lowQualScore : 11111111111111 2222
lowQualScore : 2 2 33333333333333 1 1 0000 1 555 2 2 2
lowQualScore : . . .............. . . .... . ... . . .
lowQualScore : 5 5 00000000000000 9 9 2222 9 222 5 7 9
consensus : TAGTCTAG-G-TCACCTAG-------------NC-GT-TTGTC----AATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
Reference ( gi|110092 ) : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTC----AATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110091 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTC----AATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110093 : TAGTCTAG-G-TCACCTAG-------------TC-GT-TTGTC----AATATA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110095 : TAGTCTAG-G-TCACCTAGTATAGTAGGCTAGCC-GT-TTGTC----AATACA-GCCGT---ACTCTGCGACAAACGT-CTAAG-AGCATTCT
gi|110094 : TAGTCTAG-G-TTACCTAG-------------CA-GT-TTGTC----AATAAA-GCCGA---TCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110096 : TAG-CTAG-G-TCACCTAC-------------AC-GT-TCGTC----AATACA-GCCGT---GCTCTTCGACAAACGT-CTAGA-AGTAT
gi|110097 : TAGTCTAG-G-TCACCTAG-------------CC-GT-CTCTC----AATACA-GCCGT---GCTCTGCG
gi|110098 : TAGTCTAG-G-TCACCTAC-------------AC-GT-TTGTC----AATACA-GCCGT---GCTCTG
gi|110099 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTTTC----AATACA-GCCGT---GCT
gi|110100 : TAGTCTGA-G-TCACCTAG-------------TC-G--TTGTC----AATACAGGCCG------TCTGCGA-AAACGT-CTAGA-
gi|110101 : TAG-CTAG-G-TCATCTAC-------------AC-GC-TTGTC----AATACA-GCCGT---GCTCTTCGAAAAA
gi|110102 : TAGTCT-G-G-TCAC-TAG-------------CC-GT-TTAT-----AATACA-GCCGT---G--CTGCGACAA
gi|110103 : TAGTCTGG-GGTCACCTAG-------------CC-GTCTTGTC-----ATACA-GCCGTTTGGCTCTGTGATA
gi|110104 : AGTCTAG-G-TCACCTAG-------------CC-GT-TTGTC----AATACA-GCCGT---GCTCTGCAACAAACGT-CTAGG-AGCATTCT
gi|110105 : AGTCTAG-G-TCACCTAA-------------CCGGT-CTGTC----AATACA-GCCGTG--GCTCTGCGACAAACGTCCTAGGAAGCATTCT
gi|110106 : AGTCTAG-G-TCACCTAG-------------TC-GT-T-GTC----AATACA-GCGCT---CTTCTGCGACAAACGT-CTAGG-AGCCTCCT
gi|110107 : AGTCTAGAG-TCACCTAG-------------TC-GT-T-GTC----AATACA-GC------GCTCTGCGACAAACGT--TAGG-AGC
gi|110091 : CCTAG-------------AC-GT-TTGTCGCAGAGCACG-GCTGT---ATT----GACAAACGG-CTAGG-
gi|110104 : tagtctaggtcaCCTAG-------------AC-GT-TTGTTGCAGAGCACG-GCTGT---ATT----GACAAACGG-CTAGG-agcattct
gi|110093 : agtctaggtcaCCTAG-------------AC-GT-TTGTCGCAGAGCACG-GCTAT---ATT----GACAAACGA-CTAGG-agcattct
gi|110095 : tagtctaggtcaCTTAG-------------AC-GT-TTGTCGCAGAGTACG-GCTGT---ATT----GACAAACGG-CTAGagcattct
gi|110096 : tagtctaggtcacctagtatagtaggCTAG-------------AC-GT-TTGTCGAAGAGCACG-GCTGT---ATT----GACGAACGT-GTAGG-agcattct
Alignments
lowQualScore : 11111111111111
lowQualScore : 2 2 33333333333333 2 2 2 666 3 3
lowQualScore : . . .............. . . . ... . .
