lowQualScore : 22222
lowQualScore : 4 3 2 55555 2 2 2 2 2 2 33 2 2 2
lowQualScore : . . . ..... . . . . . . .. . . .
lowQualScore : 0 3 9 11111 9 9 7 7 7 7 77 7 7 7
consensus : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( gi|128340 ) : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342 : ACTT-GA-GCAA-TCGACTGGTA-C---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341 : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343 : ACTT-GA-GCAA-TCGACTGGTA-----CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344 : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAA-GC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345 : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AA-GC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346 : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAG-AAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGA--------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349 : TT-GATGCTA-TCGACTGGTA-----CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350 : TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--A-GCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351 : A-GCAA-TCGACTGGCA-----CTG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352 : -GCAA-TC-ACTGGTA-C---CCG-A-AG-AA-GC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353 : A-TCGACTGGTA-----CCG-AGAG-AA-G--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354 : -TTGATTGGTA-C---TCG-AGAG-AA-GC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355 : -GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Alignments
lowQualScore : 11111
lowQualScore : 3 3 2 66666 2 5 2 2 2 33 2 2 2
lowQualScore : . . . ..... . . . . . .. . . .
lowQualScore : 6 1 7 33333 7 3 5 5 5 44 5 5 5
consensus : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( family-982 ) : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128340 : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341 : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342 : ACTT-GA-GCAA-TCGACTGGTACC---C-G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343 : ACTT-GA-GCAA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344 : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAAGC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345 : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AAGC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346 : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAGAAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGA-------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349 : TT-GATGCTA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350 : TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--AGCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351 : A-GCAA-TCGACTGGCACT-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352 : -GCAA-TC-ACTGGTACC---C-G-A-AG-AAGC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353 : A-TCGACTGGTACC-----G-AGAG-AAG--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354 : -TTGATTGGTACT---C-G-AGAG-AAGC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355 : GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Alignments
lowQualScore : 11111
lowQualScore : 3 3 2 66666 2 5 2 2 2 33 2 2 2
lowQualScore : . . . ..... . . . . . .. . . .
lowQualScore : 6 1 7 33333 7 3 5 5 5 44 5 5 5
consensus : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( family-982 ) : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128340 : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341 : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342 : ACTT-GA-GCAA-TCGACTGGTACC---C-G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343 : ACTT-GA-GCAA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344 : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAAGC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345 : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AAGC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346 : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAGAAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGA-------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349 : TT-GATGCTA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350 : TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--AGCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351 : A-GCAA-TCGACTGGCACT-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352 : -GCAA-TC-ACTGGTACC---C-G-A-AG-AAGC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353 : A-TCGACTGGTACC-----G-AGAG-AAG--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354 : -TTGATTGGTACT---C-G-AGAG-AAGC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355 : GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
blockSeqs : A T A TGGCC C A G C G AC C A C
blockSeqs : . . . CC . A . . . . . . .
blockSeqs : . . . CC . . . . . . . . .
blockSeqs : . . . CC . . . . . . . . .
blockSeqs : . . . CC . . . . . . . . .
blockSeqs : . . . CC . . . . . . . . .
blockSeqs : . . . CG . . . . . . . . .
blockSeqs : . . . C . . . . . . . . .
blockSeqs : . . . C . . . . . . . . .
blockSeqs : . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
finalCons : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Alignments
lowQualScore : 11111
lowQualScore : 3 3 2 66666 2 5 2 2 2 33 2 2 2
lowQualScore : . . . ..... . . . . . .. . . .
lowQualScore : 6 1 7 33333 7 3 5 5 5 44 5 5 5
consensus : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( family-982 ) : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128340 : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341 : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342 : ACTT-GA-GCAA-TCGACTGGTACC---C-G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343 : ACTT-GA-GCAA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344 : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAAGC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345 : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AAGC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346 : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAGAAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348 : TT-GA-GCAA-TCGACTGGTACC---CCG-AGA-------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349 : TT-GATGCTA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350 : TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--AGCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351 : A-GCAA-TCGACTGGCACT-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352 : -GCAA-TC-ACTGGTACC---C-G-A-AG-AAGC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353 : A-TCGACTGGTACC-----G-AGAG-AAG--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354 : -TTGATTGGTACT---C-G-AGAG-AAGC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355 : GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA