lowQualScore : 3 2 5 2 66666 2 2 0 888
lowQualScore : . . . . ..... . . . ...
lowQualScore : 6 5 0 5 22222 5 5 2 111
consensus : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT--TTGTATATA
Reference ( gi|29953 ) : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGTAA-----GA-AC-TTGTATCCAATCCAT--CTGTATATA
gi|29955 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTCCAA-----AA-AC-TTGTATCCAATCCAT--TTGTATATA
gi|29954 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTACCCTATCCAT--TTGTATATA
gi|29956 : GTAT-ATTGGAGAGG-A-TTATT-AAGCTGTAA-----GA-AC-TTGTGTCCAATCCAT--TTGTATA
gi|29958 : GTAT-ATTGGAGAGG-A-TTATT-AAGTTGTAA-----GA-ACTTTGTGT-CAATCCAT--TTGTATATA
gi|29957 : GTAT-ATTGGATAGG-A-TCATT-AAGCTGCAA-----GA-AC-TTGTATCCAATCCAT--TCATA-ATA
gi|29959 : GTATTATTGGAGAGG-C-TTATT-AAGTTGTAA-----G--AC-TTGTGTCCAATCCATTGCT-TATATA
gi|29960 : GTAT-ATCGGGAAGG-G-TCGAT-AAGTTGTAA-----GA-AC-TTTTAT-CAATCCTT--TTGCATGTAta
gi|29961 : AT-AGTGCAGACG-A-TCATT-AAGTAACAA-----GA-AC-TAGTATCCAATCCAT--GTGTATTTA
gi|29962 : AT-CTTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-ATATA-------CAT--TTGTATATA
gi|29963 : T-ATTGAAGAGG-A-TCATT-AAGTT-CAA-----AC-AC-TTGTATCC-ATCCAT--TTGTGTATA
gi|29964 : T-ATTGAAGAGG-A--CATT-AAGTTCCAA-----AACAC-TTGTATCC-ATCCAT--TTGTGTATA
gi|29965 : GGAGAGG-AGCCAGT-AAGTTGTAA-----GA-AC-CTGTCTCCAATCCAT--TTG
gi|29968 : GGAGAGGGA-CCAGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATC
gi|29967 : GGAGAGG-A-TTATTCAAGTTTTG------GA-AC-TTGTATCCAATCCTT--TTGTCTAaagttg
gi|29966 : GGGGGGG-G-TCATT-AAG--GAGAGGATCGA-AC-TTGTATCCAATCCAT--TTGTATAT
gi|29969 : GAGAGG-AGCCGGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATCCAT--CTG
Alignments
lowQualScore : 3 2 4 2 55555 2 2 444
lowQualScore : . . . . ..... . . ...
lowQualScore : 3 4 7 4 99999 4 4 111
consensus : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
Reference ( family-950 ) : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
gi|29953 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGTAA-----GA-AC-TTGTATCCAATCCAT---CTGTATATA
gi|29954 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTACCCTATCCAT---TTGTATATA
gi|29955 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTCCAA-----AA-AC-TTGTATCCAATCCAT---TTGTATATA
gi|29956 : GTAT-ATTGGAGAGG-A-TTATT-AAGCTGTAA-----GA-AC-TTGTGTCCAATCCAT---TTGTATA
gi|29957 : GTAT-ATTGGATAGG-A-TCATT-AAGCTGCAA-----GA-AC-TTGTATCCAATCCAT---TCATA-ATA
gi|29958 : GTAT-ATTGGAGAGG-A-TTATT-AAGTTGTAA-----GA-ACTTTGTGT-CAATCCAT---TTGTATATA
gi|29959 : GTATTATTGGAGAGG-C-TTATT-AAGTTGTAA-----G--AC-TTGTGTCCAATCCATTGCTTATATATA
gi|29960 : GTAT-ATCGGGAAGG-G-TCGAT-AAGTTGTAA-----GA-AC-TTTTAT-CAATCCTT---TTGCATGTA
gi|29961 : AT-AGTGCAGACG-A-TCATT-AAGTAACAA-----GA-AC-TAGTATCCAATCCAT---GTGTATTTA
gi|29962 : AT-CTTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-ATATA-------CAT---TTGTATATA
gi|29963 : T-ATTGAAGAGG-A-TCATT-AAGTT-CAA-----AC-AC-TTGTATCC-ATCCAT---TTGTGTATA
gi|29964 : T-ATTGAAGAGG-A--CATT-AAGTTCCAA-----AACAC-TTGTATCCA-TCCAT---TTGTGTATA
gi|29965 : GGAGAGG-AGCCAGT-AAGTTGTAA-----GA-AC-CTGTCTCCAATCCAT---TTG
gi|29966 : GGGGGGG-G-TCATT-AAG--GAGAGGATCGA-AC-TTGTATCCAATCCAT---TTGTATAT
gi|29967 : GGAGAGG-A-TTATTCAAGTTTTG------GA-AC-TTGTATCCAATCCTT---TTGTCTA
gi|29968 : GGAGAGGGA-CCAGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATCAAG---TTG
gi|29969 : GAGAGG-AGCCGGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATCCAT---CTG
Alignments
lowQualScore : 3 2 4 2 55555 2 2 444
lowQualScore : . . . . ..... . . ...
