lowQualScore : 111 1111111 333333333333 11
lowQualScore : 2 66 4 3 44 3 3 000 3 3 44 999999 4444444 55 44 3 3 3 99 0 3 555 2 444444444444 2 8888888 33 2 2 2 88 66666 33 33 2 3
lowQualScore : . .. . . .. . . ... . . .. ...... ....... .. .. . . . .. . . ... . ............ . ....... .. . . . .. ..... .. .. . .
lowQualScore : 5 99 0 6 99 6 6 000 6 3 66 666666 2222222 00 66 1 1 1 22 8 1 000 9 777777777777 9 7777777 77 7 7 7 11 77777 77 55 7 3
consensus : CTCTTCCTGANTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-T----------G-AATAT-TTTT-------GTTTGTA--C-CTC-ATGTA-CCAG-T-----G--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
Reference ( gi|123303 ) : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-T----------T-AATAT-TTTT-------GTTTGTA--C-CTC-ATGTA-CCAC-T-----G--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123305 : CTCTTCCTAAATAATGCACTTGTACCTA--GTTATATGC-TTA-TT--GT-TTT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------GTG--CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-T----------G-AATA--TTTT-------GTTTGTA--C-CTCAATGTA-CCAG-T-----G--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123306 : CTCTTCCTAAATAATGCACTTGTATCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CATAACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTGTTA-ATGA-TACTTT---TATA-T----------G-AATAT-TTTT-------GTTTGTA--C-CTC-ATGT--CCAG-T-----G--ATCTGG--TTTGAGTGAAT-AAATGAATTAGAA
gi|123307 : CTCTTCCTGACTAATGTACTTGTACCTA--GTTATAAGC-TTA-TTT-GT-TCT-CAGCA---CAT-----G-TAT--AT------TTGTTAT-------ATGA-CCC--TTTA-CTAG-TA-ATGA-TACTTT---TATA-T----------G-AATAT-TTTT-------GTTTACA--C-CTC-GTGTA-CCAG-T-----G--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123308 : CTCTTCCTGACTAATGTACTTGTACCTATAGTTCTATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--ATGCATGCATGTTAT-------TTGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TGTCAGATAATTGAATAT-TTTA-------GTTTGTA--C-CTC-ATCTT-CCAG-T-----G--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123304 : CTGTTCCTGACTAATGCACTTGTAC-TA--GTTATATGC-TTAATTT-GT-TCT-CAGCAA--CAT-AACTG-TGTTAAT------ATGTTATC------ATGA-CCC--TT-AACTTG-TA-ATGA-TACTTT---TATA-T----------T-AATAT-TTTT-------GTTTGTACGC-CTC-ATGTAGCCAC-T-----G--ATCTGGTTTTTGAGTGAATAAAATGAATT-GAA
gi|123309 : TCTTTCTAAATAATGCACTTGTATCTA--GTTATATGCCTTA-TTTTGT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-T----------G-AATAC-TTTT-------GTTTGTA--C-CTC-ATGTA-CCAG-T-----G--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123310 : GCACTTACACCTA--ACAATACTT-TTA-TTC-AT-TTTTCAATG---CAT-ACTTG-TAC--AT------AT-TT-T-------GTGA-CCC--TT-A-CTTA-CA-------ACCTG---TATA------------T-A------TTT-------GTTTGAC--C-CTC-ATGTA-CCAA-T-----A--ATCTAG-TTT--AAT---T-AAATG
gi|123311 : TGTACCTG--GCTGTTTGT-TTA-TT---T-TTT-CAATA---CAT-ACTTG-------T------CTGTTTT-------GTG--CTA--TT-A-CCTG-TA-------CCTTTTTGTATA-T----------G-CATAT-TTTT-------A-ATGAA--C-CTC-GTGTG-CCATATGCAGGG--ATCTGG-GTAAGGGTGAAT-AAA
