lowQualScore : 1 1
lowQualScore : 555 2 2 888888 9 33 3 5 7777 0 2 3 5
lowQualScore : ... . . ...... . .. . . .... . . . .
lowQualScore : 444 9 9 222222 9 99 1 7 5555 1 9 3 0
consensus : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCTGGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
Reference ( gi|132242 ) : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCTGGAGAA--A-GATACAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-TTTATCATTA
gi|132244 : TCTTTCTG---TTCCCCAAAATTA-A-ATTCCACGTA------TCTGAAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTCATCAGTA
gi|132245 : TCTTTCTG---TTTCCCAAACTAA-A-ATTCCACCTA------TCTGGAAAA--A-GATACAAATC-AC-G--AAACGGCCTTAGGTCTGC-AG-TTTATCAGTA
gi|132247 : TCTTTATG---TTTCCCAAACTTA-A-ATCCCACCTA------TCTGGGAAA--A-GATACAAATC-AC-G--AAATGGCCCTAGGTCTGC-AA-TTTAT
gi|132246 : TCTTTCTG---TTCAACAAACTTA-A-ATTCCACCAA------TCTGGAAAA--A-GATACAAATC-AC-G--AAACGCC-CTAGATCTGC-AA-TTTATCAGTAaagt
gi|132243 : TCTTTCTGATATTCCCCAA-CTTA-A-ATTCCACCTA------TCTGGAGAATCA-GATAC-AATCGACGG--AAATGCCTTTGGGTCTGC-AATTTTATCA
gi|132248 : TCTTTCTG---TTCCCCAAAACTA-ATATTCCGCCTA------TCTTGAAAA--A-GACACAAATC-AC-G--AATTACC-TTGGGACGGC-AC-TTT
gi|132249 : TTTTTCTG---ATCC--------A-A-ATTTCACCGA------TCTGGA-AA--A-GATACGAATC-AA-T--AAGTGCCCTTCGGTCTGT-A
gi|132250 : TTTTTCTG---TCCCCCAAACGTA-A-ATTCCACCTA------TCTGGAAAA--
gi|132251 : CTCTCTG---TTCCCTAAACTTA-A-ATTCTACCTA------TCTGGA-AA--A-GATGCAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-GTTATCAGTA
gi|132252 : TTTTTG---AACCCTAAATTCA-A-ATTCTACCTA------TCTAGAAAA--A-GACACAAATC-CC-C--AAATGCTCTTGGGTCTGC-AG-TTTATCAGTA
gi|132253 : TTCTG---TTCCCCAAACTTA-A-A-TCCACCTA------TCTT--GAA--A-AATACAGATC-AT-GGAAGATGCC-TTGGGTTTGCAAA-TTGATCA
gi|132254 : TTCTG---TTTCTCAAACTCAGA-AT--CATCCA------TTTTGGGA-----GATGCAATTCTAC----AAATGCCTTTGGATCTGC-
gi|132255 : TG---TTCCCCAAACTTA-A-ATTCCACCTA------TCTGGA-AA--A-GATACAAATC-AA-T--AAATGCCCTTGGGTCTGC-AA-Ttgtgtatgagta
gi|132256 : CTTA-A-ATTCCACCTACATGTATCTGGAAAA--AAGATGCAAATC-AC-C--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
gi|132257 : ATACAAATC-GC-G--AAATGCCCTTGGGTCTGC-AA-T
Alignments
lowQualScore : 555 2 2 777777 2 9999 5 6666 2 2
lowQualScore : ... . . ...... . .... . .... . .
