lowQualScore                  :                    111111111                     1111                                                                                                   
lowQualScore                  :         4444   2   444444444      88 22   7 0    9999 111 3333 555      333      2   2    888888    22  6666 22 2 2  55  2    2       2 5 2 2  2        
lowQualScore                  :         ....   .   .........      .. ..   . .    .... ... .... ...      ...      .   .    ......    ..  .... .. . .  ..  .    .       . . . .  .        
lowQualScore                  :         2222   0   999999999      33 66   3 9    3333 888 7777 444      000      4   1    222222    99  7777 99 1 1  00  1    1       4 0 5 7  9        
consensus                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGAC--ATG-CCTAAG----T-C-A----T---AAGACA---TGTTTT-CGA-TTGA------GTCC--TANG--T--T-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
Reference ( gi|112844 )       : GACATGTC----TTA-GGA-----TG-GTCTTAGGAC--ATG-CTTAAG----T-C-A----T---AAGACA---TGTTTT-CGA-TTGA------GTCC--TATG--T--T-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112842                     : GACATGTC----TTA-GGA-----TG-ATCTTTGGAC--ATG-CTTAAG----T-C-A----T---AAGACA---TGTTTT-CGA-TTGA------GTCC--TATG--T--T-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112845                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGAC--ATG-CTTAAG----T-C-A----T---AAGACA---TGTTTT-GGA-TTGA------GTCC--TAAG--T--T-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATC
gi|112846                     : GACATGTC----TTAAGGA-----TG-GTCTTAGGAC--ATG-CCTAAG----T-C-A----T---AAGACA---TGTTTT-CGA-TTGA------GTCCTATATG--T--T-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATTT
gi|112843                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGAC--ATA-CTTAAG----T-C-A----T---AAGACA---TGTTTT-CGA-TTGA------GTCT--TAAA--T--T-A-AG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112847                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGAC--ATG-TTTAAT----T-C-A----T---AAGACA---TGTTCT-CGA--TGAC-----GTCC--TAAG--T--T-A-GG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112849                     : GGCATATC----TTA-GTA-----TG-GTCTTAGGGC--ATG-CTTAAG----T-C-A----T---AAAGCA---TGTTTT-CTA-TTGA------GTTC--TAAG--T--T-A-AG--AT-TCGT-CTTAAGA-T-A-A-GA-TTCGGTCT
gi|112848                     : GGCATGTC----TTA-GGA-----TG-GTATTTGGCC--ATG-CTTAAG----C-C-A----T---AAGACA---TGTTTT-CGA-TTGA------ATCC--TAAA--T--T-A-GG--AT-TCAT-CCTAA
gi|112850                     : GATATGTC----TTA-GGAATGAGCG-GTCTTAGGAC--ATG-TTT----------------T---A-GACA---TGTTTT-CGA-TTGA------GTCC--TAAG--T--T-A-GGATAT-TCGC-CCTCAGA-T-A-A-GA-TTCCATCT
gi|112842                     :  ACATGTC----TTA-TGA----------CTTAAG-C--ATGTCCAAAGA---T-C-A----TCCTAAGACA---TGT
gi|112845                     : gACATGTC----TTA-TGA----------CTTAAG-C--ATGTCCTAAGACCAT-C-C----T---AAGACA---TGTtttcgattgagtcctatgttaggattcgtcctaagataagattcaatct
