lowQualScore : 1111111111 1111
lowQualScore : 6 77 99 2 2 66 33 9999999 33 2 2222222222 7777 2 7 2 33 5 5 2 2 2 2 2 2 2 3
lowQualScore : . .. .. . . .. .. ....... .. . .......... .... . . . .. . . . . . . . . . .
lowQualScore : 7 99 66 9 9 88 99 4444444 99 9 5555555555 2222 7 1 5 44 0 0 5 5 5 5 7 7 7 0
consensus : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-C-ACTT-CTTCAATTT-C--TTA-TTAATTA-GCA-G-A-TAT-GGCGC-TAGCATTC-TA-ATCTTTTTT
Reference ( gi|5330 ) : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-T-GCTT-CTTCAACTT-C--TTA-TTAATTA-GCA-G-A-TAT-GGCGC-TAGCATTC-TA-ATTTTTTTT
gi|5331 : ATA-AAACAAAA--AT--A-TGATTG-A--T--TAAA------GT--A-TTTA----------CTA-C-ACTT-CTTCAATTT-C--TTA-TTAATTG-GCG-G-A-TAT-GGCGC-TAGCATTC-TG-ATTTTTTTT
gi|5332 : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAT------TT--A-TTTA----------CTA-C-ACTT-TTTCAATTT-C--TTA-TTAATTA-TCA-G-A-TAT-GGCGC-TAGCATTC-TG-ATCTTTTT
gi|5333 : ATA-AAACAAAA--AT--C-AGATTC-A--T--TAAATTACGCGT--A-TCTA----------CTA-A-ACTT-CTTTAATTT-C--TTA-TTAATTA-GCA-G-A-TAT-GGCGC-TAGCATTC-TA-ATCTTTTTT
gi|5337 : ATA-AAACAAAA---T--C-TGATTC-A--T--TAAA------GT--AATTTA----------CTA-C-GCTT-CT-CAATTTTC--TTAATTAATTA-GCT-A-A-TAT-GGCAC-TAGCATTC-TA-ATCTTTTTT
gi|5334 : ATA-TAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTAATTACATGTACTA-C-ACTT-CTTTAATTT-C--TTC-GTAATTA-GCA-A-A-TAT-GACGC-TAGCATTC-TA-ATCTTTTTT
gi|5335 : ACA-GAACAAAA--AT--C-TAATTC-A--T--TAAT------GT--A-TTTA----------CTT-C-ACTT-CTTCAATTT-C--TTA-TTAATTA-TCA-A-A-TAT-GGTGC-TA-CATTC-TA-ATCTTTTTT
gi|5338 : ATATAAACAAAA--TT--CCTGATTCCA--T--TAAA------GT--T-TTTA----------CTAAC-ACTC-CTTCATTTT-C--TTA-TTAATTAAGCA-G-A-TAT-GGCGC-TAGCA-TC-TATGCTTTTTT
gi|5339 : ATA-AAA--AAA--AT--C-TGATTC-A--T--TAAA-----------------------------------T-CTTCAATTT-C--TTA-TCAATTC-GTA-C-A-TAT-GGCGC-TAGCATTC-TA-ATCTTTTTT
gi|5340 : ATATAAACAGAA--AT--C-GGATTC-A--TGGTGAG------AT--A-TTTA----------CTA-C-A----CTTCAATTT-C--TTA--TAATTG-GAAGG-A-TAT--GTGC-TAGCATTC-GC-ATTCTT
gi|5336 : ACA-GAACAAAA--ATATC-TAATTA-A--T--TAT-------GT--A-TTTA----------CTT-TCACTTTCTTCCAATT-C--TTACTTAATTA-TCA-ACA-TAT-AGTGC-TACGATTC-TA-ATCTTTTTatctttttt
gi|5341 : TA-AAACAAAA--AT--C-TTATTC-A--T--GAAA------GT--A-TTTA----------CTA-C-ACTT-C-------------------ATTA-GCA-G-A-TAT-GACGC-TAGTATTC-TA-ATCTTTTTT