lowQualScore : 000 7 7 777777 7 7777 3 3333 7 9
consensus : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
Reference ( family-981 ) : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
gi|132242 : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAGAA--A-GATACAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-TTTATCATTA
gi|132243 : TCTTTCTGATATTCCCCAA-CTTA-A-ATTCCACCTA------TCT-GGAGAATCA-GATAC-AATCGACGG--AAATGCCTTTGGGTCTGC-AATTTTATCA
gi|132244 : TCTTTCTG---TTCCCCAAAATTA-A-ATTCCACGTA------TCT-GAAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTCATCAGTA
gi|132245 : TCTTTCTG---TTTCCCAAACTAA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAACGGCCTTAGGTCTGC-AG-TTTATCAGTA
gi|132246 : TCTTTCTG---TTCAACAAACTTA-A-ATTCCACCAA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAACGCCC-TAGATCTGC-AA-TTTATCAGTA
gi|132247 : TCTTTATG---TTTCCCAAACTTA-A-ATCCCACCTA------TCT-GGGAAA--A-GATACAAATC-AC-G--AAATGGCCCTAGGTCTGC-AA-TTTATAAGT
gi|132248 : TCTTTCTG---TTCCCCAAAACTA-ATATTCCGCCTA------TCT-TGAAAA--A-GACACAAATC-AC-G--AATTA-CCTTGGGACGGC-AC-TTT
gi|132249 : TTTTTCTG---ATCC--------A-A-ATTTCACCGA------TCT-GGAAAA----GATACGAATC-AA-T--AAGTGCCCTTCGGTCTGT-A
gi|132250 : TTTTTCTG---TCCCCCAAACGTA-A-ATTCCACCTA------TCT-GGAAAA--
gi|132251 : CTCTCTG---TTCCCTAAACTTA-A-ATTCTACCTA------TCT-GGAAAA----GATGCAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-GTTATCAGTA
gi|132252 : TTTTTG---AACCCTAAATTCA-A-ATTCTACCTA------TCT-AGAAAA--A-GACACAAATC-CC-C--AAATGCTCTTGGGTCTGC-AG-TTTATCAGTA
gi|132253 : TTCTG---TTCCCCAAACTTA-A-A-TCCACCTA------TCT-TGAAAA-----ATACAGATC-AT-GGAAGATG-CCTTGGGTTTGCAAA-TTGATCA
gi|132254 : TTCTG---TTTCTCAAACTCAGA-AT--CATCCA------TTTTGGGA------GATGCAATTCTAC----AAATGCCTTTGGATCTGC-TG-TGTATGAGTA
gi|132255 : TG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GG-AAA--A-GATACAAATC-AA-T--AAATGCCCTTGGGTCTGC-AA-
gi|132256 : CTTA-A-ATTCCACCTACATGTATCT-GGAAAA--AAGATGCAAATC-AC-C--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
gi|132257 : ATACAAATC-GC-G--AAATGCCCTTGGGTCTGC-AA-
Alignments
lowQualScore : 555 2 2 777777 2 9999 5 6666 2 2
lowQualScore : ... . . ...... . .... . .... . .
lowQualScore : 000 7 7 777777 7 7777 3 3333 7 9
consensus : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
Reference ( family-981 ) : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
gi|132242 : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAGAA--A-GATACAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-TTTATCATTA
gi|132243 : TCTTTCTGATATTCCCCAA-CTTA-A-ATTCCACCTA------TCT-GGAGAATCA-GATAC-AATCGACGG--AAATGCCTTTGGGTCTGC-AATTTTATCA
gi|132244 : TCTTTCTG---TTCCCCAAAATTA-A-ATTCCACGTA------TCT-GAAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTCATCAGTA
gi|132245 : TCTTTCTG---TTTCCCAAACTAA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAACGGCCTTAGGTCTGC-AG-TTTATCAGTA
gi|132246 : TCTTTCTG---TTCAACAAACTTA-A-ATTCCACCAA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAACGCCC-TAGATCTGC-AA-TTTATCAGTA
gi|132247 : TCTTTATG---TTTCCCAAACTTA-A-ATCCCACCTA------TCT-GGGAAA--A-GATACAAATC-AC-G--AAATGGCCCTAGGTCTGC-AA-TTTATAAGT
gi|132248 : TCTTTCTG---TTCCCCAAAACTA-ATATTCCGCCTA------TCT-TGAAAA--A-GACACAAATC-AC-G--AATTA-CCTTGGGACGGC-AC-TTT
gi|132249 : TTTTTCTG---ATCC--------A-A-ATTTCACCGA------TCT-GGAAAA----GATACGAATC-AA-T--AAGTGCCCTTCGGTCTGT-A
gi|132250 : TTTTTCTG---TCCCCCAAACGTA-A-ATTCCACCTA------TCT-GGAAAA--
gi|132251 : CTCTCTG---TTCCCTAAACTTA-A-ATTCTACCTA------TCT-GGAAAA----GATGCAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-GTTATCAGTA
gi|132252 : TTTTTG---AACCCTAAATTCA-A-ATTCTACCTA------TCT-AGAAAA--A-GACACAAATC-CC-C--AAATGCTCTTGGGTCTGC-AG-TTTATCAGTA
gi|132253 : TTCTG---TTCCCCAAACTTA-A-A-TCCACCTA------TCT-TGAAAA-----ATACAGATC-AT-GGAAGATG-CCTTGGGTTTGCAAA-TTGATCA
gi|132254 : TTCTG---TTTCTCAAACTCAGA-AT--CATCCA------TTTTGGGA------GATGCAATTCTAC----AAATGCCTTTGGATCTGC-TG-TGTATGAGTA
gi|132255 : TG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GG-AAA--A-GATACAAATC-AA-T--AAATGCCCTTGGGTCTGC-AA-
gi|132256 : CTTA-A-ATTCCACCTACATGTATCT-GGAAAA--AAGATGCAAATC-AC-C--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
gi|132257 : ATACAAATC-GC-G--AAATGCCCTTGGGTCTGC-AA-
blockSeqs : ATA G T CATGTA T TCA G GGA A T
blockSeqs : . . . . . AA T GG . .