gi|112846                     : gACATGTC----TTA-TGA----------CTTAGG-C--ATGTCCTAAGA---C-C-ATCCTT---AAGACA---TGTtttggattgagtcctaagttaggattcgtcctaagataagattcaatc
gi|112843                     : gACATGTC----TTA-TGA----------CTTAAG-T--ATGTCCTAAGACCAT-C-C----T---AAGACA---TGTtttcgattgagtcctatatgttaggattcgtcctaagataagattcaattt
gi|112852                     : gACATGTC----TTA-TTA------G-GTCTTAG-AC--ATG-CTTA------T-C-A----T---AAGACA---TGTTTT-CGA-TTGA-------TCC--TAGA--T--T-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCTtttcgattgagtcttaaattaagattcatcctaagataagattcaatct
gi|112852                     :  ACATGTC----TTA-TGA-----TA------AG--C--ATG-TCTAAGACC-T-A-A----T---AAGACA---TGT
gi|112851                     :  ACATGTC----TTA-TTA------G-GTCTTAG-AC--ATG-CTTA------T-C-A----T---AAGACA---TGTTTT-CGA-TTGA-------TCC--TAGA--T--T-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCTtttcgattgatcctagattagaattcatctaagataaagattcaatct
gi|112851                     :  ACATGTC----TTA-TGA-----TA------AG--C--ATG-TCTAAGACC-T-A-A----T---AAGACA---TGT
gi|112853                     :  ATATGTCCTAGTTA-GAG-----TG-GTCTTACGTC--ACC-C-----------------------AGAAA---TGT----CGA-TTGA------GTCT--TGCG--T--T-A-GG--AT-TCGT-CCTAAGA-T-A-A-AA-CTGAATCtttcgattgatcctagattagaattcatctaagataaagattcaatct
gi|112854                     :   CGTGTC----T-A-GAA-----TG-GTCTTTGGGC--ATG-TTT-AG----T-----------------------TTTT-TGA-TTGA------ATTC--TAAG--T--TGA-GG--AGATCATGCCTAAGT-T-A-A-G
gi|112843                     :     TATC----TTA-GGA-----TGAATCTTA------AT---TTAAGAC--T-CAA----TCG-AAAACA---TGTCTTATGACTTAA------G-----TATG--TCCT-A-AG--A--CCAT-CCTAAGA-C-A-
gi|112855                     :  gacaGTT----TTA-GAA-----AGTGTCTTAGGAC-------------------------T---ACGACA---TGTTTT-GGA-TCGA------GTCC--TAAG--T--T-A-GG--AT-TTTT-CCTAAAA-T-A-A-GA-TTCAATCTagattcaatct
gi|112846                     :                             TCTTAGGACGAAT--CCTAAC----A-T-A----T---AGGAC---------T-CAA-TCGAAAACATGTCT--TATGACT--T-A-GGC-AT---GT-CCTAAGA-
gi|112856                     :                        gacatgtcttaaggatggG-CGTGAA----T-C-A----T---AAGACA---TGTTTT-CGA-TTGA------G-----------------------T-TCGT-CCTAAGA-T-ATATGA-TTCAATCTtaagattcaattt
gi|112857                     :                                               AAG----TTC-A----T---AAGACACCGTATTGT-CGA-TTGA------GTCC--TATG--T--T-ATGG--A--TCGT-CCTAAGATT-A-A-GACTCCGATCT
gi|112843                     :                                                                                    GA-TTGA------ATCT--TATC--T--T-A-GG--AT-GAAT-CTTAATT-T-A-A-GA-CTCAATC
gi|112847                     :                                gacatgtcttaggatggtcttaggacatacttaagtcataagacatgttttcGA-TTGA------ATCT--TATC--T--T-A-GG--AT-GAAT-CCTAAt





Alignments
lowQualScore                  :         6666   2   888888 2              5 333 2         444             2    33  1   2 2  33  2    2       2 5 2 2  2        
lowQualScore                  :         ....   .   ...... .              . ... .         ...             .    ..  .   . .  ..  .    .       . . . .  .        
