lowQualScore : 222222222222222 1 111 2 1 1 111
lowQualScore : 4 888 4 66 4 4 77 66 4 0 0 55 5 3 222222222222222 3 66 3 22 8888888 8 5 2 33 444 0 2 2 2 444 2 0 1 2 3 555 33
lowQualScore : . ... . .. . . .. .. . . . .. . . ............... . .. . .. ....... . . . .. ... . . . . ... . . . . . ... ..
lowQualScore : 4 000 4 11 4 4 11 11 4 9 7 00 5 1 000000000000000 1 55 1 22 2222222 0 9 9 00 777 3 7 7 7 999 7 9 6 9 2 666 99
consensus : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCG-CTTTGGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-CTTTACGGTG--------------AA-AAN-T-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTC--CT--ATACTTCTTA
Reference ( gi|3083 ) : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCG-TTTTGGTGGAGGGTC--TA-TCATTGTTTGTGACGGTGTGTTTCG--ATAG-TTTTACGGTG--------------AA-AAC-T-GGACCAATT-G-T---TGGCTTGTGAGCATGAAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--AAAA-ATGTGCACCCTA-TGATCAGTC--AT--ATACTTCTTA
gi|3084 : AAA-ATGAA--CGAGATC-AGGAATGTTGC--GTTGCTGG-GCATAATCG-CTTTGGTGGAGGGTC--TA-TCGTTGTTTGTGACGGTGTGTTTCA--ATAG-CTTTACGGCG--------------AA-AAC-T-GGACCAATT-G-T---TGGTTTGTGGGCATGCAAATTT-ACC-ACATGAAGCCCAACTCTT---AACG-TAC-GAG-T--AACA-ATATGCACCCCA-TGATCATTC--CT--ATACTTCTTA
gi|3086 : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATACTCA-TTTTGGTGGAGGGTC--TA-TCATTGTTTTGGACGGTGT-TTTTG--ATCG-TTTTACGGTG--------------TA-AAC-T-GGA-CAATTGG-T---TGGCTTGTGGGCATACAAATTT-ACC-GCATGAAGCCCATCTCTT---TACG-T-C-GAG-T--AAAA-ATGTGCACCC-A-TGATCATTC--CT--ATACTTCTTAtt
gi|3085 : AAA-ATGAA--CGATATC-AGTAATATTGC--ATTGCTGA-GCATAATCG-CTTTGGTTGACGGCC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-CTTTACAGTG--------------AA-AAG-T-GGACCAATT-G-T---TGGCTTGTGGGTATGCAATTTT-ACC-GCATGAAGCCCATCTCTT---AACG-CCT-GAG-TG-GAAA-AT-TGCACCCCA-TTATCATTC--CT--ATACTTCTTAtt
gi|3087 : AAA-ATGAA--TTATATC-AGTAATGTTGC--ATAGCGGA-TCATACTCA-CTTTGGTGGAGGGTC--TA-TCATTGTTTGCGACAGTGTGTTTCG--ATGG-CTTTACGGTG--------------AA-AAG-T-GGACCAATT-G-T---TGGCTTGTGGGTATGCCAATTT-ACA-GCATGAAGCCCATTTCCT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TAATAATTC--CT--ATACTTCTTAtt
gi|3088 : AAA-ATGAA--CGATATC-AGCAATGTTGC--AT-----------AATCG-CTTTGGTGGAGGGCC--TG-TCATTGTTTGCGGCGGTGTGTTTCG--ATGG-CTTCACGGTG--------------AA-AGG-T-GGACCAATT-G-T---TGGCTTGTGGCTATGCAAATTT-ACC-GTATGACATCCATCTTTT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TGATCATTC--CTAAATACTTCTTAtt