lowQualScore : 4 4 99999999999999 4 4 4 555 6 6
consensus : TAGTCTAG-G-TCACCTAGC-------------CG-T-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
Reference ( family-937 ) : TAGTCTAG-G-TCACCTAGN-------------CG-T-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110091 : TAGTCTAG-G-TCACCTAGC-------------CG-T-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110092 : TAGTCTAG-G-TCACCTAGC-------------CG-T-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110093 : TAGTCTAG-G-TCACCTAGT-------------CG-T-TTGTCAATATA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110094 : TAGTCTAG-G-TTACCTAGC-------------AG-T-TTGTCAATAAA-GCCGA---TCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110095 : TAGTCTAG-G-TCACCTAGTATAGTAGGCTAGCCG-T-TTGTCAATACA-GCCGT---ACTCTGCGACAAACGT-CTAAG-AGCATTCT
gi|110096 : TAG-CTAG-G-TCACCTACA-------------CG-T-TCGTCAATACA-GCCGT---GCTCTTCGACAAACGT-CTAGA-AGTAT
gi|110097 : TAGTCTAG-G-TCACCTAGC-------------CG-T-CTCTCAATACA-GCCGT---GCTCTGCG
gi|110098 : TAGTCTAG-G-TCACCTACA-------------CG-T-TTGTCAATACA-GCCGT---GCTCTG
gi|110099 : TAGTCTAG-G-TCACCTAGC-------------CG-T-TTTTCAATACA-GCCGT---GCT
gi|110100 : TAGTCTGA-G-TCACCTAGT-------------CG---TTGTCAATACAGGCCG------TCTGCGA-AAACGT-CTAGA-
gi|110101 : TAG-CTAG-G-TCATCTACA-------------CG-C-TTGTCAATACA-GCCGT---GCTCTTCGAAAAA
gi|110102 : TAGTCT-G-G-TCAC-TAGC-------------CG-T-TTAT-AATACA-GCCGT---G--CTGCGACAA
gi|110103 : TAGTCTGG-GGTCACCTAGC-------------CG-TCTTGTC-ATACA-GCCGTTTGGCTCTGTGATA
gi|110104 : AGTCTAG-G-TCACCTAGC-------------CG-T-TTGTCAATACA-GCCGT---GCTCTGCAACAAACGT-CTAGG-AGCATTCT
gi|110105 : AGTCTAG-G-TCACCTAAC-------------CGGT-CTGTCAATACA-GCCGTG--GCTCTGCGACAAACGTCCTAGGAAGCATTCT
gi|110106 : AGTCTAG-G-TCACCTAGT-------------CG-T-T-GTCAATACA-GCGCT---CTTCTGCGACAAACGT-CTAGG-AGCCTCCT
gi|110107 : AGTCTAGAG-TCACCTAGT-------------CG-T-T-GTCAATACA-GC------GCTCTGCGACAAACGT--TAGG-AGC
Alignments
lowQualScore : 1111111111111
lowQualScore : 2 2 2222222222222 2 2 2 666 3 3
lowQualScore : . . ............. . . . ... . .
lowQualScore : 4 4 9999999999999 4 4 4 555 6 6
consensus : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
Reference ( family-937 ) : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110091 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110092 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110093 : TAGTCTAG-G-TCACCTAG-------------TC-GT-TTGTCAATATA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110094 : TAGTCTAG-G-TTACCTAG-------------CA-GT-TTGTCAATAAA-GCCGA---TCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110095 : TAGTCTAG-G-TCACCTAGTATAGTAGGCTAGCC-GT-TTGTCAATACA-GCCGT---ACTCTGCGACAAACGT-CTAAG-AGCATTCT
gi|110096 : TAG-CTAG-G-TCACCTAC-------------AC-GT-TCGTCAATACA-GCCGT---GCTCTTCGACAAACGT-CTAGA-AGTAT
gi|110097 : TAGTCTAG-G-TCACCTAG-------------CC-GT-CTCTCAATACA-GCCGT---GCTCTGCG
gi|110098 : TAGTCTAG-G-TCACCTAC-------------AC-GT-TTGTCAATACA-GCCGT---GCTCTG
gi|110099 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTTTCAATACA-GCCGT---GCT
gi|110100 : TAGTCTGA-G-TCACCTAG-------------TC-G--TTGTCAATACAGGCCG------TCTGCGA-AAACGT-CTAGA-
gi|110101 : TAG-CTAG-G-TCATCTAC-------------AC-GC-TTGTCAATACA-GCCGT---GCTCTTCGAAAAA
gi|110102 : TAGTCT-G-G-TCAC-TAG-------------CC-GT-TTAT-AATACA-GCCGT---G--CTGCGACAA
gi|110103 : TAGTCTGG-GGTCACCTAG-------------CC-GTCTTGTC-ATACA-GCCGTTTGGCTCTGTGATA
gi|110104 : AGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCAACAAACGT-CTAGG-AGCATTCT
gi|110105 : AGTCTAG-G-TCACCTAA-------------CCGGT-CTGTCAATACA-GCCGTG--GCTCTGCGACAAACGTCCTAGGAAGCATTCT
gi|110106 : AGTCTAG-G-TCACCTAG-------------TC-GT-T-GTCAATACA-GCGCT---CTTCTGCGACAAACGT-CTAGG-AGCCTCCT
gi|110107 : AGTCTAGAG-TCACCTAG-------------TC-GT-T-GTCAATACA-GC------GCTCTGCGACAAACGT--TAGG-AGC
Alignments
lowQualScore : 1111111111111
lowQualScore : 2 2 2222222222222 2 2 2 666 3 3
lowQualScore : . . ............. . . . ... . .