gi|123312 : ATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTGGTAT--AT------ATGTTAT-------ATGAACCC--TT-A-CTTG-TA--TGA-TACTTT---TATAAT----------G-AATAT-TTT--------GTTTGTA--AACTC-ATGTA-CCAGAT-----G--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123313 : C-TT--TTT-GTGTTT-TATCATTTCAT-A--TG-TAT--AT------ATGTTAT-------ATGG-CCC--TT-A-CTTG-TA----A-TAC----------------------------T-TTTT-------GTTTGTA--C-CTC-ATGTA-CCAG-T-----G--ATCTGG-TTTTGAGTGAAT-AAATGAAAT-GA
gi|123314 : -TTT-AT-TAT-CAGCA----AT--CATG-TAT--GT------AT--TATGCCCAGGAGGG-CCC--CT-A-TTTG-GA-ATAAATAATTC---TATA-TATCTACC---T-ACGGT-TTTTATATATAGTTT-TA--C-CTC-GTGTA-CTGG-T-----G--ATCTGA-TTTTGAGTGAAT-
gi|123315 : G-TGT--AT------ATGT-AT-------ATGA-CCCCTTT-A-CTTG-TA-ATGA-TAATTT---TATA-T----------G-AATAT-TTTT-------GTTTGTA--C-C-C-ATGTA--CAG-T-----GACATCTGG--TTTGAGTGAAT-AAATGAATT-GAA
gi|123316 : T-A-TTTA-TATAT---TACTTG---TATG-T----------A-GATAT-TT---------GTTTGTA--C-CCC-AT-TA-CCAG-A-----T--ATCTGG-TTTTGAGTTAAT-AAAT-AATT-GAA
gi|123317 : ACTTT---TATG-T-------------GTGTCTTTT-------GTTTGTT--C-CTC-ACGTA-CCAG-T-----G--CTCTGG-TTTTGAGTGAAA-AAATAAATT-GA
gi|123318 : TTT-------GTTTGTA--C-CTC-GTGTA-CTAG-T-----G--ATCTGG-ATTTGAGTAAAT-TAAT-AATT-GAA
Alignments
lowQualScore : 1111111 111111111111
lowQualScore : 1 66 3 3 33 3 3 999 3 3 44 888888 3333333 33 44 2 2 2 44 0 2 444 2 666666666666 8888888 2 8888888 33 2 2 2 777777 2 33 22 2 3
lowQualScore : . .. . . .. . . ... . . .. ...... ....... .. .. . . . .. . . ... . ............ ....... . ....... .. . . . ...... . .. .. . .
lowQualScore : 0 11 6 3 88 3 3 222 3 1 22 888888 1111111 99 22 9 9 9 44 1 9 777 7 111111111111 7777777 7 1111111 44 5 5 5 222222 5 44 88 5 1
consensus : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
Reference ( family-970 ) : CTCTTCCTGANTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123303 : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TT-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAC-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123304 : CTGTTCCTGACTAATGCACTTGTAC-TA--GTTATATGC-TTAATTT-GT-TCT-CAGCAA--CAT-AACTG-TGTTAAT------ATGTTATC------ATGA-CCC--TT-AACTTG-TA-ATGA-TACTTT---TATA-TT-----------AATA-------T-TTTT-------GTTTGTACGC-CTC-ATGTAGC------CAC-TG--ATCTGGTTTTTGAGTGAATAAAATGAATT-GAA
gi|123305 : CTCTTCCTAAATAATGCACTTGTACCTA--GTTATATGC-TTA-TT--GT-TTT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------GTG--CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA---------TTTT-------GTTTGTA--C-CTCAATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123306 : CTCTTCCTAAATAATGCACTTGTATCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CATAACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTGTTA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGT--C------CAG-TG--ATCTGG--TTTGAGTGAAT-AAATGAATTAGAA