gi|3089 : AAA-ATGA---CGATATC-AGGAATGTTGC---TTGCTGA-GCATA-TCGCTTTTGGTGGAGGGT---TA--CATTGTTTGTGA-GGTGTGTT-CG--CTAG-TTTTACGGTG--------------CA-AAC-T-GGACAAATT-GAT---TGGCCTTTG-GCATGCAGA-TT-A-C-GCATGTAGCCCATTTCTT---AA-G-TCC-GAG-T--AAAA-ATGTGTACCC-A-CGATCATTCCAAT---TACTTCTTtt
gi|3090 : AAA-ATGAAAACGATATCCAGGGATGTTGTGTATTGCTGA-GCATACTCG-CTTTGGT-AAGGGTC--TATTCATTGTTTTTGAGTGTGTTTTTCG--ATAGTTTTTACGGT---------------AA-AAC-T-GGACCAATT---T---TGGC-TGTGGACATTCAAAATT-AC----------CCCATCTCTT---AATG-TCC-GAG-T--GAAA-A-GTATACCCCA-TG-TCAGTT--CT--ATACTTCTTA
gi|3091 : AAA-ATGA---CGATATA-AGGAATGGTGC--ATTGCTGAAGCATAATCG-CTTTGGTGGAGGGTCGGGA-TAATTTTTTGTGACGGTGTTTTTTGAAATTT-TTTTACGGGGGGGGCGGGGCCGAAAA-AAC-TGGGACCCATT-G-T------CTTGTGGGCATGTACATTT-ACCGGCATGAAG-CCATCTTTT---ATCG-T-C-GAG-T--AAAATAT-TGCACGCCATTGATCACTC--A-----ACTTCTTAtt
gi|3092 : AAATATGAA--CGATATA-AGGAATGTTGC--ATTGCTGA-GCATAATCA-CTTTGGTGGAGGACC--TA-TCATTGTTTGCGAAATTGTGTTT-A--ATGG-CTTTt
gi|3094 : GCGAC--TGTGTTTCG--ATGG-CTTTACGGTA--------------AA-AAG-T-GGACCAATT-G-T---TGGCTTGTGAGTATGCACATTT-ACC-GCACGAAGCCCTTCTCTT---AACG-TCT-GAA-TG-GAAA-AT-TGCACCCCG-TGATCATTC--CT--ATACTTATT
gi|3096 : G--AT-G-TCTTACGGTC--------------AA-ACA-T-AGAGATATT-T-A---TGGCTTGCGCACATGTAAATTT-GCT-GCATGAAGTATATTTCTT---AATG-CCT-GAG-T--AGAA-ATTTCCACCCAG-TGATTATTA--CT--ATAC
gi|3093 : AG-CTTTATGATGT-------------CA-AACAT-AGAC--AT--G-TCCATGGCTTGTGGATATGTACATTT-ACT-GCATGAAGTCTATTTCTT---AAAG-CCT------------------CACCCCA-TGGTCATTC--CT--ATACCCCCTA
gi|3095 : catttctgagcaaaatcagtctcaaaggtgtaattgcaaatgttcatggtgtctgctaaaatcaaagcaG-TCTTACAGTC--------------AA-ACA-T-AAACATATT-C-A---TGGTTAGCAGACATGTAAATTT-GAT-GAATGTAGTCTATTTCTT---AATG-TCT-GAGCT--GAAA-GT-TACAACTCA-TGATCATTC--CT--ATACTCCCTAct
gi|3097 : gttttgtgacTTACGGTC--------------AACAAA-T-AGACATATT-C-A---TG-CTGGCGGACATGTAAATTTGAAT-GCATGTAGTCTATG-CTT---AATGGTCCTGAG-TTTGAAA-AT-CGCAACCCA-TGATCATTC--TT--ATACTct
gi|3098 : GGCTTGTGGGTATGTAAATTT-GCT-GCATGAAGTATGTTTCTTTAAAATG-TCT-GAG-T--GGAA-
gi|3099 : CC-GCATGAAGCCCATCTTTT---ATCG-TCC-GAG-T--AAAA-ATATGCACGCCA-TGATCACTC--CT--ATACTTCTTA
Alignments
lowQualScore : 222222222222222 11 1
lowQualScore : 4 666 4 55 4 3 4 55 4 44 2 33 000000000000000 2 1 2 0 6666666 2 2 444 2 2 2 55 2 3 2 33 2
lowQualScore : . ... . .. . . . .. . .. . .. ............... . . . . ....... . . ... . . . .. . . . .. .