lowQualScore : 3 4 7 4 99999 4 4 111
consensus : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
Reference ( family-950 ) : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
gi|29953 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGTAA-----GA-AC-TTGTATCCAATCCAT---CTGTATATA
gi|29954 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTACCCTATCCAT---TTGTATATA
gi|29955 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTCCAA-----AA-AC-TTGTATCCAATCCAT---TTGTATATA
gi|29956 : GTAT-ATTGGAGAGG-A-TTATT-AAGCTGTAA-----GA-AC-TTGTGTCCAATCCAT---TTGTATA
gi|29957 : GTAT-ATTGGATAGG-A-TCATT-AAGCTGCAA-----GA-AC-TTGTATCCAATCCAT---TCATA-ATA
gi|29958 : GTAT-ATTGGAGAGG-A-TTATT-AAGTTGTAA-----GA-ACTTTGTGT-CAATCCAT---TTGTATATA
gi|29959 : GTATTATTGGAGAGG-C-TTATT-AAGTTGTAA-----G--AC-TTGTGTCCAATCCATTGCTTATATATA
gi|29960 : GTAT-ATCGGGAAGG-G-TCGAT-AAGTTGTAA-----GA-AC-TTTTAT-CAATCCTT---TTGCATGTA
gi|29961 : AT-AGTGCAGACG-A-TCATT-AAGTAACAA-----GA-AC-TAGTATCCAATCCAT---GTGTATTTA
gi|29962 : AT-CTTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-ATATA-------CAT---TTGTATATA
gi|29963 : T-ATTGAAGAGG-A-TCATT-AAGTT-CAA-----AC-AC-TTGTATCC-ATCCAT---TTGTGTATA
gi|29964 : T-ATTGAAGAGG-A--CATT-AAGTTCCAA-----AACAC-TTGTATCCA-TCCAT---TTGTGTATA
gi|29965 : GGAGAGG-AGCCAGT-AAGTTGTAA-----GA-AC-CTGTCTCCAATCCAT---TTG
gi|29966 : GGGGGGG-G-TCATT-AAG--GAGAGGATCGA-AC-TTGTATCCAATCCAT---TTGTATAT
gi|29967 : GGAGAGG-A-TTATTCAAGTTTTG------GA-AC-TTGTATCCAATCCTT---TTGTCTA
gi|29968 : GGAGAGGGA-CCAGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATCAAG---TTG
gi|29969 : GAGAGG-AGCCGGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATCCAT---CTG
blockSeqs : T G G C GGATC C T TGC
blockSeqs : . . G . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
finalCons : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
Alignments
lowQualScore : 3 2 4 2 55555 2 2 444
lowQualScore : . . . . ..... . . ...
lowQualScore : 3 4 7 4 99999 4 4 111
consensus : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
Reference ( family-950 ) : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTATCCAATCCAT---TTGTATATA
gi|29953 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGTAA-----GA-AC-TTGTATCCAATCCAT---CTGTATATA
gi|29954 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-TTGTACCCTATCCAT---TTGTATATA
gi|29955 : GTAT-ATTGGAGAGG-A-TCATT-AAGTTCCAA-----AA-AC-TTGTATCCAATCCAT---TTGTATATA
gi|29956 : GTAT-ATTGGAGAGG-A-TTATT-AAGCTGTAA-----GA-AC-TTGTGTCCAATCCAT---TTGTATA
gi|29957 : GTAT-ATTGGATAGG-A-TCATT-AAGCTGCAA-----GA-AC-TTGTATCCAATCCAT---TCATA-ATA
gi|29958 : GTAT-ATTGGAGAGG-A-TTATT-AAGTTGTAA-----GA-ACTTTGTGT-CAATCCAT---TTGTATATA
gi|29959 : GTATTATTGGAGAGG-C-TTATT-AAGTTGTAA-----G--AC-TTGTGTCCAATCCATTGCTTATATATA
gi|29960 : GTAT-ATCGGGAAGG-G-TCGAT-AAGTTGTAA-----GA-AC-TTTTAT-CAATCCTT---TTGCATGTA
gi|29961 : AT-AGTGCAGACG-A-TCATT-AAGTAACAA-----GA-AC-TAGTATCCAATCCAT---GTGTATTTA
gi|29962 : AT-CTTGGAGAGG-A-TCATT-AAGTTGCAA-----GA-AC-ATATA-------CAT---TTGTATATA
gi|29963 : T-ATTGAAGAGG-A-TCATT-AAGTT-CAA-----AC-AC-TTGTATCC-ATCCAT---TTGTGTATA
gi|29964 : T-ATTGAAGAGG-A--CATT-AAGTTCCAA-----AACAC-TTGTATCCA-TCCAT---TTGTGTATA
gi|29965 : GGAGAGG-AGCCAGT-AAGTTGTAA-----GA-AC-CTGTCTCCAATCCAT---TTG
gi|29966 : GGGGGGG-G-TCATT-AAG--GAGAGGATCGA-AC-TTGTATCCAATCCAT---TTGTATAT
gi|29967 : GGAGAGG-A-TTATTCAAGTTTTG------GA-AC-TTGTATCCAATCCTT---TTGTCTA
gi|29968 : GGAGAGGGA-CCAGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATCAAG---TTG
gi|29969 : GAGAGG-AGCCGGT-AAGTTGTAA-----GA-AC-TTGTCTCCAATCCAT---CTG