gi|123307 : CTCTTCCTGACTAATGTACTTGTACCTA--GTTATAAGC-TTA-TTT-GT-TCT-CAGCA---CAT-----G-TAT--AT------TTGTTAT-------ATGA-CCC--TTTA-CTAG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTACA--C-CTC-GTGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123308 : CTCTTCCTGACTAATGTACTTGTACCTATAGTTCTATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--ATGCATGCATGTTAT-------TTGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TGTCAGATAATTGAATA-------T-TTTA-------GTTTGTA--C-CTC-ATCTT-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123309 : TCTTTCTAAATAATGCACTTGTATCTA--GTTATATGCCTTA-TTTTGT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------C-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123310 : GCACTTACACCTA--ACAATACTT-TTA-TTC-AT-TTTTCAATG---CAT-ACTTG-TAC--AT------AT-TT-T-------GTGA-CCC--TT-A-CTTA-CA-A------CCTG---TATA-TA-------------------------TTT-------GTTTGAC--C-CTC-ATGTA-C------CAA-TA--ATCTAG-TTT--AAT---T-AAATG
gi|123311 : TGTACCTG--GCTGTTTGT-TTA-TT---T-TTT-CAATA---CAT-ACTTG-------T------CTGTTTT-------GTG--CTA--TT-A-CCTG-TA-------CCTTTTTGTATA-TG-----------CATA-------T-TTTT-------A-ATGAA--C-CTC-GTGTG-CCATATGCAG-GG--ATCTGG-GTAAGGGTGAAT-AAA
gi|123312 : ATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTGGTAT--AT------ATGTTAT-------ATGAACCC--TT-A-CTTG-TA--TGA-TACTTT---TATAATG-----------AATA-------T-TTT--------GTTTGTA--AACTC-ATGTA-C------CAGATG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123313 : C-TT--TTT-GTGTTT-TATCATTTCAT-A--TG-TAT--AT------ATGTTAT-------ATGG-CCC--TT-A-CTTG-TA----A-TAC-----------------------------------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAAAT-GA
gi|123314 : -TTT-AT-TAT-CAGCA----AT--CATG-TAT--GT------AT--TATGCCCAGGAGGG-CCC--CT-A-TTTG-GA-ATAAATAATTC---TATA-TA-----------TCTACCTACGGT-TTTTATATATAGTTT-TA--C-CTC-GTGTA-C------TGG-TG--ATCTGA-TTTTGAGTGAAT-
gi|123315 : G-TGT--AT------ATGT-AT-------ATGA-CCCCTTT-A-CTTG-TA-ATGA-TAATTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-C-C-ATGTA--------CAG-TGACATCTGG--TTTGAGTGAAT-AAATGAATT-GAA
gi|123316 : T-A-TTTA-TATAT---TACTTG---TATG-TA-----------GATA-------T-TT---------GTTTGTA--C-CCC-AT-TA-C------CAG-AT--ATCTGG-TTTTGAGTTAAT-AAAT-AATT-GAA
gi|123317 : ACTTT---TATG-TG-------------TG-------TCTTTT-------GTTTGTT--C-CTC-ACGTA-C------CAG-TG--CTCTGG-TTTTGAGTGAAA-AAATAAATT-GA
gi|123318 : TTT-------GTTTGTA--C-CTC-GTGTA-C------TAG-TG--ATCTGG-ATTTGAGTAAAT-TAAT-AATT-GAA
Alignments
lowQualScore : 1111111 111111111111
lowQualScore : 0 66 3 3 33 3 3 999 3 3 44 888888 3333333 33 44 2 2 2 44 0 2 444 2 666666666666 8888888 2 8888888 33 2 2 2 777777 2 33 22 2 3
lowQualScore : . .. . . .. . . ... . . .. ...... ....... .. .. . . . .. . . ... . ............ ....... . ....... .. . . . ...... . .. .. . .
