAAAACAA--TCAT--AAA-TTTT----ATTCAT------ACACGTAGTCGATTA-TACTCAGAACCT-ATGCAA-CGC-A--TTGC-TCAGGTGAGAAG--TGATAATTGACCAATTAAA-CTATCAAAATCGTTACCTGCGTCCACCCTATCAA--AGCAGCGCGGGCAG--ACGTTTCCTTTG-TAAACTTTGAATTG-C-CTTCGCCACGCACCCCTCGTGCGTCCA----------GGTAAG-TCCAAGCGCGGAATAAT-TAGAC-CTTTGTTG-A--TGTTATGTATACTCTATGACCACTTCGAGAGATCGAGAGTGAAAAACAATGAAAT-ATG-TTTTACGGGACCCTAA-TTCACTTCGAGAGATCG-------CC------------CGTTTCTC--GAGATCGAGAGTAAATTTGCTTA------CTTATATAGAG-AAA---AAAAATC-GGGACCGGGACTTCACTTCGAGAG
gi|5 : caaaac-A--AAGC-ACAAGTG-GTGGATTGA--ATTGACCAATTAAA-C------AAT---TAACTAT--CCATCCAA-CAA--GG----------TGATGTGTCATCTATA-GAAACACCTAATTAACACATC-CCA-GCAAGTCCCAGGCATTTACTGTGAGGAAGGTAAGGTCCAAGAA-AAAATAAC-TACACACTTCATTG-ATACAGTGTGTATGCTCTACCACCACTTCAGGGAATCGAGGGTGAAAAACAATGAACTAATG-TTTTACTGGACCCAAAGTTTACTTTGAGAGATTGAAAG--TTCAAGAGA--------T---TC----TATC------AAAGTTATATA------TA----TAGAGAAAA---AAATATG-AG--CTGTGATTTCACTTTGAGAAATCGAGAACTTTTTTAAAAGAGATCGAAGTTTGAGCCATGGA-----GAGTTACCTGAACTTtc
gi|6 : TACAGGGGACTCTC-AAT-A-------GTTCAA-GC-GACCTTGAGAA-AACTTAAAGTGATCAAGA-GTT--CA-AG-AGATCGAAAAACAAGTCAA----ATT--TAGAAATTAAA-GGT---TTGCGTG--ACCATT-ATGG-TT-CGGATTTAA-TAGCAACCGGGGTGTATATT---TA-CAACATCCTGGCATTGCTTC-GAG-----ATG--------------------TTG----TCCTTCGTATTTTTA-GGTA--A-ATGTCACGAATTCAAC-----AA-------CGCT--GAACTT--CATCTTGAATTAGC--GATAA--AA----------A--TA--T---TTTTTAAAGGTTTATGT-A--TTT-ATTT--ATTCT-TTTC--TCATA-TTAAGATACATGTACATATACAT---GT----ACAT-----A-----TTTACAAGACAAATTTCT-CAAAtttgccagtgtagtgtataaacatcattatgg
gi|7 : AGTCGCTTAACACAAAG-CACTAATTCTTATAAAT--GATATTTTCTTGG------CATACCTCTAG----------------ATTAT---------------ATTCTCAAAAT-TACTGTC-CATT-GTCAAGTCCAAA-CAAG-TCATC-AAA-TTTT----ATCTAC------A------GTCGA--A-TTCTAGGACTAT-A---AA-AAC-A--AAGC-GCAGGCGAGAGGGTTG--AATCACCCAACTAAA-C------AAT---TAAC--AATCCACTCCA-CAA--GGAAACACAGGCc
gi|8 : aacaaagttttaccatcactaattatacacaaagcacaatcattacaatttcaG--ACCATTTACGG-TT-CAGATTTTA-CCGTAACCGGAA---ATTGT---TATCAAC-----GACA----TCT--AT-----ACGTTTTGTTTTTGTTTTTTTTTTTGGTTTTTTTTCTTATTCCTCAGGTA--ATAT----TGACT----------AA-------------GAACTT--TATCGTGCA-TA----AATAA--AATAAAAAATACA--TG--T---TATTTGAAAGTTCATAT-A--TTT-ATTT--GTTCTCTTTT--TAGTG-CTGAGATAAACG------TGTAT------------------------TTTACAAAACACGTTTCA-CAAAACAT-Taaattgtgccacctatgct
gi|9 : TT------ATCGA-----GAGTCACCTGTACTtt
gi|9 : tgatG--ACCATT-ACAT-TT-AAGATTTTA-CAGTAACTGGAA---ATGTT---TACCAACA----A--A----GTT-GAT-----ATG--------------------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaccattacatttaagattttacagtaactggaaatgtttaccaacaaagttgatatgtt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): CTGTCACTAACTATACACTGTACAAGCATAATTAATCGTCACAATTCCCCGTAGCTTTAAGCACACGTTCTACTAAGCAGCAATGTTTCCTTGGCAATGTCT
Unaligned ( gi|23 ): TAAGCCCAAATGTCCAAAAACTGCTGATAAAATTACTAATAAA