lowQualScore : 111
lowQualScore : 2 2 2 2 2 2 777 2 2 2 2 6
lowQualScore : . . . . . . ... . . . . .
lowQualScore : 7 5 5 5 5 5 999 5 7 7 9 0
consensus : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
Reference ( gi|29669 ) : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-G-GC-GAT-A-AATCAACGTTCTG-TACAAGT
gi|29670 : GCGACGTT-AAG-GAA-GCCTACATT-AAT-A-TAAT-T-GC-GAT-A-AATCAACGTTCTG-TACAAA
gi|29671 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAAATTTCTG-TACAAA
gi|29672 : GCGACGTT-AAA-GAA-GCCTGCGTT-AATTA-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAA
gi|29674 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29673 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29675 : GCAACGTT-AGG-GAA-GCCTCCATT-AAT-A-TAAA-T-GC-GAT-A-AATCAACGTTCCG-TACAAA
gi|29676 : GCGACGTT-AAG-GAA-GCTTGCATT-GAT-A-TAAG-T-GG-TAT-A-AATTAACGTTCTG-TACAAA
gi|29677 : GCAACGTT-AAG-GAA-GCCTGTATT-AAT-T-TAAG-T-GC-TAT-A-AATCAACCTTCTG-TACAA
gi|29678 : GCGA-GTT-AAG-GAA-GCCTGC-TT-AAT-A-TAAG-T-GC-GAT-A-AA-CAACGTT
gi|29680 : GCGACGTTTAAG-GAA-GCATGCATTAAAT-A-TAAG-ATGC-TAT-A-ATTCAACGTTCTA-GACAA
gi|29679 : GCGACGT--AAGTGAA-GCGTGCATT-AAT-A---AG-T-GT-GAT-A-AATCAACGTTCTG-T
gi|29681 : GCGACGTT-AAG-GAA-TCCTGCATT-AAT-A-TAAG-T-GC-
gi|29682 : GCTACGT--AAG-GAA-GCCTGCATT-AAT-ATTAAG-T-GCTGAT----CTTCACGCCCTGTTACAAA
gi|29683 : CGACGTT-AAG-AAA-ACCTGTATT-AAT-A-TGAG-T-GC-TGTAA-AATCAACGTTCCG-TACA
gi|29684 : TT-AAG-GAAAGCCTGCGTT-AAA-A-TAAGTG-GC-AAT-ATAATCAAC-TCCTG-TACAAcat
gi|29685 : -GAA-TCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AAACAACGTT-TG-AATAAAa
Alignments
lowQualScore : 2 2 2 2 2 2 2 2 2 2 2 2
lowQualScore : . . . . . . . . . . . .
lowQualScore : 5 4 4 4 4 4 4 4 4 5 5 7
consensus : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
Reference ( family-948 ) : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29669 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-G-GC-GAT-A-AATCAACGTTCTG-TACAAGT
gi|29670 : GCGACGTT-AAG-GAA-GCCTACATT-AAT-A-TAAT-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29671 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAAATTTCTG-TACAAAT
gi|29672 : GCGACGTT-AAA-GAA-GCCTGCGTT-AATTA-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29673 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29674 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29675 : GCAACGTT-AGG-GAA-GCCTCCATT-AAT-A-TAAA-T-GC-GAT-A-AATCAACGTTCCG-TACAAAT
gi|29676 : GCGACGTT-AAG-GAA-GCTTGCATT-GAT-A-TAAG-T-GG-TAT-A-AATTAACGTTCTG-TACAAAT
gi|29677 : GCAACGTT-AAG-GAA-GCCTGTATT-AAT-T-TAAG-T-GC-TAT-A-AATCAACCTTCTG-TACAA
gi|29678 : GCGA-GTT-AAG-GAA-GCCTGC-TT-AAT-A-TAAG-T-GC-GAT-A-AA-CAACGTT
gi|29679 : GCGACGT--AAGTGAA-GCGTGCATT-AAT-A---AG-T-GT-GAT-A-AATCAACGTTCTG-
gi|29680 : GCGACGTTTAAG-GAA-GCATGCATTAAAT-A-TAAGAT-GC-TAT-A-ATTCAACGTTCTA-GACAA
gi|29681 : GCGACGTT-AAG-GAA-TCCTGCATT-AAT-A-TAAG-T-GC-
gi|29682 : GCTACGT--AAG-GAA-GCCTGCATT-AAT-ATTAAG-T-GCTGAT----CTTCACGCCCTGTTACAAAT
gi|29683 : CGACGTT-AAG-AAA-ACCTGTATT-AAT-A-TGAG-T-GC-TGTAA-AATCAACGTTCCG-TACACAT
gi|29684 : TT-AAG-GAAAGCCTGCGTT-AAA-A-TAAG-TGGC-AAT-ATAATCAAC-TCCTG-TACAAA
gi|29685 : -GAA-TCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AAACAACGTT-TG-AATAAAT
Alignments
lowQualScore : 2 2 2 2 2 2 2 2 2 2 2 2
lowQualScore : . . . . . . . . . . . .