gi|5342 : A-AAACAAAA--AT--C-TGAATC-AT-T--TAAA------GTTAA-TTTA----------CTT-C-ATTC-CTTCAATTT-CCTTTA-TTAATTAGGCA-G-ATTATGGGCGCAGAGCATTCTTC-ATCTTTCTT
gi|5343 : ACAAAAGAATA-C-TGATTC-AAGT--AAAA------AT--G-TTTG----------CTA-C-ATTT-CTCTAATTG-C--TTA-TTA-TTA-GTA-G-A-TAT-GGAGC-TAGGATTT-CA-ATCCTTTT
gi|5344 : ACAAAAGAATA-C-TGATTC-A--G--TAAA-------T--G-TTTG----------CTA-C-ATTT-CTTCGATTG-C--TTA-TTAATTA-GTA-G-A-TAT-G
gi|5345 : TA-C-ACTT-CTTCAATTT-C--TTA-TTAATTA-GCA-G-G-TAT-GGTGC-TAGCATTC-TG-ATCTTTTTT
gi|5346 : TTCAATTT-C--TTA-TTAATTA-GGA-A-A-TAT-GACGC-TAGCACTG-TA-ATCTTTTT
Alignments
lowQualScore : 1111111111
lowQualScore : 6 77 99 2 2 66 33 8888888 33 2 1111111111 5 2 2 33 4 2 2 2 2 2 2 55555 2 2
lowQualScore : . .. .. . . .. .. ....... .. . .......... . . . .. . . . . . . . ..... . .
lowQualScore : 2 33 00 7 7 33 77 1111111 77 7 7777777777 0 5 4 22 7 4 4 4 4 4 4 99999 5 5
consensus : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
Reference ( family-927 ) : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5330 : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-TGCTT-CTTCAACTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATTTTTTTT
gi|5331 : ATA-AAACAAAA--AT--A-TGATTG-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-G-GCG-G-A-TAT-G-----GCGC-TAGCATTC-TGATTTTTTTT
gi|5332 : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAT------TT--A-TTTA----------CTA-CACTT-TTTCAATTT-C--TTA-TTAATT-A-TCA-G-A-TAT-G-----GCGC-TAGCATTC-TGATCTTTTT
gi|5333 : ATA-AAACAAAA--AT--C-AGATTC-A--T--TAAATTACGCGT--A-TCTA----------CTA-AACTT-CTTTAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5334 : ATA-TAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTAATTACATGTACTA-CACTT-CTTTAATTT-C--TTC-GTAATT-A-GCA-A-A-TAT-G-----ACGC-TAGCATTC-TAATCTTTTTT
gi|5335 : ACA-GAACAAAA--AT--C-TAATTC-A--T--TAAT------GT--A-TTTA----------CTT-CACTT-CTTCAATTT-C--TTA-TTAATT-A-TCA-A-A-TAT-G-----GTGC-TA-CATTC-TAATCTTTTTT
gi|5336 : ACA-GAACAAAA--ATATC-TAATTA-A--T--TAT-------GT--A-TTTA----------CTTTCACTTTCTTCCAATT-C--TTACTTAATT-A-TCA-ACA-TAT-A-----GTGC-TACGATTC-TAATCTTTTT
gi|5337 : ATA-AAACAAAA---T--C-TGATTC-A--T--TAAA------GT--AATTTA----------CTA-CGCTT-CT-CAATTTTC--TTAATTAATT-A-GCT-A-A-TAT-G-----GCAC-TAGCATTC-TAATCTTTTTT
gi|5338 : ATATAAACAAAA--TT--CCTGATTCCA--T--TAAA------GT--T-TTTA----------CTAACACTC-CTTCATTTT-C--TTA-TTAATTAA-GCA-G-A-TAT-G-----GCGC-TAGCA-TC-TATGCTTTTTT