lowQualScore : 0 333 0 55 0 1 0 55 0 22 9 99 888888888888888 9 0 9 7 2222222 7 5 444 5 5 5 99 5 3 7 77 7
consensus : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
Reference ( family-941 ) : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
gi|3083 : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGTTTT-GGTGGAGGGTC--TA-TCATTGTTTGTGACGGTGTGTTTCG--ATAG-T--TTTACGGTG--------------AA-AACT-GGACCAATT-G-T---TGGCTTGTGAGCATGAAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--AAAA-ATGTGCACCCTA-TGATCAGTCAT--A-TACTTCTTA
gi|3084 : AAA-ATGAA--CGAGATC-AGGAATGTTGC--GTTGCTGG-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCGTTGTTTGTGACGGTGTGTTTCA--ATAG-C--TTTACGGCG--------------AA-AACT-GGACCAATT-G-T---TGGTTTGTGGGCATGCAAATTT-ACC-ACATGAAGCCCAACTCTT---AACG-TAC-GAG-T--AACA-ATATGCACCCCA-TGATCATTCCT--A-TACTTCTTA
gi|3085 : AAA-ATGAA--CGATATC-AGTAATATTGC--ATTGCTGA-GCATAATCGCTTT-GGTTGACGGCC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACAGTG--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGGGTATGCAATTTT-ACC-GCATGAAGCCCATCTCTT---AACG-CCT-GAG-TG-GAAA-AT-TGCACCCCA-TTATCATTCCT--A-TACTTCTTAtt
gi|3086 : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATACTCATTTT-GGTGGAGGGTC--TA-TCATTGTTTTGGACGGTGT-TTTTG--ATCG-T--TTTACGGTG--------------TA-AACT-GGA-CAATTGG-T---TGGCTTGTGGGCATACAAATTT-ACC-GCATGAAGCCCATCTCTT---TACG-T-C-GAG-T--AAAA-ATGTGCA-CCCA-TGATCATTCCT--A-TACTTCTTAtt
gi|3087 : AAA-ATGAA--TTATATC-AGTAATGTTGC--ATAGCGGA-TCATACTCACTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACAGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGGGTATGCCAATTT-ACA-GCATGAAGCCCATTTCCT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TAATAATTCCT--A-TACTTCTTAtt
gi|3088 : AAA-ATGAA--CGATATC-AGCAATGTTGC--AT-----------AATCGCTTT-GGTGGAGGGCC--TG-TCATTGTTTGCGGCGGTGTGTTTCG--ATGG-C--TTCACGGTG--------------AA-AGGT-GGACCAATT-G-T---TGGCTTGTGGCTATGCAAATTT-ACC-GTATGACATCCATCTTTT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TGATCATTCCTAAA-TACTTCTTAtt
gi|3089 : AAA-ATGA---CGATATC-AGGAATGTTGC---TTGCTGA-GCATA-TCGCTTTTGGTGGAGGGT---TA--CATTGTTTGTGA-GGTGTGTT-CG--CTAG-T--TTTACGGTG--------------CA-AACT-GGACAAATT-GAT---TGGCCT-TTGGCATGCAGA-TT-A-C-GCATGTAGCCCATTTCTT---AA-G-TCC-GAG-T--AAAA-ATGTGTA-CCCA-CGATCATTCCA--ATTACTTCTTtt
