lowQualScore : 11 111 111
lowQualScore : 3 8888 2 444 2 2 5555 7777777 2 2 77777 00 77 222 33 222
lowQualScore : . .... . ... . . .... ....... . . ..... .. .. ... .. ...
lowQualScore : 1 9999 9 777 7 7 7777 7777777 7 7 77777 99 11 333 77 000
consensus : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT--GC---GA-A-A-T---T-GTGCTTGG-AAAAGT-C-AAATT--TGCTG---TTATTTT
Reference ( gi|78913 ) : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT--GT---GA-A-A-T---T-GTGCTTGG-GAAAGT-T-AAATT--TGCTG---TTATTTT
gi|78916 : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGAACCA----CTCTAT--GT---GA-A-A-T---T-GTGCTTGG-AAAAGT-A-AAATT--TGCTGTTTTTATTTT
gi|78915 : TATTTT-ACT----CAGTTT-A---CA-TGGAGA-CT-TGACCCA----CTGTAT--GT---GA-A-A-T---T-TTGCTTGG-AAAAGT-C-AAATT--TGCTG---TTATTT
gi|78917 : TATTTT-AGT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT--GT---GA-A-A-T---T-GTACTTGG-AATAGT-A-AAATG--TGCTG---TTATTTT
gi|78914 : TATTTT-ACTT---CAGTTT-A---CAATGGAGA-CTGTGACCCA----CTCTAT--GTCTGGA-A-A-----T-GTGCTTGGAGAAAGT-TAAAATT--TGCTGT--TTATTTT
gi|78921 : TATTTT-ACT----C-GTTT-A---CAATGGAAA-CT-TGACCT-----CTCTAT--GT---GA-A-ATT---T-GTGTTT-G-GAAAGT-A-AAATT--TGCTG---TTATT
gi|78919 : TATTTC-ACT----CTGTTG-A---CAATGGAGA-CT-TGACCCATGCACTCCAT--GC---GA-A-A-A---C-TTGCTTGG-AAAAGT-C-AAATT--TATTG---TTATTTT
gi|78920 : TATTTG-ACT----CGGTTC-A---CAATGGAGA-CT-TGACCCA----CTCCAT--AC---GATA-A-TATAT-ATGCTTGG-AAAAGT-C-GAATT--TACTG-----ATTTT
gi|78918 : TATTTT-TCT----CAGTTC-A---CAATGGAGA-CT-TGACCCA----CTTTAC--AC---AA-ACA-T---T--TGCTTGG-AAAAGT-C-GAATT--TGGTG---TT-TTTT
gi|78923 : TATTTT-TCT----TAGTTC-A---TAATGGAGA-CT-TGACCCA----CTCCAT--AC---GA-A-A-T---T-GTGCGCTG-AAAAGT-C-AAATT--TACAT---TTATT
gi|78922 : TATTTT-ACT----CAGTTG-A---CAATAGACA-AT-TGGCCCA----CTCTAT--AC---GA-A-A-T---T-TTGCTTCG-AAAAGT-C-GAATT--TACTA---ACATTTT
gi|78924 : TATTTTCACT----CAGCTT-AGTACATGGGAGA-CT-TGACCCA----CT-TATTCG----GA-A-A-T---T--TGCTT-G-AAAAGT-C-AAATT--TACTG---GTATTTT
gi|78925 : ATTTT-ACTACTTCAGTTT-A---CAATGGAGA-CT-TGACC------CTCTAT--GT---GA-A-A-TA--TAATGCTTGG-TAACGTAC-AATTT--TGCTG---TTATTTT
gi|78926 : TTT-ACT----CAGTTTTA---CAATGGAGACCT-TGACCCA----CTC-ATG-GT---GA-A-A-T---T--TGCTTGG-AAAAGT-C-AAATTTGTGCTG---TTATT
gi|78927 : ----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTGT--AT---GA-A-A-T---T-GTGCTTGG-AAAAGT-A-AAATT--TATTG---TTATTTT
gi|78928 : ---CAATGAAGA-CT-TGGCCCA----CTCCAT--AC---GG-A-A-A---T-ATGTTCGG-AAAAGT-T-GAATT--TACTGTAATTATTTT
Alignments
lowQualScore : 11 111
lowQualScore : 2 8888 2 444 2 2 5555 2 444 2 2 2 666 22 2 444 33 111
lowQualScore : . .... . ... . . .... . ... . . . ... .. . ... .. ...