lowQualScore                  :         1111   9   111111 9              1 111 5         444             5    44  9   5 5  44  5    5       7 3 7 7  9        
consensus                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCC--TAAGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
Reference ( family-984 )      : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCCTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCC--TANGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112842                     : GACATGTC----TTA-GGA-----TG-ATCTTTGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCC--TATGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112843                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATACTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCT--TAAATT-A-AG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112844                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCC--TATGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112845                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTGGATTGA-GTCC--TAAGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATC
gi|112846                     : GACATGTC----TTAAGGA-----TG-GTCTTAGGACATGCCTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTATATGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATTT
gi|112847                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGTTTAATT-CATAAGACA---TGTTCTCGA-TGACGTCC--TAAGTT-A-GG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112848                     : GGCATGTC----TTA-GGA-----TG-GTATTTGGCCATGCTTAAGC-CATAAGACA---TGTTTTCGATTGA-ATCC--TAAATT-A-GG--AT-TCAT-CCTAA
gi|112849                     : GGCATATC----TTA-GTA-----TG-GTCTTAGGGCATGCTTAAGT-CATAAAGCA---TGTTTTCTATTGA-GTTC--TAAGTT-A-AG--AT-TCGT-CTTAAGA-T-A-A-GA-TTCGGTCT
gi|112850                     : GATATGTC----TTA-GGAATGAGCG-GTCTTAGGACATGTTT-------TA-GACA---TGTTTTCGATTGA-GTCC--TAAGTT-A-GGATAT-TCGC-CCTCAGA-T-A-A-GA-TTCCATCT
gi|112851                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCC--TAGATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112852                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCC--TAGATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112853                     :  ATATGTCCTAGTTA-GAG-----TG-GTCTTACGTCAC-CC----------AGAAA---TG---TCGATTGA-GTCT--TGCGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-AA-CTGAATC
gi|112854                     :   CGTGTC----T-A-GAA-----TG-GTCTTTGGGCATGTTT-AGT---------------TTTTTGATTGA-ATTC--TAAGTTGA-GG--AGATCATGCCTAAGT-T-A-A-G
gi|112855                     :      GTT----TTA-GAA-----AGTGTCTTAGGAC-------------TACGACA---TGTTTTGGATCGA-GTCC--TAAGTT-A-GG--AT-TTTT-CCTAAAA-T-A-A-GA-TTCAATCT
gi|112856                     :                                        GCGTGAAT-CATAAGACA---TGTTTTCGATTGA-G-------------------T-TCGT-CCTAAGA-T-ATATGA-TTCAATCT
gi|112857                     :                                            AAGTTCATAAGACACCGTATTGTCGATTGA-GTCC--TATGTT-ATGG--A--TCGT-CCTAAGATT-A-A-GACTCCGATCT





Alignments
lowQualScore                  :         6666   2   888888 2                 55 2         444             2      555   2 2  33  2    2       2 5 2 2  2        
lowQualScore                  :         ....   .   ...... .                 .. .         ...             .      ...   . .  ..  .    .       . . . .  .        
lowQualScore                  :         1111   9   111111 9                 11 5         444             5      888   5 5  44  5    5       7 3 7 7  9        
consensus                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
Reference ( family-984 )      : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112842                     : GACATGTC----TTA-GGA-----TG-ATCTTTGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-T-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112843                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATACTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCTTA-A-ATT-A-AG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112844                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-T-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112845                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTGGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATC
gi|112846                     : GACATGTC----TTAAGGA-----TG-GTCTTAGGACATGCCTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTATATGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATTT
gi|112847                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGTTTAATT-CATAAGACA---TGTTCTCGA-TGACGTCCTA-A-GTT-A-GG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112848                     : GGCATGTC----TTA-GGA-----TG-GTATTTGGCCATGCTTAAGC-CATAAGACA---TGTTTTCGATTGA-ATCCTA-A-ATT-A-GG--AT-TCAT-CCTAA
gi|112849                     : GGCATATC----TTA-GTA-----TG-GTCTTAGGGCATGCTTAAGT-CATAAAGCA---TGTTTTCTATTGA-GTTCTA-A-GTT-A-AG--AT-TCGT-CTTAAGA-T-A-A-GA-TTCGGTCT
gi|112850                     : GATATGTC----TTA-GGAATGAGCG-GTCTTAGGACATGTTT-------TA-GACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GGATAT-TCGC-CCTCAGA-T-A-A-GA-TTCCATCT
gi|112851                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCCTA-G-ATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112852                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCCTA-G-ATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112853                     :  ATATGTCCTAGTTA-GAG-----TG-GTCTTACGTCACCC-----------AGAAA---TGT---CGATTGA-GTCTTG-C-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-AA-CTGAATC
gi|112854                     :   CGTGTC----T-A-GAA-----TG-GTCTTTGGGCATGTTTA-GT---------------TTTTTGATTGA-ATTCTA-A-GTTGA-GG--AGATCATGCCTAAGT-T-A-A-G
gi|112855                     :      GTT----TTA-GAA-----AGTGTCTTAGGAC-------------TACGACA---TGTTTTGGATCGA-GTCCTA-A-GTT-A-GG--AT-TTTT-CCTAAAA-T-A-A-GA-TTCAATCT
gi|112856                     :                                        GCGTGAAT-CATAAGACA---TGTTTTCGATTGA-G-------------------T-TCGT-CCTAAGA-T-ATATGA-TTCAATCT
gi|112857                     :                                            AAGTTCATAAGACACCGTATTGTCGATTGA-GTCCTA-T-GTT-ATGG--A--TCGT-CCTAAGATT-A-A-GACTCCGATCT





Alignments
lowQualScore                  :         6666   2   888888 2                 55 2         444             2      555   2 2  33  2    2       2 5 2 2  2        
lowQualScore                  :         ....   .   ...... .                 .. .         ...             .      ...   . .  ..  .    .       . . . .  .        