gi|5339 : ATA-AAA--AAA--AT--C-TGATTC-A--T--TAAA----------------------------------T-CTTCAATTT-C--TTA-TCAATT-C-GTA-C-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5340 : ATATAAACAGAA--AT--C-GGATTC-A--TGGTGAG------AT--A-TTTA----------CTA-CA----CTTCAATTT-C--TTA--TAATT-G-GAAGG-A-TAT-GTGCTAGCAT-TCGCATTC-TTATCTTTTTT
gi|5341 : TA-AAACAAAA--AT--C-TTATTC-A--T--GAAA------GT--A-TTTA----------CTA-CACTT-C-------------------ATT-A-GCA-G-A-TAT-G-----ACGC-TAGTATTC-TAATCTTTTTT
gi|5342 : A-AAACAAAA--AT--C-TGAATC-AT-T--TAAA------GTTAA-TTTA----------CTT-CATTC-CTTCAATTT-CCTTTA-TTAATT-AGGCA-G-ATTATGG-----GCGCAGAGCATTCTTCATCTTTCTT
gi|5343 : ACAAAAGAATA-C-TGATTC-AAGT--AAAA------AT--G-TTTG----------CTA-CATTT-CTCTAATTG-C--TTA-TTA-TT-A-GTA-G-A-TAT-G-----GAGC-TAGGATTT-CAATCCTTTT
gi|5344 : ACAAAAGAATA-C-TGATTC-A--G--TAAA-------T--G-TTTG----------CTA-CATTT-CTTCGATTG-C--TTA-TTAATT-A-GTA-G-A-TAT-G-----
gi|5345 : TA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-G-TAT-G-----GTGC-TAGCATTC-TGATCTTTTTT
gi|5346 : TTCAATTT-C--TTA-TTAATT-A-GGA-A-A-TAT-G-----ACGC-TAGCACTG-TAATCTTTTT
Alignments
lowQualScore : 1111111111
lowQualScore : 6 77 99 2 2 66 33 8888888 33 2 1111111111 5 2 2 33 4 2 2 2 2 2 2 55555 2 2
lowQualScore : . .. .. . . .. .. ....... .. . .......... . . . .. . . . . . . . ..... . .
lowQualScore : 2 33 00 7 7 33 77 1111111 77 7 7777777777 0 5 4 22 7 4 4 4 4 4 4 99999 5 5
consensus : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
Reference ( family-927 ) : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5330 : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-TGCTT-CTTCAACTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATTTTTTTT
gi|5331 : ATA-AAACAAAA--AT--A-TGATTG-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-G-GCG-G-A-TAT-G-----GCGC-TAGCATTC-TGATTTTTTTT
gi|5332 : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAT------TT--A-TTTA----------CTA-CACTT-TTTCAATTT-C--TTA-TTAATT-A-TCA-G-A-TAT-G-----GCGC-TAGCATTC-TGATCTTTTT
gi|5333 : ATA-AAACAAAA--AT--C-AGATTC-A--T--TAAATTACGCGT--A-TCTA----------CTA-AACTT-CTTTAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5334 : ATA-TAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTAATTACATGTACTA-CACTT-CTTTAATTT-C--TTC-GTAATT-A-GCA-A-A-TAT-G-----ACGC-TAGCATTC-TAATCTTTTTT