lowQualScore : 9 3333 7 444 5 5 3333 5 444 5 5 5 999 11 5 222 44 222
consensus : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
Reference ( family-969 ) : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
gi|78913 : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GT---G-A-A-AT---T-GTGCTTGGG-AAAGT-T-AAATT--TGCTG---TTATTTT
gi|78914 : TATTTT-ACTT---CAGTTT-A---CAATGGAGA-CTGTGACCCA----CTCTAT-GTCTGG-A-A-A----T-GTGCTTGGAGAAAGT-TAAAATT--TGCTGT--TTATTTT
gi|78915 : TATTTT-ACT----CAGTTT-A---CA-TGGAGA-CT-TGACCCA----CTGTAT-GT---G-A-A-AT---T-TTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTT
gi|78916 : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGAACCA----CTCTAT-GT---G-A-A-AT---T-GTGCTTGGA-AAAGT-A-AAATT--TGCTGTTTTTATTTT
gi|78917 : TATTTT-AGT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GT---G-A-A-AT---T-GTACTTGGA-ATAGT-A-AAATG--TGCTG---TTATTTT
gi|78918 : TATTTT-TCT----CAGTTC-A---CAATGGAGA-CT-TGACCCA----CTTTAC-AC---A-A-ACAT---T--TGCTTGGA-AAAGT-C-GAATT--TGGTG---TT-TTTT
gi|78919 : TATTTC-ACT----CTGTTG-A---CAATGGAGA-CT-TGACCCATGCACTCCAT-GC---G-A-A-AA---C-TTGCTTGGA-AAAGT-C-AAATT--TATTG---TTATTTT
gi|78920 : TATTTG-ACT----CGGTTC-A---CAATGGAGA-CT-TGACCCA----CTCCAT-AC---G-ATA-ATATAT-ATGCTTGGA-AAAGT-C-GAATT--TACTG-----ATTTT
gi|78921 : TATTTT-ACT----C-GTTT-A---CAATGGAAA-CT-TGACCT-----CTCTAT-GT---G-A-A-AT---TTGTGTTTGGA-AA-GT-A-AAATT--TGCTG---TTATT
gi|78922 : TATTTT-ACT----CAGTTG-A---CAATAGACA-AT-TGGCCCA----CTCTAT-AC---G-A-A-AT---T-TTGCTTCGA-AAAGT-C-GAATT--TACTA---ACATTTT
gi|78923 : TATTTT-TCT----TAGTTC-A---TAATGGAGA-CT-TGACCCA----CTCCAT-AC---G-A-A-AT---T-GTGCGCTGA-AAAGT-C-AAATT--TACAT---TTATT
gi|78924 : TATTTTCACT----CAGCTT-AGTACATGGGAGA-CT-TGACCCA----CT-TAT-TC---GGA-A-AT---T--TGCTTG-A-AAAGT-C-AAATT--TACTG---GTATTTT
gi|78925 : ATTTT-ACTACTTCAGTTT-A---CAATGGAGA-CT-TGACC------CTCTAT-GT---G-A-A-ATA--TAATGCTTGGT-AACGTAC-AATTT--TGCTG---TTATTTT
gi|78926 : TTT-ACT----CAGTTTTA---CAATGGAGACCT-TGACCCA----CTC-ATGGT---G-A-A-AT---T--TGCTTGGA-AAAGT-C-AAATTTGTGCTG---TTATT
gi|78927 : ----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTGT-AT---G-A-A-AT---T-GTGCTTGGA-AAAGT-A-AAATT--TATTG---TTATTTT
gi|78928 : ---CAATGAAGA-CT-TGGCCCA----CTCCAT-AC---G-G-A-AA---T-ATGTTCGGA-AAAGT-T-GAATT--TACTGTAATTATTTT
Alignments
lowQualScore : 11 111
lowQualScore : 2 8888 2 444 2 2 5555 2 444 2 2 2 666 22 2 444 33 111
lowQualScore : . .... . ... . . .... . ... . . . ... .. . ... .. ...
