lowQualScore : 11 1 1 111111 11
lowQualScore : 3 33 2 4 5 6 2 0 1 2 666666 2 00 2 0 2
lowQualScore : . .. . . . . . . . . ...... . .. . . .
lowQualScore : 1 77 7 0 3 6 7 7 5 9 444444 9 77 9 1 9
consensus : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TTGCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
Reference ( gi|3268 ) : TAGAATAAA-ACGAATAAAACGGCAT-GTG-TTGCGATTATTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3272 : TAGAATAAA-ACGAATAAAACAGCAT-GTGTTTGCGGTTTTTT-AG-CAATTCTTTT-G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3269 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TTGC-ATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3273 : TAGAATAAA-ACGAATAAAACAGCAT-GTGTTTGCGGTTTTTT-AG-CAATTCTTT--G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3274 : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TTACAATTTTTT-AA-AAATTCTTTTCA-AA------TACCTT-TG--CTTT-TAAT-TTAATTTTT
gi|3276 : TAGAATAAA-ACGAATAAA-CAGCAT-GCG-T-GCGATTTTTT-AAACAATTCTTT-CG-AA------TACCTT-CGT-TTTT-TAAT-TTAGTTTCT
gi|3270 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TTGCAATTTTTTAAA-CAATTCTTTTCG--A------TACCTT-CG--TTTT-T-AT-TTAGTTTTT
gi|3277 : TAGAATAAA-ACGAATAAAAGAGCATAGCG-TTGCGATTTTTT-AAACAAT-CTTTTCG-A-------TACCTT-CG--TTTTGTTAT-TTAGTTTTT
gi|3271 : TAGAATAAATACGAATAAAAGAGCAT-GCG-TTGCAATTTTTT-AAACAATTCTTT-CG-AA------TACCTT-CG--TTGT-TTATATTAGTTTT
gi|3278 : TAGAATAAA-ACGAATAAAATAGCAT-GCG-TTGCGA---------------CTTTTCG-AA------TACCTT-AG--TTTT-TTAT-TTAGTTTTT
gi|3275 : TAGAATAAA-ACGAATGAAAGAGCAT-GCG-TTG-GAGTTTTT-AACCAATTC--TTCGAAA------TACCTTCCG--CTTT-TAAT-TTAGTTTT
gi|3280 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TTGCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3279 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TTGCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3281 : TAGAATAAA-GCGAATATAACAGCAT-GCA-TTGCGATTTTTT-AA-CAATTCTTT
gi|3283 : GAATAAAAGCGCAT-GCG-TTGCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT
gi|3282 : GAATAAAAGCGCAT-GCG-TTGCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT
Alignments
lowQualScore : 1 111111 11
lowQualScore : 2 4 2 2 2 0 2 0 2 555555 2 00 2 2
lowQualScore : . . . . . . . . . ...... . .. . .
