lowQualScore : 11111
lowQualScore : 2 3 555 2 00000 2 77777 2 33 2 5 2 2 7 2 33 5555
lowQualScore : . . ... . ..... . ..... . .. . . . . . . .. ....
lowQualScore : 2 1 000 9 00000 9 11111 7 44 5 0 5 5 5 5 44 3333
consensus : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACGA-TTC-T-AC-TACG--ATCATTT----AGATCTT
Reference ( gi|28699 ) : TGATTGCCAT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACGA-TTC-T-AC-TACG--ATCATTT----AGATCTT
gi|28700 : TGATTGCCGT-CACA---CC-GACCACGTGTACGTTTGA-----A-T--GAAA-TCACC-ACGA-TTC-T-AC-TACG--ATCATTT----AGATCTT
gi|28702 : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACGA-TTC-TAAC-TACG--ATCATTT----AGATCTT
gi|28701 : TGAT-GCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T---AAA-TCACC-ACGA-TTC-T-AC-TACG--ATCATTT----AGATCTT
gi|28703 : TGATTGCCGTACACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACGA-TTC-TAAC-TACG--ATCATTT----AGATCTT
gi|28704 : TGATTGCTGT-CACA---CC-GACTATGT-----TTT-A-----A-T--CAAA-TCACC-ACGA-TTA-T-AC-TACG--ATCATGC----AGATCTT
gi|28705 : TGATTGCTGT-CACA---TC-GATAACGT-----TTT-ATTAAAA-T--GAAA-TCACT-ACAA-TTC-T-AC-TACG--ATCATTT----ATATCTT
gi|28706 : TGATTGCCGT-CACA---CCAGACCACGTC----TTT-A-----A-TTGAAAA-TCACCTACGAATTCAT-AC-TACGCGATCATTT----AGATCTT
gi|28707 : TGATTGC-AT-CACAGCACC-GACCACGT-----TT--A-----A-T--GGAA-ATACC-ACGA-TTC-T-AC-TACG--ATCA-AT----AGATCTT
gi|28708 : TGATTGATGT-CACA---CT-GAC-ACGT-----TCA-A-----A-T--GAAA-TCACC-ACGA-TCC-T-AC-TTCG--AGCATGT----GGATCTT
gi|28709 : GATTGCCAT-CAAA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACGA-TTC-T-AC-TACG--ATCATTA----AGGTC
gi|28710 : GGTTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA--CACC-ACGA--TC-T-AC-TACG--ATCATTT----AGATC
gi|28711 : GCCAC-CGC-------GACC--GG-----TTT-A-----A-T--GAA--TCAC--ACAA-TTC-T-A--TACG--ATCATTT----AGATTTT
gi|28712 : T-CACA---CC-GACCA-GT-----TTT-A-----AAT--GAAAATCACCCACGA-TTC-TGACGTACG--ATCATTT----AGATCTT
gi|28713 : ---CC-AACCACGT-----TTT-A-----A-T--CCCA-TCACC-ACGA-TTT-T-AC-TATG--ATCATGT----AAATCTT
gi|28714 : -T--GAAA-TCACC-ACGA-TTC-T-AC-TACG--ACCATTTCTAAAGATCTT
gi|28715 : --GAAA-TTACC-ACGA-TTC-T-AC-TACG--ATCATTT----
Alignments
lowQualScore : 2 444 2 99999 2 66666 2 33 2 4 2 2 7 2 33 5555
lowQualScore : . ... . ..... . ..... . .. . . . . . . .. ....