lowQualScore                  :         1111   9   111111 9                 11 5         444             5      888   5 5  44  5    5       7 3 7 7  9        
consensus                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
Reference ( family-984 )      : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112842                     : GACATGTC----TTA-GGA-----TG-ATCTTTGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-T-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112843                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATACTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCTTA-A-ATT-A-AG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112844                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-T-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112845                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTGGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATC
gi|112846                     : GACATGTC----TTAAGGA-----TG-GTCTTAGGACATGCCTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTATATGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATTT
gi|112847                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGTTTAATT-CATAAGACA---TGTTCTCGA-TGACGTCCTA-A-GTT-A-GG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112848                     : GGCATGTC----TTA-GGA-----TG-GTATTTGGCCATGCTTAAGC-CATAAGACA---TGTTTTCGATTGA-ATCCTA-A-ATT-A-GG--AT-TCAT-CCTAA
gi|112849                     : GGCATATC----TTA-GTA-----TG-GTCTTAGGGCATGCTTAAGT-CATAAAGCA---TGTTTTCTATTGA-GTTCTA-A-GTT-A-AG--AT-TCGT-CTTAAGA-T-A-A-GA-TTCGGTCT
gi|112850                     : GATATGTC----TTA-GGAATGAGCG-GTCTTAGGACATGTTT-------TA-GACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GGATAT-TCGC-CCTCAGA-T-A-A-GA-TTCCATCT
gi|112851                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCCTA-G-ATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112852                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCCTA-G-ATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112853                     :  ATATGTCCTAGTTA-GAG-----TG-GTCTTACGTCACCC-----------AGAAA---TGT---CGATTGA-GTCTTG-C-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-AA-CTGAATC
gi|112854                     :   CGTGTC----T-A-GAA-----TG-GTCTTTGGGCATGTTTA-GT---------------TTTTTGATTGA-ATTCTA-A-GTTGA-GG--AGATCATGCCTAAGT-T-A-A-G
gi|112855                     :      GTT----TTA-GAA-----AGTGTCTTAGGAC-------------TACGACA---TGTTTTGGATCGA-GTCCTA-A-GTT-A-GG--AT-TTTT-CCTAAAA-T-A-A-GA-TTCAATCT
gi|112856                     :                                        GCGTGAAT-CATAAGACA---TGTTTTCGATTGA-G-------------------T-TCGT-CCTAAGA-T-ATATGA-TTCAATCT
gi|112857                     :                                            AAGTTCATAAGACACCGTATTGTCGATTGA-GTCCTA-T-GTT-ATGG--A--TCGT-CCTAAGATT-A-A-GACTCCGATCT


blockSeqs                     :         CTAG   A   ATGAGC T                 AG T         CCG             C      TAT   G T  AT  A    G       T A T T  C
blockSeqs                     :         .      .   T      .                 AG .         .               .      A     . .  .   .    .       . A . .  .
blockSeqs                     :         .      .   T      .                 AG .         .               .      T     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   T      .                 AG .         .               .      A     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   T      .                 AT .         .               .      A     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   T      .                 AG .         .               .      A     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   T      .                 AG .         .               .      A     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   T      .                 AA .         .               .      A     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   T      .                 AG .         .               .      G     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   T      .                 G  .         .               .      G     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   A      .                 .  .         .               .      C     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   .      .                 .  .         .               .      A     . .  .   .    .       . . . .  .
blockSeqs                     :         .      .   .      .                 .  .         .               .      A     . .  .   .    .       . . . .  .
blockSeqs                     :                                             .  .         .               .      T     . .  .   .    .       . . . .   
blockSeqs                     :                                             .  .         .               .      .     . .  .   .    .                 


