lowQualScore : 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111111111111111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111111111111111111111111111
lowQualScore : 1 3333 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 333333333 666666666666666 11 3333333333 222 222 555 11 1 1 11 1111 8888888888888888888888888888888888888888 44444 2222222 1 1111 333333333 22 44444 11111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 11111 22222222222222222222 11 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 33 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 11111111 33333333333333 11 11111 22222 11 0000000000000000000000000000000000000000000000000 1111 222 111111 111 22 3333333333333 1 1 1111 1 333333 111111111 11 3333333 22 1111111111 2 1 3 2222 22 33 999999999999999999 444
lowQualScore : 5 4444 6 6 0 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 9 111111111 66 4 66 000000000000000 4 99 7777777777 66 333 5 5 444 888 9999 8 00 4 66 5 5 5 666 1 22 3 8 6 7777 55 2222222222222222222222222222222222222222 55 4 3 77777 3 66666 2222222 6 4 1111 333333333 55 4 00 55 99999 99999 00000 0 6 4 88888888888888888888888888888888888888888888888888888888888888888888888888888888888 3 9999 22222 3 6 88 88888888888888888888 2 2 5 55 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 6 11 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 4 666 44444444 4 8 4 6666 44444444444444 11 00000 4 55555 4 55 4 7777777777777777777777777777777777777777777777777 66 1 4444 444 111111 5 666 0 00 9999999999999 4 2 2 666 3 55 8888 8 4 7 66 4 4 111111 444444444 4 22 4 7777777 33 8 4 4 88 6 9999999999 7 2 4 99 0 5 5555 22 66 222222222222222222 6 6 666
lowQualScore : . .... . . . ........................................................................................................................................................................................................................................................................................................................................... . ......... .. . .. ............... . .. .......... .. ... . . ... ... .... . .. . .. . . . ... . .. . . . .... .. ........................................ .. . . ..... . ..... ....... . . .... ......... .. . .. .. ..... ..... ..... . . . ................................................................................... . .... ..... . . .. .................... . . . .. ............................................................................................................................................................................................ . .. ........................................................................................... . ... ........ . . . .... .............. .. ..... . ..... . .. . ................................................. .. . .... ... ...... . ... . .. ............. . . . ... . .. .... . . . .. . . ...... ......... . .. . ....... .. . . . .. . .......... . . . .. . . .... .. .. .................. . . ...
lowQualScore : 0 2222 7 7 5 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2 999999999 11 4 11 222222222222222 4 33 8888888888 11 111 0 0 000 999 9999 9 99 4 11 0 7 7 333 4 55 0 0 7 4444 55 3333333333333333333333333333333333333333 00 3 6 99999 6 00000 5555555 0 0 7777 555555555 55 0 77 00 11111 99999 00000 9 0 0 33333333333333333333333333333333333333333333333333333333333333333333333333333333333 3 2222 55555 3 7 55 99999999999999999999 9 9 3 55 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 7 88 5555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 222 55555555 0 0 0 1111 77777777777777 88 00000 0 11111 0 11 0 2222222222222222222222222222222222222222222222222 11 1 7777 888 444444 0 111 5 55 6666666666666 4 3 0 333 6 00 0000 0 0 8 11 4 4 111111 888888888 4 22 4 9999999 99 9 4 4 99 0 7777777777 9 4 4 00 0 0 1111 99 44 000000000000000000 0 0 000
consensus : AACATTATATA-ATATAA-A-TNATAT-AC---TG-GGT--AC-CAATTT--TGA-TGCACC-AGATGC---GCA--TT-T--CGAC-CA----AAT-TATG-TC--TC---------T-CAG-TGA-TGCTCAA----A-CCGAAA-TGTTGGAA-----AATCCGAA--A--T-G--AAAT-GT-A--AA-CT----TTATAAAA--AAGTGA--TCA-AT-GT-AGTGCCA-AAG-A-CTGGAGCCAA-ATACT-C-GAG-GA---------G-AG--TCAGAGCTA--T-GC-TCG--------GAGG---GA-GA-TN-A-T------C-T-A--A--TTTTGATATACGAATTTCTAATTTT-NCAC-ACT--G-C--AATTAAA-A---T--ACAT--ATC-CGTATTTTCAAGCT-----AGTA-CAT--AGT-ACA-T-AGCAA-CTGGGCTG--TAGAG-A--CC-CTCGGGGAC-TAA--CAGTCCACCAG-CAG-AGGC-CTCGA-CC-GGGG-TCATAAT-TANA--AATNA----T--TAC-G--GTA-NCAAT-T---TT--GAT---GCACC--AGAT-G-CG-CGCA-TTTC--G--AC-------AA-TT-AT-G--TC--TC-----TT--CA-GTGGATG--CT-----CAAACC-GA--AA-----TGTTGGAAATC-CGAAACATNGAAT----GTTGAAA-CT----TTAT---AAAA--GTGA--TCAA--T-----G-TAGTGCC-AAAAGA-CTGGAGGG-GCCAAAT-ACTT---CG-A---AG-G-ATCAGA--GC---------TA---------TGCCTGAGG-GA-GA-TA-ATCCTT---AATTT-T-G--AT--A--TG---AATTTCTA-A-----TT----ACCAC-T--G--CAA--TTN-AA---TA-C-----A-ATATC-CGT-T-ATT--CA-AG-CT----AGTAACATA--GTACATA----GCAACTGGGCTGT---TAGA-GA--CC-CTCGGGGACTTAACAG----TCCACCA-GCAG-AGGCCTCGACCC--GGGGTCATA-GTATA---NATNA----T-TACAGG-T----AC-C--AATTTTGA--C-GCA-C-NAG-GATG-CG-C-ATTTCGA--CAAATT-AT-G-TCTC--------T-T-C-A--G-TGA-TGCT-----C-AAAC-CG-----AAAT-GT-TTGGAAATC-CGAAAC-NTG-AA-NGTTTAAACTT----T-T--A----AAA--G-TGAA---CA-A--TG-T--AGTGCCAAAAG--NTTGAGGGCCAAA-AATAC-TTC-GAAGGAATCAGA---AGC-T----AT-GCCTGA-GG-A-G-A--TAAT----C-TTAA-TTTTGATATGAAT-T-T-TAAT-TTTTACCAC--T--GC--AA-TTAAA--TA-C-------ATATC-C-GTA-TT-TCAAGC---T--NA-TAACA-TAGTAC-ATA-GCAA-CTGGGCTGTATAGAGACCC-TCGGGGAC-TAACAGTCAATACAAATATAATACAAAGTACTTG-AGTTAT
Reference ( gi|1 ) : AAAATTATAGA-ATATAA-A-TGATAT-ACCTGTGGGGTTGAC-CAATTT--TTA-TGCACCCAGATGC-ACGCA--TTGT--CGACCCA----AATCTATG-TC--TC---------T-CAG-TGA-TGCTCAA----AACCGAAACTGTTGGGATATATAATCGGTA--A--T-G--AAGTTGTTA--AA-CT----TTATAAAGTTAAGTCA--TCA-AT-GT-AGTCGCA-CAA-A-TTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAG--TCAGAGCTA--G-GC-TCG--------GAGG---GA-AAGTT-A-T------C---A--A--TTT-GACA--GG--TTTATAATTCT-TCAC-ACT--G-C--AATTAAG-A---TG-ACATG-ATC-CGTATTTTCAAGCT----TAGTA-CAT--A-T-ACA-T-AGCAA-C-GGGCTGATCAGAG-A--CC-CTCGGAGAC-TAA--CAGTCCAACAG-CAG-AGGC-CCCGA-CC-AGAG-TCATAAT-TAAA--AATCA----T--TAC-GCTGTG-ACAATATA--TT--ATT---GCACC--AGAT-G-TGTCGCA-TTTC--G--AC-------AA-TT-AT-G--TC--T------TT--CA-GTGGATG--CT-----CAAACC-CACGAA-----TGTTGGGAATC-CGAAACATTGAATG---GTTGAAA-CT----TTAT---AA----GTGA--TCAC--T-----G-CAGTGCCCAAAAGC-ATGGGGGGGGCCAAAT-ACTA---CG-A---AG-G-ATCAGA--GC---------TA---------TGCCTGAGG-GA-GA-TA-CTCCTTTGCAATTT-T-AC-ATTGA--TG---AATTTATA-A-----TT----ACCAC-T--G--CAA--T---AA---TA-C-----A-ATATC-CGT-TCATT--CACAG-C-----AG-AACATA-TATCCATAAGGCGCTTCTGGGCTGTGTTTAGA-GA--CC-CTCGGGGGAC-AACAGAGATTCC-CCA-GCAGAAGGCCTCGACCCTAAGGGCGGTA-A-ATA---TATCA----T-TAC-TG-T----AC-C--ATTTTTGA-AT-GC--C-GAG-GATG-CG-C-ATTGCGAAGCAAATT-AT-G-TCTC--------T-T-C-A--G-TG--TGCT-----C-CAAA-CG-----AAAT-GT-TTAGAAATC-CGAAAC-TTG-AA-TGTTTGAACTT----T-T--A----AAA--GTTGATCTTCA-A--T--T--AGTGCCAAAAA--GTTGAGGGCCAAA-AATAC-TAC-GAAGGAATCAGA---AGCAT----AT-GCATGA-GG-A-G-A--TAAT----C-TTAA-TTTGGATACGAAT-T-T-TAATGTTTTACCAC--T--GT--AA-TTAAA--TA-C---G---ATAT--C-GTA-TT-TCGAAC---T--TA-TAACAGTATTAC-ATG-GC-A-CTGGGCTGTATAGAGACCG-TCGGGGA--TAACAGAAATTATGAA-A-AATTAAAAGTGCTCGTATTTAT
gi|6 : AACATTGTACATACAAAA-A-TCATAT-AC------GGT--AC-CAATTT--TGA-TGCA-CCATATG---CGCA--TT-T--CGA--CA----AAT-TATG-TC--TCT--------T-CAG-TGA-TGCT-GA----ATCCGAAA
gi|4 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttATTATAT---TATAG-A-TCATA----CTATGG---TAAC-CAAATT--TGA-TGCACC-AGAGG----GTA--TT-T--CGAC--A----AAT-TATAATCGCTT---------T-CAG-TGA-TGCTTAA----A-CCGAAA-TGTTAGAA------ATCGCAA--AACTAG--AAA--GTAA--AATCT----TTATAAAA--AAGTGAACTCA-AT-GT-AGTACCAATAG-A-CTGGAGCC-AGATACTTC----------------GTAGGATCAGAGCTA--GCAT-TCG--------TATGCCTGA-GGATT-A-TACCCT-T---A--A--TTTTGATATAAA--TTTATAATTTTACCAC-TTT--G-TCAAATTAAA-A---TT-ACAT--ATC-CGTATTT--AAGCTAGT-TAGAA-CAT--AGT-ACA-T-AGCAAAT-GGGCTG--TAGCG-ATTCCGCTCGGGCACCTAA--CAGTCCACCAG-CAG-GGGC-CTCGACCC-GGGG-TCATAG--TATA--AATAA----T--CACAG--GTA-CCAAT-T---TT--GAT---ACACC--AAGTAA-TGCGGCA-TTTC--G--AC-------AA-AT-ATCG--TC--TC-----TT--CA-GT-GACG--CT-----CAAACC-TA--AA-----TG-TGGAAATC-CGAAACATGAAAT----ATTAAA--------TTATAAAAA----GTGA----AC--T--------AATG-----------TGAGTG----CAAAG-ACTGT--TG-A---AG-GCATCAGA--GCT--------TAT--------TGCCTGA-G-GA-GA-aattgtaa
gi|3 : tATTATAT---TATAA-A-TCAT------TATATGGT--ACGCAATTT--TGA-TGCACC-AGATG----GCG--TTATTTCGACC-A----AAT-TATA-TCGCTT---------T-CAGGTGA-TGCTTAA----A-CCGAAA-TGTTAGAA-ATCCAA-----A--A--C-GGAAAGTAA--A--AG-CT----TTATAAAA--AAGTGAACTCA-AT-GT-AGTACCAATAG-A-CTGGAGCC--CAGATCAC------------TT-CGTAGGATCAGAGCTA--G-CA-TCGTTATGCCTGAGG---GA----TT-A-TAACCCTT---A--A--TTTTGATATAAA--TTTATATTTTA-CCAC--TT--GTC--AATTAAA-A---TT-ACAT--ATC-CGTATTT--AAGCT----TAGAA-CAT--AGT-A-A-TGAGCAAAT-GGGCTG-TACGAT-T--CCGCTCGGGCAC-TAA--CAGTCCACCAGGCAG-AGGC-CTCGA-CCCGGGG-TCATAGT--ATA--AATAA----T---ACAG--GTA-CCAAT-T---TT--GAT---ACACTCAAGA--A-TG-CGCA-TTTC--G--AC-------AA-AT-AT-G--TC--T------CTGTCAAGTG-ACG--CT-----CAAACCGTGTGAAAATGGTGTTGGAAATC-CGAAACAGTGAA-----ATTTAAA--T----GTAT---AA----A-AA-----------------AGTG-----AAGTAATGTAGTG---CAAAG-ACTGT--TG-A---AG-GCATCAGA--GC---------TAT--------TGCCT--GG-GA-GA-
gi|5 : aatatTATA-ATATAA-AGTAATATTAC------GGT--AC--AATTT--TTACTGCACC--AATG----GCA--TT----CGAC--A----AGTTAATG-TC--TC---------TTCAG-TGA-TGCTCAA----AACCGAA--TATTGGA------AATCCG--------------------A--AA-CT----TTATAAAAT---G--A--TCA-AT-GTCAGTGCCA-AAAGA-TTGGGGCCAAAA-ACT-TCGAAGGA---------------TCAGAGCTATTG-CC-T----------GAGG---G---AGCTAA-T------CCT-A--ATTTTT-GATA--TGAATTTCTAATTCT-ACACTACTGCG-C--AATTTAA-A---T--ACATA---C-CTTA-TTTCAAGCT----AA--A-CAT--A---GCA-T-AGCAA-C-TGG
gi|2 : ctgaggagagataattccttaattttgatatgaatttctaatttcctaccactgcattaatacattatccgtatttcaagctaagtaacatcagtacatagcaacgggctgtagagacctggggactaacagtccaccagcagcggctctcgatcagggA-ATATAAGA-TAATAT-A----TGGG----AC-CAATTG----A-TGCACC---ATGC-G-GCA--TT-T--CGGGACA----AAT-TATG-TC--TC---------TTCAG-TGA-CTCTCAA----A-CCGAAATGGT--GGA-----AATCCGAA--ACAT-G--AAA--GT-A--AA-CT----TTATAAA----AGTGA---CA-ATAGT-AGT-GC--CAA-ACTTGTAGCCAA-ATACTTTGAAGCGAT---------------CAGAGCTA--T-GC--CT--------GAGG---GA-GA-TA-A-T------CTT-A--A--TTT-TGTA--TGAATTGCTAATTTA-TTAC-TAT--T-C--AATTAAATACTCTGTACAT--ATCGCGTATTT-CAAGCT-----AGTA-AAT--AGT-ACAAT-AGCAA-CTGGGCTG--TAGAGGA--CC-CTCGG-GAC-TAA--CAGTCCACCAG-CAG-AGGC-CTCGA-CC--CAG-T-ATAAT----A--TATGACGGGT--TAC-CCC-----CAAT-TC--TTGGA-T---GCACC--AGAT-G----CGCA-TTTT------C-------AA-TT-AT----TC--T------CT--CA--T-GATGGCTT-----CAA-----ACAAA-----T-TTGGAAATC-CGAAGC--TAAATATTTGTCGAAA-g
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacTATAA-A-TAATAT-AC------GGC--AC-CAATTT--CTA-TGCA-CCAGATG---TGCA--TT-T--CGtgctggataaa
gi|7 : gctatatAC-CATTTT--TGA-TTCACC-AGATGC---GCA--TT-T--CAAC--A----AAT-TATG-TA--TC---------T-----TCA-T-----------ATCGAAA-TGATGGAA------ATCCGAA--A--T----ATGTAATTACAAA-TT----TTGAAGAGCTAAA-------A-AT-GG-AGTGCCA-AAG-A-CTGGAGCCAA--------------A-GATGTTGAAGGA--TCAGAGCCA--T-GC-C-----------AGA---GA-AAGAT-AAT------C---ATAA--TTT----A--TT--TTTTTTATT---TCACCATT--G-C--AATTAA---------ATATCTATC-CGTATTTTCAAGCTAATATAGT--CGT--A-T-
gi|8 : ataataagatctctatacagtAATTTATTTA-TGCAAC-AAATGCGATACAATTTCC--CGACCCACCCAAAT-TATG-GA--TCGTAACCAGTT-CAG-TGAATGTTTCGTGCCAACCGAAA-TGTTGGA------AATCCGAAACA--T-G--AAATT-TAA--AA-CTATAATTA-AAAGTGAA--CC--CCATATGGT-AGTGCCA-AAG-A-CTGGAGCCAA-ATAcac
gi|9 : aaaataatatgttcaatcctatatCTCAA----A-CCGAAA-TGTTAGAA------ATCCGAA--ACTT-G--AA--TGTTG--AA-CT----TTATAAA----AGTGA--TCA-AT-GT-AGTGCCA-AAAGA-TTGGGGCCAA-ATACTACGAAG-GAT---------------CAGAGCTA--T-GCAT----------GAGG---GA-GA-TA-A-T------CCTTA--A--TTTTGATA--CGAATTTCTAATTTT-AC-C-ACT--G-T--AATTAA--A---T--ACAT--ATC-CGTATTT-CAAGCT-----AATAACAT--A-TTACA-T-AGCAA-CTGGGCTG--TAGAG-A--CC-CTCGGGGAC-TAA--CAGatgtatatatcaagctatgcctgagaataatcctaatttataattgagtaaatttcc
gi|10 : AGCTA--T-GC--CT--------GAGG---GA-GA-TA-A-T------C---CTTACTTTT-GATATAAA--TTTCCAATTTT---ACTACT--G-C--AATTCA--A---TG--CAT--ATC-CGTATTTT-AAGCC-----AGTAACAT--AGT-ACA-T-AGCAA-CTGGGCTG--TAGAG-A--CC-CTCGGGGAC-TAA--CAGTC