gi|3090 : AAA-ATGAAAACGATATCCAGGGATGTTGTGTATTGCTGA-GCATACTCGCTTT-GGT-AAGGGTC--TATTCATTGTTTTTGAGTGTGTTTTTCG--ATAGTT--TTTACGGT---------------AA-AACT-GGACCAATT---T---TGGC-TGTGGACATTCAAAATT-AC----------CCCATCTCTT---AATG-TCC-GAG-T--GAAA-AG-TATACCCCA-TG-TCAGTTCT--A-TACTTCTTA
gi|3091 : AAA-ATGA---CGATATA-AGGAATGGTGC--ATTGCTGAAGCATAATCGCTTT-GGTGGAGGGTCGGGA-TAATTTTTTGTGACGGTGTTTTTTGAAATTT-T--TTTACGGGGGGGGCGGGGCCGAAAA-AACTGGGACCCATT-G-T------CTTGTGGGCATGTACATTT-ACCGGCATGAAG-CCATCTTTT---ATCG-T-C-GAG-T--AAAATAT-TGCACGCCATTGATCACTC----A--ACTTCTTAtt
gi|3092 : AAATATGAA--CGATATA-AGGAATGTTGC--ATTGCTGA-GCATAATCACTTT-GGTGGAGGACC--TA-TCATTGTTTGCGAAATTGTGTTT-A--ATGG-C--TTTt
gi|3093 : G-C--TTTATGATGTC------------AA-ACAT-AGAC--AT--G-TCCATGGCTTGTGGATATGTACATTT-ACT-GCATGAAGTCTATTTCTT---AAAG-CCT------------------CACCCCA-TGGTCATTCCT--A-TACCCCCTA
gi|3094 : catttctgagcaaaatcagtctcaaaggtgtaattgcaaatgttcatggtgtctgctaaaatcaaagcaaGCGAC--TGTGTTTCG--ATGG-C--TTTACGGTA--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGAGTATGCACATTT-ACC-GCACGAAGCCCTTCTCTT---AACG-TCT-GAA-TG-GAAA-AT-TGCACCCCG-TGATCATTCCT--A-TACTTATTct
gi|3095 : GTTTTG---TGA-CGTCTTACAGTC--------------AA-ACAT-AAACATATT-C-A---TGGTTAGCAGACATGTAAATTT-GAT-GAATGTAGTCTATTTCTT---AATG-TCT-GAGCT--GAAA-GT-TACAACTCA-TGATCATTCCT--A-TACTCCCTA
gi|3096 : G--ATGT-C--TT-ACGGTC--------------AA-ACAT-AGAGATATT-T-A---TGGCTTGCGCACATGTAAATTT-GCT-GCATGAAGTATATTTCTT---AATG-CCT-GAG-TA-GAAA-TT-TCCACCCAG-TGATTATTACT--A-TACct
gi|3097 : TTACGGTC--------------AACAAAT-AGACATATT-C-A---TG-CTGGCGGACATGTAAATTTGAAT-GCATGTAGTCTATG-CTT---AATGGTCCTGAG-TTTGAAA-AT-CGCAACCCA-TGATCATTCTT--A-TACT
gi|3098 : GGCTTGTGGGTATGTAAATTT-GCT-GCATGAAGTATGTTTCTTTAAAATG-TCT-GAG-T--GGAA-
gi|3099 : CC-GCATGAAGCCCATCTTTT---ATCG-TCC-GAG-T--AAAA-ATATGCACGCCA-TGATCACTCCT--A-TACTTCTTA
Alignments
lowQualScore : 222222222222222 11 1
lowQualScore : 4 666 4 55 4 3 4 55 4 44 2 33 000000000000000 2 1 2 0 6666666 2 2 444 2 2 2 55 2 3 2 33 2
lowQualScore : . ... . .. . . . .. . .. . .. ............... . . . . ....... . . ... . . . .. . . . .. .