lowQualScore : 9 777 7 33333 7 77777 5 22 4 7 4 4 1 4 22 0000
consensus : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
Reference ( family-929 ) : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28699 : TGATTGCCAT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28700 : TGATTGCCGT-CACA---CC-GACCACGTGTACGTTTGA-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28701 : TGAT-GCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T---AAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28702 : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACG-ATTC-TAAC-TA--CGATCATTT----AGATCTT
gi|28703 : TGATTGCCGTACACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACG-ATTC-TAAC-TA--CGATCATTT----AGATCTT
gi|28704 : TGATTGCTGT-CACA---CC-GACTATGT-----TTT-A-----A-T--CAAA-TCACC-ACG-ATTA-T-AC-TA--CGATCATGC----AGATCTT
gi|28705 : TGATTGCTGT-CACA---TC-GATAACGT-----TTT-ATTAAAA-T--GAAA-TCACT-ACA-ATTC-T-AC-TA--CGATCATTT----ATATCTT
gi|28706 : TGATTGCCGT-CACA---CCAGACCACGTC----TTT-A-----A-TTGAAAA-TCACCTACGAATTCAT-AC-TACGCGATCATTT----AGATCTT
gi|28707 : TGATTGC-AT-CACAGCACC-GACCACGT-----TT--A-----A-T--GGAA-ATACC-ACG-ATTC-T-AC-TA--CGATCA-AT----AGATCTT
gi|28708 : TGATTGATGT-CACA---CT-GAC-ACGT-----TCA-A-----A-T--GAAA-TCACC-ACG-ATCC-T-AC-TT--CGAGCATGT----GGATCTT
gi|28709 : GATTGCCAT-CAAA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTA----AGGTC
gi|28710 : GGTTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA--CACC-ACG-A-TC-T-AC-TA--CGATCATTT----AGATC
gi|28711 : GC-CACC---GC-GACC--GG-----TTT-A-----A-T--GAA--TCAC--ACA-ATTC-T-A--TA--CGATCATTT----AGATTTT
gi|28712 : T-CACA---CC-GACCA-GT-----TTT-A-----AAT--GAAAATCACCCACG-ATTC-TGACGTA--CGATCATTT----AGATCTT
gi|28713 : ---CC-AACCACGT-----TTT-A-----A-T--CCCA-TCACC-ACG-ATTT-T-AC-TA--TGATCATGT----AAATCTT
gi|28714 : -T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGACCATTTCTAAAGATCTT
gi|28715 : --GAAA-TTACC-ACG-ATTC-T-AC-TA--CGATCATTT----
Alignments
lowQualScore : 2 444 2 99999 2 66666 2 33 2 4 2 2 7 2 33 5555
lowQualScore : . ... . ..... . ..... . .. . . . . . . .. ....
lowQualScore : 9 777 7 33333 7 77777 5 22 4 7 4 4 1 4 22 0000
consensus : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
Reference ( family-929 ) : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28699 : TGATTGCCAT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28700 : TGATTGCCGT-CACA---CC-GACCACGTGTACGTTTGA-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28701 : TGAT-GCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T---AAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28702 : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACG-ATTC-TAAC-TA--CGATCATTT----AGATCTT
gi|28703 : TGATTGCCGTACACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACG-ATTC-TAAC-TA--CGATCATTT----AGATCTT
gi|28704 : TGATTGCTGT-CACA---CC-GACTATGT-----TTT-A-----A-T--CAAA-TCACC-ACG-ATTA-T-AC-TA--CGATCATGC----AGATCTT
gi|28705 : TGATTGCTGT-CACA---TC-GATAACGT-----TTT-ATTAAAA-T--GAAA-TCACT-ACA-ATTC-T-AC-TA--CGATCATTT----ATATCTT
gi|28706 : TGATTGCCGT-CACA---CCAGACCACGTC----TTT-A-----A-TTGAAAA-TCACCTACGAATTCAT-AC-TACGCGATCATTT----AGATCTT
gi|28707 : TGATTGC-AT-CACAGCACC-GACCACGT-----TT--A-----A-T--GGAA-ATACC-ACG-ATTC-T-AC-TA--CGATCA-AT----AGATCTT
gi|28708 : TGATTGATGT-CACA---CT-GAC-ACGT-----TCA-A-----A-T--GAAA-TCACC-ACG-ATCC-T-AC-TT--CGAGCATGT----GGATCTT
gi|28709 : GATTGCCAT-CAAA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTA----AGGTC
gi|28710 : GGTTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA--CACC-ACG-A-TC-T-AC-TA--CGATCATTT----AGATC
gi|28711 : GC-CACC---GC-GACC--GG-----TTT-A-----A-T--GAA--TCAC--ACA-ATTC-T-A--TA--CGATCATTT----AGATTTT
gi|28712 : T-CACA---CC-GACCA-GT-----TTT-A-----AAT--GAAAATCACCCACG-ATTC-TGACGTA--CGATCATTT----AGATCTT
gi|28713 : ---CC-AACCACGT-----TTT-A-----A-T--CCCA-TCACC-ACG-ATTT-T-AC-TA--TGATCATGT----AAATCTT
gi|28714 : -T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGACCATTTCTAAAGATCTT
gi|28715 : --GAAA-TTACC-ACG-ATTC-T-AC-TA--CGATCATTT----
blockSeqs : A GCA A GTACG G TTAAA A TG A T A A A G CG CTAA
blockSeqs : . . . C . . . . . C . . A . . .