gi|5 : G--------GAGA---GATAATTC-C-T------T---A--A--TTTTGATA--TGAATTTCTAATTTC-CTACCACT--G-C--A-TTAA------T--ACATT-ATC-CGTATTT-CAAGCT----AAGTAACATCAG-T-ACA-T-AGCAA-C-GGGCTG--TAGAG-A--CC-T--GGGGAC-TAA--CAGTCCACCAG-CAG-CGGCTCTCGA-TC-AGGG-T-ATAATATAAAGTAAT-A----T--TAC-G--GT--ACAAT-TT--TT--ACT---GCACC--A-AT-G-----GCA--TTC--G--AC-------AAGTTAAT-G--TC--TC-----TT--CA-GT-GATG--CT-----CAAAAC---CGAA-----TATTGGAAATC-C-------------------GAAA-CT----TTATA--AA----ATGA--TCAA--T-----GTCAGTG-CCAAAAG--AT---TGGGGCCAAAA-ACTT---CG-A---AG-G-ATCAGA--GC---------TAT--------TGCCTGAGG-GA-GC-TA-ATCCT----AATTT-T-TG-AT--A--TG---AATTTCTA-A-----TTCTACACTAC-TGCG--CAA--TTTAAA---TA-C-------ATACC---T-TATTT--CA-AG-C-----TA-AACATA-aatacaaatataatacaaagtacttgagttat
gi|13 : ctgaTAATTTT-AC-C-ACT--G-C--AATTAA--A---T--AGAT--ATC-TGTATTGTCAAGCT-----AGTAGCAT--AGT-ACA-T-AACAA-CTGGGCTG--TAGAG-A--CC-CTCAGGGAC-TAA--CAGTCCACCAG-CAG-AGGC-CTCAACCC-AGGGATCATAATATAAT--AAgcatagcaactggg
gi|21 : ataatccttaattttgatcttaatgtcAGAG----CC-CTCGGGCAC-TAAAACAGTCCACCCG-CAGCAGGC-TTCGA-CC-
gi|19 : GAG-A--CC-CTCGGGCAC-TAA--CAGTCCACCAG-CAG-AGGC-TTCGA-CC-catacaat
gi|6 : tgagCATA---CAAA--AATCA----TA-TAC-G--GTA-CCAAT-T---TT--GAT---GCACC--ATAT-G----CGCA-TTTC--G--ACA------AA-TT-AT-G--TC--TC-----TT--CA-GT-GATG--CT-----GAATCC-catacaatatg
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttaacattgtaATAAT---AA--GATCT----C--TAT-ACAGT--ACCATTTT--TG--ATT----CACC--AGAT-G----CGCA-TTTC--A--AC-------AAATT-AT-G--TA--T------CT---------------T-----CATATC-GA--AA-----TGATGGAAATC-CGAAATATGTAAT-----TACAAA-TT----TTG----AA----GAGC--TAAAAAT-----G-GAGTGCC--AAAGA-CTGGAG----CCAAAG-ATGT---TG-A---AG-G-ATCAGA--GC---------CA---------TGCCAGAGA-AA-GA-TA-ATCAT----AATTT------ATTTT--T------TTTAT--------TTC---ACCAT-T--G--CAA--TTA-AA---TATC--------TATC-CGT-ATTTT--CA-AG-C-----gaaaaattgtaa
gi|4 : AT-TATA--GATCA----TACTAT-G--GTA-ACCAAAT---TT--GAT---GCACC--AGAG-G-----GTA-TTTC--G--AC-------AAATT-AT-AA-TCGCT------TT--CA-GTG-ATG--CT-----TAAACC-GA--AA-----TGTTAGAAATCGCAAAAC-TAGAAAG-----TAAAATCT----TTAT---AAAAAAGTGAACTCAA--T-----G-TAGTACC-AATAGA-CTGGAG----CCAGAT-ACTT---CG-T---AG-G-ATCAGA--GC---------TAGCATTCGTATGCCTGAGG-AT-TA-TA-C-CCTT---AATTT-T-G--AT--A--TA---AATTTATA-A-----TTTT--ACCAC-TTTGT-CAAATT---AAAATTA-C-----A--TATC-CGT---ATT--TA-AG-CTAGTTAG-AACATA--GTACATA----GCAAATGGGCTGT----AGC-GATTCCGCTCGGGCACCTAACAG----TCCACCA-GCAGG-GGCCTCGACCC--GGGGTCATA-GTATA---AATAA----T-CACAGG-T----AC-C--AATTTTGATAC-AC--C-AAGTAATG-CGGC-ATTTCGA--CAAAT--ATCG-TCTC--------T-T-C-A--G-TGA-CGCT-----C-AAAC-CT-----AAAT-GT---GGAAATC-CGAAAC-ATG-AAATATT--AAATT----A-T--A----AAA--AGTGA-------A--C--T--AATG-----------TGAGTGC---A-AAGAC-TGTTGAAGGCATCAGA----GCTT----ATTGCCTGA-GG-A-G-A--taatatagtcgtatcac
gi|3 : tattatAT-TATA--AATCA----T--TAT-ATGGTACGCAAT-T---TT--GAT---GCACC--AGAT-GGCGTT--A-TTTC--G--ACCA-----AA-TT-AT-A--TCGCT------TT--CA-GGTGATG--CT-----TAAACC-GA--AA-----TGTTAGAAATC-CAAAACG--GAA-A---GTAAAAG-CT----TTAT---AAAAAAGTGAACTCAA--T-----G-TAGTACC-AATAGA-CTGGAGC---CCAGATCACTT---CG-T---AG-G-ATCAGA--GCTAGCATCGTTA---------TGCCTGAGG-GATTA-TA-ACCCTT---AATTT-T-G--AT--A--TA---AATTTATATT-----TT----ACCACTT--GT-CAAT-T---AAAATTA-C-------ATATC-CGT---ATT--TA-AG-CTT---AG-AACATA------GTAATGAGCAAATGGGCTGTAC---GA-TT--CCGCTCGGGCACT-AACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATA-GTATA---AATAA------TACAGG-T----AC-C--AATTTTGATAC-ACT-C-AAG-AATG-CG-C-ATTTCGA--CAAA-T-AT-G-TCTC--------TGT-CAA--G-TGA-CGCT-----C-AAAC-CGTGTGAAAATGGTGTTGGAAATC-CGAAACAGTG-AA--ATTTAAATGT----A-TAAA----AAA--G-TGAAGT--A-A--TG-T--AGTG-CAAAGACTGTTGAAGGC
gi|20 : aatatattatAT-TATA--AATAA----TA-TAC-G--GCA-CCAATTT---CT--AT----GCACC--AGAT-G-T---GCA-TTTC--G--atcagagctattgcctgggaga
gi|8 : gctatATATAATTT--ATTTATGCAAC--AAAT-G-CGATACAATTTCCCG--ACCCACCCAAA-TT-AT-GGATCG-TAACCAGTT--CA-GTGAATG--TTTCGTGCCAACC-GA--AA-----TGTTGGAAATC-CGAAACATGAAAT-----TTAAAA-CTATAATTAA---AA----GTGA--ACCC--CATATGG-TAGTGCC--AAAGA-CT----GGAGCCAAAT-A--A---TGTA---TA-T-ATCA-A--GC---------TA---------TGCCTGAG-----AA-TA-ATCCT----AATTTAT-A--ATTGAG-TA---AATTT
gi|2 : aaaataatatgttcaatcctA--TT--GAT---GCACC--A--T-G-CG--GCA-TTTC--GGGAC-------AAATT-AT-G--TC--TC-----TT--CA-GTGACT---CT-----CAAACC-GA--AA-----TGGTGGAAATC-CGAAACAT-GAA-A---GT--AAA-CT----TTAT---AAAA--GTGA--CAAT--A-----G-TAGTGCC---AAAC-TTGTAG----CCAAAT-ACTT---TG-A---AGCG-ATCAGA--GC---------TA---------TGCCTGAGG-GA-GA-TA-ATCTT----AATTT-T-GT-A-TGAATTGCT-AATTT----A-----TT----ACTAT-T-----CAA--TTA-AA---TA-CTCTGTACATATCGCGTAT--TT--CA-AG-CT----AG-TAAATAGTA-CAATA----GCAACTGGGCTG----TAGAGGA--CC-CTC--GGGACTAACAG----TCCACCA-GCAG-AGGCCTCGACC-------CAGTATA-ATA---TATGACGGGT-TAC-C--------C-CCAATTCTTGG-AT-GCA-C-CA--GATG-CG-C-ATTTT----C-AATT-AT---TCTC----------T-C-ATGA-TG---GCT-----T-CAAA-CA-----AA----T-TTGGAAATC-CGAAGC--TA-AA-TATTTGcc
gi|9 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaatataagataatatatgggacca--CT-----CAAACC-GA--AA-----TGTTAGAAATC-CGAAAC-TTGAATG----TTGAA--CT----TTAT---AAAA--GTGA--TCAA--T-----G-TAGTGCC-AAAAG--ATTGGGG---CCAAAT-ACTA---CG-A---AG-G-ATCAGA--GC---------TA---------TGCATGAGG-GA-GA-TA-ATCCTT---AATTT-T-G--AT--A--CG---AATTTCTA-ATT---TT----ACCAC-T--G--TAA--TTA-AA---TA-C-------ATATC-CGTAT--TT--CA-AG-CTA---AT-AACATA-T-TACATA----GCAACTGGGCTG----TAGA-GA--CC-CTCGGGGACT-AACAGtcgaaatgctggataaa
gi|22 : GGAGCCAAAT-ACTT---CG-T---AG-G-ATCAGA--GCTACATG---TA---------TGCCTGAGG-GA-TA-T
gi|12 : GTCAAAT-ACTTTTTCG-AGCCAG-G-ATCAGACTGC---------TA---------TGCCTGAGG-GA-GATTA-ATCCTTT--AATTG-T-GTGAT--A--TA---AATTTCCA-ATTTTTTT----A-CAC-T--GCTCAA--TTC-AA---TA-C-----A-
gi|11 : cctataataaaccaattgtgaacaattgtagtgccatagacttggcataaccgcgtaGTCAAAT-ACTTTTTCG-AGCCAG-G-ATCAGACTGC---------TA---------TGCCTGAGG-GA-GATTA-ATCCTTT--AATTG-T-GTGAT--A--TA---AATTTCCA-ATTTTTTT----A-CAC-T--GCTCAA--TTC-AA---TA-C-----A-t
gi|10 : cctataataaaccaattgtgaacaattgtagtgccatagacttggcataaccgcgtaA--GC---------TA---------TGCCTGAGG-GA-GA-TA-ATCCTT---ACTTT-T-G--AT--A--TA---AATTTCCA-ATT---TT----ACTAC-T--G--CAA--TTC-AA---TG-C-------ATATC-CGT---ATT--TTAAGCC-----AGTAACATA--GTACATA----GCAACTGGGCTG----TAGA-GA--CC-CTCGGGGACT-AACAGt
gi|5 : CTGAGGAGA-GA-TAATTCCTT---AATTT-T-G--AT--A--TG---AATTTCTA-A-----TTTCCTACCAC-T--G--CAT--T---AA---TA-C-----A-TTATC-CGTAT--TT--CA-AG-CTA---AGTAACATC-AGTACATA----GCAAC-GGGCTG----TAGA-GA--CC-T---GGGGACTAACAG----TCCACCA-GCAGCGGCTCTCGATC---AGGGT-ATA-ATATAAAGTAATA----T-TAC-GG-T----AC-A--ATTTTT-A-CT-GCA-C-CA---ATG--G-C-ATT-CGA--CAAGTTAAT-G-TCTC--------T-T-C-A--G-TGA-TGCT-----C-AAAA-CC-----GAAT-A--TTGGAAATC-CGAAAC-TTT-A-------------------T--A----AAA----TGA---TCA-ATGT--C--AGTGCCAAAAG--ATTG-GGGCCAAA-A--AC-TTC-GAAGG-ATCAGA---GCTAT-----T-GCCTGAGGG-A-G-C--TAAT----C-CTAATTTTTGATATGAAT-T-TCTAATTCTACACTAC--TGCGC--AATTTAAA--TA-C-------ATAC--C-TTA-TT-TCAAGC------TA--AACA-TA--GC-ATA-GCAA-CTGGGtcaatacaaatataatacaaagtacttgagttat
gi|13 : A-TA-ATCCTT---AATTT-TGAT-CTTAA--TGTCTAATTT-----------T----ACCAC-T--G--CAA--TTA-AA---TA-------G-ATATC-TGT---ATTGTCA-AG-CT----AGTAGCATA--GTACATAA----CAACTGGGCTGT----AGA-GA--CC-CTCAGGGACT-AACAG----TCCACCA-GCAG-AGGCCTCAACCC--AGGG
gi|19 : GA-GA--CC-CTCGGGCACT-AACAG----TCCACCA-GCAG-AGGCTTCGACCCatcataatataataa
gi|4 : tgag-ATA---GATCA----T--AC-TA-TGGTAAC-C--AAATTTGA--T-GCACCAGAG-G-----G-T-ATTTCGA--CAAATT-AT-AATCGC--------T-TTC-A--G-TGA-TGCT-----T-AAAC-CG-----AAAT-GT-T-AGAAATCGCAAAAC-TAG-AA-AGTA-AAATCT----T-T--ATAAAAAA--GT-GAACT-CA-A--TG-T--AGTACCAATAG--ACTG-GAGCCAGA---TAC-TTC-GTAGGA-TCAGAGCTAGCATTCGTAT-GCCTGA-GG-A-TTA--TACC----C-TTAA-TTTTGATATAAAT-T-TATAA--TTTTACCACTTT--GTCAAA-TTAAAATTA-C-------ATATC-C-GTA-TT-T-AAGCTAGT--TA-GAACA-TAGTAC-ATA-GCAA-ATGGGCTGTAGCGATTCCGCTCGGGCACCTAACAGatacaatatg
gi|3 : tattatatt-ATA---AATCA----T-TATATGGT----ACGC--AATTTTGA--T-GCA-C-CAG--ATGGCG-TTATTTCGAC-CAAATT-AT-A-TCGC--------T-TTC-A--GGTGA-TGCT-----T-AAAC-CG-----AAAT-GT-T-AGAAATC-CAAAAC-G-G-AA-AGTAAAAGCTT----TAT--A----AAAAAGT-GAACT-CA-A--TG-T--AGTACCAATAG--ACTG-GAGCCCAG-ATCAC-TTC-GTAGGA-TCAGAGCTAGCATCGTTAT-GCCTGA-GG---G-A--TTATAACCC-TTAA-TTTTGATATAAAT-T-T---ATATTTTACCACT-T--GTC-AA-TTAAAATTA-C-------ATATC-C-GTA-TT-T-AAGC---T--TA-GAACA-TAGTA--ATGAGCAA-ATGGGCTGTAC-GATTCCGCTCGGGCAC-TAACAGtccaccagcaggggcctcgacccggggtcatagtataaataatcacaggtaccaattttgatacaccaagtaatgcggcatttcgacaaatatcgtctcttcagtgacgctcaaacctaaatgtggaaatccgaaacatgaaatattaaattataaaaagtgaactaatgtgagtgcaaagactgttgaaggcatcagagcttattgcctgaggaga
gi|6 : aatatattatattATCA----TATAC-GG-T----AC-C--AATTTTGA--T-GCA-C-CAT--ATG-CG-C-ATTTCGA--CAAATT-AT-G-TCTC--------T-T-C-A--G-TGA-TGCT-----tccaccaggcagaggcctcgacccggggtcatagtataaataatacaggtaccaattttgatacactcaagaatgcgcatttcgacaaatatgtctctgtcaagtgacgctcaaaccgtgtgaaaatggtgttggaaatccgaaacagtgaaatttaaatgtataaaaaagtgaagtaatgtagtgcaaagactgttgaaggcatcagagctattgcctgggaga
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttaacattgtacatacaaaa-TAC-AG-T----AC-C--ATTTTTGA-TTCAC--C-A---GATG-CG-C-ATTTCAA--CAAATT-AT-G-TATC--------T-T-C-A----TA--T---------------CG-----AAAT-GA-T-GGAAATC-CGAAAT-ATGTAA-T-TACAAATTT----T-G--A----AGA--GCTAA-----A-A--A--TGGAGTGCCAAAGA--CTGGAG--CCAAA-GATGT-T---GAAGGA-TCAGA----GC-C----AT-GCCAGA-GA-AAG-A--TAAT----C-ATAA-TTT--AT-----T-T-T-TTTTATTTCACCAT--T--GC--AA-TTAAA--TATC---T---AT-C--C-GTATTT-TCAAGC---TAATA-TAGTCGTATCAC-gaatccgaaaaattgtaa
gi|2 : ataataagatctctaATG-CGGC-ATTTCGGGACAAATT-AT-G-TCTC--------T-T-C-A--G-TG---ACT-----CTCAAACCG-----AAAT-G--GTGGAAATC-CGAAAC-ATG-AA-AG--TAAACTT----TAT--A----AAA--G-TGA----CA-A--TAGT--AGTGCC--AAA--CTTG-TAGCC--A-AATAC-TTT-GAAGCGATCAG----AGC-T----AT-GCCTGAGGG-A-G-A--TAAT----C-TTAA-TTTTG-TATGAAT-TGC-TAATTTATTACTAT--T---C--AA-TTAAA--TA-CTCTGTACATATCGC-GTA-TT-TCAAGC---T--AG-TA--AATAGTACAATA-GCAA-CTGGGCTGTAGAG-GACCC-TCGGGAC--TAACAG
gi|8 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaatataagataatatatgggaccaattgatgcaccCAAATT-AT-G-GATCGTAACCAGT-T-C-A--G-TGAATGTTTCGTGC-CAAC-CG-----AAAT-GT-T-GGAAATC-CGAAAC-ATG-AA--ATTTAAAACTATAAT-T--A----AAA--G-TGAACCCCATA--TGGT--AGTGCCAAAGA--CTGGA--GCCAAATAATGTATAT-------ATC--A---AGC-T----AT-GCCTGA-G----A-A--TAAT----C-CTAA-TTTtccaccagcagaggcctcgacccagtataatatatgacgggttacccccaattcttggatgcaccagatgcgcattttcaattattctctcatgatggcttcaaacaaatttggaaatccgaagctaaatatttgtcgaaatgctggataaa
gi|9 : aaaataatatgttcaatcctatataatttatttatgcaacaaatgcgatacaatttcccgacccaccCT-----C-AAAC-CG-----AAAT-GT-T-AGAAATC-CGAAAC-TTG-AA-TG-TTGAACTT----TAT--A----AAA--G-TGA---TCA-A--TG-T--AGTGCCAAAAG--ATTG-GGGCC--A-AATAC-TAC-GAAGG-ATCAG----AGC-T----AT-GCATGAGGG-A-G-A--TAATC---C-TTAA-TTTTGATACGAAT-T-TCTAA--TTTTACCAC--T--GT--AA-TTAAA--TA-C-------ATATC-C-GTA-TT-TCAAGC---T--AA-TAACA-TATTAC-ATA-GCAA-CTGGGCTG--TAGAGACCC-TCGGGGAC-TAACAGataattgagtaaatttcc
gi|10 : ---AGC-T----AT-GCCTGA-GGGA-G-A--TAAT----CCTTAC-TTTTGATATAAAT-T-T-CCA-ATTTTACTAC--T--GC--AA-TTCAA--TG-C-------ATAT--CCGTA-TT-TTAAGC---C--AG-TAACA-TAGTAC-ATA-GC-AACTGGGCTG--TAGAGACCC-TCGGGGAC-TAACAGTCAATACAAATATAATACAAAGTACTTG-AGTTAT
gi|5 : TGA-GG-A-G-AGATAATTC--C-TTAA-TTTTGATATGAAT-T-TCTAATTTCCTACCAC--T--GC---A-TT-AA--TA-C---A---TTATC-C-GTA-TT-TCAAGC---T--AAGTAACATCAGTAC-ATA-GC-A-ACGGGCTG--TAGAGACC---TGGGGAC-TAACAG
gi|13 : c-A--TAAT----CCTTAA-TTTTGATCTTAATGT-C-TAAT--TTTACCAC--T--GC--AA-TTAAA--TA-----G---ATAT--CTGTA-TTGTCAAGC---T--AG-TAGCA-TAGTAC-ATA-ACAA-CTGGGCTG--TAGAGACCC-TCAGGGAC-TAACAGtccaccagcagcggctctcgatcagggtataatataaagtaatattacggtacaatttttactgcaccaatggcattcgacaagttaatgtctcttcagtgatgctcaaaaccgaatattggaaatccgaaactttataaaatgatcaatgtcagtgccaaaagattggggccaaaaacttcgaaggatcagagctattgcctgagggagctaatcctaatttttgatatgaatttctaattctacactactgcgcaatttaaatacataccttatttcaagctaaacatagcatagcaactggg
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|15 ): CCCAGGTGTCTGCGTGTTTGTCGAACTCTTCTTTTTTATAAACTTTTGATTGATCACTGTTTGTTATCATCGCATTTTGATTAATATAAATCATATAACGGTACCAATTTT
Unaligned ( gi|16 ): CAGGTGTCTGTGTTTGTCGAACTCTTCTTTTTTATAAACTTTTGATTGATCACTGTTTGTTATCATCGCATTTTGATTAATATAAATCATATACGGTACCAATTTT
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|18 ): AAACAGAAACGTAAAGTTGTAAAGCTGACAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAAATATGT
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 22222222222222222222
lowQualScore : 666666 11 1 11 1 222 2 2 22 22 55555 222 2222 1 77777777777777777 22 2 22222222222222222222 1 2 2 55555555555555555 2 1 3333 4 1 333 2 222 4 22 11 1 1 1 1111 11 11111 11 1111 3333 3333333333 22222222 1 1 11111 222222222222 11 2222 1 55555555555555 1111 11111 11 111111 333333333 1 111 44444444444 33333 11 22222222 2222 1111 1111 33333 1111 1 22 1111 11 11 111 11 111 1111 11 11111111 22222 111 11 11 111 444444 1 33 999999999999999 1 1 1 1 11 222 1 1 1 11 1 222 2