lowQualScore : 0 333 0 55 0 1 0 55 0 22 9 99 888888888888888 9 0 9 7 2222222 7 5 444 5 5 5 99 5 3 7 77 7
consensus : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
Reference ( family-941 ) : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
gi|3083 : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGTTTT-GGTGGAGGGTC--TA-TCATTGTTTGTGACGGTGTGTTTCG--ATAG-T--TTTACGGTG--------------AA-AACT-GGACCAATT-G-T---TGGCTTGTGAGCATGAAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--AAAA-ATGTGCACCCTA-TGATCAGTCAT--A-TACTTCTTA
gi|3084 : AAA-ATGAA--CGAGATC-AGGAATGTTGC--GTTGCTGG-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCGTTGTTTGTGACGGTGTGTTTCA--ATAG-C--TTTACGGCG--------------AA-AACT-GGACCAATT-G-T---TGGTTTGTGGGCATGCAAATTT-ACC-ACATGAAGCCCAACTCTT---AACG-TAC-GAG-T--AACA-ATATGCACCCCA-TGATCATTCCT--A-TACTTCTTA
gi|3085 : AAA-ATGAA--CGATATC-AGTAATATTGC--ATTGCTGA-GCATAATCGCTTT-GGTTGACGGCC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACAGTG--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGGGTATGCAATTTT-ACC-GCATGAAGCCCATCTCTT---AACG-CCT-GAG-TG-GAAA-AT-TGCACCCCA-TTATCATTCCT--A-TACTTCTTAtt
gi|3086 : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATACTCATTTT-GGTGGAGGGTC--TA-TCATTGTTTTGGACGGTGT-TTTTG--ATCG-T--TTTACGGTG--------------TA-AACT-GGA-CAATTGG-T---TGGCTTGTGGGCATACAAATTT-ACC-GCATGAAGCCCATCTCTT---TACG-T-C-GAG-T--AAAA-ATGTGCA-CCCA-TGATCATTCCT--A-TACTTCTTAtt
gi|3087 : AAA-ATGAA--TTATATC-AGTAATGTTGC--ATAGCGGA-TCATACTCACTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACAGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGGGTATGCCAATTT-ACA-GCATGAAGCCCATTTCCT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TAATAATTCCT--A-TACTTCTTAtt
gi|3088 : AAA-ATGAA--CGATATC-AGCAATGTTGC--AT-----------AATCGCTTT-GGTGGAGGGCC--TG-TCATTGTTTGCGGCGGTGTGTTTCG--ATGG-C--TTCACGGTG--------------AA-AGGT-GGACCAATT-G-T---TGGCTTGTGGCTATGCAAATTT-ACC-GTATGACATCCATCTTTT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TGATCATTCCTAAA-TACTTCTTAtt
gi|3089 : AAA-ATGA---CGATATC-AGGAATGTTGC---TTGCTGA-GCATA-TCGCTTTTGGTGGAGGGT---TA--CATTGTTTGTGA-GGTGTGTT-CG--CTAG-T--TTTACGGTG--------------CA-AACT-GGACAAATT-GAT---TGGCCT-TTGGCATGCAGA-TT-A-C-GCATGTAGCCCATTTCTT---AA-G-TCC-GAG-T--AAAA-ATGTGTA-CCCA-CGATCATTCCA--ATTACTTCTTtt
gi|3090 : AAA-ATGAAAACGATATCCAGGGATGTTGTGTATTGCTGA-GCATACTCGCTTT-GGT-AAGGGTC--TATTCATTGTTTTTGAGTGTGTTTTTCG--ATAGTT--TTTACGGT---------------AA-AACT-GGACCAATT---T---TGGC-TGTGGACATTCAAAATT-AC----------CCCATCTCTT---AATG-TCC-GAG-T--GAAA-AG-TATACCCCA-TG-TCAGTTCT--A-TACTTCTTA