lowQualScore : 7 11 6 3 88 3 3 222 3 1 22 888888 1111111 99 22 9 9 9 44 1 9 777 7 111111111111 7777777 7 1111111 44 5 5 5 222222 5 44 88 5 1
consensus : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
Reference ( family-970 ) : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123303 : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TT-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAC-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123304 : CTGTTCCTGACTAATGCACTTGTAC-TA--GTTATATGC-TTAATTT-GT-TCT-CAGCAA--CAT-AACTG-TGTTAAT------ATGTTATC------ATGA-CCC--TT-AACTTG-TA-ATGA-TACTTT---TATA-TT-----------AATA-------T-TTTT-------GTTTGTACGC-CTC-ATGTAGC------CAC-TG--ATCTGGTTTTTGAGTGAATAAAATGAATT-GAA
gi|123305 : CTCTTCCTAAATAATGCACTTGTACCTA--GTTATATGC-TTA-TT--GT-TTT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------GTG--CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA---------TTTT-------GTTTGTA--C-CTCAATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123306 : CTCTTCCTAAATAATGCACTTGTATCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CATAACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTGTTA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGT--C------CAG-TG--ATCTGG--TTTGAGTGAAT-AAATGAATTAGAA
gi|123307 : CTCTTCCTGACTAATGTACTTGTACCTA--GTTATAAGC-TTA-TTT-GT-TCT-CAGCA---CAT-----G-TAT--AT------TTGTTAT-------ATGA-CCC--TTTA-CTAG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTACA--C-CTC-GTGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123308 : CTCTTCCTGACTAATGTACTTGTACCTATAGTTCTATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--ATGCATGCATGTTAT-------TTGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TGTCAGATAATTGAATA-------T-TTTA-------GTTTGTA--C-CTC-ATCTT-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123309 : TCTTTCTAAATAATGCACTTGTATCTA--GTTATATGCCTTA-TTTTGT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------C-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123310 : GCACTTACACCTA--ACAATACTT-TTA-TTC-AT-TTTTCAATG---CAT-ACTTG-TAC--AT------AT-TT-T-------GTGA-CCC--TT-A-CTTA-CA-A------CCTG---TATA-TA-------------------------TTT-------GTTTGAC--C-CTC-ATGTA-C------CAA-TA--ATCTAG-TTT--AAT---T-AAATG
gi|123311 : TGTACCTG--GCTGTTTGT-TTA-TT---T-TTT-CAATA---CAT-ACTTG-------T------CTGTTTT-------GTG--CTA--TT-A-CCTG-TA-------CCTTTTTGTATA-TG-----------CATA-------T-TTTT-------A-ATGAA--C-CTC-GTGTG-CCATATGCAG-GG--ATCTGG-GTAAGGGTGAAT-AAA
gi|123312 : ATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTGGTAT--AT------ATGTTAT-------ATGAACCC--TT-A-CTTG-TA--TGA-TACTTT---TATAATG-----------AATA-------T-TTT--------GTTTGTA--AACTC-ATGTA-C------CAGATG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123313 : C-TT--TTT-GTGTTT-TATCATTTCAT-A--TG-TAT--AT------ATGTTAT-------ATGG-CCC--TT-A-CTTG-TA----A-TAC-----------------------------------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAAAT-GA
gi|123314 : -TTT-AT-TAT-CAGCA----AT--CATG-TAT--GT------AT--TATGCCCAGGAGGG-CCC--CT-A-TTTG-GA-ATAAATAATTC---TATA-TA-----------TCTACCTACGGT-TTTTATATATAGTTT-TA--C-CTC-GTGTA-C------TGG-TG--ATCTGA-TTTTGAGTGAAT-
gi|123315 : G-TGT--AT------ATGT-AT-------ATGA-CCCCTTT-A-CTTG-TA-ATGA-TAATTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-C-C-ATGTA--------CAG-TGACATCTGG--TTTGAGTGAAT-AAATGAATT-GAA
gi|123316 : T-A-TTTA-TATAT---TACTTG---TATG-TA-----------GATA-------T-TT---------GTTTGTA--C-CCC-AT-TA-C------CAG-AT--ATCTGG-TTTTGAGTTAAT-AAAT-AATT-GAA
gi|123317 : ACTTT---TATG-TG-------------TG-------TCTTTT-------GTTTGTT--C-CTC-ACGTA-C------CAG-TG--CTCTGG-TTTTGAGTGAAA-AAATAAATT-GA
gi|123318 : TTT-------GTTTGTA--C-CTC-GTGTA-C------TAG-TG--ATCTGG-ATTTGAGTAAAT-TAAT-AATT-GAA
blockSeqs : TA C A TT G T TTT A G TA GCATGC GCCCAGG AA CT T A T TA A TTG A TCAGATAATTGA CCTACGG C ATATATA CG A A G CATATG A AC TT A A
blockSeqs : . . . T . . A . . . . C A . . . . A . . . A . . . . . . . . . . T . .