lowQualScore : 2 8 1 8 000000 11 6 3 88 3 555 0 0 2 44 44 2 00000 222 1111 2 5 44444444444444444 77 55 3 0 6 77777777777777777777 5 0 0 1 33333333333333333 2 1 0 5 7777 0 5 111 0 666 0 77 3 3 2 33 0 0 6 5 8 1 3333 8 99 22222 66 6 6 5555 1 6 9 8888 6 6 99 99 2222222222 6 6 44444444 3 2 44444 5 77 5 1 222222222222 3 77 22 3333 4 7 4 4 7 4 3 77777777777777 4 5555 66666 4 11 111111 666666666 3 7 8 777 8 2 4 222 0 00000000000 2 11111 66 4 2 22 44444444 5 2222 77 5 5 8888 5 5 5 2222 00000 1111 3 6 6 99 4444 0 8 8 99 0 22 3 3 3 8 444 1 11 8 77 111 1 7777 8 3 11 0 11 8 88 8 44444444 0 00000 88 444 66 44 2 777 2 111111 2 0 00 33 666666666666666 2 5 5 8 8 8 0 999 3 5 11 888 3 6 3 1 7 3 7 7 88 2 5 66 4 222 66 0 2
lowQualScore : . . . . ...... .. . . .. . ... . . . .. .. . ..... ... .... . . ................. .. .. . . . .................... . . . . ................. . . . . .... . . ... . ... . .. . . . .. . . . . . . .... . .. ..... .. . . .... . . . .... . . .. .. .......... . . ........ . . ..... . .. . . ............ . .. .. .... . . . . . . . .............. . .... ..... . .. ...... ......... . . . ... . . . ... . ........... . ..... .. . . .. ........ . .... .. . . .... . . . .... ..... .... . . . .. .... . . . .. . .. . . . . ... . .. . .. ... . .... . . .. . .. . .. . ........ . ..... .. ... .. .. . ... . ...... . . .. .. ............... . . . . . . . ... . . .. ... . . . . . . . . .. . . .. . ... .. . .
lowQualScore : 5 0 0 0 222222 00 7 3 33 3 000 0 0 5 00 00 5 00000 000 0000 5 5 00000000000000000 55 00 0 0 0 00000000000000000000 0 0 0 0 55555555555555555 5 0 0 5 0000 0 5 000 0 000 0 55 2 2 5 88 0 0 0 0 0 0 0000 8 00 00000 88 7 7 0000 0 7 3 7777 7 7 22 22 8888888888 7 7 22222222 3 0 33333 7 99 7 7 333333333333 9 99 22 9999 4 8 4 4 3 4 9 99999999999999 0 1111 88888 0 00 555555 000000000 6 3 0 000 0 0 0 555 5 99999999999 9 22222 11 4 6 22 11111111 7 3333 99 7 7 4444 7 7 7 1111 77777 2222 3 7 7 33 2222 8 0 0 00 8 44 8 2 8 0 000 4 00 0 44 888 0 4444 0 2 00 8 66 0 88 0 22222222 6 00000 88 444 88 22 0 222 5 555555 5 0 22 22 888888888888888 0 2 5 0 0 0 8 222 3 3 00 333 3 7 3 0 3 3 3 3 55 5 0 55 0 000 55 0 5
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACNGTTGNGATATATAATCGGTAATGAAGCTGTTAAANTTTGTAAAGCTGGTTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATAT-CGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAAC-GGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAAT-TATA--A-ATCATA-TAC--G--GTAN-C-AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC-------AAATTA-TG-TCTC--------TT-CAGTGGATGCT-----CAAA-CCGA--AATGTTGGAAATC-CGAAACATGGAATG-TTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAG-ACTGG-G---------G-GGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA-----TTT---ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTT-A-T--TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG---TTAGAG-A--CC-CTC-GGGGACTTAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCA--CCAGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TC-AGTGACG--CTCAAACCG-----AAAT-GT-TTGGAAATCCGAAAC-GTGAAANTTTAAATTTTN--AAAAGTNAA----C-AATGT-AGTGCC-AAAGACTG-GGGCCAAAGATG--TTGAAGGCATCAGAAGC-TA-T-GCCTGAG-G-AGATAATC-TTAATTT-GATATNAATTTTAA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
Reference ( family-141 ) : AACATTATATA-ATATAAATNATAT-ACT----GGGT--ACCAATTTTGATGCACC-AGATGC--GCATT-TCGACC-AAAT-TATGTCTC-TCAGTGATGCTCAAA-CCGAAA-TGTTGGAA-----AATCCGAAATGAAAT-GT-AAACTTTATAAA----A--AAGTGATC--AATGT--AGTGCCAAAGACTGGAGCCAA-ATACT--CGAG-GA---------G-AGTCAGAGCTATGCTCGGAGG-GAGA-TNATC---TAATTTTGATATACGAATTTCTAATTTTNCAC-ACTGCAATTAAAAT-ACAT-ATCCGTATTTTCAAGCT-A-GTA-CAT-AGTACATAGCAACTGGGCTG--TAGAGACCCTCGGGGACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCGGGGTCATAAT-TANA--A-ATNAT--TAC--G--GTAN-C-AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC-------AA-TTA-TG-TCTC--------TT-CAGTGGATGCT-----CAAA-CCGA--AATGTTGGAAATC-CGAAACATNGAATG-TTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAG-ACTGG-A---------GGGGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA-----TT----ACCACT--G--C--AA-TTNAA--TAC-----A-ATATC-CGTT-A-T--TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG---TTAGAG-A--CC-CTC-GGGGACTTAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAGTATANATNATTACAGG-TA---CCAATTTT--G-ACGCA--CNAGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TC-AGTGATG--CTCAAACCG-----AAAT-GT-TTGGAAATCCGAAAC-NTGAANGTTTAAACTTTT--AAAAGTGAA----C-AATGT-AGTGCCAAAAGNTTGAGGGCCAAAAATACTTCGAAGGAATCAGAAGC-TA-T-GCCTGAG-G-AGATAATC-TTAATTTTGATATGAATTTTAAT-TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCAAGCTNATAACA-TAGTACATAGCAACTGGGCTGTATAGAGACCCTCGGGGACTAACAGTCAATACAAATATAATACAAAGTACTTG-AGTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTC-TCAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAA----GTTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA----CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT-A-TACATAGCAAC-GGGCTGATCAGAGACCCTCGGAGACTAA--CAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAAT-TAAA--A-ATCAT--TAC--GCTGTGA-C-AATATAT--TAT-TGCACCAGATGTGTCGC-A-TTTC--G--AC-------AA-TTA-TG-TCT---------TT-CAGTGGATGCT-----CAAA-CCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGG-G---------GGGGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----TT----ACCACT--G--C--AA-T--AA--TAC-----A-ATATC-CGTTCA-T--TCACAGC--AG----AACATATATCCA-T-AAGGCGCTTCTGGGCTGTGTTTAGAG-A--CC-CTCGGGGGAC--AACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC---CGAGG--ATGCG-CATTGCGAAGCAAATTAT-GTCTCT-TC-AGTG-TG--CTCCAAACG-----AAAT-GT-TTAGAAATCCGAAAC-TTGAATGTTTGAACTTTT--AAAAGTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGCATA-T-GCATGAG-G-AGATAATC-TTAATTTGGATACGAATTTTAATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGA-TAACAGAAATTATGAA-A-AATTAAAAGTGCTCGTATTTAT
gi|10 : AGC-TA-T-GCCTGAG-GGAGATAATCCTTACTTTTGATATAAATTTCCAA-TTTTACTACTGCAATTCAATGC-ATATCCGTA-TTTTAAGCCAGTAACA-TAGTACATAGCAACTGGGCTG--TAGAGACCCTCGGGGACTAACAGTCAATACAAATATAATACAAAGTACTTG-AGTTAT
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-G-ACTTG-GCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTTT----A-CACT--GCTC--AA-TTCAA--TAC-----A-
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-G-ACTTG-GCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTTT----A-CACT--GCTC--AA-TTCAA--TAC-----A-t
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA-----TTTT--ACCACT--G--C--AA-TTAAA--TA------G-ATATC-TG-T-A-TTGTCA-AGCT-AGT---AGCATA-GTACA-T-A----ACAACTGGGCTG----TAGAG-A--CC-CTC-AGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATATA-ATAAt
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatGAAAC-GT-AAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATA
gi|19 : aaacaGAGACCCTCGGGCACTAA--CAGTCCACCAGCAG-AGGC-TTCGACCtgt
gi|2 : tgag-TATA--AGATAATA-TAT--G--GGAC-C-AAT-T-----GA-TGCACCA--TGCG--GC-A-TTTC--GGGAC-------AAATTA-TG-TCTC--------TT-CAGTGACT-CT-----CAAA-CCGA--AATGGTGGAAATC-CGAAACATGAAA-G-T--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAAA----CTTGTA---------G---CCAAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATC--TT---AATT-T-TG--T---ATGAATTGCTAA-----TTT---ATTACT--ATTC--AA-TTAAA--TACTCTGTACATATCGCGTA-T-T--TCA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG---T-AGAGGA--CC-CTC-GGG-ACT-AACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCA--CCA-G--ATGCG-CATTTT----C-AATTAT--TCTC--TC-A-TGATGGCTTCAAAC-------AAA---T-TTGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : ---------GGAGCCAAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : AT-TATA--A-ATCAT--TATATG--GTACGC-AAT-T-T--TGA-TGCACCAGATG-G-CGTTA-TTTC--G--ACCA-----AA-TTA-TA-TCGC--------TTTCAGGTGATGCT-----TAAA-CCGA--AATGTTAGAAATC-CAAAAC--GGAAAG-TAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAG-ACTGG-A---------GC--CCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATAT-----TTT---ACCACTT-GT-C--AA-TTAAAATTAC-----A--TATC-CGT--A-T--TTA-AGCTTAG----AACATA-GTA-A-TGA----GCAAATGGGCTG---TACGAT-T--CCGCTC-GGGCACT-AACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAA-TACAGG-TA---CCAATTTT--G-ATACACTCAAGA--ATGCG-CATTTCGA--CAAA-TAT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC--AAAGACTG---------------TTGAAGGCATCAG-AGC-TATT-GCCTG-G-G-AGA
gi|4 : aatatattatAT-TATA--G-ATCATACTAT--G--GTAA-CCAAA-T-T--TGA-TGCACCAGAGG----GT-A-TTTC--G--AC-------AAATTA-TAATCGC--------TTTCAGTG-ATGCT-----TAAA-CCGA--AATGTTAGAAATCGCAAAAC-TAGAAAG-TAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAG-ACTGG-A---------G---CCAGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA-----TTTT--ACCACTTTG--TCAAA-TTAAAATTAC-----A--TATC-CGT--A-T--TTA-AGCT-AGTTAGAACATA-GTACA-T-A----GCAAATGGGCTG---T-AGCG-ATTCCGCTC-GGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACA--CCAAGTAATGCGGCATTTCGA--CAAAT-ATCGTCTCT-TC-AGTGACG--CTCAAACCT-----AAAT-GT---GGAAATCCGAAAC-ATGAAATATTAAATTATA--AAAAGTGAA----CTAATGTGAGTGC--AAAGACTG---------------TTGAAGGCATCAGAGCT-TA-TTGCCTGAG-G-AGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT--GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAAC-GGGCTG--TAGAGACCT--GGGGACTAA--CAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAATATAAAGTA-AT-AT--TAC--G--GTA--C-AAT-T-T--TTACTGCACCA-ATG----GC-A-TT-C--G--AC-------AAGTTAATG-TCTC--------TT-CAGTG-ATGCT-----CAAAACCGA--A-TATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAG-ATT-------------GGGGCCAAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA-----TTCTACACTACTGCG--C--AATTTAAA--TAC-------ATACC---TT-ATT--TCA-AGCT-A-----AACATA-G--CA-T-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA-C-AAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA-AATTGTAA-----
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCA--CCAG---ATGCG-CATTTCAA--CAAATTAT-GTATCT-TC-A---------T---ATCG-----AAAT-GA-T-GGAAATCCGAAAT-ATGTAATTACAAATTTTG--AAGAGCTAA----A-AATGG-AGTGCC-AAAGACTG-GAGCCAAAGATG--TTGAAGG-ATCAG-AGC-CA-T-GCCAGAGAA-AGATAATC-ATAATTT--ATTTT--TTTTA---TTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAAT---A-TAGT-CGTATCA
gi|8 : ataataagatctcta-AAT-T-TATTTA-TGCAACAAATGCGATAC-AATTTCCCG--ACCCACCCAAA-TTA-TG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGCCAA-CCGA--AATGTTGGAAATC-CGAAACATGAAAT--TTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAG-ACTGG-A------------GCCAAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcaatcctatatCT-----CAAA-CCGA--AATGTTAGAAATC-CGAAAC-TTGAATG-TTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAG-ATTGG-------------GGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAATT---TT----ACCACT--G--T--AA-TTAAA--TAC-------ATATC-CGTA-T-T--TCA-AGCT-AAT---AACATA-TTACA-T-A----GCAACTGGGCTG----TAGAG-A--CC-CTC-GGGGAC-TAACAG----c
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 222222 11 1 11 1 11 1 1 11 1 5555555 11 11 1 1 1 2222 1 3333 1 1 2222 1 222 1 11 11 11 1 1 1 111 1111 1111 3333 222222 22222222 1 1111111 222222222222 11 2222 1 55555555555555555 1111 11111 11 111111 333333333 1 111 2222 33333 11 22222222 2222 1111 1111 33333 1 22 1111 11 11 111 11 1111111 11 1 222222222 22222 11111 11 11 1 1 444444 1 1 1 6666666666666 11 1 1 11 22 1 22222 1 1 1 11 1 222 1
lowQualScore : 1 8 8 333333 11 3 88 3 77 5 5 1 66 1 1 6 1 5 0000000 88 77 22 1 5 5 5 1 3333 5 6666 1 5 5 4444 1 5 222 5 88 88 3 2 1 33 0 0 5 3 6 6 999 0 99 7777 6 5555 1 6 9 8888 6 6 99 99 555555 6 6 44444444 3 66 4444444 77 5 1 222222222222 3 77 22 3333 4 7 4 4 66 22222222222222222 4 5555 66666 4 11 111111 666666666 3 7 8 777 8 2 4 222 0 3333 99999 2 11111 66 4 22 44444444 5 2222 77 5 5 8888 5 5 5 2222 00000 6 99 3 77 99 4444 0 8 8 99 0 11 0 8 3 8 444 1 11 8 1 0 9999999 8 3 11 0 0 8 88 111111111 0 00000 0 88888 99 00 0 1 0 1 111111 2 0 5 0 7777777777777 33 8 5 8 6 0 999 4 88 00 4 22222 3 6 3 0 7 3 7 0 7 88 1 5 22 1 222 22 5 1
lowQualScore : . . . ...... .. . .. . .. . . . .. . . . . . ....... .. .. .. . . . . . .... . .... . . . .... . . ... . .. .. . . . .. . . . . . . ... . .. .... . .... . . . .... . . .. .. ...... . . ........ . .. ....... .. . . ............ . .. .. .... . . . . .. ................. . .... ..... . .. ...... ......... . . . ... . . . ... . .... ..... . ..... .. . .. ........ . .... .. . . .... . . . .... ..... . .. . .. .. .... . . . .. . .. . . . . ... . .. . . . ....... . . .. . . . .. ......... . ..... . ..... .. .. . . . . ...... . . . . ............. .. . . . . . ... . .. .. . ..... . . . . . . . . . .. . . .. . ... .. . .