gi|3091 : AAA-ATGA---CGATATA-AGGAATGGTGC--ATTGCTGAAGCATAATCGCTTT-GGTGGAGGGTCGGGA-TAATTTTTTGTGACGGTGTTTTTTGAAATTT-T--TTTACGGGGGGGGCGGGGCCGAAAA-AACTGGGACCCATT-G-T------CTTGTGGGCATGTACATTT-ACCGGCATGAAG-CCATCTTTT---ATCG-T-C-GAG-T--AAAATAT-TGCACGCCATTGATCACTC----A--ACTTCTTAtt
gi|3092 : AAATATGAA--CGATATA-AGGAATGTTGC--ATTGCTGA-GCATAATCACTTT-GGTGGAGGACC--TA-TCATTGTTTGCGAAATTGTGTTT-A--ATGG-C--TTTt
gi|3093 : G-C--TTTATGATGTC------------AA-ACAT-AGAC--AT--G-TCCATGGCTTGTGGATATGTACATTT-ACT-GCATGAAGTCTATTTCTT---AAAG-CCT------------------CACCCCA-TGGTCATTCCT--A-TACCCCCTA
gi|3094 : catttctgagcaaaatcagtctcaaaggtgtaattgcaaatgttcatggtgtctgctaaaatcaaagcaaGCGAC--TGTGTTTCG--ATGG-C--TTTACGGTA--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGAGTATGCACATTT-ACC-GCACGAAGCCCTTCTCTT---AACG-TCT-GAA-TG-GAAA-AT-TGCACCCCG-TGATCATTCCT--A-TACTTATTct
gi|3095 : GTTTTG---TGA-CGTCTTACAGTC--------------AA-ACAT-AAACATATT-C-A---TGGTTAGCAGACATGTAAATTT-GAT-GAATGTAGTCTATTTCTT---AATG-TCT-GAGCT--GAAA-GT-TACAACTCA-TGATCATTCCT--A-TACTCCCTA
gi|3096 : G--ATGT-C--TT-ACGGTC--------------AA-ACAT-AGAGATATT-T-A---TGGCTTGCGCACATGTAAATTT-GCT-GCATGAAGTATATTTCTT---AATG-CCT-GAG-TA-GAAA-TT-TCCACCCAG-TGATTATTACT--A-TACct
gi|3097 : TTACGGTC--------------AACAAAT-AGACATATT-C-A---TG-CTGGCGGACATGTAAATTTGAAT-GCATGTAGTCTATG-CTT---AATGGTCCTGAG-TTTGAAA-AT-CGCAACCCA-TGATCATTCTT--A-TACT
gi|3098 : GGCTTGTGGGTATGTAAATTT-GCT-GCATGAAGTATGTTTCTTTAAAATG-TCT-GAG-T--GGAA-
gi|3099 : CC-GCATGAAGCCCATCTTTT---ATCG-TCC-GAG-T--AAAA-ATATGCACGCCA-TGATCACTCCT--A-TACTTCTTA
blockSeqs : T AAA C GT A A T GG T AA T GT GGGGGCGGGGCCGAA C C G GTCCA G G TAA G T C TT T A T AA T
blockSeqs : . A . . . A . . . . . . GTC . G . GGT . . . . . . G . G . . .
blockSeqs : . A . . . C . . . . . . G . C . GAT . . . . . . G . G . . .
blockSeqs : . A . . . C . . . . . . G . G . GT . . . . . . G . A . . .
blockSeqs : . A . . . A . . . . . . G . G . GT . . . . . . G . . . . .
blockSeqs : . A . . . C . . . . . . G . C . GT . . . . . . A . . . . .
blockSeqs : . A . . . A . . . . . . G . C . GT . . . . . . . . . . . .
blockSeqs : . . . . . A . . . . . . G . C . GT . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A . A . GT . . . . . . . . . . . .
blockSeqs : . . . C . G . CA . . . . . . . . . . . .
blockSeqs : . . . C . A . TA . . . . . . . . . . . .
blockSeqs : . . . C . A . CA . . . . . . . . . . . .
blockSeqs : . . . . A . T . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
finalCons : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
Alignments
lowQualScore : 222222222222222 11 1
lowQualScore : 4 666 4 55 4 3 4 55 4 44 2 33 000000000000000 2 1 2 0 6666666 2 2 444 2 2 2 55 2 3 2 33 2
lowQualScore : . ... . .. . . . .. . .. . .. ............... . . . . ....... . . ... . . . .. . . . .. .