blockSeqs : . . . T . . . . . . . . A . . . . A . . . A . . . . . . . . . . T . .
blockSeqs : . . . T . . . . . . . . A . . . . A . . . A . . . . . . . . . . T . .
blockSeqs : . . . T . . . . . . . . A . . . . A . . . A . . . . . . . . . . T . .
blockSeqs : . . . C . . . . . . . . A . . . . A . . . A . . . . . . . . . . T . .
blockSeqs : . . . T . . . . . . . . A . . . . A . . . C . . . . . . . . . . G . .
blockSeqs : . . . T . . . . . . . . G . . . . A . . . A . . . . . . . . . . T . .
blockSeqs : . . T . . . . . . . . G . . . . A . . . T . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . A . . . . A . . . A . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
finalCons : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
Alignments
lowQualScore : 1111111 111111111111
lowQualScore : 0 66 3 3 33 3 3 999 3 3 44 888888 3333333 33 44 2 2 2 44 0 2 444 2 666666666666 8888888 2 8888888 33 2 2 2 777777 2 33 22 2 3
lowQualScore : . .. . . .. . . ... . . .. ...... ....... .. .. . . . .. . . ... . ............ ....... . ....... .. . . . ...... . .. .. . .
lowQualScore : 7 11 6 3 88 3 3 222 3 1 22 888888 1111111 99 22 9 9 9 44 1 9 777 7 111111111111 7777777 7 1111111 44 5 5 5 222222 5 44 88 5 1
consensus : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
Reference ( family-970 ) : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123303 : CTCTTCCTGACTAATGCACTTGTACCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TT-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAC-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123304 : CTGTTCCTGACTAATGCACTTGTAC-TA--GTTATATGC-TTAATTT-GT-TCT-CAGCAA--CAT-AACTG-TGTTAAT------ATGTTATC------ATGA-CCC--TT-AACTTG-TA-ATGA-TACTTT---TATA-TT-----------AATA-------T-TTTT-------GTTTGTACGC-CTC-ATGTAGC------CAC-TG--ATCTGGTTTTTGAGTGAATAAAATGAATT-GAA
gi|123305 : CTCTTCCTAAATAATGCACTTGTACCTA--GTTATATGC-TTA-TT--GT-TTT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------GTG--CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA---------TTTT-------GTTTGTA--C-CTCAATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123306 : CTCTTCCTAAATAATGCACTTGTATCTA--GTTATATGC-TTA-TTT-GT-TCT-CAGCA---CATAACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTGTTA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-CTC-ATGT--C------CAG-TG--ATCTGG--TTTGAGTGAAT-AAATGAATTAGAA