gi|5335 : ACA-GAACAAAA--AT--C-TAATTC-A--T--TAAT------GT--A-TTTA----------CTT-CACTT-CTTCAATTT-C--TTA-TTAATT-A-TCA-A-A-TAT-G-----GTGC-TA-CATTC-TAATCTTTTTT
gi|5336 : ACA-GAACAAAA--ATATC-TAATTA-A--T--TAT-------GT--A-TTTA----------CTTTCACTTTCTTCCAATT-C--TTACTTAATT-A-TCA-ACA-TAT-A-----GTGC-TACGATTC-TAATCTTTTT
gi|5337 : ATA-AAACAAAA---T--C-TGATTC-A--T--TAAA------GT--AATTTA----------CTA-CGCTT-CT-CAATTTTC--TTAATTAATT-A-GCT-A-A-TAT-G-----GCAC-TAGCATTC-TAATCTTTTTT
gi|5338 : ATATAAACAAAA--TT--CCTGATTCCA--T--TAAA------GT--T-TTTA----------CTAACACTC-CTTCATTTT-C--TTA-TTAATTAA-GCA-G-A-TAT-G-----GCGC-TAGCA-TC-TATGCTTTTTT
gi|5339 : ATA-AAA--AAA--AT--C-TGATTC-A--T--TAAA----------------------------------T-CTTCAATTT-C--TTA-TCAATT-C-GTA-C-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5340 : ATATAAACAGAA--AT--C-GGATTC-A--TGGTGAG------AT--A-TTTA----------CTA-CA----CTTCAATTT-C--TTA--TAATT-G-GAAGG-A-TAT-GTGCTAGCAT-TCGCATTC-TTATCTTTTTT
gi|5341 : TA-AAACAAAA--AT--C-TTATTC-A--T--GAAA------GT--A-TTTA----------CTA-CACTT-C-------------------ATT-A-GCA-G-A-TAT-G-----ACGC-TAGTATTC-TAATCTTTTTT
gi|5342 : A-AAACAAAA--AT--C-TGAATC-AT-T--TAAA------GTTAA-TTTA----------CTT-CATTC-CTTCAATTT-CCTTTA-TTAATT-AGGCA-G-ATTATGG-----GCGCAGAGCATTCTTCATCTTTCTT
gi|5343 : ACAAAAGAATA-C-TGATTC-AAGT--AAAA------AT--G-TTTG----------CTA-CATTT-CTCTAATTG-C--TTA-TTA-TT-A-GTA-G-A-TAT-G-----GAGC-TAGGATTT-CAATCCTTTT
gi|5344 : ACAAAAGAATA-C-TGATTC-A--G--TAAA-------T--G-TTTG----------CTA-CATTT-CTTCGATTG-C--TTA-TTAATT-A-GTA-G-A-TAT-G-----
gi|5345 : TA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-G-TAT-G-----GTGC-TAGCATTC-TGATCTTTTTT
gi|5346 : TTCAATTT-C--TTA-TTAATT-A-GGA-A-A-TAT-G-----ACGC-TAGCACTG-TAATCTTTTT
blockSeqs : T GA AT C C AG GG TTACGCG TA A ATTACATGTA T T T CT C A G G C T G TGCTA A T
blockSeqs : T GA A . . T . G . . . A . . . A . . . . . . . . .
blockSeqs : . . A . . . . T . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqCons :
originalCons : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
finalCons : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
Alignments
lowQualScore : 1111111111
lowQualScore : 6 77 99 2 2 66 33 8888888 33 2 1111111111 5 2 2 33 4 2 2 2 2 2 2 55555 2 2
lowQualScore : . .. .. . . .. .. ....... .. . .......... . . . .. . . . . . . . ..... . .
