lowQualScore                  :                        22222                                               
lowQualScore                  :     4  3    2          55555   2    2  2  2     2    2 33    2  2 2        
lowQualScore                  :     .  .    .          .....   .    .  .  .     .    . ..    .  . .        
lowQualScore                  :     0  3    9          11111   9    9  7  7     7    7 77    7  7 7        
consensus                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( gi|128340 )       : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342                     : ACTT-GA-GCAA-TCGACTGGTA-C---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341                     : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343                     : ACTT-GA-GCAA-TCGACTGGTA-----CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAA-GC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345                     : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AA-GC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346                     : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAG-AAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGA--------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349                     :   TT-GATGCTA-TCGACTGGTA-----CCG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350                     :   TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--A-GCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351                     :       A-GCAA-TCGACTGGCA-----CTG-AGAG-AA-GC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352                     :        -GCAA-TC-ACTGGTA-C---CCG-A-AG-AA-GC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353                     :            A-TCGACTGGTA-----CCG-AGAG-AA-G--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354                     :             -TTGATTGGTA-C---TCG-AGAG-AA-GC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355                     :                                        -GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA





Alignments
lowQualScore                  :                          11111                                            
lowQualScore                  :     3  3    2            66666 2    5    2     2    2 33    2  2 2        
lowQualScore                  :     .  .    .            ..... .    .    .     .    . ..    .  . .        
lowQualScore                  :     6  1    7            33333 7    3    5     5    5 44    5  5 5        
consensus                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( family-982 )      : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128340                     : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341                     : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342                     : ACTT-GA-GCAA-TCGACTGGTACC---C-G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343                     : ACTT-GA-GCAA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAAGC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345                     : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AAGC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346                     : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAGAAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGA-------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349                     :   TT-GATGCTA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350                     :   TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--AGCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351                     :       A-GCAA-TCGACTGGCACT-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352                     :        -GCAA-TC-ACTGGTACC---C-G-A-AG-AAGC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353                     :            A-TCGACTGGTACC-----G-AGAG-AAG--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354                     :             -TTGATTGGTACT---C-G-AGAG-AAGC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355                     :                                        GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA





Alignments
lowQualScore                  :                          11111                                            
lowQualScore                  :     3  3    2            66666 2    5    2     2    2 33    2  2 2        
lowQualScore                  :     .  .    .            ..... .    .    .     .    . ..    .  . .        
lowQualScore                  :     6  1    7            33333 7    3    5     5    5 44    5  5 5        
consensus                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( family-982 )      : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128340                     : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341                     : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342                     : ACTT-GA-GCAA-TCGACTGGTACC---C-G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343                     : ACTT-GA-GCAA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAAGC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345                     : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AAGC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346                     : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAGAAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGA-------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349                     :   TT-GATGCTA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350                     :   TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--AGCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351                     :       A-GCAA-TCGACTGGCACT-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352                     :        -GCAA-TC-ACTGGTACC---C-G-A-AG-AAGC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353                     :            A-TCGACTGGTACC-----G-AGAG-AAG--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354                     :             -TTGATTGGTACT---C-G-AGAG-AAGC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355                     :                                        GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA


blockSeqs                     :     A  T    A            TGGCC C    A    G     C    G AC    C  A C
blockSeqs                     :     .  .    .            CC    .    A    .     .    . .     .  . .
blockSeqs                     :     .  .    .            CC    .    .    .     .    . .     .  . .
blockSeqs                     :     .  .    .            CC    .    .    .     .    . .     .  . .
blockSeqs                     :     .  .    .            CC    .    .    .     .    . .     .  . .
blockSeqs                     :     .  .    .            CC    .    .    .     .    . .     .  . .
blockSeqs                     :     .  .    .            CG    .    .    .     .    . .     .  . .
blockSeqs                     :     .  .    .            C     .    .    .     .    . .     .  . .
blockSeqs                     :     .  .    .            C     .    .    .     .    . .     .  . .
blockSeqs                     :     .  .    .            C     .    .    .     .    . .     .  . .
blockSeqs                     :        .    .            .     .    .    .     .    . .     .  . .
blockSeqs                     :        .    .            .     .    .    .     .    . .     .  . .
blockSeqs                     :             .            .     .    .    .     .    . .     .  . .
blockSeqs                     :             .            .     .    .    .     .    . .     .  . .
blockSeqs                     :                                          .     .    . .     .  . .


blockSeqCons                  : 
originalCons                  : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
finalCons                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA





Alignments
lowQualScore                  :                          11111                                            
lowQualScore                  :     3  3    2            66666 2    5    2     2    2 33    2  2 2        
lowQualScore                  :     .  .    .            ..... .    .    .     .    . ..    .  . .        
lowQualScore                  :     6  1    7            33333 7    3    5     5    5 44    5  5 5        
consensus                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
Reference ( family-982 )      : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128340                     : ACTT-GA-GCAA-TCGACTGGTATC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128341                     : ACTT-GA-GCAA-TCGACTGGTTCC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128342                     : ACTT-GA-GCAA-TCGACTGGTACC---C-G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128343                     : ACTT-GA-GCAA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128344                     : ACTT-GA-GCAA-TCGACTGGTACC---CCG-AGAGAAAGC-GATAG-CACA-A--CAGG-GT-A-CC-GTTTA
gi|128345                     : ACTT-GA-GCAAATCG-CTGGTACCTGGCCGCAGAG-AAGC-GATAG-CACA-A--CAGGCGT-A-CCAGTTTA
gi|128346                     : ACTTAGA-GCAA-TCGAT--GTACC---CCG-AGAGAAAGC-GATAG-CACA-AACCAGG-GTAA-CCAGTT
gi|128347                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128348                     :   TT-GA-GCAA-TCGACTGGTACC---CCG-AGA-------GATAG-CACA-A--CAGG-GT-A-CCAGTTTA
gi|128349                     :   TT-GATGCTA-TCGACTGGTACC-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAATTTA
gi|128350                     :   TT-GA-GCAA-TC-ACTGGTACC---CGG-AGAG--AGCGGATAGCCACA-A--CGAG-GT-ACCCAGTTT
gi|128351                     :       A-GCAA-TCGACTGGCACT-----G-AGAG-AAGC-GATAG-CACA-A--CAGG-GT-A-CCAGTT
gi|128352                     :        -GCAA-TC-ACTGGTACC---C-G-A-AG-AAGC-GATAG-CACA-A---AGG-GT-A-TCAGTTTA
gi|128353                     :            A-TCGACTGGTACC-----G-AGAG-AAG--GA-AG-CACAGA--CAGG-GT-A-CCAGTTTA
gi|128354                     :             -TTGATTGGTACT---C-G-AGAG-AAGC-GAGAG-C-CA-A--CAGG-AT-A-CCAGTTTA
gi|128355                     :                                        GC-GATAG-CACA-A--CAGG-GT-A-CCAGTTTA