lowQualScore : 11 1111111
lowQualScore : 1 2 99 5 2 5 55 2 3 8888888 44 33 444 2 2 6 1 5 2
lowQualScore : . . .. . . . .. . . ....... .. .. ... . . . . . .
lowQualScore : 1 5 22 8 5 9 88 5 1 3333333 77 77 777 7 7 1 7 3 7
consensus : TATCCGCCCGG-TCATATGGTGGAGTG-GNCTAGGGA-TGT-TGAGTAC----C-CAG-A--CA---ACCA-GGGTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
Reference ( gi|21739 ) : TATCCGCCCGG-TCATATGGTAAAATG-GACTAGGGA-GGT-TAAGTAC----C-TAA-A--CA---ACCA-GAGTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21740 : TATCCACCCGG-TCATATGGTGGAATG-GACTAGGGG-TGT-TAAGTACGTACC-CAG-A--CA---AACA-GAGTTCC-CCCGGTGCCTT-TGGA-CGTACATG
gi|21743 : TATCCGTCCGA-TAATATGGTGGAATA-GATCAGGGA-TGT-TCAATAC----C-CAG-A--CA---ACCA-GAGTTCT-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21744 : TATCTGCCTGG-TAATATGGTGGAATG-TGCTAAGGA-AGT-TGAGTAC----C-CAG-A--CA---ACCA-GAGTTTC-TCCGGTGCCTT-TGGA-CATACATG
gi|21745 : TATCCGCCCGG-TCATATGGTGGAAAG-GAATAGAT--TGT-TAAGTAC----C-CAG-A--CA---ACCA--AGTTTC-TCCGGTGCCTT-TGGAGCGTACATG
gi|21742 : TATCCGCCCGG-TCATATGGTGAAGTG-GTCTAGGGA-TGT-TGAGTAC----G-CAG-A--CA---ACCA-GGGTTCCATCC-ATCCTTT-TGAA-CGTATATG
gi|21747 : TATCCGCCTGG-TCATATGGTGGAGTG-GACTAGGAA-TGT-TGAGTAA----G-GAG-A--CA---ACCA-GGATTCC-TCCCATTCCTT-TGAA-TGTACGTG
gi|21741 : TAGCTGCCCGG-TCATATGGTGAA-TG-GGCTAGGGA-TGT-TTAGTAC----T-CAG-A--CA---ACCA-GGATCCC-TCTATTGCCTT-TGGA-CATACATG
gi|21750 : TATCTGTCCCG-ACGTATGGTGGA-TG-GGCTAGGAA-TGT-TGAGCAA----C-CAA-A--CA---AACA-GGATCCC-TCCGGTGCCAT-TGGA-CGTACGTG
gi|21748 : TATCT-CCCGG-TCATATGGTGGAGTG-GTCTAGGGA-TGT-TGAGTAC--------A-G--CAGATACCA-GGGTTCC-TCC-ATTCTTT-TGAA-CGTACGTG
gi|21749 : TATCCGCCTGG-TCATATGGTGGAGTG-GTCTAGGGA---T----GTAC----G-GAG-A--CA---ACCA-GGATTCC-TCCCATTCCTT-TGAA-CGTAC
gi|21746 : TATC-GCCCGG-TCATAT-GTGGAA-G-GAATATG---AGT-TAAGTAC----C-CAAGA--C----ACCA--AG-TCC-TCCGGTGCCTTGTGGA-CGTA
gi|21751 : TATCCGCCTGG-TCATACGGTGGAATG-GGCTAGGGA-TGT-TAAGTAC----C-acatg
gi|21752 : TATCCTCCCA--TCATATAGTGAG-TG-T-CTAGGGA-TGT-TG-GTAA----CGCAG-A--TA---ACCA-GAGTTCC-TCCCATTCCTTCTGAA-CAGACGTGc
gi|21753 : ATCC-CGCGG-TCATATGGTGGAATGCGACTAGGGATGGT-TAAGTAC----C-AGA-A--CA---ACCAGGAGTTCC--CCGGCGCCTT-TTGA-CGTACAT
gi|21754 : TCCTCCCGG-TCATATGGAGGAGTA-GTCTAAGG--GGTGTGAGTAC----G-CAG-AATTA---ATCA-GGGTTCC-TTCCATTCCTT-TGAA-CGTACGTG
gi|21755 : CCCGGCTCATATGGCGGAGTG-GTCTAGGAATGTT-TGAGTAC----G-CAG-A--TA---ACCA-GGGTTGC-TCTCATTCCTT-TGAA-CGT
Alignments
lowQualScore : 0 2 3 2 1 2 2 2 22 5555 2 33 2 33 2 2 5 0 5 2
lowQualScore : . . . . . . . . .. .... . .. . .. . . . . . .
