lowQualScore : 33333
lowQualScore : 2 555 2 8 77 5 5 2 3 44 11111 666
lowQualScore : . ... . . .. . . . . .. ..... ...
lowQualScore : 9 000 9 0 33 3 3 9 1 11 99999 444
consensus : AAACAAG-TAAT---AGCTTTC-CAAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG-N---AATAA---GTACTT
Reference ( gi|117358 ) : AAACAAG-TAAT---AGCTTTC-CAAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG-A---AATAA---GTACTT
gi|117359 : AAACAAG-TAAT---AGCTTTC-CAAAAAAGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-TCG-A---AATAA---GTATTT
gi|117360 : AAACAAG-TAAT---AGCTTTCACAAAA-AGCTT--GCCTGAC-TAAAC--AATTT-C--TTCA-CTG-A---AATAA---GTACTT
gi|117361 : AAACAAG-TAAT---AGCTTTC-CAAAAAAGCTT--GCCTGAC-T-AAC-AAATTT-C-TTTCATCTG-A---AATAA---GTATTT
gi|117357 : AAACAAG-TAAC---AGCTTTC-CAAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-TTCCA-TTG-T---AATCA---GTACTT
gi|117362 : AGACAAG-TAAC---AGCTTTC-TAAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-GTCCA-CTG-T---AATCA---CTACTT
gi|117364 : AAACAAG-TAAT---AACTTTC-CAAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTTAATGA---GTA
gi|117363 : AAACAAG-TAAT---AACTTTC-CAAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTTAATGA---GTA
gi|117365 : AACAAACTGAA---AGCTTTC-CAAAA-CGCTT--GCATGAC-TAAAC-AAATTT-CTTTTCA-CTGTAAGCAATAA---GCACTT
gi|117366 : ACAAG-TAAT---AGCTTTC-CAAAA-AGCTT--GCCTGAC-TAAAC-ACATTT-C-TTTCA-ATG-
gi|117367 : ACAAG-TTAT---AGCTTTC-TAAAA-CGCTT--GCCTGAC-TATAC-AAATTT-C-TTTCA-CTG-T---ATAAA---GTACTTtattacgt
gi|117368 : CAAG-TAAT---AGCTTTC-CAAAA-AGCTT--GTCCGAC-TAAAC-AAATTT-C-TTTCA-ATG-T---ATTAA---GT
gi|117369 : CAAG-TAAT---AGCTTTC-CAAAA-TGCTT--GCCTGAC-TAAAC-AAATTTAT-TTTCA-
gi|117370 : CAAG-TAAT---AGCTTTC-CAAAAAAGCTT--GCCTGGC-TAAAC-AAATTT-atata
gi|117371 : CAAG-TAATCATAGCTTTC-CAAAA-AGCTT--GCCTGGC-TAAAC-acggcaacttcca
gi|117372 : -AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCT-CTG-T---AATAAGATGTACT
Alignments
lowQualScore : 11111
lowQualScore : 2 444 2 2 5 66 5 5 2 2 33 6666 44444 555
lowQualScore : . ... . . . .. . . . . .. .... ..... ...
lowQualScore : 7 777 7 7 0 99 0 0 7 9 00 5555 11111 444
consensus : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CT----G----TAATAA---GTACTT
Reference ( family-954 ) : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CT----G----NAATAA---GTACTT
gi|117357 : AAACAAG-TAAC---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-TTCCA-TT----G----TAATCA---GTACTT
gi|117358 : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CT----G----AAATAA---GTACTT
gi|117359 : AAACAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-TC----G----AAATAA---GTATTT
gi|117360 : AAACAAG-TAAT---AGCTTTCAC-AAAA-AGCTT--GCCTGAC-TAAAC--AATTT-C--TTCA-CT----G----AAATAA---GTACTT
gi|117361 : AAACAAG-TAAT---AGCTTTC-CAAAAA-AGCTT--GCCTGAC-T-AAC-AAATTT-C-TTTCATCT----G----AAATAA---GTATTT
gi|117362 : AGACAAG-TAAC---AGCTTTC-T-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-GTCCA-CT----G----TAATCA---CTACTT
gi|117363 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-AT----GTATTTAATGA---GTA
gi|117364 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-AT----GTATTTAATGA---GTA
gi|117365 : AACAAACTGAA---AGCTTTC-C-AAAA-CGCTT--GCATGAC-TAAAC-AAATTT-CTTTTCA-CTGTAAG----CAATAA---GCACTT
gi|117366 : ACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-ACATTT-C-TTTCA-AT----G----TATTAC---GT
gi|117367 : ACAAG-TTAT---AGCTTTC-T-AAAA-CGCTT--GCCTGAC-TATAC-AAATTT-C-TTTCA-CT----G----TATAAA---GTACTT
gi|117368 : CAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GTCCGAC-TAAAC-AAATTT-C-TTTCA-AT----G----TATTAA---GT
gi|117369 : CAAG-TAAT---AGCTTTC-C-AAAA-TGCTT--GCCTGAC-TAAAC-AAATTTAT-TTTCA-
gi|117370 : CAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGGC-TAAAC-AAATTT-atata
gi|117371 : CAAG-TAATCATAGCTTTC-C-AAAA-AGCTT--GCCTGGC-TAAAC-acggcaacttcca
gi|117372 : -AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCT-CT----G----TAATAAGATGTACT
Alignments
lowQualScore : 111111111
lowQualScore : 2 444 2 2 5 66 5 5 2 2 44 666666666 555
lowQualScore : . ... . . . .. . . . . .. ......... ...