gi|123307 : CTCTTCCTGACTAATGTACTTGTACCTA--GTTATAAGC-TTA-TTT-GT-TCT-CAGCA---CAT-----G-TAT--AT------TTGTTAT-------ATGA-CCC--TTTA-CTAG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------T-TTTT-------GTTTACA--C-CTC-GTGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123308 : CTCTTCCTGACTAATGTACTTGTACCTATAGTTCTATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTG-TAT--ATGCATGCATGTTAT-------TTGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TGTCAGATAATTGAATA-------T-TTTA-------GTTTGTA--C-CTC-ATCTT-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123309 : TCTTTCTAAATAATGCACTTGTATCTA--GTTATATGCCTTA-TTTTGT-TCT-CAGCA---CAT-ACTTG-TAT--AT------ATGTTAT-------ATGA-CCC--TT-A-CTTG-TA-ATGA-TACTTT---TATA-TG-----------AATA-------C-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123310 : GCACTTACACCTA--ACAATACTT-TTA-TTC-AT-TTTTCAATG---CAT-ACTTG-TAC--AT------AT-TT-T-------GTGA-CCC--TT-A-CTTA-CA-A------CCTG---TATA-TA-------------------------TTT-------GTTTGAC--C-CTC-ATGTA-C------CAA-TA--ATCTAG-TTT--AAT---T-AAATG
gi|123311 : TGTACCTG--GCTGTTTGT-TTA-TT---T-TTT-CAATA---CAT-ACTTG-------T------CTGTTTT-------GTG--CTA--TT-A-CCTG-TA-------CCTTTTTGTATA-TG-----------CATA-------T-TTTT-------A-ATGAA--C-CTC-GTGTG-CCATATGCAG-GG--ATCTGG-GTAAGGGTGAAT-AAA
gi|123312 : ATATGC-TTA-TTT-GT-TCT-CAGCA---CAT-ACTTGGTAT--AT------ATGTTAT-------ATGAACCC--TT-A-CTTG-TA--TGA-TACTTT---TATAATG-----------AATA-------T-TTT--------GTTTGTA--AACTC-ATGTA-C------CAGATG--ATCTGG-TTTTGAGTGAAT-AAATGAATT-GAA
gi|123313 : C-TT--TTT-GTGTTT-TATCATTTCAT-A--TG-TAT--AT------ATGTTAT-------ATGG-CCC--TT-A-CTTG-TA----A-TAC-----------------------------------T-TTTT-------GTTTGTA--C-CTC-ATGTA-C------CAG-TG--ATCTGG-TTTTGAGTGAAT-AAATGAAAT-GA
gi|123314 : -TTT-AT-TAT-CAGCA----AT--CATG-TAT--GT------AT--TATGCCCAGGAGGG-CCC--CT-A-TTTG-GA-ATAAATAATTC---TATA-TA-----------TCTACCTACGGT-TTTTATATATAGTTT-TA--C-CTC-GTGTA-C------TGG-TG--ATCTGA-TTTTGAGTGAAT-
gi|123315 : G-TGT--AT------ATGT-AT-------ATGA-CCCCTTT-A-CTTG-TA-ATGA-TAATTT---TATA-TG-----------AATA-------T-TTTT-------GTTTGTA--C-C-C-ATGTA--------CAG-TGACATCTGG--TTTGAGTGAAT-AAATGAATT-GAA
gi|123316 : T-A-TTTA-TATAT---TACTTG---TATG-TA-----------GATA-------T-TT---------GTTTGTA--C-CCC-AT-TA-C------CAG-AT--ATCTGG-TTTTGAGTTAAT-AAAT-AATT-GAA
gi|123317 : ACTTT---TATG-TG-------------TG-------TCTTTT-------GTTTGTT--C-CTC-ACGTA-C------CAG-TG--CTCTGG-TTTTGAGTGAAA-AAATAAATT-GA
gi|123318 : TTT-------GTTTGTA--C-CTC-GTGTA-C------TAG-TG--ATCTGG-ATTTGAGTAAAT-TAAT-AATT-GAA