lowQualScore : 5 4 4 4 4 4 4 4 4 5 5 7
consensus : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
Reference ( family-948 ) : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29669 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-G-GC-GAT-A-AATCAACGTTCTG-TACAAGT
gi|29670 : GCGACGTT-AAG-GAA-GCCTACATT-AAT-A-TAAT-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29671 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAAATTTCTG-TACAAAT
gi|29672 : GCGACGTT-AAA-GAA-GCCTGCGTT-AATTA-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29673 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29674 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29675 : GCAACGTT-AGG-GAA-GCCTCCATT-AAT-A-TAAA-T-GC-GAT-A-AATCAACGTTCCG-TACAAAT
gi|29676 : GCGACGTT-AAG-GAA-GCTTGCATT-GAT-A-TAAG-T-GG-TAT-A-AATTAACGTTCTG-TACAAAT
gi|29677 : GCAACGTT-AAG-GAA-GCCTGTATT-AAT-T-TAAG-T-GC-TAT-A-AATCAACCTTCTG-TACAA
gi|29678 : GCGA-GTT-AAG-GAA-GCCTGC-TT-AAT-A-TAAG-T-GC-GAT-A-AA-CAACGTT
gi|29679 : GCGACGT--AAGTGAA-GCGTGCATT-AAT-A---AG-T-GT-GAT-A-AATCAACGTTCTG-
gi|29680 : GCGACGTTTAAG-GAA-GCATGCATTAAAT-A-TAAGAT-GC-TAT-A-ATTCAACGTTCTA-GACAA
gi|29681 : GCGACGTT-AAG-GAA-TCCTGCATT-AAT-A-TAAG-T-GC-
gi|29682 : GCTACGT--AAG-GAA-GCCTGCATT-AAT-ATTAAG-T-GCTGAT----CTTCACGCCCTGTTACAAAT
gi|29683 : CGACGTT-AAG-AAA-ACCTGTATT-AAT-A-TGAG-T-GC-TGTAA-AATCAACGTTCCG-TACACAT
gi|29684 : TT-AAG-GAAAGCCTGCGTT-AAA-A-TAAG-TGGC-AAT-ATAATCAAC-TCCTG-TACAAA
gi|29685 : -GAA-TCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AAACAACGTT-TG-AATAAAT
blockSeqs : T T A A T T A G T A T T
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons :
originalCons : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
finalCons : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
Alignments
lowQualScore : 2 2 2 2 2 2 2 2 2 2 2 2
lowQualScore : . . . . . . . . . . . .
lowQualScore : 5 4 4 4 4 4 4 4 4 5 5 7
consensus : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
Reference ( family-948 ) : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29669 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-G-GC-GAT-A-AATCAACGTTCTG-TACAAGT
gi|29670 : GCGACGTT-AAG-GAA-GCCTACATT-AAT-A-TAAT-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29671 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AATCAAATTTCTG-TACAAAT
gi|29672 : GCGACGTT-AAA-GAA-GCCTGCGTT-AATTA-TAAG-T-GC-GAT-A-AATCAACGTTCTG-TACAAAT
gi|29673 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29674 : GCGACGTT-AAG-GAA-GCCTGCATT-AAT-A-CAAG-T-GC-GAT-A-AATCAACTTTCTG-TAC
gi|29675 : GCAACGTT-AGG-GAA-GCCTCCATT-AAT-A-TAAA-T-GC-GAT-A-AATCAACGTTCCG-TACAAAT
gi|29676 : GCGACGTT-AAG-GAA-GCTTGCATT-GAT-A-TAAG-T-GG-TAT-A-AATTAACGTTCTG-TACAAAT
gi|29677 : GCAACGTT-AAG-GAA-GCCTGTATT-AAT-T-TAAG-T-GC-TAT-A-AATCAACCTTCTG-TACAA
gi|29678 : GCGA-GTT-AAG-GAA-GCCTGC-TT-AAT-A-TAAG-T-GC-GAT-A-AA-CAACGTT
gi|29679 : GCGACGT--AAGTGAA-GCGTGCATT-AAT-A---AG-T-GT-GAT-A-AATCAACGTTCTG-
gi|29680 : GCGACGTTTAAG-GAA-GCATGCATTAAAT-A-TAAGAT-GC-TAT-A-ATTCAACGTTCTA-GACAA
gi|29681 : GCGACGTT-AAG-GAA-TCCTGCATT-AAT-A-TAAG-T-GC-
gi|29682 : GCTACGT--AAG-GAA-GCCTGCATT-AAT-ATTAAG-T-GCTGAT----CTTCACGCCCTGTTACAAAT
gi|29683 : CGACGTT-AAG-AAA-ACCTGTATT-AAT-A-TGAG-T-GC-TGTAA-AATCAACGTTCCG-TACACAT
gi|29684 : TT-AAG-GAAAGCCTGCGTT-AAA-A-TAAG-TGGC-AAT-ATAATCAAC-TCCTG-TACAAA
gi|29685 : -GAA-TCCTGCATT-AAT-A-TAAG-T-GC-GAT-A-AAACAACGTT-TG-AATAAAT