lowQualScore : 9 1 5 5 5 0 5 2 7 333333 7 00 7 7
consensus : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
Reference ( family-980 ) : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3268 : TAGAATAAA-ACGAATAAAACGGCAT-GTG-TT-GCGATTATTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3269 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TT-GC-ATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3270 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TT-GCAATTTTTTAAA-CAATTCTTTTCG--A------TACCTT-CG--TTTT-T-AT-TTAGTTTTT
gi|3271 : TAGAATAAATACGAATAAAAGAGCAT-GCG-TT-GCAATTTTTTAAA-CAATTC-TTTCG-AA------TACCTT-CG--TTGT-TTATATTAGTTTT
gi|3272 : TAGAATAAA-ACGAATAAAACAGCAT-GTGTTT-GCGGTTTTTT-AG-CAATTCTTTT-G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3273 : TAGAATAAA-ACGAATAAAACAGCAT-GTG-TTTGCGGTTTTTT-AG-CAATTCTTT--G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3274 : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-ACAATTTTTT-AA-AAATTCTTTTCA-AA------TACCTT-TG--CTTT-TAAT-TTAATTTTT
gi|3275 : TAGAATAAA-ACGAATGAAAGAGCAT-GCG-TT-G-GAGTTTTT-AACCAATTC--TTCGAAA------TACCTTCCG--CTTT-TAAT-TTAGTTTT
gi|3276 : TAGAATAAA-ACGAATAAAC-AGCAT-GCG-T--GCGATTTTTTAAA-CAATTC-TTTCG-AA------TACCTT-CGT-TTTT-TAAT-TTAGTTTCT
gi|3277 : TAGAATAAA-ACGAATAAAAGAGCATAGCG-TT-GCGATTTTTTAAA-CAA-TCTTTTCG--A------TACCTT-CG--TTTTGTTAT-TTAGTTTTT
gi|3278 : TAGAATAAA-ACGAATAAAATAGCAT-GCG-TT-GCGA---------------CTTTTCG-AA------TACCTT-AG--TTTT-TTAT-TTAGTTTTT
gi|3279 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TT-GCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3280 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TT-GCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3281 : TAGAATAAA-GCGAATATAACAGCAT-GCA-TT-GCGATTTTTT-AA-CAATTCTTT
gi|3282 : GAATAAAAGCGCAT-GCG-TT-GCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT
gi|3283 : GAATAAAAGCGCAT-GCG-TT-GCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT
Alignments
lowQualScore : 1 111111 11
lowQualScore : 2 4 2 2 2 0 2 0 2 555555 2 00 2 2
lowQualScore : . . . . . . . . . ...... . .. . .
lowQualScore : 9 1 5 5 5 0 5 2 7 333333 7 00 7 7
consensus : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
Reference ( family-980 ) : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3268 : TAGAATAAA-ACGAATAAAACGGCAT-GTG-TT-GCGATTATTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3269 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TT-GC-ATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3270 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TT-GCAATTTTTTAAA-CAATTCTTTTCG--A------TACCTT-CG--TTTT-T-AT-TTAGTTTTT
gi|3271 : TAGAATAAATACGAATAAAAGAGCAT-GCG-TT-GCAATTTTTTAAA-CAATTC-TTTCG-AA------TACCTT-CG--TTGT-TTATATTAGTTTT
gi|3272 : TAGAATAAA-ACGAATAAAACAGCAT-GTGTTT-GCGGTTTTTT-AG-CAATTCTTTT-G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3273 : TAGAATAAA-ACGAATAAAACAGCAT-GTG-TTTGCGGTTTTTT-AG-CAATTCTTT--G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3274 : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-ACAATTTTTT-AA-AAATTCTTTTCA-AA------TACCTT-TG--CTTT-TAAT-TTAATTTTT
gi|3275 : TAGAATAAA-ACGAATGAAAGAGCAT-GCG-TT-G-GAGTTTTT-AACCAATTC--TTCGAAA------TACCTTCCG--CTTT-TAAT-TTAGTTTT
gi|3276 : TAGAATAAA-ACGAATAAAC-AGCAT-GCG-T--GCGATTTTTTAAA-CAATTC-TTTCG-AA------TACCTT-CGT-TTTT-TAAT-TTAGTTTCT
gi|3277 : TAGAATAAA-ACGAATAAAAGAGCATAGCG-TT-GCGATTTTTTAAA-CAA-TCTTTTCG--A------TACCTT-CG--TTTTGTTAT-TTAGTTTTT
gi|3278 : TAGAATAAA-ACGAATAAAATAGCAT-GCG-TT-GCGA---------------CTTTTCG-AA------TACCTT-AG--TTTT-TTAT-TTAGTTTTT
gi|3279 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TT-GCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3280 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TT-GCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3281 : TAGAATAAA-GCGAATATAACAGCAT-GCA-TT-GCGATTTTTT-AA-CAATTCTTT
gi|3282 : GAATAAAAGCGCAT-GCG-TT-GCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT
gi|3283 : GAATAAAAGCGCAT-GCG-TT-GCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT
blockSeqs : T G A T T A C A AACATG C TT G A
blockSeqs : . G . . . A . . AACATG . TT . .