lowQualScore : 0 333 0 55 0 1 0 55 0 22 9 99 888888888888888 9 0 9 7 2222222 7 5 444 5 5 5 99 5 3 7 77 7
consensus : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
Reference ( family-941 ) : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AANT-GGACCAATT-G-T---TGGCTTGTGGGCATGCAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--GAAA-AT-TGCACCCCA-TGATCATTCCT--A-TACTTCTTA
gi|3083 : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATAATCGTTTT-GGTGGAGGGTC--TA-TCATTGTTTGTGACGGTGTGTTTCG--ATAG-T--TTTACGGTG--------------AA-AACT-GGACCAATT-G-T---TGGCTTGTGAGCATGAAAATTT-ACC-GCATGAAGCCCATCTCTT---AACG-TCC-GAG-T--AAAA-ATGTGCACCCTA-TGATCAGTCAT--A-TACTTCTTA
gi|3084 : AAA-ATGAA--CGAGATC-AGGAATGTTGC--GTTGCTGG-GCATAATCGCTTT-GGTGGAGGGTC--TA-TCGTTGTTTGTGACGGTGTGTTTCA--ATAG-C--TTTACGGCG--------------AA-AACT-GGACCAATT-G-T---TGGTTTGTGGGCATGCAAATTT-ACC-ACATGAAGCCCAACTCTT---AACG-TAC-GAG-T--AACA-ATATGCACCCCA-TGATCATTCCT--A-TACTTCTTA
gi|3085 : AAA-ATGAA--CGATATC-AGTAATATTGC--ATTGCTGA-GCATAATCGCTTT-GGTTGACGGCC--TA-TCATTGTTTGCGACGGTGTGTTTCG--ATGG-C--TTTACAGTG--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGGGTATGCAATTTT-ACC-GCATGAAGCCCATCTCTT---AACG-CCT-GAG-TG-GAAA-AT-TGCACCCCA-TTATCATTCCT--A-TACTTCTTAtt
gi|3086 : AAA-ATGAA--CGATATC-AGGAATGTTGC--ATTGCTGA-GCATACTCATTTT-GGTGGAGGGTC--TA-TCATTGTTTTGGACGGTGT-TTTTG--ATCG-T--TTTACGGTG--------------TA-AACT-GGA-CAATTGG-T---TGGCTTGTGGGCATACAAATTT-ACC-GCATGAAGCCCATCTCTT---TACG-T-C-GAG-T--AAAA-ATGTGCA-CCCA-TGATCATTCCT--A-TACTTCTTAtt
gi|3087 : AAA-ATGAA--TTATATC-AGTAATGTTGC--ATAGCGGA-TCATACTCACTTT-GGTGGAGGGTC--TA-TCATTGTTTGCGACAGTGTGTTTCG--ATGG-C--TTTACGGTG--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGGGTATGCCAATTT-ACA-GCATGAAGCCCATTTCCT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TAATAATTCCT--A-TACTTCTTAtt
gi|3088 : AAA-ATGAA--CGATATC-AGCAATGTTGC--AT-----------AATCGCTTT-GGTGGAGGGCC--TG-TCATTGTTTGCGGCGGTGTGTTTCG--ATGG-C--TTCACGGTG--------------AA-AGGT-GGACCAATT-G-T---TGGCTTGTGGCTATGCAAATTT-ACC-GTATGACATCCATCTTTT---AACG-TCT-GAG-TG-GAAA-AT-TGCACCCCA-TGATCATTCCTAAA-TACTTCTTAtt
