lowQualScore : 1111111111111 555555555555555 1 1 1
lowQualScore : 2 2 8 5 4444444444444 444 000000000000000 2 0 2 66 0 2 6 2 0 6
lowQualScore : . . . . ............. ... ............... . . . .. . . . . . .
lowQualScore : 7 7 1 3 7777777777777 777 000000000000000 7 7 7 33 7 7 7 7 6 9
consensus : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
Reference ( gi|121138 ) : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAT-A-TATTGGCT-AAACCCAAATAGTAACACTATAAATTT
gi|121139 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAA---A-CATTGGCT-AAACCAAAATAGTCACACTATAAATTT
gi|121143 : ATTGGCTTTCGAGCGCCGAGC-TTTATATGCCCTTTTTGTCACGT-------------GA---CC---------------A-C-A-TT--CGAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATAAATTT
gi|121140 : ATTGACTTCAGAGCGC-GGTA-TTTTCATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-CATTGGCT-AAACCCAAATGGTCACACTATAACTTT
gi|121142 : ATTGACTTCGGAGTGC-GGGC-TTTTTATACCCTTTT-ATAACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAATACAAATGGTCACACTATAAATTT
gi|121144 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------AGA-A-TC--CGAAAC-A-AATTGGCT-TAACCCAAAT
gi|121141 : ACTAACTTCAGAGCGC-GGGA-TTTTTATACCCTTTT-GTCATGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAACCAAAATGGTCAC
gi|121145 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGTATTATAAATTT
gi|121147 : ATTGGCTTCCGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TC---------------A-T-A-ACA-CGGAACAA-TGTT--CT-GAACCCAAATGGTCGCATTGTAAATTT
gi|121146 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGTACATCATAACACGGATGTTT---------------A-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATTT
gi|121148 : ACTGGCTTCCGAGCGC-GAGC-TTTTTACACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAACAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATT
gi|121149 : TTGACTTCAGAGCGC-GAGC-TTTATATACCTTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CAAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATACATTT
gi|121150 : TTGACTTCAGAGCAC-GGGC-TTTATATACCCTTTTTGTCACGT-------------GA---CC---------------G-C-A-TT--CGAAAT-A-TATTGGCT-AAACACAAATAGTCACACTATAAATTT
gi|121151 : TTGACTTCAGAG-AC-GG-C-TTTATATACCTTTTT-GTCACGT--------------A---CC---------------G-C-A-TCTGCGAAAT-A--ATTGGCTAAAACACAAATAGT-ACACTA-AAATT
gi|121152 : CGC-GGGCATTTTTATTCCCTTTT-ATCACGT-------------GA---CC---------------A-C-AATC--CGAATT-A-CATTGGCT-AAACCCAAATGGTCACACTATAAATTT
gi|121153 : GC-GAGC-TTT-TATACCCTTTT-ATCACGT-------------GA---TCCTGACACAGATGTTTA-C-A-TC--TGAAAT-AATATT--CT-GAACCCAAATGGTTGCATTATAAATTT
Alignments
lowQualScore : 1111111111111 444444444444444 1 1
lowQualScore : 2 2 3 5 3333333333333 444 666666666666666 2 0 2 55 0 2 5 2 0
lowQualScore : . . . . ............. ... ............... . . . .. . . . . .