blockSeqs : . . . . . A . G . .
blockSeqs : . . . . . A . G . .
blockSeqs : . . . . . A . G . .
blockSeqs : . . . . . A . G . .
blockSeqs : . . . . . A . G . .
blockSeqs : . . . . . A . T . .
blockSeqs : . . . . . A . G . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . C . .
blockSeqs : . . . . . . . G . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
finalCons : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
Alignments
lowQualScore : 555 2 2 777777 2 9999 5 6666 2 2
lowQualScore : ... . . ...... . .... . .... . .
lowQualScore : 000 7 7 777777 7 7777 3 3333 7 9
consensus : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
Reference ( family-981 ) : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
gi|132242 : TCTTTCTG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GGAGAA--A-GATACAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-TTTATCATTA
gi|132243 : TCTTTCTGATATTCCCCAA-CTTA-A-ATTCCACCTA------TCT-GGAGAATCA-GATAC-AATCGACGG--AAATGCCTTTGGGTCTGC-AATTTTATCA
gi|132244 : TCTTTCTG---TTCCCCAAAATTA-A-ATTCCACGTA------TCT-GAAAAA--A-GATACAAATC-AC-G--AAATGCCCTTGGGTCTGC-AA-TTCATCAGTA
gi|132245 : TCTTTCTG---TTTCCCAAACTAA-A-ATTCCACCTA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAACGGCCTTAGGTCTGC-AG-TTTATCAGTA
gi|132246 : TCTTTCTG---TTCAACAAACTTA-A-ATTCCACCAA------TCT-GGAAAA--A-GATACAAATC-AC-G--AAACGCCC-TAGATCTGC-AA-TTTATCAGTA
gi|132247 : TCTTTATG---TTTCCCAAACTTA-A-ATCCCACCTA------TCT-GGGAAA--A-GATACAAATC-AC-G--AAATGGCCCTAGGTCTGC-AA-TTTATAAGT
gi|132248 : TCTTTCTG---TTCCCCAAAACTA-ATATTCCGCCTA------TCT-TGAAAA--A-GACACAAATC-AC-G--AATTA-CCTTGGGACGGC-AC-TTT
gi|132249 : TTTTTCTG---ATCC--------A-A-ATTTCACCGA------TCT-GGAAAA----GATACGAATC-AA-T--AAGTGCCCTTCGGTCTGT-A
gi|132250 : TTTTTCTG---TCCCCCAAACGTA-A-ATTCCACCTA------TCT-GGAAAA--
gi|132251 : CTCTCTG---TTCCCTAAACTTA-A-ATTCTACCTA------TCT-GGAAAA----GATGCAAATC-AC-G--AAATGCCTTTGGGTCTGC-AA-GTTATCAGTA
gi|132252 : TTTTTG---AACCCTAAATTCA-A-ATTCTACCTA------TCT-AGAAAA--A-GACACAAATC-CC-C--AAATGCTCTTGGGTCTGC-AG-TTTATCAGTA
gi|132253 : TTCTG---TTCCCCAAACTTA-A-A-TCCACCTA------TCT-TGAAAA-----ATACAGATC-AT-GGAAGATG-CCTTGGGTTTGCAAA-TTGATCA
gi|132254 : TTCTG---TTTCTCAAACTCAGA-AT--CATCCA------TTTTGGGA------GATGCAATTCTAC----AAATGCCTTTGGATCTGC-TG-TGTATGAGTA
gi|132255 : TG---TTCCCCAAACTTA-A-ATTCCACCTA------TCT-GG-AAA--A-GATACAAATC-AA-T--AAATGCCCTTGGGTCTGC-AA-
gi|132256 : CTTA-A-ATTCCACCTACATGTATCT-GGAAAA--AAGATGCAAATC-AC-C--AAATGCCCTTGGGTCTGC-AA-TTTATCAGTA
gi|132257 : ATACAAATC-GC-G--AAATGCCCTTGGGTCTGC-AA-