gi|3089 : AAA-ATGA---CGATATC-AGGAATGTTGC---TTGCTGA-GCATA-TCGCTTTTGGTGGAGGGT---TA--CATTGTTTGTGA-GGTGTGTT-CG--CTAG-T--TTTACGGTG--------------CA-AACT-GGACAAATT-GAT---TGGCCT-TTGGCATGCAGA-TT-A-C-GCATGTAGCCCATTTCTT---AA-G-TCC-GAG-T--AAAA-ATGTGTA-CCCA-CGATCATTCCA--ATTACTTCTTtt
gi|3090 : AAA-ATGAAAACGATATCCAGGGATGTTGTGTATTGCTGA-GCATACTCGCTTT-GGT-AAGGGTC--TATTCATTGTTTTTGAGTGTGTTTTTCG--ATAGTT--TTTACGGT---------------AA-AACT-GGACCAATT---T---TGGC-TGTGGACATTCAAAATT-AC----------CCCATCTCTT---AATG-TCC-GAG-T--GAAA-AG-TATACCCCA-TG-TCAGTTCT--A-TACTTCTTA
gi|3091 : AAA-ATGA---CGATATA-AGGAATGGTGC--ATTGCTGAAGCATAATCGCTTT-GGTGGAGGGTCGGGA-TAATTTTTTGTGACGGTGTTTTTTGAAATTT-T--TTTACGGGGGGGGCGGGGCCGAAAA-AACTGGGACCCATT-G-T------CTTGTGGGCATGTACATTT-ACCGGCATGAAG-CCATCTTTT---ATCG-T-C-GAG-T--AAAATAT-TGCACGCCATTGATCACTC----A--ACTTCTTAtt
gi|3092 : AAATATGAA--CGATATA-AGGAATGTTGC--ATTGCTGA-GCATAATCACTTT-GGTGGAGGACC--TA-TCATTGTTTGCGAAATTGTGTTT-A--ATGG-C--TTTt
gi|3093 : G-C--TTTATGATGTC------------AA-ACAT-AGAC--AT--G-TCCATGGCTTGTGGATATGTACATTT-ACT-GCATGAAGTCTATTTCTT---AAAG-CCT------------------CACCCCA-TGGTCATTCCT--A-TACCCCCTA
gi|3094 : catttctgagcaaaatcagtctcaaaggtgtaattgcaaatgttcatggtgtctgctaaaatcaaagcaaGCGAC--TGTGTTTCG--ATGG-C--TTTACGGTA--------------AA-AAGT-GGACCAATT-G-T---TGGCTTGTGAGTATGCACATTT-ACC-GCACGAAGCCCTTCTCTT---AACG-TCT-GAA-TG-GAAA-AT-TGCACCCCG-TGATCATTCCT--A-TACTTATTct
gi|3095 : GTTTTG---TGA-CGTCTTACAGTC--------------AA-ACAT-AAACATATT-C-A---TGGTTAGCAGACATGTAAATTT-GAT-GAATGTAGTCTATTTCTT---AATG-TCT-GAGCT--GAAA-GT-TACAACTCA-TGATCATTCCT--A-TACTCCCTA
gi|3096 : G--ATGT-C--TT-ACGGTC--------------AA-ACAT-AGAGATATT-T-A---TGGCTTGCGCACATGTAAATTT-GCT-GCATGAAGTATATTTCTT---AATG-CCT-GAG-TA-GAAA-TT-TCCACCCAG-TGATTATTACT--A-TACct
gi|3097 : TTACGGTC--------------AACAAAT-AGACATATT-C-A---TG-CTGGCGGACATGTAAATTTGAAT-GCATGTAGTCTATG-CTT---AATGGTCCTGAG-TTTGAAA-AT-CGCAACCCA-TGATCATTCTT--A-TACT
gi|3098 : GGCTTGTGGGTATGTAAATTT-GCT-GCATGAAGTATGTTTCTTTAAAATG-TCT-GAG-T--GGAA-
gi|3099 : CC-GCATGAAGCCCATCTTTT---ATCG-TCC-GAG-T--AAAA-ATATGCACGCCA-TGATCACTCCT--A-TACTTCTTA