lowQualScore : 7 777 7 7 0 99 0 0 7 9 11 666666666 444
consensus : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
Reference ( family-954 ) : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
gi|117357 : AAACAAG-TAAC---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-TTCCA-TTG----T----AATCA---GTACTT
gi|117358 : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----A----AATAA---GTACTT
gi|117359 : AAACAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-TCG----A----AATAA---GTATTT
gi|117360 : AAACAAG-TAAT---AGCTTTCAC-AAAA-AGCTT--GCCTGAC-TAAAC--AATTT-C--TTCA-CTG----A----AATAA---GTACTT
gi|117361 : AAACAAG-TAAT---AGCTTTC-CAAAAA-AGCTT--GCCTGAC-T-AAC-AAATTT-C-TTTCATCTG----A----AATAA---GTATTT
gi|117362 : AGACAAG-TAAC---AGCTTTC-T-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-GTCCA-CTG----T----AATCA---CTACTT
gi|117363 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTT----AATGA---GTA
gi|117364 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTT----AATGA---GTA
gi|117365 : AACAAACTGAA---AGCTTTC-C-AAAA-CGCTT--GCATGAC-TAAAC-AAATTT-CTTTTCA-CTG----TAAGCAATAA---GCACTT
gi|117366 : ACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-ACATTT-C-TTTCA-ATG----T----ATTAC---GT
gi|117367 : ACAAG-TTAT---AGCTTTC-T-AAAA-CGCTT--GCCTGAC-TATAC-AAATTT-C-TTTCA-CTG----T----ATAAA---GTACTT
gi|117368 : CAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GTCCGAC-TAAAC-AAATTT-C-TTTCA-ATG----T----ATTAA---GT
gi|117369 : CAAG-TAAT---AGCTTTC-C-AAAA-TGCTT--GCCTGAC-TAAAC-AAATTTAT-TTTCA-ATA----T----A
gi|117370 : CAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGGC-TAAAC-AAATTT-
gi|117371 : CAAG-TAATCATAGCTTTC-C-AAAA-AGCTT--GCCTGGC-TAAAC-acggcaacttcca
gi|117372 : -AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCT-CTG----T----AATAAGATGTACT
Alignments
lowQualScore : 111111111
lowQualScore : 2 444 2 2 5 66 5 5 2 2 44 666666666 555
lowQualScore : . ... . . . .. . . . . .. ......... ...
lowQualScore : 7 777 7 7 0 99 0 0 7 9 11 666666666 444
consensus : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
Reference ( family-954 ) : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
gi|117357 : AAACAAG-TAAC---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-TTCCA-TTG----T----AATCA---GTACTT
gi|117358 : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----A----AATAA---GTACTT
gi|117359 : AAACAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-TCG----A----AATAA---GTATTT
gi|117360 : AAACAAG-TAAT---AGCTTTCAC-AAAA-AGCTT--GCCTGAC-TAAAC--AATTT-C--TTCA-CTG----A----AATAA---GTACTT
gi|117361 : AAACAAG-TAAT---AGCTTTC-CAAAAA-AGCTT--GCCTGAC-T-AAC-AAATTT-C-TTTCATCTG----A----AATAA---GTATTT
gi|117362 : AGACAAG-TAAC---AGCTTTC-T-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-GTCCA-CTG----T----AATCA---CTACTT
gi|117363 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTT----AATGA---GTA
gi|117364 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTT----AATGA---GTA
gi|117365 : AACAAACTGAA---AGCTTTC-C-AAAA-CGCTT--GCATGAC-TAAAC-AAATTT-CTTTTCA-CTG----TAAGCAATAA---GCACTT
gi|117366 : ACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-ACATTT-C-TTTCA-ATG----T----ATTAC---GT
gi|117367 : ACAAG-TTAT---AGCTTTC-T-AAAA-CGCTT--GCCTGAC-TATAC-AAATTT-C-TTTCA-CTG----T----ATAAA---GTACTT
gi|117368 : CAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GTCCGAC-TAAAC-AAATTT-C-TTTCA-ATG----T----ATTAA---GT
gi|117369 : CAAG-TAAT---AGCTTTC-C-AAAA-TGCTT--GCCTGAC-TAAAC-AAATTTAT-TTTCA-ATA----T----A
gi|117370 : CAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGGC-TAAAC-AAATTT-
gi|117371 : CAAG-TAATCATAGCTTTC-C-AAAA-AGCTT--GCCTGGC-TAAAC-acggcaacttcca
gi|117372 : -AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCT-CTG----T----AATAAGATGTACT
blockSeqs : C CAT A A A TA T T A T TC TATTT GAT
blockSeqs : . . . . A TA T T . . C TATTT .