lowQualScore : 9 3333 7 444 5 5 3333 5 444 5 5 5 999 11 5 222 44 222
consensus : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
Reference ( family-969 ) : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
gi|78913 : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GT---G-A-A-AT---T-GTGCTTGGG-AAAGT-T-AAATT--TGCTG---TTATTTT
gi|78914 : TATTTT-ACTT---CAGTTT-A---CAATGGAGA-CTGTGACCCA----CTCTAT-GTCTGG-A-A-A----T-GTGCTTGGAGAAAGT-TAAAATT--TGCTGT--TTATTTT
gi|78915 : TATTTT-ACT----CAGTTT-A---CA-TGGAGA-CT-TGACCCA----CTGTAT-GT---G-A-A-AT---T-TTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTT
gi|78916 : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGAACCA----CTCTAT-GT---G-A-A-AT---T-GTGCTTGGA-AAAGT-A-AAATT--TGCTGTTTTTATTTT
gi|78917 : TATTTT-AGT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GT---G-A-A-AT---T-GTACTTGGA-ATAGT-A-AAATG--TGCTG---TTATTTT
gi|78918 : TATTTT-TCT----CAGTTC-A---CAATGGAGA-CT-TGACCCA----CTTTAC-AC---A-A-ACAT---T--TGCTTGGA-AAAGT-C-GAATT--TGGTG---TT-TTTT
gi|78919 : TATTTC-ACT----CTGTTG-A---CAATGGAGA-CT-TGACCCATGCACTCCAT-GC---G-A-A-AA---C-TTGCTTGGA-AAAGT-C-AAATT--TATTG---TTATTTT
gi|78920 : TATTTG-ACT----CGGTTC-A---CAATGGAGA-CT-TGACCCA----CTCCAT-AC---G-ATA-ATATAT-ATGCTTGGA-AAAGT-C-GAATT--TACTG-----ATTTT
gi|78921 : TATTTT-ACT----C-GTTT-A---CAATGGAAA-CT-TGACCT-----CTCTAT-GT---G-A-A-AT---TTGTGTTTGGA-AA-GT-A-AAATT--TGCTG---TTATT
gi|78922 : TATTTT-ACT----CAGTTG-A---CAATAGACA-AT-TGGCCCA----CTCTAT-AC---G-A-A-AT---T-TTGCTTCGA-AAAGT-C-GAATT--TACTA---ACATTTT
gi|78923 : TATTTT-TCT----TAGTTC-A---TAATGGAGA-CT-TGACCCA----CTCCAT-AC---G-A-A-AT---T-GTGCGCTGA-AAAGT-C-AAATT--TACAT---TTATT
gi|78924 : TATTTTCACT----CAGCTT-AGTACATGGGAGA-CT-TGACCCA----CT-TAT-TC---GGA-A-AT---T--TGCTTG-A-AAAGT-C-AAATT--TACTG---GTATTTT
gi|78925 : ATTTT-ACTACTTCAGTTT-A---CAATGGAGA-CT-TGACC------CTCTAT-GT---G-A-A-ATA--TAATGCTTGGT-AACGTAC-AATTT--TGCTG---TTATTTT
gi|78926 : TTT-ACT----CAGTTTTA---CAATGGAGACCT-TGACCCA----CTC-ATGGT---G-A-A-AT---T--TGCTTGGA-AAAGT-C-AAATTTGTGCTG---TTATT
gi|78927 : ----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTGT-AT---G-A-A-AT---T-GTGCTTGGA-AAAGT-A-AAATT--TATTG---TTATTTT
gi|78928 : ---CAATGAAGA-CT-TGGCCCA----CTCCAT-AC---G-G-A-AA---T-ATGTTCGGA-AAAGT-T-GAATT--TACTGTAATTATTTT
blockSeqs : C ACTT T GTA C G TGCA G CTG G T C ATA TG G TA TG TTT
blockSeqs : . T . . . . . . . . . . A AA . AC . TAA
blockSeqs : . . . . . . . . . . . . . G . C . T
blockSeqs : . . . . . . . . . . . . . T . A . .
blockSeqs : . . . . . . . . . . . . . G . A . .
blockSeqs : . . . . . . . . . . . . . G . C . .
blockSeqs : . . . . . . . . . . . . . T . C . .
blockSeqs : . . . . . . . . . . . . . A . C . .
blockSeqs : . . . . . . . . . . . . . T . A . .
blockSeqs : . . . . . . . . . . . . . G . C . .
blockSeqs : . . . . . . . . . . . . . G . C . .
blockSeqs : . . . . . . . . . . . . . A . C . .
blockSeqs : . . . . . . . . . . . . . . . C . .
blockSeqs : . . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . . . . . . T . .