lowQualScore : 4 4 4 4 0 4 4 4 44 0000 4 66 4 44 5 5 1 9 0 5
consensus : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
Reference ( family-931 ) : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21739 : TATCCGCCCGG-TCATATGGTAAAATG-GACT-AGGGA-GG-TT-AA----GT-AC-CT-AAA--CAACCAGA-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21740 : TATCCACCCGG-TCATATGGTGGAATG-GACT-AGGGG-TG-TT-AAGTACGT-AC-CC-AGA--CAAACAGA-GTTCC-CCCGGTGCCTT-TGGA-CGTACATG
gi|21741 : TAGCTGCCCGG-TCATATGGTGAA-TG-GGCT-AGGGA-TG-TT-TA----GT-AC-TC-AGA--CAACCAGG-ATCCC-TCTATTGCCTT-TGGA-CATACATG
gi|21742 : TATCCGCCCGG-TCATATGGTGAAGTG-GTCT-AGGGA-TG-TT-GA----GT-AC-GC-AGA--CAACCAGG-GTTCCATCC-ATCCTTT-TGAA-CGTATATG
gi|21743 : TATCCGTCCGA-TAATATGGTGGAATA-GATC-AGGGA-TG-TT-CA----AT-AC-CC-AGA--CAACCAGA-GTTCT-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21744 : TATCTGCCTGG-TAATATGGTGGAATG-TGCT-AAGGA-AG-TT-GA----GT-AC-CC-AGA--CAACCAGA-GTTTC-TCCGGTGCCTT-TGGA-CATACATG
gi|21745 : TATCCGCCCGG-TCATATGGTGGAAAG-GAAT-A--GATTG-TT-AA----GT-AC-CC-AGA--CAACCA-A-GTTTC-TCCGGTGCCTT-TGGAGCGTACATG
gi|21746 : TATC-GCCCGG-TCATAT-GTGGAA-G-GAAT-ATGA---G-TT-AA----GT-AC-CCAAGA--C-ACCAAG---TCC-TCCGGTGCCTTGTGGA-CGTA
gi|21747 : TATCCGCCTGG-TCATATGGTGGAGTG-GACT-AGGAA-TG-TT-GA----GT-AA-GG-AGA--CAACCAGG-ATTCC-TCCCATTCCTT-TGAA-TGTACGTGacatg
gi|21748 : TATCT-CCCGG-TCATATGGTGGAGTG-GTCT-AGGGA-TG-TT-GA----GT-ACAGC-AGA--T-ACCAGG-GTTCC-TCC-ATTCTTT-TGAA-CGTACGTG
gi|21749 : TATCCGCCTGG-TCATATGGTGGAGTG-GTCT-AGGGA-T-----------GT-AC-GG-AGA--CAACCAGG-ATTCC-TCCCATTCCTT-TGAA-CGTAC
gi|21750 : TATCTGTCCCG-ACGTATGGTGGA-TG-GGCT-AGGAA-TG-TT-GA----GC-AA-CC-AAA--CAAACAGG-ATCCC-TCCGGTGCCAT-TGGA-CGTACGTG
gi|21751 : TATCCGCCTGG-TCATACGGTGGAATG-GGCT-AGGGA-TG-TT-AA----GT-AC-CC-
gi|21752 : TATCCTCCCA--TCATATAGTG-AGTG--TCT-AGGGA-TG-TT-G-----GTAAC-GC-AGA--TAACCAGA-GTTCC-TCCCATTCCTTCTGAA-CAGACGTG
gi|21753 : ATCC-CGCGG-TCATATGGTGGAATGCGACT-AGGGA-TGGTT-AA----GT-AC-CA-GAA--CAACCAGGAGTTCC--CCGGCGCCTT-TTGA-CGTACAT
gi|21754 : TCCTCCCGG-TCATATGGAGGAGTA-GTCTAAGGGG-TG--T-GA----GT-AC-GC-AGAATTAATCAGG-GTTCC-TTCCATTCCTT-TGAA-CGTACGTG
gi|21755 : CCCGGCTCATATGGCGGAGTG-GTCT-AGGAA-TG-TTTGA----GT-AC-GC-AGA--TAACCAGG-GTTGC-TCTCATTCCTT-TGAA-CGT
Alignments
lowQualScore : 0 2 3 2 1 2 2 2 22 5555 2 33 2 33 2 2 5 0 5 2
lowQualScore : . . . . . . . . .. .... . .. . .. . . . . . .