lowQualScore : 0 0 0 000000 00 3 33 3 55 0 5 0 55 0 0 0 0 5 5555555 00 55 00 0 0 5 0 0 5555 5 5555 0 0 5 0000 0 5 000 5 00 55 2 5 0 88 0 0 0 2 7 7 222 7 22 3333 7 0000 0 7 3 7777 7 7 22 22 888888 7 7 22222222 3 22 6666666 99 7 7 333333333333 9 99 22 9999 4 8 4 4 88 99999999999999999 0 1111 88888 0 00 555555 000000000 6 3 0 000 0 0 0 555 5 3333 33333 9 22222 11 4 22 11111111 7 3333 99 7 7 4444 7 7 7 1111 77777 7 22 3 77 33 2222 8 0 0 00 8 66 6 6 8 0 000 4 00 0 4 8 4444444 0 2 00 8 6 0 88 888888888 6 00000 8 66666 44 22 0 0 0 0 555555 5 0 0 0 0000000000000 88 8 5 0 0 8 222 7 33 00 0 33333 3 7 3 7 3 3 3 7 3 55 0 0 00 0 000 00 5 0
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GTA--C-AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA----TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTT-A-T--TCA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTC-GGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGC-TATTGCCTGAG-G-AGATAATCNTAA--TTT-GATATGAATTTT-AA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
Reference ( family-141 ) : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACNGTTGNGATATATAATCGGTAATGAAGCTGTTAAANTTTGTAAAGCTGGTTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GTAN-C-AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-GGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA----TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTT-A-T--TCA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTC-GGGGACTTAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TNAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGC-TA-TGCCTGAG-G-AGATAATCTTAA--TTT-GATATNAATTTT-AA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTCT-CAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAAG----TTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA---CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT--ATACATAGCAACGGGCTGATCAGAGACCCTCGGAGACTAA--CAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAATTAAAA-A-TCAT---TACGCTGTGA-C-AATATAT--TAT-TGCACCAGATGTGTCGC-A-TTTC--G--AC-------AATT-ATG-TCT---------TT-CAGTGGATGCT-----C-AAACCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGGGG---------G-GGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----T---T-ACCACT--G--C--AA-T--AA--TAC-----A-ATATC-CGTTCA-T--TCACAGC--AG----AACATATATCC-AT-AAGGCGCTTCTGGGCTGTGTTTAGA-GA--CC-CTCGGGGGAC--AACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC-CG--AGG--ATGCG-CATTGCGAAGCAAATTAT-GTCTCT-TCA-GTG-TG--CTCCAAACG-----AAATG-T-TTAGAAATCCGAAAC-TTGAATGTTTGAACTT-TTAAAA-GTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGCATA-TGCATGAG-G-AGATAATCTTAA--TTTGGATACGAATTTT-AATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGA-TAACAGAAATTATGAA-A-AATTAAAAGTGCTCGTATTTAT
gi|10 : AGC-TA-TGCCTGAG-GGAGATAATCCTTACTTTT-GATATAAATTTCCAA--TTTTACTACTGCAATTCAATGC-ATATCCGTA-TTTTAAGCCAGTAACA-TAGTACATAGCAACTGGGCTG--TAGAGACCCTCGGGGACTAACAGTCAATACAAATATAATACAAAGTACTTG-AGTTAT
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-t
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA----TT---TTACCACT--G--C--AA-TTAAA--TA------G-ATATC-TG-T-A-TTGTCA-AGCT-AGT---AGCATA-GTAC-AT-A----ACAACTGGGCTG----TAGA-GA--CC-CTC-AGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATAT-AATAAt
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTAAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATAT
gi|19 : aaacagaaacgGAGACCCTCGGGCACTAA--CAGTCCACCAGCAG-AGGC-TTCGACCgt
gi|2 : tgagTATAAGA-TAAT-A-TATG--GGAC-C-AAT-T-----GA-TGCACCA--TGCG--GC-A-TTTC--GGGAC------AAATT-ATG-TCTC--------TT-CAGTGACT-CT-----C-AAACCGA--AATGGTGGAAATC-CGAAACATGAAA--GT--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAA---ACT---TG---------T-AGCCAAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAAT-C-TT---AATT-T-TG--T---ATGAATTGCTAA----TT---T-ATTACT--ATTC--AA-TTAAA--TACTCTGTACATATCGCGTA-T-T--TCA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG----TAGAGGA--CC-CTC--GGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCACC--A-G--ATGCG-CATTTT----C-AATTAT--TCTC--TCA--TGATGGCTTCAAAC-------AAA---T-TTGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : G---------G-AGCCAAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : ATTATAA-A-TCATTA-TATG--GTACGC-AAT-T-T--TGA-TGCACCAGATG-G-CGTTA-TTTC--G--ACC-----AAATT-ATA-TCGC--------TTTCAGGTGATGCT-----T-AAACCGA--AATGTTAGAAATC-CAAAAC--GGAAA-GTAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GGA---------G-C-CCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATAT----TT---T-ACCACTT-GT-C--AA-TTAAAATTAC-----A--TATC-CGT--A-T--TTA-AGCTTAG----AACATA-GTA--ATGA----GCAAATGGGCTG---TACGA-TT--CCGCTC-GGGCACT-AACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAAT-ACAGG-TA---CCAATTTT--G-ATACACTCAAGA--ATGCG-CATTTCGA--CAAAT-AT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC-AAAGA-CTG-------------TT--GAAGGCATCAG-AGC-TATTGCCTG-G-G-AGA
gi|4 : aatatattatATTATAG-A-TCAT-ACTATG--GTAA-CCAAA-T-T--TGA-TGCACCAGAGG----GT-A-TTTC--G--AC------AAATT-ATAATCGC--------TTTCAGTG-ATGCT-----T-AAACCGA--AATGTTAGAAATCGCAAAAC-TAGAAA-GTAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GGA---------G---CCAGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA----TT---TTACCACTTTG--TCAAA-TTAAAATTAC-----A--TATC-CGT--A-T--TTA-AGCT-AGTTAGAACATA-GTAC-AT-A----GCAAATGGGCTG---T-AGC-GATTCCGCTC-GGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACACC--AAGTAATGCGGCATTTCGA--CAAAT-ATCGTCTCT-TCA-GTGACG--CTCAAACCT-----AAATG-T---GGAAATCCGAAAC-ATGAAATATTAAATTA-TAAAAA-GTGAA----CTAATGTGAGTGC-AAAGA-CTG-------------TT--GAAGGCATCAGAGCT-TATTGCCTGAG-G-AGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT-GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAACGGGCTG--TAGAGACC--TGGGGACTAA--CAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAA-TATAA-AGTAAT-ATTACG--GTA--C-AAT-T-T--TTACTGCACCA-ATG----GC-A--TTC--G--AC------AAGTTAATG-TCTC--------TT-CAGT-GATGCT-----CAAAACCG---AATATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAGATT----G---------G-GGCCAAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA----TTCTAC-ACTACTGCG--C--AATTTAAA--TAC-------ATACC---TT-ATT--TCA-AGCT-A-----AACATA-G--C-AT-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA--CAAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCACC--AG---ATGCG-CATTTCAA--CAAATTAT-GTATCT-TCA----------T---ATCG-----AAATG-A-T-GGAAATCCGAAAT-ATGTAATTACAAATTT-TGAAGA-GCTAA----A-AATGG-AGTGCCAAAGA-CTG-GAGCCAAAGATGTT--GAAGG-ATCAG-AGC-CA-TGCCAGAGAA-AGATAATCATAA--TTT--ATTT---TTTT-TA--TTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAAT---A-TAGT-CGTATCAaattgtaa
gi|8 : ataataagatctctaA-A-TCCT-A-TAT----------AAT-T-TATTTA-TGCAACAAATGCGATAC-AATTTCCCG--ACCCACCCAAATT-ATG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGC-CAACCGA--AATGTTGGAAATC-CGAAACATGAAAT--TTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAGACT----G---------G-AGCCAAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcCT-----C-AAACCGA--AATGTTAGAAATC-CGAAAC-TTGAAT-GTTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGATT--GGG---------G---CCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAAT---TT---T-ACCACT--G--T--AA-TTAAA--TAC-------ATATC-CGTA-T-T--TCA-AGCT-AAT---AACATA-TTAC-AT-A----GCAACTGGGCTG----TAGA-GA--CC-CTC-GGGGAC-TAACAG----c
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 222222 11 1 11 1 11 1 1 11 1 4444444 11 11 1 1 1 2222 1 3333 1 1 2222 1 222 1 11 11 11 1 1 1 222 11 11111 1111 3333 222222 22222222 1 1111111 222222222222 11 2222 1 44444444444444444 1111 11111 11 111111 333333333 1 111 2222 33333 11 22222222 2222 1111 1111 33333 1 1111 11 11 111 11 1111111 11 1 222222222 22222 11111 11 11 1 1 444444 1 1 1 6666666666666 11 1 11 22 1 22222 1 1 1 11 1 222 1
lowQualScore : 1 8 8 333333 11 3 88 3 77 5 5 1 66 1 5 3333333 88 77 22 1 5 5 5 1 3333 5 6666 1 5 5 4444 1 5 222 5 88 88 3 2 1 33 0 0 5 3 8 8 444 11 6 77777 6 5555 1 6 9 8888 6 6 99 99 555555 6 6 44444444 3 66 4444444 77 5 1 222222222222 3 77 22 3333 4 7 4 4 66 77777777777777777 4 5555 66666 4 11 111111 666666666 3 7 8 777 8 2 4 222 0 3333 99999 2 11111 66 4 22 44444444 5 9999 77 5 5 8888 5 5 5 2222 00000 6 99 3 1 6 4444 0 8 8 99 0 11 0 8 3 8 444 1 11 8 1 0 9999999 8 3 11 0 0 8 88 111111111 0 00000 0 88888 99 00 0 1 0 1 111111 2 0 5 0 7777777777777 33 8 5 3 999 0 999 1 88 00 2 22222 3 6 3 0 7 3 7 0 7 88 1 5 22 1 222 22 5 1
lowQualScore : . . . ...... .. . .. . .. . . . .. . . ....... .. .. .. . . . . . .... . .... . . . .... . . ... . .. .. . . . .. . . . . . . ... .. . ..... . .... . . . .... . . .. .. ...... . . ........ . .. ....... .. . . ............ . .. .. .... . . . . .. ................. . .... ..... . .. ...... ......... . . . ... . . . ... . .... ..... . ..... .. . .. ........ . .... .. . . .... . . . .... ..... . .. . . . .... . . . .. . .. . . . . ... . .. . . . ....... . . .. . . . .. ......... . ..... . ..... .. .. . . . . ...... . . . . ............. .. . . . ... . ... . .. .. . ..... . . . . . . . . . .. . . .. . ... .. . .