blockSeqs : . . . . . . . . . . T TAAGC .
blockSeqs : . . . . . . . . . . C A .
blockSeqs : . . . . . . . . . . C A .
blockSeqs : . . . . . . . . . . A A .
blockSeqs : . . . . . . . . . . A A .
blockSeqs : . . . . . . . . . . C T .
blockSeqs : . . . . . . . . . . A T .
blockSeqs : . . . . . . . . . . C T .
blockSeqs : . . . . . . . . . . A T .
blockSeqs : . . . . . . . . . . A T .
blockSeqs : . . . . . . . . . . C T
blockSeqs : . . . . . . . . .
blockSeqs : . . . .
blockSeqCons :
originalCons : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
finalCons : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
Alignments
lowQualScore : 111111111
lowQualScore : 2 444 2 2 5 66 5 5 2 2 44 666666666 555
lowQualScore : . ... . . . .. . . . . .. ......... ...
lowQualScore : 7 777 7 7 0 99 0 0 7 9 11 666666666 444
consensus : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
Reference ( family-954 ) : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----T----AATAA---GTACTT
gi|117357 : AAACAAG-TAAC---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-TTCCA-TTG----T----AATCA---GTACTT
gi|117358 : AAACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-CTG----A----AATAA---GTACTT
gi|117359 : AAACAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCA-TCG----A----AATAA---GTATTT
gi|117360 : AAACAAG-TAAT---AGCTTTCAC-AAAA-AGCTT--GCCTGAC-TAAAC--AATTT-C--TTCA-CTG----A----AATAA---GTACTT
gi|117361 : AAACAAG-TAAT---AGCTTTC-CAAAAA-AGCTT--GCCTGAC-T-AAC-AAATTT-C-TTTCATCTG----A----AATAA---GTATTT
gi|117362 : AGACAAG-TAAC---AGCTTTC-T-AAAA-AGCTT--GCCTGAC-TAAAC-AAATCT-C-GTCCA-CTG----T----AATCA---CTACTT
gi|117363 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTT----AATGA---GTA
gi|117364 : AAACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCCTGACTTAAACTAAATTG-C-TTTCA-ATGTATTT----AATGA---GTA
gi|117365 : AACAAACTGAA---AGCTTTC-C-AAAA-CGCTT--GCATGAC-TAAAC-AAATTT-CTTTTCA-CTG----TAAGCAATAA---GCACTT
gi|117366 : ACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCCTGAC-TAAAC-ACATTT-C-TTTCA-ATG----T----ATTAC---GT
gi|117367 : ACAAG-TTAT---AGCTTTC-T-AAAA-CGCTT--GCCTGAC-TATAC-AAATTT-C-TTTCA-CTG----T----ATAAA---GTACTT
gi|117368 : CAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GTCCGAC-TAAAC-AAATTT-C-TTTCA-ATG----T----ATTAA---GT
gi|117369 : CAAG-TAAT---AGCTTTC-C-AAAA-TGCTT--GCCTGAC-TAAAC-AAATTTAT-TTTCA-ATA----T----A
gi|117370 : CAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCCTGGC-TAAAC-AAATTT-
gi|117371 : CAAG-TAATCATAGCTTTC-C-AAAA-AGCTT--GCCTGGC-TAAAC-acggcaacttcca
gi|117372 : -AGCTT--GCCTGAC-TAAAC-AAATTT-C-TTTCT-CTG----T----AATAAGATGTACT