lowQualScore : 2 33 00 7 7 33 77 1111111 77 7 7777777777 0 5 4 22 7 4 4 4 4 4 4 99999 5 5
consensus : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
Reference ( family-927 ) : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5330 : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTA----------CTA-TGCTT-CTTCAACTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATTTTTTTT
gi|5331 : ATA-AAACAAAA--AT--A-TGATTG-A--T--TAAA------GT--A-TTTA----------CTA-CACTT-CTTCAATTT-C--TTA-TTAATT-G-GCG-G-A-TAT-G-----GCGC-TAGCATTC-TGATTTTTTTT
gi|5332 : ATA-AAACAAAA--AT--C-TGATTC-A--T--TAAT------TT--A-TTTA----------CTA-CACTT-TTTCAATTT-C--TTA-TTAATT-A-TCA-G-A-TAT-G-----GCGC-TAGCATTC-TGATCTTTTT
gi|5333 : ATA-AAACAAAA--AT--C-AGATTC-A--T--TAAATTACGCGT--A-TCTA----------CTA-AACTT-CTTTAATTT-C--TTA-TTAATT-A-GCA-G-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5334 : ATA-TAACAAAA--AT--C-TGATTC-A--T--TAAA------GT--A-TTTAATTACATGTACTA-CACTT-CTTTAATTT-C--TTC-GTAATT-A-GCA-A-A-TAT-G-----ACGC-TAGCATTC-TAATCTTTTTT
gi|5335 : ACA-GAACAAAA--AT--C-TAATTC-A--T--TAAT------GT--A-TTTA----------CTT-CACTT-CTTCAATTT-C--TTA-TTAATT-A-TCA-A-A-TAT-G-----GTGC-TA-CATTC-TAATCTTTTTT
gi|5336 : ACA-GAACAAAA--ATATC-TAATTA-A--T--TAT-------GT--A-TTTA----------CTTTCACTTTCTTCCAATT-C--TTACTTAATT-A-TCA-ACA-TAT-A-----GTGC-TACGATTC-TAATCTTTTT
gi|5337 : ATA-AAACAAAA---T--C-TGATTC-A--T--TAAA------GT--AATTTA----------CTA-CGCTT-CT-CAATTTTC--TTAATTAATT-A-GCT-A-A-TAT-G-----GCAC-TAGCATTC-TAATCTTTTTT
gi|5338 : ATATAAACAAAA--TT--CCTGATTCCA--T--TAAA------GT--T-TTTA----------CTAACACTC-CTTCATTTT-C--TTA-TTAATTAA-GCA-G-A-TAT-G-----GCGC-TAGCA-TC-TATGCTTTTTT
gi|5339 : ATA-AAA--AAA--AT--C-TGATTC-A--T--TAAA----------------------------------T-CTTCAATTT-C--TTA-TCAATT-C-GTA-C-A-TAT-G-----GCGC-TAGCATTC-TAATCTTTTTT
gi|5340 : ATATAAACAGAA--AT--C-GGATTC-A--TGGTGAG------AT--A-TTTA----------CTA-CA----CTTCAATTT-C--TTA--TAATT-G-GAAGG-A-TAT-GTGCTAGCAT-TCGCATTC-TTATCTTTTTT
gi|5341 : TA-AAACAAAA--AT--C-TTATTC-A--T--GAAA------GT--A-TTTA----------CTA-CACTT-C-------------------ATT-A-GCA-G-A-TAT-G-----ACGC-TAGTATTC-TAATCTTTTTT
gi|5342 : A-AAACAAAA--AT--C-TGAATC-AT-T--TAAA------GTTAA-TTTA----------CTT-CATTC-CTTCAATTT-CCTTTA-TTAATT-AGGCA-G-ATTATGG-----GCGCAGAGCATTCTTCATCTTTCTT
gi|5343 : ACAAAAGAATA-C-TGATTC-AAGT--AAAA------AT--G-TTTG----------CTA-CATTT-CTCTAATTG-C--TTA-TTA-TT-A-GTA-G-A-TAT-G-----GAGC-TAGGATTT-CAATCCTTTT
gi|5344 : ACAAAAGAATA-C-TGATTC-A--G--TAAA-------T--G-TTTG----------CTA-CATTT-CTTCGATTG-C--TTA-TTAATT-A-GTA-G-A-TAT-G-----
gi|5345 : TA-CACTT-CTTCAATTT-C--TTA-TTAATT-A-GCA-G-G-TAT-G-----GTGC-TAGCATTC-TGATCTTTTTT
gi|5346 : TTCAATTT-C--TTA-TTAATT-A-GGA-A-A-TAT-G-----ACGC-TAGCACTG-TAATCTTTTT