lowQualScore : 0 0 0 000000 00 3 33 3 55 0 5 0 55 0 5 0000000 00 55 00 0 0 5 0 0 5555 5 5555 0 0 5 0000 0 5 000 5 00 55 2 5 0 88 0 0 0 2 0 0 888 00 7 77777 7 0000 0 7 3 7777 7 7 22 22 888888 7 7 22222222 3 22 6666666 99 7 7 333333333333 9 99 22 9999 4 8 4 4 88 11111111111111111 0 1111 88888 0 00 555555 000000000 6 3 0 000 0 0 0 555 5 3333 33333 9 22222 11 4 22 11111111 7 3333 99 7 7 4444 7 7 7 1111 77777 7 22 3 0 7 2222 8 0 0 00 8 66 6 6 8 0 000 4 00 0 4 8 4444444 0 2 00 8 6 0 88 888888888 6 00000 8 66666 44 22 0 2 0 0 555555 5 0 0 0 0000000000000 88 8 5 8 666 8 222 0 33 00 0 33333 3 7 3 7 3 3 3 7 3 55 0 0 00 0 000 00 5 0
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA----TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGT--A-TT--CA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-G-AGATAATCNTAA--TTT-GATATGAATTTT-AA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
Reference ( family-141 ) : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA----TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTT-A-TT--CA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-G-AGATAATCNTAA--TTT-GATATGAATTTT-AA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTCT-CAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAAG----TTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA---CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT--ATACATAGCAACGGGCTGATCAGAGACCCTCGGAGACTAA--CAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAATTAAAA-A-TCAT---TACGCTGTGA--C--AATATAT--TAT-TGCACCAGATGTGTCGC-A-TTTC--G--AC-------AATT-ATG-TCT---------TT-CAGTGGATGCT-----C-AAACCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGGGG---------G-GGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----T---T-ACCACT--G--C--AA-T--AA--TAC-----A-ATATC-CGTTCA-TT--CACAGC--AG----AACATATATCC-AT-AAGGCGCTTCTGGGCTGTGTTTAGA-GA--CC-CTCGGGGGA-CAACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC-CG--AGG--ATGCG-CATTGCGAAGCAAATTAT-GTCTCT-TCA-GTG-TG--CTCCAAACG-----AAATG-T-TTAGAAATCCGAAAC-TTGAATGTTTGAACTT-TTAAAA-GTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGC-ATATGCATGAG-G-AGATAATCTTAA--TTTGGATACGAATTTT-AATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGA-TAACAGAAATTATGAA-A-AATTAAAAGTGCTCGTATTTAT
gi|10 : AGCTAT--GCCTGAG-GGAGATAATCCTTACTTTT-GATATAAATTTCCAA--TTTTACTACTGCAATTCAATGC-ATATCCGTA-TTTTAAGCCAGTAACA-TAGTACATAGCAACTGGGCTG--TAGAGACCCTCGGGGACTAACAGTCAATACAAATATAATACAAAGTACTTG-AGTTAT
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-t
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA----TT---TTACCACT--G--C--AA-TTAAA--TA------G-ATATC-TGT--A-TTGTCA-AGCT-AGT---AGCATA-GTAC-AT-A----ACAACTGGGCTG---T-AGA-GA--CC-CTCAGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATAT-AATAAt
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTAAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATAT
gi|19 : aaacagaaacgGAGACCCTCGGGCACTAA--CAGTCCACCAGCAG-AGGC-TTCGACCgt
gi|2 : tgagTATAAGA-TAAT-A-TATG--GG-A--CC-AAT-T-----GA-TGCACCA--TGCG--GC-A-TTTC--GGGAC------AAATT-ATG-TCTC--------TT-CAGTGACT-CT-----C-AAACCGA--AATGGTGGAAATC-CGAAACATGAAA--GT--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAA---ACT---TG---------T-AGCCAAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAAT-C-TT---AATT-T-TG--T---ATGAATTGCTAA----TT---T-ATTACT--ATTC--AA-TTAAA--TACTCTGTACATATCGCGTA-T-TT--CA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG----TAGAGGA--CC-CTC-GGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCACC--A-G--ATGCG-CATTTT----C-AATTAT--TCTC--TCA--TGATGGCTTCAAAC-------AAA---T-TTGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : G---------G-AGCCAAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : ATTATAA-A-TCATTA-TATG--GT-A--CGCAAT-T-T--TGA-TGCACCAGATG-G-CGTTA-TTTC--G--ACC-----AAATT-ATA-TCGC--------TTTCAGGTGATGCT-----T-AAACCGA--AATGTTAGAAATC-CAAAAC--GGAAA-GTAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GGA---------G-C-CCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATAT----TT---T-ACCACTT-GT-C--AA-TTAAAATTAC-----A--TATC-CGT--A-TT--TA-AGCTTAG----AACATA-GTA--ATGA----GCAAATGGGCTG---TACGA-TT--CCGCTCGGGCAC-TAACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAAT-ACAGG-TA---CCAATTTT--G-ATACACTCAAGA--ATGCG-CATTTCGA--CAAAT-AT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC-AAAGA-CTG-------------TT--GAAGGCATCAG-AGCTAT-TGCCTG-G-G-AGA
gi|4 : aatatattatATTATAG-A-TCAT-ACTATG--GT-AACC--AAA-T-T--TGA-TGCACCAGAGG----GT-A-TTTC--G--AC------AAATT-ATAATCGC--------TTTCAGTG-ATGCT-----T-AAACCGA--AATGTTAGAAATCGCAAAAC-TAGAAA-GTAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GG------------AGCCAGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA----TT---TTACCACTTTG--TCAAA-TTAAAATTAC-----A--TATC-CGT--A-TT--TA-AGCT-AGTTAGAACATA-GTAC-AT-A----GCAAATGGGCTG---T-AGC-GATTCCGCTCGGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACACC--AAGTAATGCGGCATTTCGA--CAAAT-ATCGTCTCT-TCA-GTGACG--CTCAAACCT-----AAATG-T---GGAAATCCGAAAC-ATGAAATATTAAATTA-TAAAAA-GTGAA----CTAATGTGAGTGC-AAAGA-CTG-------------TT--GAAGGCATCAGAGCTTAT-TGCCTGAG-G-AGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT-GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAACGGGCTG--TAGAGACC--TGGGGACTAA--CAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAA-TATAA-AGTAAT-ATTACG--GT-A--C--AAT-T-T--TTACTGCACCA-ATG----GC-A--TTC--G--AC------AAGTTAATG-TCTC--------TT-CAGT-GATGCT-----CAAAACCG---AATATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAGATT--GGG------------GCCAAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA----TTCTAC-ACTACTGCG--C--AATTTAAA--TAC-------ATACC---TT-ATTT--CA-AGCT-A-----AACATA-G--C-AT-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA--CAAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCACC--AG---ATGCG-CATTTCAA--CAAATTAT-GTATCT-TCA----------T---ATCG-----AAATG-A-T-GGAAATCCGAAAT-ATGTAATTACAAATTT-TGAAGA-GCTAA----A-AATGG-AGTGCCAAAGA-CTG-GAGCCAAAGATGTT--GAAGG-ATCAG-AGCCA--TGCCAGAGAA-AGATAATCATAA--TTT--ATTT---TTTT-TA--TTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAAT---A-TAGT-CGTATCAaattgtaa
gi|8 : ataataagatctctaT-A--T--AAT-T-TATTTA-TGCAACAAATGCGATAC-AATTTCCCG--ACCCACCCAAATT-ATG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGC-CAACCGA--AATGTTGGAAATC-CGAAACATGAAAT--TTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAGACT----G---------G-AGCCAAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcaatcctaCT-----C-AAACCGA--AATGTTAGAAATC-CGAAAC-TTGAAT-GTTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGATT--GGG---------G---CCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAAT---TT---T-ACCACT--G--T--AA-TTAAA--TAC-------ATATC-CGTA-T-TT--CA-AGCT-AAT---AACATA-TTAC-AT-A----GCAACTGGGCTG----TAGA-GA--CC-CTCGGGGAC-TAACAG----c
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 222222 11 1 11 1 11 1 1 11 1 4444444 11 11 1 1 1 2222 1 3333 1 1 2222 1 222 1 11 11 11 1 1 1 222 11 11111 1111 3333 222222 22222222 1 11 1111111 222222222222 11 2222 1 44444444444444444 1111 11111 11 111111 333333333 1 111 2222 33333 11 22222222 1 1111 1111 33333 1 1111 11 11 111 11 1111111 11 1 222222222 22222 11111 11 11 1 1 444444 1 1 1 6666666666666 11 1 11 22 1 22222 1 1 1 11 1 222 1
lowQualScore : 1 8 8 333333 11 3 88 3 77 5 5 1 66 1 5 3333333 88 77 22 1 5 5 5 1 3333 5 6666 1 5 5 4444 1 5 222 5 88 88 3 2 1 33 0 0 5 3 8 8 444 11 6 77777 6 5555 1 6 9 8888 6 6 99 99 555555 6 6 44444444 3 11 4444444 77 5 1 222222222222 3 77 22 3333 4 7 4 4 66 77777777777777777 4 5555 66666 4 11 111111 666666666 3 7 8 777 8 2 4 222 0 3333 99999 2 11111 66 4 22 44444444 5 77 7 77 5 5 8888 5 5 5 2222 00000 6 99 3 1 6 4444 0 8 8 99 0 11 0 8 3 8 444 1 11 8 1 0 9999999 8 3 11 0 0 8 88 111111111 0 00000 0 88888 99 00 0 1 0 1 111111 2 0 5 0 7777777777777 33 8 5 3 999 0 999 1 88 00 2 22222 3 6 3 0 7 3 7 0 7 88 1 5 22 1 222 22 5 1
lowQualScore : . . . ...... .. . .. . .. . . . .. . . ....... .. .. .. . . . . . .... . .... . . . .... . . ... . .. .. . . . .. . . . . . . ... .. . ..... . .... . . . .... . . .. .. ...... . . ........ . .. ....... .. . . ............ . .. .. .... . . . . .. ................. . .... ..... . .. ...... ......... . . . ... . . . ... . .... ..... . ..... .. . .. ........ . .. . .. . . .... . . . .... ..... . .. . . . .... . . . .. . .. . . . . ... . .. . . . ....... . . .. . . . .. ......... . ..... . ..... .. .. . . . . ...... . . . . ............. .. . . . ... . ... . .. .. . ..... . . . . . . . . . .. . . .. . ... .. . .
lowQualScore : 0 0 0 000000 00 3 33 3 55 0 5 0 55 0 5 0000000 00 55 00 0 0 5 0 0 5555 5 5555 0 0 5 0000 0 5 000 5 00 55 2 5 0 88 0 0 0 2 0 0 888 00 7 77777 7 0000 0 7 3 7777 7 7 22 22 888888 7 7 22222222 3 88 6666666 99 7 7 333333333333 9 99 22 9999 4 8 4 4 88 11111111111111111 0 1111 88888 0 00 555555 000000000 6 3 0 000 0 0 0 555 5 3333 33333 9 22222 11 4 22 11111111 7 99 1 99 7 7 4444 7 7 7 1111 77777 7 22 3 0 7 2222 8 0 0 00 8 66 6 6 8 0 000 4 00 0 4 8 4444444 0 2 00 8 6 0 88 888888888 6 00000 8 66666 44 22 0 2 0 0 555555 5 0 0 0 0000000000000 88 8 5 8 666 8 222 0 33 00 0 33333 3 7 3 7 3 3 3 7 3 55 0 0 00 0 000 00 5 0
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA----TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGT--ATTT--CA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-G-AGATAATCNTAA--TTT-GATATGAATTTT-AA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
Reference ( family-141 ) : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA----TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGT--A-TT--CA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-G-AGATAATCNTAA--TTT-GATATGAATTTT-AA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTCT-CAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAAG----TTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA---CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT--ATACATAGCAACGGGCTGATCAGAGACCCTCGGAGACTAA--CAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAATTAAAA-A-TCAT---TACGCTGTGA--C--AATATAT--TAT-TGCACCAGATGTGTCGC-A-TTTC--G--AC-------AATT-ATG-TCT---------TT-CAGTGGATGCT-----C-AAACCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGGGG---------G-GGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----T---T-ACCACT--G--C--AA-T--AA--TAC-----A-ATATC-CGTTCA-TT--CACAGC--AG----AACATATATCC-AT-AAGGCGCTTCTGGGCTGTGTTTAGA-GA--CC-CTCGGGGGA-CAACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC-CG--AGG--ATGCG-CATTGCGAAGCAAATTAT-GTCTCT-TCA-GTG-TG--CTCCAAACG-----AAATG-T-TTAGAAATCCGAAAC-TTGAATGTTTGAACTT-TTAAAA-GTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGC-ATATGCATGAG-G-AGATAATCTTAA--TTTGGATACGAATTTT-AATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGA-TAACAGAAATTATGAA-A-AATTAAAAGTGCTCGTATTTAT
gi|10 : AGCTAT--GCCTGAG-GGAGATAATCCTTACTTTT-GATATAAATTTCCAA--TTTTACTACTGCAATTCAATGC-ATATCCGTA-TTTTAAGCCAGTAACA-TAGTACATAGCAACTGGGCTG--TAGAGACCCTCGGGGACTAACAGTCAATACAAATATAATACAAAGTACTTG-AGTTAT
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-t
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA----TT---TTACCACT--G--C--AA-TTAAA--TA------G-ATATC-TGT--A-TTGTCA-AGCT-AGT---AGCATA-GTAC-AT-A----ACAACTGGGCTG---T-AGA-GA--CC-CTCAGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATAT-AATAAt
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTAAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATAT
gi|19 : aaacagaaacgGAGACCCTCGGGCACTAA--CAGTCCACCAGCAG-AGGC-TTCGACCgt
gi|2 : tgagTATAAGA-TAAT-A-TATG--GG-A--CC-AAT-T-----GA-TGCACCA--TGCG--GC-A-TTTC--GGGAC------AAATT-ATG-TCTC--------TT-CAGT-GACTCT-----C-AAACCGA--AATGGTGGAAATC-CGAAACATGAAA--GT--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAA---ACT---TG---------T-AGCCAAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAAT-C-TT---AATT-T-TG--T---ATGAATTGCTAA----TT---T-ATTACT--ATTC--AA-TTAAA--TACTCTGTACATATCGCGT--ATTT--CA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG----TAGAGGA--CC-CTC-GGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCACC--A-G--ATGCG-CATTTT----C-AATTAT--TCTC--TCA--TGATGGCTTCAAAC-------AAA---T-TTGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : G---------G-AGCCAAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : ATTATAA-A-TCATTA-TATG--GT-A--CGCAAT-T-T--TGA-TGCACCAGATG-G-CGTTA-TTTC--G--ACC-----AAATT-ATA-TCGC--------TTTCAGGTGATGCT-----T-AAACCGA--AATGTTAGAAATC-CAAAAC--GGAAA-GTAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GGA---------G-C-CCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATAT----TT---T-ACCACTT-GT-C--AA-TTAAAATTAC-----A--TATC-CGT--A-TT--TA-AGCTTAG----AACATA-GTA--ATGA----GCAAATGGGCTG---TACGA-TT--CCGCTCGGGCAC-TAACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAAT-ACAGG-TA---CCAATTTT--G-ATACACTCAAGA--ATGCG-CATTTCGA--CAAAT-AT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC-AAAGA-CTG-------------TT--GAAGGCATCAG-AGCTAT-TGCCTG-G-G-AGA
gi|4 : aatatattatATTATAG-A-TCAT-ACTATG--GT-AACC--AAA-T-T--TGA-TGCACCAGAGG----GT-A-TTTC--G--AC------AAATT-ATAATCGC--------TTTCAGTG-ATGCT-----T-AAACCGA--AATGTTAGAAATCGCAAAAC-TAGAAA-GTAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GG------------AGCCAGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA----TT---TTACCACTTTG--TCAAA-TTAAAATTAC-----A--TATC-CGT--A-TT--TA-AGCT-AGTTAGAACATA-GTAC-AT-A----GCAAATGGGCTG---T-AGC-GATTCCGCTCGGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACACC--AAGTAATGCGGCATTTCGA--CAAAT-ATCGTCTCT-TCA-GTGACG--CTCAAACCT-----AAATG-T---GGAAATCCGAAAC-ATGAAATATTAAATTA-TAAAAA-GTGAA----CTAATGTGAGTGC-AAAGA-CTG-------------TT--GAAGGCATCAGAGCTTAT-TGCCTGAG-G-AGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT-GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAACGGGCTG--TAGAGACC--TGGGGACTAA--CAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAA-TATAA-AGTAAT-ATTACG--GT-A--C--AAT-T-T--TTACTGCACCA-ATG----GC-A--TTC--G--AC------AAGTTAATG-TCTC--------TT-CAGT-GATGCT-----CAAAACCG---AATATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAGATT--GGG------------GCCAAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA----TTCTAC-ACTACTGCG--C--AATTTAAA--TAC-------ATA-C-CTT--ATTT--CA-AGCT-A-----AACATA-G--C-AT-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA--CAAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCACC--AG---ATGCG-CATTTCAA--CAAATTAT-GTATCT-TCA----------T---ATCG-----AAATG-A-T-GGAAATCCGAAAT-ATGTAATTACAAATTT-TGAAGA-GCTAA----A-AATGG-AGTGCCAAAGA-CTG-GAGCCAAAGATGTT--GAAGG-ATCAG-AGCCA--TGCCAGAGAA-AGATAATCATAA--TTT--ATTT---TTTT-TA--TTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAAT---A-TAGT-CGTATCAaattgtaa
gi|8 : ataataagatctctaT-A--T--AAT-T-TATTTA-TGCAACAAATGCGATAC-AATTTCCCG--ACCCACCCAAATT-ATG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGC-CAACCGA--AATGTTGGAAATC-CGAAACATGAAAT--TTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAGACT----G---------G-AGCCAAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcaatcctaCT-----C-AAACCGA--AATGTTAGAAATC-CGAAAC-TTGAAT-GTTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGATT--GGG---------G---CCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAAT---TT---T-ACCACT--G--T--AA-TTAAA--TAC-------ATATC-CGT--ATTT--CA-AGCT-AAT---AACATA-TTAC-AT-A----GCAACTGGGCTG----TAGA-GA--CC-CTCGGGGAC-TAACAG----c
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 222222 11 1 11 1 11 1 1 11 1 4444444 11 11 1 1 1 2222 1 3333 1 1 2222 1 222 1 11 11 11 1 1 1 222 11 11111 1111 3333 222222 22222222 1 1111111 222222222222 11 2222 1 44444444444444444 1111 11111 11 111111 333333333 1 111 2222 22222 11 22222222 1111 1111 33333 1 1111 11 11 111 11 1111111 11 1 222222222 22222 11111 11 11 1 1 444444 1 1 1 6666666666666 11 1 11 1 444444444 22 22 1 2 33333 1 1 4 777
lowQualScore : 1 8 8 333333 11 3 88 3 77 5 5 1 66 1 5 3333333 88 77 22 1 5 5 5 1 3333 5 6666 1 5 5 4444 1 5 222 5 88 88 3 2 1 33 0 0 5 3 8 8 444 11 6 77777 6 5555 1 6 9 8888 6 6 99 99 555555 6 6 44444444 3 66 4444444 77 5 1 222222222222 3 77 22 3333 4 7 4 4 66 77777777777777777 4 5555 66666 4 00 000000 222222222 3 6 7 666 7 0 3 111 1 5555 777 8 1 77777 55 4 0 11 44444444 5 66 5 4 5 5 5555 5 5 5 0000 00000 5 77 1 5 2222 0 8 8 99 0 11 0 8 3 8 444 1 11 8 1 0 9999999 8 3 11 0 0 8 88 111111111 0 00000 0 88888 99 00 0 1 0 1 111111 2 0 5 0 7777777777777 33 8 5 7 33 3 0 1 000000000 4 77 33 5 0 4 22222 2 5 2 5 1 0 22 1 6 111 22 1
lowQualScore : . . . ...... .. . .. . .. . . . .. . . ....... .. .. .. . . . . . .... . .... . . . .... . . ... . .. .. . . . .. . . . . . . ... .. . ..... . .... . . . .... . . .. .. ...... . . ........ . .. ....... .. . . ............ . .. .. .... . . . . .. ................. . .... ..... . .. ...... ......... . . . ... . . . ... . .... ... . . ..... .. . . .. ........ . .. . . . . .... . . . .... ..... . .. . . .... . . . .. . .. . . . . ... . .. . . . ....... . . .. . . . .. ......... . ..... . ..... .. .. . . . . ...... . . . . ............. .. . . . .. . . . ......... . .. .. . . . ..... . . . . . . .. . . ... .. .