blockSeqs : . G . . . A . . . . T . .
blockSeqs : . C . . . A . . . . . . .
blockSeqs : . C . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . .
blockSeqs : . T . . . . . . . . . . .
blockSeqs : . C . . . . . . . . . . .
blockSeqs : . G . . . . . . . . . . .
blockSeqs : G . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
finalCons : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
Alignments
lowQualScore : 1 111111 11
lowQualScore : 2 4 2 2 2 0 2 0 2 555555 2 00 2 2
lowQualScore : . . . . . . . . . ...... . .. . .
lowQualScore : 9 1 5 5 5 0 5 2 7 333333 7 00 7 7
consensus : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
Reference ( family-980 ) : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-GCGATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3268 : TAGAATAAA-ACGAATAAAACGGCAT-GTG-TT-GCGATTATTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3269 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TT-GC-ATTTTTT-AA-CAATTCTTTTCG-AA------TACCTT-CG--TTTT-TAAT-TTAGTTTTT
gi|3270 : TAGAATAAA--CGAATAAAAGAGCAT-GCG-TT-GCAATTTTTTAAA-CAATTCTTTTCG--A------TACCTT-CG--TTTT-T-AT-TTAGTTTTT
gi|3271 : TAGAATAAATACGAATAAAAGAGCAT-GCG-TT-GCAATTTTTTAAA-CAATTC-TTTCG-AA------TACCTT-CG--TTGT-TTATATTAGTTTT
gi|3272 : TAGAATAAA-ACGAATAAAACAGCAT-GTGTTT-GCGGTTTTTT-AG-CAATTCTTTT-G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3273 : TAGAATAAA-ACGAATAAAACAGCAT-GTG-TTTGCGGTTTTTT-AG-CAATTCTTT--G-AA------TACCTT-CG--TTTT-TAAT-TTAATTTTT
gi|3274 : TAGAATAAA-ACGAATAAAAGAGCAT-GCG-TT-ACAATTTTTT-AA-AAATTCTTTTCA-AA------TACCTT-TG--CTTT-TAAT-TTAATTTTT
gi|3275 : TAGAATAAA-ACGAATGAAAGAGCAT-GCG-TT-G-GAGTTTTT-AACCAATTC--TTCGAAA------TACCTTCCG--CTTT-TAAT-TTAGTTTT
gi|3276 : TAGAATAAA-ACGAATAAAC-AGCAT-GCG-T--GCGATTTTTTAAA-CAATTC-TTTCG-AA------TACCTT-CGT-TTTT-TAAT-TTAGTTTCT
gi|3277 : TAGAATAAA-ACGAATAAAAGAGCATAGCG-TT-GCGATTTTTTAAA-CAA-TCTTTTCG--A------TACCTT-CG--TTTTGTTAT-TTAGTTTTT
gi|3278 : TAGAATAAA-ACGAATAAAATAGCAT-GCG-TT-GCGA---------------CTTTTCG-AA------TACCTT-AG--TTTT-TTAT-TTAGTTTTT
gi|3279 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TT-GCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3280 : TAGAATAAA-ACGAATAAAATAGTCT-GCG-TT-GCG-----------CA---CTTTTCG-AA------TACCTT-AGTTTTTT-TATT-TTAGTTTTT
gi|3281 : TAGAATAAA-GCGAATATAACAGCAT-GCA-TT-GCGATTTTTT-AA-CAATTCTTT
gi|3282 : GAATAAAAGCGCAT-GCG-TT-GCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT
gi|3283 : GAATAAAAGCGCAT-GCG-TT-GCGATTTTTT-AA-GAATTCTTCTCG-AAAACATGTACTTT-CA--TTTT-GAAT-GTAGTTTTT