lowQualScore : 5 5 4 0 8888888888888 444 999999999999999 5 0 5 99 0 5 6 5 7
consensus : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
Reference ( family-975 ) : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
gi|121138 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAT-A-TATTGGCT-AAACCCAAATAGTAACACTATAAATTT
gi|121139 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAAAC----ATTGGCT-AAACCAAAATAGTCACACTATAAATTT
gi|121140 : ATTGACTTCAGAGCGC-GGTA-TTTTCATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-CATTGGCT-AAACCCAAATGGTCACACTATAACTTT
gi|121141 : ACTAACTTCAGAGCGC-GGGA-TTTTTATACCCTTTT-GTCATGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAACCAAAATGGTCAC
gi|121142 : ATTGACTTCGGAGTGC-GGGC-TTTTTATACCCTTTT-ATAACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAATACAAATGGTCACACTATAAATTT
gi|121143 : ATTGGCTTTCGAGCGCCGAGC-TTTATATGCCCTTTTTGTCACGT-------------GA---CC---------------A-C-A-TT--CGAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATAAATTT
gi|121144 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------AGA-A-TC--CGAAAC-A-AATTGGCT-TAACCCAAAT
gi|121145 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGTATTATAAATTT
gi|121146 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGTACATCATAACACGGATGTTT---------------A-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATTT
gi|121147 : ATTGGCTTCCGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TC---------------A-T-A-ACA-CGGAACAA-TGTT--CT-GAACCCAAATGGTCGCATTGTAAATTT
gi|121148 : ACTGGCTTCCGAGCGC-GAGC-TTTTTACACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAACAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATT
gi|121149 : TTGACTTCAGAGCGC-GAGC-TTTATATACCTTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CAAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATACATTT
gi|121150 : TTGACTTCAGAGCAC-GGGC-TTTATATACCCTTTTTGTCACGT-------------GA---CC---------------G-C-A-TT--CGAAAT-A-TATTGGCT-AAACACAAATAGTCACACTATAAATTT
gi|121151 : TTGACTTCAGAG-AC-GG-C-TTTATATACCTTTTT-GTCACGT--------------A---CC---------------G-C-A-TCTGCGAAAT-A--ATTGGCTAAAACACAAATAGT-ACACTA-AAATT
gi|121152 : CGC-GGGCATTTTTATTCCCTTTT-ATCACGT-------------GA---CC---------------A-C-AATC--CGAATT-A-CATTGGCT-AAACCCAAATGGTCACACTATAAATTT
gi|121153 : GC-GAGC-TTT-TATACCCTTTT-ATCACGT-------------GA---TCCTGACACAGATGTTTA-C-A-TC--TGAAAT-AATATT--CT-GAACCCAAATGGTTGCATTATAAATTT
Alignments
lowQualScore : 1111111111111 444444444444444 1 1
lowQualScore : 2 2 3 5 3333333333333 444 666666666666666 2 0 2 55 0 2 5 2 0
lowQualScore : . . . . ............. ... ............... . . . .. . . . . .
lowQualScore : 5 5 4 0 8888888888888 444 999999999999999 5 0 5 99 0 5 6 5 7
consensus : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
Reference ( family-975 ) : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
gi|121138 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAT-A-TATTGGCT-AAACCCAAATAGTAACACTATAAATTT
gi|121139 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAAAC----ATTGGCT-AAACCAAAATAGTCACACTATAAATTT
gi|121140 : ATTGACTTCAGAGCGC-GGTA-TTTTCATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-CATTGGCT-AAACCCAAATGGTCACACTATAACTTT
gi|121141 : ACTAACTTCAGAGCGC-GGGA-TTTTTATACCCTTTT-GTCATGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAACCAAAATGGTCAC
gi|121142 : ATTGACTTCGGAGTGC-GGGC-TTTTTATACCCTTTT-ATAACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAATACAAATGGTCACACTATAAATTT
gi|121143 : ATTGGCTTTCGAGCGCCGAGC-TTTATATGCCCTTTTTGTCACGT-------------GA---CC---------------A-C-A-TT--CGAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATAAATTT
gi|121144 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------AGA-A-TC--CGAAAC-A-AATTGGCT-TAACCCAAAT
gi|121145 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGTATTATAAATTT
gi|121146 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGTACATCATAACACGGATGTTT---------------A-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATTT
gi|121147 : ATTGGCTTCCGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TC---------------A-T-A-ACA-CGGAACAA-TGTT--CT-GAACCCAAATGGTCGCATTGTAAATTT
gi|121148 : ACTGGCTTCCGAGCGC-GAGC-TTTTTACACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAACAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATT
gi|121149 : TTGACTTCAGAGCGC-GAGC-TTTATATACCTTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CAAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATACATTT
gi|121150 : TTGACTTCAGAGCAC-GGGC-TTTATATACCCTTTTTGTCACGT-------------GA---CC---------------G-C-A-TT--CGAAAT-A-TATTGGCT-AAACACAAATAGTCACACTATAAATTT
gi|121151 : TTGACTTCAGAG-AC-GG-C-TTTATATACCTTTTT-GTCACGT--------------A---CC---------------G-C-A-TCTGCGAAAT-A--ATTGGCTAAAACACAAATAGT-ACACTA-AAATT
gi|121152 : CGC-GGGCATTTTTATTCCCTTTT-ATCACGT-------------GA---CC---------------A-C-AATC--CGAATT-A-CATTGGCT-AAACCCAAATGGTCACACTATAAATTT
gi|121153 : GC-GAGC-TTT-TATACCCTTTT-ATCACGT-------------GA---TCCTGACACAGATGTTTA-C-A-TC--TGAAAT-AATATT--CT-GAACCCAAATGGTTGCATTATAAATTT
blockSeqs : C A A T ACATCATAACACG TGT ATAACACGGATGTTT G A A TG A A G A
blockSeqs : . . T T . . ATAACACGGATGTTT . A . A A . G .