lowQualScore : 0 0 0 000000 00 3 33 3 55 0 5 0 55 0 5 0000000 00 55 00 0 0 5 0 0 5555 5 5555 0 0 5 0000 0 5 000 5 00 55 2 5 0 88 0 0 0 2 0 0 888 00 7 77777 7 0000 0 7 3 7777 7 7 22 22 888888 7 7 22222222 3 22 6666666 99 7 7 333333333333 9 99 22 9999 4 8 4 4 88 11111111111111111 0 1111 88888 0 00 555555 777777777 3 7 3 444 3 9 6 444 0 0000 000 0 6 11111 55 0 6 00 44444444 0 99 0 5 0 0 0000 0 0 0 6666 77777 7 99 4 7 1111 8 0 0 00 8 66 6 6 8 0 000 4 00 0 4 8 4444444 0 2 00 8 6 0 88 888888888 6 00000 8 66666 44 22 0 2 0 0 555555 5 0 0 0 0000000000000 88 8 5 0 22 2 0 0 555555555 0 55 00 0 0 0 00000 5 5 5 5 0 0 00 0 0 000 00 0
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAAT---TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATNCGAATTTTNATGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGA-TAACAGAAATTATGAA-A-AATTAAAAGTGCTCGTATTTAT
Reference ( family-141 ) : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATGAATTTCTAA----TT---T-ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG---TTAGA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTT-GATATGAATTTTAA--TTTTACCACTGCAATTAAATAC-ATATCCGTA-TTTCGAGCTAATAACA-TAGTACGTAGCAACTGGGCTGTATAGAGACCNTCGGGGACTAACAGNNANTACGAATATAATNNAAAGTGCTCGTANTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTCT-CAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAAG----TTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA---CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT--ATACATAGCAACGGGCTGATCAGAGACCCTCGGAGACTAA--CAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAATTAAAA-A-TCAT---TACGCTGTGA--C--AATATAT--TAT-TGCACCAGATGTGTCGC-A-TTTC--G--AC-------AATT-ATG-TCT---------TT-CAGTGGATGCT-----C-AAACCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGGGG---------G-GGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----T---T-ACCACT--G--C--AA-T--AA--TAC-----A-ATATC-CGT-TCAT-TCACAGC--AG----AACATATATCC-AT-AAGGCGCTTCTGGGCTGTGTTTAGA-GA--CC-CTCGGGGGA-CAACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC-CG--AGG--ATGCG-CATTGCGAAGCAAATTAT-GTCTCT-TCA-GTG-TG--CTCCAAACG-----AAATG-T-TTAGAAATCCGAAAC-TTGAATGTTTGAACTT-TTAAAA-GTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGC-ATATGCATGAG-GAGATAATCTTAATTTGGATACGAATTTTAATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGA-TAACAGAAATTATGAA-A-AATTAAAAGTGCTCGTATTTAT
gi|10 : A--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---ACTT-T-TG-AT---ATAAATTTCCAAT---TT---T-ACTACT--G--C--AA-TTCAA--TGC-------ATATC-CGTAT--T-TTA-AGCC-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG----TAGA-GA--CC-CTCGGGGAC-TAACAG----TC
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-aatacaaatataatacaaagtacttgagttat
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT---T-A-CACT--GCTC--AA-TTCAA--TAC-----A-t
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA----TT---TTACCACT--G--C--AA-TTAAA--TA------G-ATATC-TGTAT--TGTCA-AGCT-AGT---AGCATA-GTAC-AT-A----ACAACTGGGCTG---T-AGA-GA--CC-CTCAGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATAT-AATAAt
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTAAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATAT
gi|19 : aaacagaaacgGAGACCCTCGGGCACTAA--CAGTCCACCAGCAG-AGGC-TTCGACCgt
gi|2 : tgagTATAAGA-TAAT-A-TATG--GG-A--CC-AAT-T-----GA-TGCACCA--TGCG--GC-A-TTTC--GGGAC------AAATT-ATG-TCTC--------TT-CAGTGACT-CT-----C-AAACCGA--AATGGTGGAAATC-CGAAACATGAAA--GT--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAA---ACT---TG---------T-AGCCAAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAAT-C-TT---AATT-T-TG--T---ATGAATTGCTAA----TT---T-ATTACT--ATTC--AA-TTAAA--TACTCTGTACATATCGCGTAT--T-TCA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG----TAGAGGA--CC-CTC-GGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCACC--A-G--ATGCG-CATTTT----C-AATTAT--TCTC--TCA--TGATGGCTTCAAAC-------AAA---T-TTGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : G---------G-AGCCAAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : ATTATAA-A-TCATTA-TATG--GT-A--CGCAAT-T-T--TGA-TGCACCAGATG-G-CGTTA-TTTC--G--ACC-----AAATT-ATA-TCGC--------TTTCAGGTGATGCT-----T-AAACCGA--AATGTTAGAAATC-CAAAAC--GGAAA-GTAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GGA---------G-C-CCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATAT----TT---T-ACCACTT-GT-C--AA-TTAAAATTAC-----A--TATC-CGTAT--T-T-A-AGCTTAG----AACATA-GTA--ATGA----GCAAATGGGCTG---TACGA-TT--CCGCTCGGGCAC-TAACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAAT-ACAGG-TA---CCAATTTT--G-ATACACTCAAGA--ATGCG-CATTTCGA--CAAAT-AT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC-AAAGA-CTG-------------TT--GAAGGCATCAG-AGCTAT-TGCCTG-G-GAGA
gi|4 : aatatattatATTATAG-A-TCAT-ACTATG--GT-AACC--AAA-T-T--TGA-TGCACCAGAGG----GT-A-TTTC--G--AC------AAATT-ATAATCGC--------TTTCAGTG-ATGCT-----T-AAACCGA--AATGTTAGAAATCGCAAAAC-TAGAAA-GTAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GG------------AGCCAGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA----TT---TTACCACTTTG--TCAAA-TTAAAATTAC-----A--TATC-CGTAT--T-T-A-AGCT-AGTTAGAACATA-GTAC-AT-A----GCAAATGGGCTG---T-AGC-GATTCCGCTCGGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACACC--AAGTAATGCGGCATTTCGA--CAAAT-ATCGTCTCT-TCA-GTGACG--CTCAAACCT-----AAATG-T---GGAAATCCGAAAC-ATGAAATATTAAATTA-TAAAAA-GTGAA----CTAATGTGAGTGC-AAAGA-CTG-------------TT--GAAGGCATCAGAGCTTAT-TGCCTGAG-GAGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT-GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAACGGGCTG--TAGAGACC--TGGGGACTAA--CAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAA-TATAA-AGTAAT-ATTACG--GT-A--C--AAT-T-T--TTACTGCACCA-ATG----GC-A--TTC--G--AC------AAGTTAATG-TCTC--------TT-CAGT-GATGCT-----CAAAACCG---AATATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAGATT--GGG------------GCCAAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA----TTCTAC-ACTACTGCG--C--AATTTAAA--TAC-------ATA-C-CTTAT--T-TCA-AGCT-A-----AACATA-G--C-AT-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA--CAAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCACC--AG---ATGCG-CATTTCAA--CAAATTAT-GTATCT-TCA----------T---ATCG-----AAATG-A-T-GGAAATCCGAAAT-ATGTAATTACAAATTT-TGAAGA-GCTAA----A-AATGG-AGTGCCAAAGA-CTG-GAGCCAAAGATGTT--GAAGG-ATCAG-AGCCA--TGCCAGAGAAAGATAATCATAATTT--ATTT---TTTTTA--TTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAAT---A-TAGT-CGTATCAaattgtaa
gi|8 : ataataagatctctaT-A--T--AAT-T-TATTTA-TGCAACAAATGCGATAC-AATTTCCCG--ACCCACCCAAATT-ATG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGC-CAACCGA--AATGTTGGAAATC-CGAAACATGAAAT--TTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAGACT----G---------G-AGCCAAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcaatcctaCT-----C-AAACCGA--AATGTTAGAAATC-CGAAAC-TTGAAT-GTTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGATT--GGG---------G---CCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAAT---TT---T-ACCACT--G--T--AA-TTAAA--TAC-------ATATC-CGTAT--T-TCA-AGCT-AAT---AACATA-TTAC-AT-A----GCAACTGGGCTG----TAGA-GA--CC-CTCGGGGAC-TAACAG----c
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 222222 11 1 11 1 11 1 1 11 1 4444444 11 11 1 1 1 2222 1 3333 1 1 2222 1 222 1 11 11 11 1 1 1 222 11 11111 1111 3333 222222 22222222 1 1111111 222222222222 11 2222 1 44444444444444444 1111 11111 11 111111 333333333 1 111 111 22222 11 22222222 1111 1111 33333 1 1111 11 11 111 11 1111111 11 1 222222222 22222 11111 11 11 1 1 444444 1 1 1 6666666666666 11 1 11 1 11 33333 11 1 1 2222 1 1
lowQualScore : 1 8 8 333333 11 3 88 3 77 5 5 1 66 1 5 3333333 88 77 22 1 5 5 5 1 3333 5 6666 1 5 5 4444 1 5 222 5 88 88 3 2 1 33 0 0 5 3 8 8 444 11 6 77777 6 5555 1 6 9 8888 6 6 99 99 555555 6 6 44444444 3 66 4444444 77 5 1 222222222222 3 77 22 3333 4 7 4 4 7 66666666666666666 4 5555 66666 4 00 000000 222222222 3 6 7 666 7 0 3 111 444 55 55 55555 55 4 0 11 44444444 5 66 5 4 5 5 5555 5 5 5 0000 00000 8888 1 4 5 2222 0 8 8 99 0 11 0 8 3 8 444 1 11 8 1 0 9999999 8 3 11 0 0 8 88 111111111 0 00000 0 88888 99 00 0 1 0 1 111111 2 0 5 0 7777777777777 33 8 5 7 33 3 0 1 77 11111 55 66 5 5 1 3333 1 5 1 5
lowQualScore : . . . ...... .. . .. . .. . . . .. . . ....... .. .. .. . . . . . .... . .... . . . .... . . ... . .. .. . . . .. . . . . . . ... .. . ..... . .... . . . .... . . .. .. ...... . . ........ . .. ....... .. . . ............ . .. .. .... . . . . . ................. . .... ..... . .. ...... ......... . . . ... . . . ... ... .. .. ..... .. . . .. ........ . .. . . . . .... . . . .... ..... .... . . . .... . . . .. . .. . . . . ... . .. . . . ....... . . .. . . . .. ......... . ..... . ..... .. .. . . . . ...... . . . . ............. .. . . . .. . . . .. ..... .. .. . . . .... . . . .
lowQualScore : 0 0 0 000000 00 3 33 3 55 0 5 0 55 0 5 0000000 00 55 00 0 0 5 0 0 5555 5 5555 0 0 5 0000 0 5 000 5 00 55 2 5 0 88 0 0 0 2 0 0 888 00 7 77777 7 0000 0 7 3 7777 7 7 22 22 888888 7 7 22222222 3 22 6666666 99 7 7 333333333333 9 99 22 9999 4 8 4 4 3 66666666666666666 0 1111 88888 0 00 555555 777777777 3 7 3 444 3 9 6 444 000 55 55 00000 55 0 6 00 44444444 0 99 0 5 0 0 0000 0 0 0 6666 77777 3333 4 3 7 1111 8 0 0 00 8 66 6 6 8 0 000 4 00 0 4 8 4444444 0 2 00 8 6 0 88 888888888 6 00000 8 66666 44 22 0 2 0 0 555555 5 0 0 0 0000000000000 88 8 5 0 22 2 0 0 55 55555 00 00 0 5 0 5555 0 5 0 5
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACT--AACAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTT--T--ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG---TTAGAG-A--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATACGAATTTTNNTGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
Reference ( family-141 ) : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACT--AACAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTT--T--ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG---TTAGAG-A--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATNCGAATTTTNATGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTCT-CAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAAG----TTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA---CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT--ATACATAGCAACGGGCTGATCAGAGACCCTCGGAGACT--AACAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAATTAAAA-A-TCAT---TACGCTGTGA--C--AATATAT--TAT-TGCACCAGATGTGTCGC-A-TTTC--G--AC-------AATT-ATG-TCT---------TT-CAGTGGATGCT-----C-AAACCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGGGG---------G-GGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----T--T--ACCACT--G--C--AA-T--AA--TAC-----A-ATATC-CGT-TCAT-TCACAGC--AG----AACATATATCCA-T-AAGGCGCTTCTGGGCTGTGTTTAGAG-A--CC-CTCGGGGGA-CAACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC-CG--AGG--ATGCG-CATTGCGAAGCAAATTAT-GTCTCT-TCA-GTG-TG--CTCCAAACG-----AAATG-T-TTAGAAATCCGAAAC-TTGAATGTTTGAACTT-TTAAAA-GTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGC-ATATGCATGAG-GAGATAATCTTAATTTGGATACGAATTTTAATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
gi|10 : A--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---ACTT-T-TG-AT---ATAAATTTCCAA---TTT--T--ACTACT--G--C--AA-TTCAA--TGC-------ATATC-CGTAT--T-TTA-AGCC-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG----TAGAG-A--CC-CTCGGGGAC-TAACAG----TC
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT--T--A-CACT--GCTC--AA-TTCAA--TAC-----A-aatacaaatataatacaaagtacttgagttat
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT--T--A-CACT--GCTC--AA-TTCAA--TAC-----A-t
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA---TTT--T--ACCACT--G--C--AA-TTAAA--TA------G-ATATC-TGTAT--TGTCA-AGCT-AGT---AGCATA-GTACA-T-A----ACAACTGGGCTG----TAGAG-A--CC-CTCAGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATAT-AATAAt
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTAAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATAT
gi|19 : aaacagaaacgGAGACCCTCGGGCACT--AACAGTCCACCAGCAG-AGGC-TTCGACCgt
gi|2 : tgagTATAAGA-TAAT-A-TATG--GG-A--CC-AAT-T-----GA-TGCACCA--TGCG--GC-A-TTTC--GGGAC------AAATT-ATG-TCTC--------TT-CAGTGACT-CT-----C-AAACCGA--AATGGTGGAAATC-CGAAACATGAAA--GT--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAAA---CT--TGT-----------AGCCAAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATC--TT---AATT-T-TG--T---ATGAATTGCTAA---TTTATT--ACTATT-----C--AA-TTAAA--TACTCTGTACATATCGCGTAT--T-TCA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG---T-AGAGGA--CC-CTCGGG-AC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCACC--A-G--ATGCG-CATTTT----C-AATTAT--TCTC--TCA--TGATGGCTTCAAAC-------AAA---T-TTGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : G---------G-AGCCAAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : ATTATAA-A-TCATTA-TATG--GT-A--CGCAAT-T-T--TGA-TGCACCAGATG-G-CGTTA-TTTC--G--ACC-----AAATT-ATA-TCGC--------TTTCAGGTGATGCT-----T-AAACCGA--AATGTTAGAAATC-CAAAAC--GGAAA-GTAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GGA---------G-C-CCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATA----TTT--T--ACCACTT-GT-C--AA-TTAAAATTAC-----A--TATC-CGTAT--T-T-A-AGCTTAG----AACATA-GTA-A-TGA----GCAAATGGGCTG---TACGAT-T--CCGCTCGGGCAC-TAACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAAT-ACAGG-TA---CCAATTTT--G-ATACACTCAAGA--ATGCG-CATTTCGA--CAAAT-AT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC-AAAGA-CTG-------------TT--GAAGGCATCAG-AGCTAT-TGCCTG-G-GAGA
gi|4 : aatatattatATTATAG-A-TCAT-ACTATG--GT-AACC--AAA-T-T--TGA-TGCACCAGAGG----GT-A-TTTC--G--AC------AAATT-ATAATCGC--------TTTCAGTG-ATGCT-----T-AAACCGA--AATGTTAGAAATCGCAAAAC-TAGAAA-GTAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GG------------AGCCAGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA---TTT--T--ACCACTTTG--TCAAA-TTAAAATTAC-----A--TATC-CGTAT--T-T-A-AGCT-AGTTAGAACATA-GTACA-T-A----GCAAATGGGCTG---T-AGCG-ATTCCGCTCGGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACACC--AAGTAATGCGGCATTTCGA--CAAAT-ATCGTCTCT-TCA-GTGACG--CTCAAACCT-----AAATG-T---GGAAATCCGAAAC-ATGAAATATTAAATTA-TAAAAA-GTGAA----CTAATGTGAGTGC-AAAGA-CTG-------------TT--GAAGGCATCAGAGCTTAT-TGCCTGAG-GAGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT-GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAACGGGCTG--TAGAGACC--TGGGGACT--AACAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAA-TATAA-AGTAAT-ATTACG--GT-A--C--AAT-T-T--TTACTGCACCA-ATG----GC-A--TTC--G--AC------AAGTTAATG-TCTC--------TT-CAGT-GATGCT-----CAAAACCG---AATATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAGATT--GGG------------GCCAAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA---TTC--TACACTACTGCG--C--AATTTAAA--TAC-------ATA-C-CTTAT--T-TCA-AGCT-A-----AACATA-G--CA-T-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA--CAAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCACC--AG---ATGCG-CATTTCAA--CAAATTAT-GTATCT-TCA----------T---ATCG-----AAATG-A-T-GGAAATCCGAAAT-ATGTAATTACAAATTT-TGAAGA-GCTAA----A-AATGG-AGTGCCAAAGA-CTG-GAGCCAAAGATGTT--GAAGG-ATCAG-AGCCA--TGCCAGAGAAAGATAATCATAATTT--AT-----TTTTTTTATTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAATA----TAGT-CGTATCAaattgtaa
gi|8 : ataataagatctctaT-A--T--AAT-T-TATTTA-TGCAACAAATGCGATAC-AATTTCCCG--ACCCACCCAAATT-ATG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGC-CAACCGA--AATGTTGGAAATC-CGAAACATGAAAT--TTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAGACT----G---------G-AGCCAAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcaatcctaCT-----C-AAACCGA--AATGTTAGAAATC-CGAAAC-TTGAAT-GTTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGATT--GGG---------G---CCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAA---TTT--T--ACCACT--G--T--AA-TTAAA--TAC-------ATATC-CGTAT--T-TCA-AGCT-AAT---AACATA-TTACA-T-A----GCAACTGGGCTG----TAGAG-A--CC-CTCGGGGAC-TAACAG----c
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 222222 11 1 11 1 11 1 1 11 1 4444444 11 11 1 1 1 2222 1 3333 1 1 2222 1 222 1 11 11 11 1 1 1 222 11 11111 1111 3333 222222 22222222 1 1111111 222222222222 11 2222 1 44444444444444444 1111 11111 11 111111 333333333 1 111 111 22222 11 22222222 1111 1111 33333 1 1111 11 11 111 11 1111111 11 1 222222222 22222 11111 11 11 1 1 444444 1 1 1 6666666666666 11 1 11 1 11 22222 11 1 1 2222 1 1
lowQualScore : 1 8 8 333333 11 3 88 3 77 5 5 1 66 1 5 3333333 88 77 22 1 5 5 5 1 3333 5 6666 1 5 5 4444 1 5 222 5 88 88 3 2 1 33 0 0 5 3 8 8 444 11 6 77777 6 5555 1 6 9 8888 6 6 99 99 555555 6 6 44444444 3 66 4444444 77 5 1 222222222222 3 77 22 3333 4 7 4 4 7 66666666666666666 4 5555 66666 4 00 000000 222222222 3 6 7 666 7 0 3 111 444 55 55 55555 55 4 0 11 44444444 5 66 5 4 5 5 5555 5 5 5 0000 00000 8888 1 4 5 2222 0 8 8 99 0 11 0 8 3 8 444 1 11 8 1 0 9999999 8 3 11 0 0 8 88 111111111 0 00000 0 88888 99 00 0 1 0 1 111111 2 0 5 0 7777777777777 33 8 5 7 33 3 0 1 77 66666 22 66 5 5 1 3333 1 5 1 5
lowQualScore : . . . ...... .. . .. . .. . . . .. . . ....... .. .. .. . . . . . .... . .... . . . .... . . ... . .. .. . . . .. . . . . . . ... .. . ..... . .... . . . .... . . .. .. ...... . . ........ . .. ....... .. . . ............ . .. .. .... . . . . . ................. . .... ..... . .. ...... ......... . . . ... . . . ... ... .. .. ..... .. . . .. ........ . .. . . . . .... . . . .... ..... .... . . . .... . . . .. . .. . . . . ... . .. . . . ....... . . .. . . . .. ......... . ..... . ..... .. .. . . . . ...... . . . . ............. .. . . . .. . . . .. ..... .. .. . . . .... . . . .