lowQualScore : 4 4 4 4 0 4 4 4 44 0000 4 66 4 44 5 5 1 9 0 5
consensus : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
Reference ( family-931 ) : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21739 : TATCCGCCCGG-TCATATGGTAAAATG-GACT-AGGGA-GG-TT-AA----GT-AC-CT-AAA--CAACCAGA-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21740 : TATCCACCCGG-TCATATGGTGGAATG-GACT-AGGGG-TG-TT-AAGTACGT-AC-CC-AGA--CAAACAGA-GTTCC-CCCGGTGCCTT-TGGA-CGTACATG
gi|21741 : TAGCTGCCCGG-TCATATGGTGAA-TG-GGCT-AGGGA-TG-TT-TA----GT-AC-TC-AGA--CAACCAGG-ATCCC-TCTATTGCCTT-TGGA-CATACATG
gi|21742 : TATCCGCCCGG-TCATATGGTGAAGTG-GTCT-AGGGA-TG-TT-GA----GT-AC-GC-AGA--CAACCAGG-GTTCCATCC-ATCCTTT-TGAA-CGTATATG
gi|21743 : TATCCGTCCGA-TAATATGGTGGAATA-GATC-AGGGA-TG-TT-CA----AT-AC-CC-AGA--CAACCAGA-GTTCT-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21744 : TATCTGCCTGG-TAATATGGTGGAATG-TGCT-AAGGA-AG-TT-GA----GT-AC-CC-AGA--CAACCAGA-GTTTC-TCCGGTGCCTT-TGGA-CATACATG
gi|21745 : TATCCGCCCGG-TCATATGGTGGAAAG-GAAT-A--GATTG-TT-AA----GT-AC-CC-AGA--CAACCA-A-GTTTC-TCCGGTGCCTT-TGGAGCGTACATG
gi|21746 : TATC-GCCCGG-TCATAT-GTGGAA-G-GAAT-ATGA---G-TT-AA----GT-AC-CCAAGA--C-ACCAAG---TCC-TCCGGTGCCTTGTGGA-CGTA
gi|21747 : TATCCGCCTGG-TCATATGGTGGAGTG-GACT-AGGAA-TG-TT-GA----GT-AA-GG-AGA--CAACCAGG-ATTCC-TCCCATTCCTT-TGAA-TGTACGTGacatg
gi|21748 : TATCT-CCCGG-TCATATGGTGGAGTG-GTCT-AGGGA-TG-TT-GA----GT-ACAGC-AGA--T-ACCAGG-GTTCC-TCC-ATTCTTT-TGAA-CGTACGTG
gi|21749 : TATCCGCCTGG-TCATATGGTGGAGTG-GTCT-AGGGA-T-----------GT-AC-GG-AGA--CAACCAGG-ATTCC-TCCCATTCCTT-TGAA-CGTAC
gi|21750 : TATCTGTCCCG-ACGTATGGTGGA-TG-GGCT-AGGAA-TG-TT-GA----GC-AA-CC-AAA--CAAACAGG-ATCCC-TCCGGTGCCAT-TGGA-CGTACGTG
gi|21751 : TATCCGCCTGG-TCATACGGTGGAATG-GGCT-AGGGA-TG-TT-AA----GT-AC-CC-
gi|21752 : TATCCTCCCA--TCATATAGTG-AGTG--TCT-AGGGA-TG-TT-G-----GTAAC-GC-AGA--TAACCAGA-GTTCC-TCCCATTCCTTCTGAA-CAGACGTG
gi|21753 : ATCC-CGCGG-TCATATGGTGGAATGCGACT-AGGGA-TGGTT-AA----GT-AC-CA-GAA--CAACCAGGAGTTCC--CCGGCGCCTT-TTGA-CGTACAT
gi|21754 : TCCTCCCGG-TCATATGGAGGAGTA-GTCTAAGGGG-TG--T-GA----GT-AC-GC-AGAATTAATCAGG-GTTCC-TTCCATTCCTT-TGAA-CGTACGTG
gi|21755 : CCCGGCTCATATGGCGGAGTG-GTCT-AGGAA-TG-TTTGA----GT-AC-GC-AGA--TAACCAGG-GTTGC-TCTCATTCCTT-TGAA-CGT
blockSeqs : C A C A A T G TG GTAC A AG A AT A A G G G
blockSeqs : . G . G . . . A . . C . . . . A C .
blockSeqs : . A . T . . . T . . T . . . . G . .
blockSeqs : . A . A . . . G . . G . . . . G . .
blockSeqs : . A . G . . . C . . C . . . . G . .
blockSeqs : . A . A . . . G . . C . . . . G . .
blockSeqs : . G . A . . . A . . C . . . . C . .
blockSeqs : . G . A . . . A . . C . . . . C . .
blockSeqs : . G . T . . . G . . G . . . . G . .
blockSeqs : . A . T . . . G . . G . . . . C . .
blockSeqs : . G . G . . . G . . C . . . . G . .
blockSeqs : . A . G . . . A . . C . . . . C . .
blockSeqs : . G . T . . . G . . G . . . . C . .
blockSeqs : . G . A . . . A . . C . . . . . . .
blockSeqs : . . . T . . . G . . G . . . . . . .