blockSeqs : . . . . . . . . . . . . G . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
finalCons : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
Alignments
lowQualScore : 2 444 2 99999 2 66666 2 33 2 4 2 2 7 2 33 5555
lowQualScore : . ... . ..... . ..... . .. . . . . . . .. ....
lowQualScore : 9 777 7 33333 7 77777 5 22 4 7 4 4 1 4 22 0000
consensus : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
Reference ( family-929 ) : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28699 : TGATTGCCAT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28700 : TGATTGCCGT-CACA---CC-GACCACGTGTACGTTTGA-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28701 : TGAT-GCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T---AAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTT----AGATCTT
gi|28702 : TGATTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACG-ATTC-TAAC-TA--CGATCATTT----AGATCTT
gi|28703 : TGATTGCCGTACACA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TC-CT-ACG-ATTC-TAAC-TA--CGATCATTT----AGATCTT
gi|28704 : TGATTGCTGT-CACA---CC-GACTATGT-----TTT-A-----A-T--CAAA-TCACC-ACG-ATTA-T-AC-TA--CGATCATGC----AGATCTT
gi|28705 : TGATTGCTGT-CACA---TC-GATAACGT-----TTT-ATTAAAA-T--GAAA-TCACT-ACA-ATTC-T-AC-TA--CGATCATTT----ATATCTT
gi|28706 : TGATTGCCGT-CACA---CCAGACCACGTC----TTT-A-----A-TTGAAAA-TCACCTACGAATTCAT-AC-TACGCGATCATTT----AGATCTT
gi|28707 : TGATTGC-AT-CACAGCACC-GACCACGT-----TT--A-----A-T--GGAA-ATACC-ACG-ATTC-T-AC-TA--CGATCA-AT----AGATCTT
gi|28708 : TGATTGATGT-CACA---CT-GAC-ACGT-----TCA-A-----A-T--GAAA-TCACC-ACG-ATCC-T-AC-TT--CGAGCATGT----GGATCTT
gi|28709 : GATTGCCAT-CAAA---CC-GACCACGT-----TTT-A-----A-T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGATCATTA----AGGTC
gi|28710 : GGTTGCCGT-CACA---CC-GACCACGT-----TTT-A-----A-T--GAAA--CACC-ACG-A-TC-T-AC-TA--CGATCATTT----AGATC
gi|28711 : GC-CACC---GC-GACC--GG-----TTT-A-----A-T--GAA--TCAC--ACA-ATTC-T-A--TA--CGATCATTT----AGATTTT
gi|28712 : T-CACA---CC-GACCA-GT-----TTT-A-----AAT--GAAAATCACCCACG-ATTC-TGACGTA--CGATCATTT----AGATCTT
gi|28713 : ---CC-AACCACGT-----TTT-A-----A-T--CCCA-TCACC-ACG-ATTT-T-AC-TA--TGATCATGT----AAATCTT
gi|28714 : -T--GAAA-TCACC-ACG-ATTC-T-AC-TA--CGACCATTTCTAAAGATCTT
gi|28715 : --GAAA-TTACC-ACG-ATTC-T-AC-TA--CGATCATTT----