lowQualScore : 0 0 0 000000 00 3 33 3 55 0 5 0 55 0 5 0000000 00 55 00 0 0 5 0 0 5555 5 5555 0 0 5 0000 0 5 000 5 00 55 2 5 0 88 0 0 0 2 0 0 888 00 7 77777 7 0000 0 7 3 7777 7 7 22 22 888888 7 7 22222222 3 22 6666666 99 7 7 333333333333 9 99 22 9999 4 8 4 4 3 66666666666666666 0 1111 88888 0 00 555555 777777777 3 7 3 444 3 9 6 444 000 55 55 00000 55 0 6 00 44444444 0 99 0 5 0 0 0000 0 0 0 6666 77777 3333 4 3 7 1111 8 0 0 00 8 66 6 6 8 0 000 4 00 0 4 8 4444444 0 2 00 8 6 0 88 888888888 6 00000 8 66666 44 22 0 2 0 0 555555 5 0 0 0 0000000000000 88 8 5 0 22 2 0 0 55 55555 00 00 0 5 0 5555 0 5 0 5
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACT--AACAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTT--T--ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG---TTAGAG-A--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATACGAATTTTNNTGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
Reference ( family-141 ) : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACT--AACAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTT--T--ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG---TTAGAG-A--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATACGAATTTTNNTGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTCT-CAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAAG----TTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA---CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT--ATACATAGCAACGGGCTGATCAGAGACCCTCGGAGACT--AACAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAATTAAAA-A-TCAT---TACGCTGTGA--C--AATATAT--TAT-TGCACCAGATGTGTCGC-A-TTTC--G--AC-------AATT-ATG-TCT---------TT-CAGTGGATGCT-----C-AAACCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGGGG---------G-GGCCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----T--T--ACCACT--G--C--AA-T--AA--TAC-----A-ATATC-CGT-TCAT-TCACAGC--AG----AACATATATCCA-T-AAGGCGCTTCTGGGCTGTGTTTAGAG-A--CC-CTCGGGGGA-CAACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC-CG--AGG--ATGCG-CATTGCGAAGCAAATTAT-GTCTCT-TCA-GTG-TG--CTCCAAACG-----AAATG-T-TTAGAAATCCGAAAC-TTGAATGTTTGAACTT-TTAAAA-GTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGC-ATATGCATGAG-GAGATAATCTTAATTTGGATACGAATTTTAATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
gi|10 : A--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---ACTT-T-TG-AT---ATAAATTTCCAA---TTT--T--ACTACT--G--C--AA-TTCAA--TGC-------ATATC-CGTAT--T-TTA-AGCC-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG----TAGAG-A--CC-CTCGGGGAC-TAACAG----TC
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT--T--A-CACT--GCTC--AA-TTCAA--TAC-----A-aatacaaatataatacaaagtacttgagttat
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-GACT--TGGCATAACCGCGTAGTCAAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTT--T--A-CACT--GCTC--AA-TTCAA--TAC-----A-t
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA---TTT--T--ACCACT--G--C--AA-TTAAA--TA------G-ATATC-TGTAT--TGTCA-AGCT-AGT---AGCATA-GTACA-T-A----ACAACTGGGCTG----TAGAG-A--CC-CTCAGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATAT-AATAAt
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTAAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATAT
gi|19 : aaacagaaacgGAGACCCTCGGGCACT--AACAGTCCACCAGCAG-AGGC-TTCGACCgt
gi|2 : tgagTATAAGA-TAAT-A-TATG--GG-A--CC-AAT-T-----GA-TGCACCA--TGCG--GC-A-TTTC--GGGAC------AAATT-ATG-TCTC--------TT-CAGTGACT-CT-----C-AAACCGA--AATGGTGGAAATC-CGAAACATGAAA--GT--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAAA---CT--TGT-----------AGCCAAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATC--TT---AATT-T-TG--T---ATGAATTGCTAA---TTTATT--ACTATT-----C--AA-TTAAA--TACTCTGTACATATCGCGTAT--T-TCA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG---T-AGAGGA--CC-CTCGGG-AC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCACC--A-G--ATGCG-CATTTT----C-AATTAT--TCTC--TCA--TGATGGCTTCAAAC-------AAA---T-TTGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : G---------G-AGCCAAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : ATTATAA-A-TCATTA-TATG--GT-A--CGCAAT-T-T--TGA-TGCACCAGATG-G-CGTTA-TTTC--G--ACC-----AAATT-ATA-TCGC--------TTTCAGGTGATGCT-----T-AAACCGA--AATGTTAGAAATC-CAAAAC--GGAAA-GTAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GGA---------G-C-CCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATA----TTT--T--ACCACTT-GT-C--AA-TTAAAATTAC-----A--TATC-CGTAT--T-T-A-AGCTTAG----AACATA-GTA-A-TGA----GCAAATGGGCTG---TACGAT-T--CCGCTCGGGCAC-TAACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAAT-ACAGG-TA---CCAATTTT--G-ATACACTCAAGA--ATGCG-CATTTCGA--CAAAT-AT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC-AAAGA-CTG-------------TT--GAAGGCATCAG-AGCTAT-TGCCTG-G-GAGA
gi|4 : aatatattatATTATAG-A-TCAT-ACTATG--GT-AACC--AAA-T-T--TGA-TGCACCAGAGG----GT-A-TTTC--G--AC------AAATT-ATAATCGC--------TTTCAGTG-ATGCT-----T-AAACCGA--AATGTTAGAAATCGCAAAAC-TAGAAA-GTAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT--GG------------AGCCAGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA---TTT--T--ACCACTTTG--TCAAA-TTAAAATTAC-----A--TATC-CGTAT--T-T-A-AGCT-AGTTAGAACATA-GTACA-T-A----GCAAATGGGCTG---T-AGCG-ATTCCGCTCGGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACACC--AAGTAATGCGGCATTTCGA--CAAAT-ATCGTCTCT-TCA-GTGACG--CTCAAACCT-----AAATG-T---GGAAATCCGAAAC-ATGAAATATTAAATTA-TAAAAA-GTGAA----CTAATGTGAGTGC-AAAGA-CTG-------------TT--GAAGGCATCAGAGCTTAT-TGCCTGAG-GAGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT-GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAACGGGCTG--TAGAGACC--TGGGGACT--AACAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAA-TATAA-AGTAAT-ATTACG--GT-A--C--AAT-T-T--TTACTGCACCA-ATG----GC-A--TTC--G--AC------AAGTTAATG-TCTC--------TT-CAGT-GATGCT-----CAAAACCG---AATATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAGATT--GGG------------GCCAAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA---TTC--TACACTACTGCG--C--AATTTAAA--TAC-------ATA-C-CTTAT--T-TCA-AGCT-A-----AACATA-G--CA-T-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA--CAAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCACC--AG---ATGCG-CATTTCAA--CAAATTAT-GTATCT-TCA----------T---ATCG-----AAATG-A-T-GGAAATCCGAAAT-ATGTAATTACAAATTT-TGAAGA-GCTAA----A-AATGG-AGTGCCAAAGA-CTG-GAGCCAAAGATGTT--GAAGG-ATCAG-AGCCA--TGCCAGAGAAAGATAATCATAATTT--AT-----TTTTTTTATTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAATA----TAGT-CGTATCAaattgtaa
gi|8 : ataataagatctctaT-A--T--AAT-T-TATTTA-TGCAACAAATGCGATAC-AATTTCCCG--ACCCACCCAAATT-ATG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGC-CAACCGA--AATGTTGGAAATC-CGAAACATGAAAT--TTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAGACT----G---------G-AGCCAAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcaatcctaCT-----C-AAACCGA--AATGTTAGAAATC-CGAAAC-TTGAAT-GTTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGATT--GGG---------G---CCAAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAA---TTT--T--ACCACT--G--T--AA-TTAAA--TAC-------ATATC-CGTAT--T-TCA-AGCT-AAT---AACATA-TTACA-T-A----GCAACTGGGCTG----TAGAG-A--CC-CTCGGGGAC-TAACAG----c
blockSeqs : C T A . . . . . . . T G T G . CTGAC TG GG GC A . A . A CCTT T TAT C C . T T . AA A CA . A C C AA C T . T G G TA . . CGC . TAT G C G CGAT T A CC GG CCACCC A A GTAACCAG T GA TCGTGC . G G TAGAAAGTAA A AT AA ACCC T T C . A TGGCATAACCGCGTA C TTTT AGCC C CT TACATG GCATCGTTA T T T . G G . TGA TTT AT AC GCT CA T AT TCTGTACA G . G T . T TTAG . A G . TA ATT G G C . G . A AA G G T CCC A TG . G CAAGA G G . T C TG TGATGGC TGTGA GTGTT AG TA A A A G GT G G C . GAGCCAAAGATG . C A T T A A A . . TT C C T A . G . T A
blockSeqs : . . . . . . . A C C . . . T . . AC . . ACC . T G . G CG . . . . C . . . T TG CA . . A ATGAAATTTA G . AA ACT . T . . A TGGCATAACCGCGTA . TTTT AGCC . CT . GCATTCGTA . T T . G G . . TTT . . GCT . . AT GA . . . C . . T . . . . T GA G G . . . . . AA C A . . A . . A AAGTA . G . T . T AGTGACG . TTT A AT . A . G CT G . . . . . C . T T A .
blockSeqs : . . . . . . G . . . . . . AT . . CC . T G . A GC . . . . . . . . . GA C . . A TTGAATGTTG T . . ACT . A . . A GGAGC . T TA . . . T . . . . . A . . . . . TGT . . . A . . . C . . T . . . . T A . C . . . . . A T A . . A . . A AG . A . . . T GTGACG . AT A AT . G . T A G . . . . . . . C . . .
blockSeqs : . . . . . . A . . C . T T . . . . . . . . . . . . G T . . G GGAAAGTAA A . . A . G . . A TGTA . T A . . . . . . . . . . . . . . . TTG . . . A . . . C . . T . . . . T A . C . . . . . . . A . . T . . T AG . . . . . . . . T . A
blockSeqs : . T . . T . . . . . . . . . . . . G T . . G ATGAAAGT A . . A . . . . A GGGG . T T . . . . . . . . . . . . . . . GCG . . . A . . . C . . T . . . . T T . G . .
blockSeqs : C . . . G . . . T . . . . . GGA . T T . . . . . . . . . . . . . . . G . . . A . . . . . . . . . . . T A . . . .
blockSeqs : . T . . . . . GGG . T T . . . . . . . . . . . . . . . G . . . A . . . . . . . . . . .
blockSeqs : . . . . . . . GGA . A A . . . . . . . . . . . . . . . G . . .
blockSeqs : . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . .
blockSeqCons : ****** ** AN* ** T*** **** ** ATGAAAGTTG** GGA************** *** *** GCT** A******* ** T*** **** T**** **** ** AG***** ** TGACG**** NTT**
originalCons : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACT--AACAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCAT-A-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATGCG-CGC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGGAAT-GTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT--GGG---------G-AGCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTT--T--ACCACT--G--C--AA-TTAAA--TAC-----A-ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTG---TTAGAG-A--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--AGG--ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA-GTGACG--CTCAAACCG-----AAATG-T-TTGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATACGAATTTTNNTGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
finalCons : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACT--AACAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCATAN-TACG--GT-A--C--AAT-TT---TGA-TGCACCAGATG----GC-A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACATGAAAGTTG--AAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACTGGA--------------GCCAAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTT--T--ACCACTGCT--C--AA-TTAAA--TACA-------TATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTACA-T-A----GCAACTGGGCTGT----AGAG-A--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACCAG-----ATGCG-CATTTCGA--CAAATTAT-GTCTCT-TCATGACG----CTCAAACCG-----AAATGNTT--GGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATACGAATTTTNNTGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT
Alignments
lowQualScore : 222222 11 1 11 1 11 1 1 11 1 4444444 11 11 1 1 1 2222 1 3333 1 1 2222 1 222 1 11 11 11 1 1 1 11 11 11111 1111 2222 111 222222 22222222 1 1111111 111 11 2222 1 1111 44444444444 1111 11111 11 111111 333333333 1 111 111 11 11 1111111 1111 1111 1111 1 1111 11 11 111 11 11111111 11 1 333333333 22222 11111 11 11 1 1 444444 1 1 1 6666666666666 11 1 11 1 11 22222 11 1 1 2222 1 1
lowQualScore : 1 8 8 333333 11 3 88 3 77 5 5 1 66 1 5 3333333 88 77 22 1 5 5 5 1 3333 5 6666 1 5 5 4444 1 5 222 5 88 88 3 3 1 33 0 0 5 3 8 8 77 11 6 77777 6 5555 1 6 5 8888 111 6 99 99 555555 6 6 44444444 3 66 4444444 77 5 1 444 66 99 3 77 22 3333 4 7 4 4 7 6666 22222222222 4 4 5555 66666 4 00 000000 222222222 3 6 7 666 7 0 3 111 444 55 1 55 55 4 0 11 7777777 5 66 5 4 5 5 5555 5 5 5 0000 2222 5 5 77 1 5 2222 0 8 8 99 0 11 0 8 3 8 444 1 11 8 1 0 77777777 8 8 3 11 0 0 8 88 111111111 0 00000 99999 99 00 0 1 0 1 111111 2 0 5 0 7777777777777 33 8 5 7 33 3 0 1 77 66666 22 66 5 5 1 3333 1 5 1 5
lowQualScore : . . . ...... .. . .. . .. . . . .. . . ....... .. .. .. . . . . . .... . .... . . . .... . . ... . .. .. . . . .. . . . . . . .. .. . ..... . .... . . . .... ... . .. .. ...... . . ........ . .. ....... .. . . ... .. .. . .. .. .... . . . . . .... ........... . . .... ..... . .. ...... ......... . . . ... . . . ... ... .. . .. .. . . .. ....... . .. . . . . .... . . . .... .... . . .. . . .... . . . .. . .. . . . . ... . .. . . . ........ . . . .. . . . .. ......... . ..... ..... .. .. . . . . ...... . . . . ............. .. . . . .. . . . .. ..... .. .. . . . .... . . . .