blockSeqs : . . . T . . . . . . G .
blockSeqCons :
originalCons : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
finalCons : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
Alignments
lowQualScore : 0 2 3 2 1 2 2 2 22 5555 2 33 2 33 2 2 5 0 5 2
lowQualScore : . . . . . . . . .. .... . .. . .. . . . . . .
lowQualScore : 4 4 4 4 0 4 4 4 44 0000 4 66 4 44 5 5 1 9 0 5
consensus : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
Reference ( family-931 ) : TATCCGCCCGG-TCATATGGTGGAGTG-GNCT-AGGGA-TG-TT-GA----GT-AC-CC-AGA--CAACCAGG-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21739 : TATCCGCCCGG-TCATATGGTAAAATG-GACT-AGGGA-GG-TT-AA----GT-AC-CT-AAA--CAACCAGA-GTTCC-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21740 : TATCCACCCGG-TCATATGGTGGAATG-GACT-AGGGG-TG-TT-AAGTACGT-AC-CC-AGA--CAAACAGA-GTTCC-CCCGGTGCCTT-TGGA-CGTACATG
gi|21741 : TAGCTGCCCGG-TCATATGGTGAA-TG-GGCT-AGGGA-TG-TT-TA----GT-AC-TC-AGA--CAACCAGG-ATCCC-TCTATTGCCTT-TGGA-CATACATG
gi|21742 : TATCCGCCCGG-TCATATGGTGAAGTG-GTCT-AGGGA-TG-TT-GA----GT-AC-GC-AGA--CAACCAGG-GTTCCATCC-ATCCTTT-TGAA-CGTATATG
gi|21743 : TATCCGTCCGA-TAATATGGTGGAATA-GATC-AGGGA-TG-TT-CA----AT-AC-CC-AGA--CAACCAGA-GTTCT-TCCGGTGCCTT-TGGA-CGTACGTG
gi|21744 : TATCTGCCTGG-TAATATGGTGGAATG-TGCT-AAGGA-AG-TT-GA----GT-AC-CC-AGA--CAACCAGA-GTTTC-TCCGGTGCCTT-TGGA-CATACATG
gi|21745 : TATCCGCCCGG-TCATATGGTGGAAAG-GAAT-A--GATTG-TT-AA----GT-AC-CC-AGA--CAACCA-A-GTTTC-TCCGGTGCCTT-TGGAGCGTACATG
gi|21746 : TATC-GCCCGG-TCATAT-GTGGAA-G-GAAT-ATGA---G-TT-AA----GT-AC-CCAAGA--C-ACCAAG---TCC-TCCGGTGCCTTGTGGA-CGTA
gi|21747 : TATCCGCCTGG-TCATATGGTGGAGTG-GACT-AGGAA-TG-TT-GA----GT-AA-GG-AGA--CAACCAGG-ATTCC-TCCCATTCCTT-TGAA-TGTACGTGacatg
gi|21748 : TATCT-CCCGG-TCATATGGTGGAGTG-GTCT-AGGGA-TG-TT-GA----GT-ACAGC-AGA--T-ACCAGG-GTTCC-TCC-ATTCTTT-TGAA-CGTACGTG
gi|21749 : TATCCGCCTGG-TCATATGGTGGAGTG-GTCT-AGGGA-T-----------GT-AC-GG-AGA--CAACCAGG-ATTCC-TCCCATTCCTT-TGAA-CGTAC
gi|21750 : TATCTGTCCCG-ACGTATGGTGGA-TG-GGCT-AGGAA-TG-TT-GA----GC-AA-CC-AAA--CAAACAGG-ATCCC-TCCGGTGCCAT-TGGA-CGTACGTG
gi|21751 : TATCCGCCTGG-TCATACGGTGGAATG-GGCT-AGGGA-TG-TT-AA----GT-AC-CC-
gi|21752 : TATCCTCCCA--TCATATAGTG-AGTG--TCT-AGGGA-TG-TT-G-----GTAAC-GC-AGA--TAACCAGA-GTTCC-TCCCATTCCTTCTGAA-CAGACGTG
gi|21753 : ATCC-CGCGG-TCATATGGTGGAATGCGACT-AGGGA-TGGTT-AA----GT-AC-CA-GAA--CAACCAGGAGTTCC--CCGGCGCCTT-TTGA-CGTACAT
gi|21754 : TCCTCCCGG-TCATATGGAGGAGTA-GTCTAAGGGG-TG--T-GA----GT-AC-GC-AGAATTAATCAGG-GTTCC-TTCCATTCCTT-TGAA-CGTACGTG
gi|21755 : CCCGGCTCATATGGCGGAGTG-GTCT-AGGAA-TG-TTTGA----GT-AC-GC-AGA--TAACCAGG-GTTGC-TCTCATTCCTT-TGAA-CGT