blockSeqs : . . T . . . CTGACACAGATGTTT . A . . A . G .
blockSeqs : . . T . . . . . A . . A . G .
blockSeqs : . . A . . . . . . . . . . G .
blockSeqs : . . A . . . . . . . . . . G .
blockSeqs : . . T . . . . . . . . . . G .
blockSeqs : . . T . . . . . . . . . . G .
blockSeqs : . . T . . . . . . . . . . G .
blockSeqs : . . T . . . . . . . . . . G .
blockSeqs : . . A . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
finalCons : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
Alignments
lowQualScore : 1111111111111 444444444444444 1 1
lowQualScore : 2 2 3 5 3333333333333 444 666666666666666 2 0 2 55 0 2 5 2 0
lowQualScore : . . . . ............. ... ............... . . . .. . . . . .
lowQualScore : 5 5 4 0 8888888888888 444 999999999999999 5 0 5 99 0 5 6 5 7
consensus : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
Reference ( family-975 ) : ATTGACTTCAGAGCGC-GGGC-TTTNTATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAC-A-TATTGGCT-AAACCCAAATGGTCGCACTATAAATTT
gi|121138 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CGAAAT-A-TATTGGCT-AAACCCAAATAGTAACACTATAAATTT
gi|121139 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAAAC----ATTGGCT-AAACCAAAATAGTCACACTATAAATTT
gi|121140 : ATTGACTTCAGAGCGC-GGTA-TTTTCATACCCTTTT-GTCACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-CATTGGCT-AAACCCAAATGGTCACACTATAACTTT
gi|121141 : ACTAACTTCAGAGCGC-GGGA-TTTTTATACCCTTTT-GTCATGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAACCAAAATGGTCAC
gi|121142 : ATTGACTTCGGAGTGC-GGGC-TTTTTATACCCTTTT-ATAACGT-------------GA---CC---------------A-CAA-TC--CGAAAC-A-TATTGGCT-AAATACAAATGGTCACACTATAAATTT
gi|121143 : ATTGGCTTTCGAGCGCCGAGC-TTTATATGCCCTTTTTGTCACGT-------------GA---CC---------------A-C-A-TT--CGAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATAAATTT
gi|121144 : ATTGACTTCAGAGCGC-GGGC-TTTATATACCCTTTT-GTCACGT-------------GA---CC---------------AGA-A-TC--CGAAAC-A-AATTGGCT-TAACCCAAAT
gi|121145 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGTATTATAAATTT
gi|121146 : ATTGACTTCAGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGTACATCATAACACGGATGTTT---------------A-C-A-TC--TGAAATAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATTT
gi|121147 : ATTGGCTTCCGAGCGC-GGGC-TTTTTATACCCTTTT-ATCACGT-------------GA---TC---------------A-T-A-ACA-CGGAACAA-TGTT--CT-GAACCCAAATGGTCGCATTGTAAATTT
gi|121148 : ACTGGCTTCCGAGCGC-GAGC-TTTTTACACCCTTTT-ATCACGT-------------GA---TCATAACACGGATGTTTA-C-A-TC--TGAAACAA-TGTT--CT-GAACCCAAATGGTCGCATTATAAATT
gi|121149 : TTGACTTCAGAGCGC-GAGC-TTTATATACCTTTTT-GTCACGT-------------GA---CC---------------A-C-A-TC--CAAAAT-A-TATTGGCT-AAACCCAAATAGCCACACTATACATTT
gi|121150 : TTGACTTCAGAGCAC-GGGC-TTTATATACCCTTTTTGTCACGT-------------GA---CC---------------G-C-A-TT--CGAAAT-A-TATTGGCT-AAACACAAATAGTCACACTATAAATTT
gi|121151 : TTGACTTCAGAG-AC-GG-C-TTTATATACCTTTTT-GTCACGT--------------A---CC---------------G-C-A-TCTGCGAAAT-A--ATTGGCTAAAACACAAATAGT-ACACTA-AAATT
gi|121152 : CGC-GGGCATTTTTATTCCCTTTT-ATCACGT-------------GA---CC---------------A-C-AATC--CGAATT-A-CATTGGCT-AAACCCAAATGGTCACACTATAAATTT
gi|121153 : GC-GAGC-TTT-TATACCCTTTT-ATCACGT-------------GA---TCCTGACACAGATGTTTA-C-A-TC--TGAAAT-AATATT--CT-GAACCCAAATGGTTGCATTATAAATTT