lowQualScore : 0 0 0 000000 00 3 33 3 55 0 5 0 55 0 5 0000000 00 55 00 0 0 5 0 0 5555 5 5555 0 0 5 0000 0 5 000 5 00 55 2 2 0 88 0 0 0 2 0 0 66 00 7 77777 7 0000 0 7 2 3333 777 7 22 22 888888 7 7 22222222 3 22 6666666 99 7 7 999 00 33 9 99 22 9999 4 8 4 4 3 5555 00000000000 0 0 1111 88888 0 00 555555 777777777 3 7 3 444 3 9 6 444 000 55 6 55 22 0 6 00 0000000 0 99 0 5 0 0 0000 0 0 0 6666 1111 7 7 99 4 7 1111 8 0 0 00 8 66 6 6 8 0 000 4 00 0 4 8 22222222 0 0 2 00 8 6 0 88 000000000 6 00000 22222 44 22 0 2 0 0 555555 5 0 0 0 0000000000000 88 8 5 0 22 2 0 0 55 55555 00 00 0 5 0 5555 0 5 0 5
consensus : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCATA-TACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATG----GC---A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACN-TGAA-AGTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT----GG-----------AGCC-AAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTTT--ACCACT--GCTCAA-TTAAA--TAC-------ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG----TA-GA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--A-G---A-TGCG-CATTTCGA--CAAATTAT-GTCTCT-TCAG-TGACG--CTCAAACCG-----AAATG-T--TGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATACGAATTTTNNTGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
Reference ( family-141 ) : AANATTGTATA-ATATAAATCATAT-AC------GGT--ACCAATTTTTATGCACC-AGATGC--GCATT-TCGACCCAAATCTATGTCTCTTCAGTGATGCTNAANACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAANTTTGTAAAGCTGATTNAGTCATCTGAATGTGGAGTNNCANAGACTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGGAGAGAGTNATCCCTTAATTTTGATATCGGGTTTNTAATTCCCCACCACTGCAATTAAGATGACATNATCCGTATTTTCAAGCTTAAGTAACATCAGTACATAGCAACGGGCTGATCAGAGACCCTCGGGNACTAA--CAGTCCACCAGCAG-AGGC-CTCGACCAGGGTCATAATTATAA-A-TCATANTACG--GT-A--C--AAT-T-T--TGA-TGCACCAGATG----GC---A-TTTC--G--AC------AAATT-ATG-TCTC--------TT-CAGTGGATGCT-----C-AAACCGA--AATGTTGGAAATC-CGAAACA-TGAA-AGTTGAAACTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGACT----GG-----------AGCC-AAAT-ACTT---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ATAAATTTCTAA---TTTT--ACCACT--GCTCAA-TTAAA--TAC-------ATATC-CGTAT--T-TCA-AGCT-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG----TA-GA-GA--CC-CTCGGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--GGGGTCATAATATAAATAATTACAGG-TA---CCAATTTT--G-ATGCACC--A-G---A-TGCG-CATTTCGA--CAAATTAT-GTCTCT-TCA--TGACG--CTCAAACCG-----AAATGNT--TGGAAATCCGAAAC-GTGAAANTTTAAATTT-TAAAAA-GTNAA----C-AATGT-AGTGCCAAAGA-CTG-GGGCCAAAGATGTT--GAAGGCATCAGAAGCTAT-TGCCTGAG-GAGATAATCNTAATTTGGATACGAATTTTNNTGTTTCACCACTGCAATTAAATACGNTATCCGTATTTTCGAGCTNATAACAGTANTACGTGNCAACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
gi|1 : AAAATTATAGA-ATATAAATGATAT-ACCTGTGGGGTTGACCAATTTTTATGCACCCAGATGCACGCATTGTCGACCCAAATCTATGTCTCT-CAGTGATGCTCAAAACCGAAACTGTTGGGATATATAATCGGTAATGAAGTTGTTAAACTTTATAAAG----TTAAGTCATC--AATGT--AGTCGCACAAATTGGGGCCGACATATTACCGAGTGATGGTGTTGTGTAGTCAGAGCTAGGCTCGGAGG-GAAAGTTATC----AATTT-GA---CAGGTTTATAATTCTTCAC-ACTGCAATTAAGATGACATGATCCGTATTTTCAAGCTTA-GTA-CAT--ATACATAGCAACGGGCTGATCAGAGACCCTCGGAGACTAA--CAGTCCAACAGCAG-AGGC-CCCGACCAGAGTCATAATTAAAA-A-TCAT--TACGCTGTGA--C--AATATAT--TAT-TGCACCAGATGTGTCGC---A-TTTC--G--AC-------AATT-ATG-TCT---------TT-CAGTGGATGCT-----C-AAACCCACGAATGTTGGGAATC-CGAAACATTGAATGGTTGAAACTTTA--T--AA--GTGA---TCA-CT-GC-AGTGCCCAAAAGCATGGGGGG-----------GGCC-AAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCCTGAGGGAG-A-TACTCC-TTTGCAATT-T-TACATTG-ATGAATTTATAA-----TT--ACCACT--G--CAA-T--AA--TACA------ATATC-CGT-TCAT-TCACAGC--AG----AACATATATCC-AT-AAGGCGCTTCTGGGCTGTGTTTA-GA-GA--CC-CTCGGGGGA-CAACAGAGATTCC-CCAG-CAGAAGGCCTCGACCCTAAGGGCGGTAA-ATATATCATTAC-TG-TA---CCATTTTT--GAATGC-CG--AGG---A-TGCG-CATTGCGAAGCAAATTAT-GTCTCT-TCAG-TG-TG--CTCCAAACG-----AAATGTT--TAGAAATCCGAAAC-TTGAATGTTTGAACTT-TTAAAA-GTTGATCTTC-AAT-T-AGTGCCAAAAAGTTGAGGGCCAAAAATACTACGAAGGAATCAGAAGC-ATATGCATGAG-GAGATAATCTTAATTTGGATACGAATTTTAATGTTTTACCACTGTAATTAAATACGATAT-CGTA-TTTCGAACTTATAACAGTATTACATGGC-ACTGGGCTGTATAGAGACCGTCGGGGATAACAGAAATTATGAAAAATTAAAAGTGCTCGTATTTAT
gi|10 : A--GC------TA---------TGCCTGAGGGAG-A-TAATCC-TT---ACTT-T-TG-AT---ATAAATTTCCAA---TTTT--ACTACT--GC--AA-TTCAA--TGC-------ATATC-CGTAT--T-TTA-AGCC-AGT---AACATA-GTAC-AT-A----GCAACTGGGCTG----TA-GA-GA--CC-CTCGGGGAC-TAACAG----TC
gi|11 : --GTGA---ACA-ATTGT-AGTG-CCATA-GACTT---GGCATAACCGCGTAGTC-AAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTTT--A-CACT--GCTCAA-TTCAA--TAC-------ATaatacaaatataatacaaagtacttgagttat
gi|12 : cctataataaaccaatt--GTGA---ACA-ATTGT-AGTG-CCATA-GACTT---GGCATAACCGCGTAGTC-AAAT-ACTTTTTCG-AGCCAG-GATCAGACTGC------TA---------TGCCTGAGGGAG-ATTAATCCTTT---AATTGTGTG-AT---ATAAATTTCCAATTTTTTT--A-CACT--GCTCAA-TTCAA--TAC-------AT
gi|13 : cctataataaaccaatt-A-TAATCC-TT---AATT-T-TG-AT---CTTAATGTCTAA---TTTT--ACCACT--GC--AA-TTAAA--TAG-------ATATC-TGTAT--TGTCA-AGCT-AGT---AGCATA-GTAC-AT-A----ACAACTGGGCTG----TA-GA-GA--CC-CTCAGGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCAACCCA-GGGATCATAATAT-AATAA
gi|15 : TA-ATATAAATCATATAAC------GGT--ACCAATTTT
gi|16 : cccaggtgtctgcgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTA-ATATAAATCATAT-AC------GGT--ACCAATTTT
gi|18 : caggtgtctgtgtttgtcgaactcttcttttttataaacttttgattgatcactgtttgttatcatcgcattttgatTAAAGTT-GTAAAGCTGA--CAATTATTTGAATATGGAGTGCCAAAGACTGGAGCCAA-ATAT
gi|19 : aaacagaaacgGAGACCCTCGGGCACTAA--CAGTCCACCAGCAG-AGGC-TTCGACCgt
gi|2 : tgagTATAAGA-TAATA-TATG--GG-A--CC-AAT-T-----GA-TGCACCATGCG----GC---A-TTTC--GGGAC------AAATT-ATG-TCTC--------TT-CAGTGACT-CT-----C-AAACCGA--AATGGTGGAAATC-CGAAACA-TGAA-AGT--AAACTTTA--TAAAA--GTGA----CA-ATAGT-AGTG-CCAAA---CT----TGT----------AGCC-AAAT-ACTT---TG-A---AGCGATCAGA--GC------TA---------TGCCTGAGGGAG-A-TAATC--TT---AATT-T-TG--T---ATGAATTGCTAA---TTT---ATTACT--ATTCAA-TTAAA--TACTCTGTACATATCGCGTAT--T-TCA-AGCT-AGT---AA-ATA-GTACAAT-A----GCAACTGGGCTG----TA-GAGGA--CC-CTC-GGGAC-TAACAG----TCCACCAG-CAG-AGGCCTCGACCC--AG---TATAATAT-----ATGACGGGTTACCCCCAATTCTTGG-ATGCACC--A-G---A-TGCG-CATTTT----C-AATTAT--TCTC--TCA--TGATGGCTTCAAAC-------AAAT--T--TGGAAATCCGAAGC--TAAATATTTcatacaatatg
gi|20 : gccgtaacccttttatattgggacaatcacggagtatccgtagtcaaaaagcagtgtaaaacgaactacctaataacaaaaagtagtgaaacacgtcagacaacatttatccaatgacagattgtatattggcaatggattccgttacttaacaaTATA-TTATAAATAATAT-AC------GGC--ACCAATTTCTATGCACC-AGATGT--GCATT-TCGgtcgaaatgctggataaa
gi|21 : gcAGAG-CCCTCGGGCACTAAAACAGTCCACCCGCAGCAGGC-TTCGACC
gi|22 : ----GG-----------AGCC-AAAT-ACTT---CG-T---AG-GATCAGA--GCTACATGTA---------TGCCTGAGGGAT-A-Tcatacaat
gi|3 : ATTATAA-A-TCATTATATG--GT-A--CGCAAT-T-T--TGA-TGCACCAGATG----GCGTTA-TTTC--G--ACC-----AAATT-ATA-TCGC--------TTTCAGGTGATGCT-----T-AAACCGA--AATGTTAGAAATC-CAAAACG--GAA-AGTAAAAGCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT----GG-----------AGCCCAGATCACTT---CG-T---AG-GATCAGA--GC------TAGCATCGTTATGCCTGAGGGATTA-TAACCC-TT---AATT-T-TG-AT---ATAAATTTATA----TTTT--ACCACT--TGTCAA-TTAAAATTAC-------ATATC-CGTAT--T-T-A-AGCTTAG----AACATA-GTA--ATGA----GCAAATGGGCTG----TACGA-TT--CCGCTCGGGCAC-TAACAG----TCCACCAGGCAG-AGGCCTCGACCC--GGGGTCATAGTATAAATAAT-ACAGG-TA---CCAATTTT--G-ATACACTCAA-G---AATGCG-CATTTCGA--CAAAT-AT-GTCTCTGTCAAGTGACG--CTCAAACCGTGTGAAAATGGTGTTGGAAATCCGAAACAGTGAAA-TTTAAATGTATAAAAAAGTGAAG---T-AATGT-AGTGC-AAAGA-CTG-------------TT--GAAGGCATCAG-AGCTAT-TGCCTG-G-GAGA
gi|4 : aatatattatATTATAG-A-TCATACTATG--GT-AACC--AAA-T-T--TGA-TGCACCAGAGG----GT---A-TTTC--G--AC------AAATT-ATAATCGC--------TTTCAGTG-ATGCT-----T-AAACCGA--AATGTTAGAAATCGCAAAACT-AGAA-AGTAAAATCTTTA--TAAAAAAGTGAAC-TCA-AT-GT-AGTA-CCAATAGACT----GG-----------AGCC-AGAT-ACTT---CG-T---AG-GATCAGA--GC------TAGCATTCGTATGCCTGAGGATT-A-TA-CCC-TT---AATT-T-TG-AT---ATAAATTTATAA---TTTT--ACCACTTTGTCAAA-TTAAAATTAC-------ATATC-CGTAT--T-T-A-AGCT-AGTTAGAACATA-GTAC-AT-A----GCAAATGGGCTG----TA-GC-GATTCCGCTCGGGCACCTAACAG----TCCACCAG-CAG-GGGCCTCGACCC--GGGGTCATAGTATAAATAATCACAGG-TA---CCAATTTT--G-ATACACC--A-AGTAA-TGCGGCATTTCGA--CAAAT-ATCGTCTCT-TCAG-TGACG--CTCAAACCT-----AAATG----TGGAAATCCGAAAC-ATGAAATATTAAATTA-TAAAAA-GTGAA----CTAATGTGAGTGC-AAAGA-CTG-------------TT--GAAGGCATCAGAGCTTAT-TGCCTGAG-GAGA
gi|5 : tattatGAGGAGAGA-TAATTCCTTAATTTTGATAT-GAATTTCTAATTTCCTACCACTGCA-TTAA--T-ACATTATCCGTATTT-CAAGCT-AAGTAACATCAGTACATAGCAACGGGCTG--TAGAGACCT--GGGGACTAA--CAGTCCACCAGCAG-CGGCTCTCGATCAGGGT-ATAA-TATAA-AGTAATATTACG--GT-A--C--AAT-T-T--TTACTGCACCA-ATG----GC---A--TTC--G--AC------AAGTTAATG-TCTC--------TT-CAGT-GATGCT-----CAAAACCG---AATATTGGAAATC-C----------------GAAACTTTA--TAAAA---TGA---TCA-AT-GTCAGTG-CCAAAAGATT----GG-----------GGCC-AAAA-ACTT---CG-A---AG-GATCAGA--GC------TAT--------TGCCTGAGGGAG-C-TAATCC-TA---ATTT-T-TG-AT---ATGAATTTCTAA---TTCTACACTACT--GCGCAATTTAAA--TAC-------ATA-C-CTTAT--T-TCA-AGCT-A-----AACATA-G--C-AT-A----GCAACTGGG
gi|6 : ctAACATTGTACATACAAAAATCATAT-AC------GGT--ACCAATTTTGATGCACC-ATATGC--GCATT-TCGA--CAAAT-TATGTCTCTTCAGTGATGCTGAAT-CCGAAA
gi|7 : cgaaaacgtatgggctcacggcgggtgtgacggatcaacaggagatgcttactcctcctagacacccgatcccacctcttgtgtgtccagggtccgtgtttgcccactcatgtttttatatttcatttgtgacttactatattgatcactgtttgttgcctttgccttTACAG--TA---CCATTTTT--G-ATTCACC--A-G---A-TGCG-CATTTCAA--CAAATTAT-GTATCT-TCA--T-----------ATCG-----AAATGAT---GGAAATCCGAAAT-ATGTAATTACAAATTT-TGAAGA-GCTAA----A-AATGG-AGTGCCAAAGA-CTG-GAGCCAAAGATGTT--GAAGG-ATCAG-AGCCA--TGCCAGAGAAAGATAATCATAATTT--AT-----TTTTTTTATTTCACCATTGCAATTAAATAT-CTATCCGTATTTTCAAGCTAATA----TAGT-CGTATCAaattgtaa
gi|8 : ataataagatctctaT-A--T--AAT-T-TATTTA-TGCAACAAATGCGATAC---AATTTCCCG--ACCCACCCAAATT-ATG-GATCGTAACCAGTT-CAGTGAATGTTTCGTGC-CAACCGA--AATGTTGGAAATC-CGAAACA-TGAA-ATTTAAAACTATAATTAAAA--GTGAACCCCATATGGT-AGTG-CC-AAAGACT----GG-----------AGCC-AAAT-AAT-----GTA---TA-TATCA-A--GC------TA---------TGCCTGAG---A-A-TAATCC--T---AATT-TATA-ATTGAGTAAATTTCc
gi|9 : aaaataatatgttcaatcctaCT-----C-AAACCGA--AATGTTAGAAATC-CGAAACT-TGAA-TGTTGAA-CTTTA--TAAAA--GTGA---TCA-AT-GT-AGTG-CCAAAAGATT----GG-----------GGCC-AAAT-ACTA---CG-A---AG-GATCAGA--GC------TA---------TGCATGAGGGAG-A-TAATCC-TT---AATT-T-TG-AT---ACGAATTTCTAA---TTTT--ACCACT--G--TAA-TTAAA--TAC-------ATATC-CGTAT--T-TCA-AGCT-AAT---AACATA-TTAC-AT-A----GCAACTGGGCTG----TA-GA-GA--CC-CTCGGGGAC-TAACAG----c
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): GTGAAACGCTGCCCTGACCCATATCTGATGTATCCAGGGGTCCGTGTTTGCCCAACTCTTGATTTGTATTCTATCAGTATCAGGAACTAACGAGAGCACCATTCGTTATCTTTGCCTATATGAACTACAAA
Unaligned ( gi|17 ): CAAAAATTACCAAAATTCAGACAAGATTATTATTAAACAAAATGGCGGGTATAGAAATTGGTGTGATTTTCTTTTGTTAATCCTATGGTA
Unaligned ( gi|23 ): TTTCTGATAACTATCGCAAACAAGATTGTTATAGGTAAAAT