blockSeqCons :
originalCons : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
finalCons : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
Alignments
lowQualScore : 11 111
lowQualScore : 2 8888 2 444 2 2 5555 2 444 2 2 2 666 22 2 444 33 111
lowQualScore : . .... . ... . . .... . ... . . . ... .. . ... .. ...
lowQualScore : 9 3333 7 444 5 5 3333 5 444 5 5 5 999 11 5 222 44 222
consensus : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
Reference ( family-969 ) : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GC---G-A-A-AT---T-GTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTTT
gi|78913 : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GT---G-A-A-AT---T-GTGCTTGGG-AAAGT-T-AAATT--TGCTG---TTATTTT
gi|78914 : TATTTT-ACTT---CAGTTT-A---CAATGGAGA-CTGTGACCCA----CTCTAT-GTCTGG-A-A-A----T-GTGCTTGGAGAAAGT-TAAAATT--TGCTGT--TTATTTT
gi|78915 : TATTTT-ACT----CAGTTT-A---CA-TGGAGA-CT-TGACCCA----CTGTAT-GT---G-A-A-AT---T-TTGCTTGGA-AAAGT-C-AAATT--TGCTG---TTATTT
gi|78916 : TATTTT-ACT----CAGTTT-A---CAATGGAGA-CT-TGAACCA----CTCTAT-GT---G-A-A-AT---T-GTGCTTGGA-AAAGT-A-AAATT--TGCTGTTTTTATTTT
gi|78917 : TATTTT-AGT----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTAT-GT---G-A-A-AT---T-GTACTTGGA-ATAGT-A-AAATG--TGCTG---TTATTTT
gi|78918 : TATTTT-TCT----CAGTTC-A---CAATGGAGA-CT-TGACCCA----CTTTAC-AC---A-A-ACAT---T--TGCTTGGA-AAAGT-C-GAATT--TGGTG---TT-TTTT
gi|78919 : TATTTC-ACT----CTGTTG-A---CAATGGAGA-CT-TGACCCATGCACTCCAT-GC---G-A-A-AA---C-TTGCTTGGA-AAAGT-C-AAATT--TATTG---TTATTTT
gi|78920 : TATTTG-ACT----CGGTTC-A---CAATGGAGA-CT-TGACCCA----CTCCAT-AC---G-ATA-ATATAT-ATGCTTGGA-AAAGT-C-GAATT--TACTG-----ATTTT
gi|78921 : TATTTT-ACT----C-GTTT-A---CAATGGAAA-CT-TGACCT-----CTCTAT-GT---G-A-A-AT---TTGTGTTTGGA-AA-GT-A-AAATT--TGCTG---TTATT
gi|78922 : TATTTT-ACT----CAGTTG-A---CAATAGACA-AT-TGGCCCA----CTCTAT-AC---G-A-A-AT---T-TTGCTTCGA-AAAGT-C-GAATT--TACTA---ACATTTT
gi|78923 : TATTTT-TCT----TAGTTC-A---TAATGGAGA-CT-TGACCCA----CTCCAT-AC---G-A-A-AT---T-GTGCGCTGA-AAAGT-C-AAATT--TACAT---TTATT
gi|78924 : TATTTTCACT----CAGCTT-AGTACATGGGAGA-CT-TGACCCA----CT-TAT-TC---GGA-A-AT---T--TGCTTG-A-AAAGT-C-AAATT--TACTG---GTATTTT
gi|78925 : ATTTT-ACTACTTCAGTTT-A---CAATGGAGA-CT-TGACC------CTCTAT-GT---G-A-A-ATA--TAATGCTTGGT-AACGTAC-AATTT--TGCTG---TTATTTT
gi|78926 : TTT-ACT----CAGTTTTA---CAATGGAGACCT-TGACCCA----CTC-ATGGT---G-A-A-AT---T--TGCTTGGA-AAAGT-C-AAATTTGTGCTG---TTATT
gi|78927 : ----CAGTTT-A---CAATGGAGA-CT-TGACCCA----CTCTGT-AT---G-A-A-AT---T-GTGCTTGGA-AAAGT-A-AAATT--TATTG---TTATTTT
gi|78928 : ---CAATGAAGA-CT-TGGCCCA----CTCCAT-AC---G-G-A-AA---T-ATGTTCGGA-AAAGT-T-GAATT--TACTGTAATTATTTT