blockSeqCons                  : 
originalCons                  : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
finalCons                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT





Alignments
lowQualScore                  :         6666   2   888888 2                 55 2         444             2      555   2 2  33  2    2       2 5 2 2  2        
lowQualScore                  :         ....   .   ...... .                 .. .         ...             .      ...   . .  ..  .    .       . . . .  .        
lowQualScore                  :         1111   9   111111 9                 11 5         444             5      888   5 5  44  5    5       7 3 7 7  9        
consensus                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
Reference ( family-984 )      : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112842                     : GACATGTC----TTA-GGA-----TG-ATCTTTGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-T-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112843                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATACTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCTTA-A-ATT-A-AG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112844                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTA-T-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112845                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGCTTAAGT-CATAAGACA---TGTTTTGGATTGA-GTCCTA-A-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATC
gi|112846                     : GACATGTC----TTAAGGA-----TG-GTCTTAGGACATGCCTAAGT-CATAAGACA---TGTTTTCGATTGA-GTCCTATATGTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-GA-TTCAATTT
gi|112847                     : GACATGTC----TTA-GGA-----TG-GTCTTAGGACATGTTTAATT-CATAAGACA---TGTTCTCGA-TGACGTCCTA-A-GTT-A-GG--AT-TCAT-CCTAAGA-T-A-A-GA-TTCAATCT
gi|112848                     : GGCATGTC----TTA-GGA-----TG-GTATTTGGCCATGCTTAAGC-CATAAGACA---TGTTTTCGATTGA-ATCCTA-A-ATT-A-GG--AT-TCAT-CCTAA
gi|112849                     : GGCATATC----TTA-GTA-----TG-GTCTTAGGGCATGCTTAAGT-CATAAAGCA---TGTTTTCTATTGA-GTTCTA-A-GTT-A-AG--AT-TCGT-CTTAAGA-T-A-A-GA-TTCGGTCT
gi|112850                     : GATATGTC----TTA-GGAATGAGCG-GTCTTAGGACATGTTT-------TA-GACA---TGTTTTCGATTGA-GTCCTA-A-GTT-A-GGATAT-TCGC-CCTCAGA-T-A-A-GA-TTCCATCT
gi|112851                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCCTA-G-ATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112852                     :  ACATGTC----TTA-TTA------G-GTCTTAG-ACATGCTTA--T-CATAAGACA---TGTTTTCGATTGA--TCCTA-G-ATT-A-GA--AT-TCAT--CTAAGA-TAA-A-GA-TTCAATCT
gi|112853                     :  ATATGTCCTAGTTA-GAG-----TG-GTCTTACGTCACCC-----------AGAAA---TGT---CGATTGA-GTCTTG-C-GTT-A-GG--AT-TCGT-CCTAAGA-T-A-A-AA-CTGAATC
gi|112854                     :   CGTGTC----T-A-GAA-----TG-GTCTTTGGGCATGTTTA-GT---------------TTTTTGATTGA-ATTCTA-A-GTTGA-GG--AGATCATGCCTAAGT-T-A-A-G
gi|112855                     :      GTT----TTA-GAA-----AGTGTCTTAGGAC-------------TACGACA---TGTTTTGGATCGA-GTCCTA-A-GTT-A-GG--AT-TTTT-CCTAAAA-T-A-A-GA-TTCAATCT
gi|112856                     :                                        GCGTGAAT-CATAAGACA---TGTTTTCGATTGA-G-------------------T-TCGT-CCTAAGA-T-ATATGA-TTCAATCT
gi|112857                     :                                            AAGTTCATAAGACACCGTATTGTCGATTGA-GTCCTA-T-GTT-ATGG--A--TCGT-CCTAAGATT-A-A-GACTCCGATCT