lowQualScore : 4 4 9999999999999 4 4 4 555 6 6
consensus : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
Reference ( family-937 ) : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110091 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110092 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110093 : TAGTCTAG-G-TCACCTAG-------------TC-GT-TTGTCAATATA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110094 : TAGTCTAG-G-TTACCTAG-------------CA-GT-TTGTCAATAAA-GCCGA---TCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110095 : TAGTCTAG-G-TCACCTAGTATAGTAGGCTAGCC-GT-TTGTCAATACA-GCCGT---ACTCTGCGACAAACGT-CTAAG-AGCATTCT
gi|110096 : TAG-CTAG-G-TCACCTAC-------------AC-GT-TCGTCAATACA-GCCGT---GCTCTTCGACAAACGT-CTAGA-AGTAT
gi|110097 : TAGTCTAG-G-TCACCTAG-------------CC-GT-CTCTCAATACA-GCCGT---GCTCTGCG
gi|110098 : TAGTCTAG-G-TCACCTAC-------------AC-GT-TTGTCAATACA-GCCGT---GCTCTG
gi|110099 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTTTCAATACA-GCCGT---GCT
gi|110100 : TAGTCTGA-G-TCACCTAG-------------TC-G--TTGTCAATACAGGCCG------TCTGCGA-AAACGT-CTAGA-
gi|110101 : TAG-CTAG-G-TCATCTAC-------------AC-GC-TTGTCAATACA-GCCGT---GCTCTTCGAAAAA
gi|110102 : TAGTCT-G-G-TCAC-TAG-------------CC-GT-TTAT-AATACA-GCCGT---G--CTGCGACAA
gi|110103 : TAGTCTGG-GGTCACCTAG-------------CC-GTCTTGTC-ATACA-GCCGTTTGGCTCTGTGATA
gi|110104 : AGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCAACAAACGT-CTAGG-AGCATTCT
gi|110105 : AGTCTAG-G-TCACCTAA-------------CCGGT-CTGTCAATACA-GCCGTG--GCTCTGCGACAAACGTCCTAGGAAGCATTCT
gi|110106 : AGTCTAG-G-TCACCTAG-------------TC-GT-T-GTCAATACA-GCGCT---CTTCTGCGACAAACGT-CTAGG-AGCCTCCT
gi|110107 : AGTCTAGAG-TCACCTAG-------------TC-GT-T-GTCAATACA-GC------GCTCTGCGACAAACGT--TAGG-AGC
blockSeqs : A G TATAGTAGGCTAG G C G TTG C A
blockSeqs : . . . . . . G . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
finalCons : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
Alignments
lowQualScore : 1111111111111
lowQualScore : 2 2 2222222222222 2 2 2 666 3 3
lowQualScore : . . ............. . . . ... . .
lowQualScore : 4 4 9999999999999 4 4 4 555 6 6
consensus : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
Reference ( family-937 ) : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110091 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110092 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110093 : TAGTCTAG-G-TCACCTAG-------------TC-GT-TTGTCAATATA-GCCGT---GCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110094 : TAGTCTAG-G-TTACCTAG-------------CA-GT-TTGTCAATAAA-GCCGA---TCTCTGCGACAAACGT-CTAGG-AGCATTCT
gi|110095 : TAGTCTAG-G-TCACCTAGTATAGTAGGCTAGCC-GT-TTGTCAATACA-GCCGT---ACTCTGCGACAAACGT-CTAAG-AGCATTCT
gi|110096 : TAG-CTAG-G-TCACCTAC-------------AC-GT-TCGTCAATACA-GCCGT---GCTCTTCGACAAACGT-CTAGA-AGTAT
gi|110097 : TAGTCTAG-G-TCACCTAG-------------CC-GT-CTCTCAATACA-GCCGT---GCTCTGCG
gi|110098 : TAGTCTAG-G-TCACCTAC-------------AC-GT-TTGTCAATACA-GCCGT---GCTCTG
gi|110099 : TAGTCTAG-G-TCACCTAG-------------CC-GT-TTTTCAATACA-GCCGT---GCT
gi|110100 : TAGTCTGA-G-TCACCTAG-------------TC-G--TTGTCAATACAGGCCG------TCTGCGA-AAACGT-CTAGA-
gi|110101 : TAG-CTAG-G-TCATCTAC-------------AC-GC-TTGTCAATACA-GCCGT---GCTCTTCGAAAAA
gi|110102 : TAGTCT-G-G-TCAC-TAG-------------CC-GT-TTAT-AATACA-GCCGT---G--CTGCGACAA
gi|110103 : TAGTCTGG-GGTCACCTAG-------------CC-GTCTTGTC-ATACA-GCCGTTTGGCTCTGTGATA
gi|110104 : AGTCTAG-G-TCACCTAG-------------CC-GT-TTGTCAATACA-GCCGT---GCTCTGCAACAAACGT-CTAGG-AGCATTCT
gi|110105 : AGTCTAG-G-TCACCTAA-------------CCGGT-CTGTCAATACA-GCCGTG--GCTCTGCGACAAACGTCCTAGGAAGCATTCT
gi|110106 : AGTCTAG-G-TCACCTAG-------------TC-GT-T-GTCAATACA-GCGCT---CTTCTGCGACAAACGT-CTAGG-AGCCTCCT
gi|110107 : AGTCTAGAG-TCACCTAG-------------TC-GT-T-GTCAATACA-GC------GCTCTGCGACAAACGT--TAGG-AGC