lowQualScore : 11111111111 22
lowQualScore : 6 33 2 33 2 2 444 11111111111 5 555 3 3 3 33
lowQualScore : . .. . .. . . ... ........... . ... . . . ..
lowQualScore : 0 77 5 44 5 5 444 99999999999 7 444 3 3 3 88
consensus : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AA-----------ATT-GCGAAAAAT---TTTACTC-AATACT-GAG-ATA-AATTTTT
Reference ( gi|96194 ) : TCTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AA-----------ATT-GCGAAAAAT---TTTACTC-AATACT-GAG-AT--AATTTTT
gi|96196 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AA-----------ATT-GCGAAAATT---TTTACTC-AATACT-GAA-ATA-AATTTTT
gi|96195 : TTTATGCTTTC--CTCCTTCATTT-TACA--ACAC-AAACTCCGA-CTG---AA-----------ATT-GCGAAAAAT---TTTACTC-AATACT-GAG-AT--AAt
gi|96198 : TTTATGCCTTC--CTCCTTCATTT-TACA--AC-C-AAACACCGA-CTG---AA-----------ATT-GCGAAAAAA---TTTACTC-AATACT-GAG-ATA-AATTTTTaatt
gi|96197 : TTTATGCCTTT--CTCCTTCATTT-TACA--ACAC-AAACACCGA-GTG---AA-----------ATT-CCGAAAAAT---TTTACTC-AATACT-GAG-AT--AAt
gi|96200 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACA--AAACACCGA--TGAACAA-----------ATTGGCGAAAAAT---TTTACTCAAATACT-GAG-ATA-AATTTTTaattctt
gi|96199 : TTTATCCCTTC--CTCCTTCATTT-TAC---ACACAAAACACCGA-CTG---AA-----------ATC-GCGAAAAA----TTTACTC-ATAACT-GAG-ATAAAATTTTT
gi|96201 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACGC-AAACA-CGA-CTT---AA-----------ATT-G---AAAAT---TTTACTC-AATACTAGAGCAT--AA
gi|96202 : TTTATGCCTAC--CTCCTTCATTT-AACA--ACAC-AAACACCGA-CTG---AA-----------ATT-GCGAAAAATATATTTAaattt
gi|96203 : TTTATGCCTTC--CTCTTTCATTG-TACA--ACTC-AAACACCGA-TTG---GA-----------ATA-GC-AAATAT---TTTACTC-AAAACT-TAG-AG--AA
gi|96205 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AA-----------ATaaatt
gi|96204 : TTTATGCTTCCATCTCCT-CATTT--ACAGCACAC-AAACAC-GA-CTG---AA------------TT-GCGACCAAT---TTTA-TC-AATACT-GAG-ATAAAATTTTT
gi|96206 : TTTATGCCTTC--CTCC-TCAGTT-TACA--ACAC--AACA-CGATCTG---AA-----------ATTCGCGA
gi|96207 : TATGCCTTC--CTCCTTAATCA-TACA--ACAC-AAACACCAA-TTG---AT-----------GTT-GCAAAACAT---TTTACTC-AATACT-GAG-AT--
gi|96208 : TATGCCTTC--TTCCATCGTCA-TACA--ACAC-AAACACCGA-TTG---AA-----------Acaa
gi|96209 : TT--CTCCTGCATTAATACA--AAAC-AAACACCGA-CTG---AAAATCCTCAAATATT-GCCAAAAAT---TTTACGC-AATACT--AG-GTAAAATTTTT
gi|96210 : CCTTCACTG-TACA--ACAC-AAACAACGA-TTG---GA-----------ATT-GCGAAAAAT---TTTACTC-AAAACT-GAG-AT--AA
Alignments
lowQualScore : 11111111111 1
lowQualScore : 33 2 33 2 2 444 11111111111 5 555 3 77 3 2
lowQualScore : .. . .. . . ... ........... . ... . .. . .
lowQualScore : 44 4 22 4 4 111 22222222222 3 000 1 33 1 3
consensus : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
Reference ( family-926 ) : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
gi|96194 : TCTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT--AATTTTT
gi|96195 : TTTATGCTTTC--CTCCTTCATTT-TACA--ACAC-AAACTCCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAAATT
gi|96196 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAATT---TTTACTC-AATACT--GAA-AT-AAATTTTT
gi|96197 : TTTATGCCTTT--CTCCTTCATTT-TACA--ACAC-AAACACCGA-GTG---AAA-----------TT-CCGAAAAAT---TTTACTC-AATACT--GAG-ATAAAATTCTTt
gi|96198 : TTTATGCCTTC--CTCCTTCATTT-TACA--AC-C-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAA---TTTACTC-AATACT--GAG-AT-AAATTTTT
gi|96199 : TTTATCCCTTC--CTCCTTCATTT-TAC---ACACAAAACACCGA-CTG---AAA-----------TC-GCGAAAAA----TTTACTC-ATAACT--GAG-ATAAAATTTTTt
gi|96200 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACA--AAACACCGA--TGAACAAA-----------TTGGCGAAAAAT---TTTACTCAAATACT--GAG-AT-AAATTTTT
gi|96201 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACGC-AAACA-CGA-CTT---AAA-----------TT-G---AAAAT---TTTACTC-AATACTA-GAGCAT-AAAATTT
gi|96202 : TTTATGCCTAC--CTCCTTCATTT-AACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAATATATTTA
gi|96203 : TTTATGCCTTC--CTCTTTCATTG-TACA--ACTC-AAACACCGA-TTG---GAA-----------TA-GC-AAATAT---TTTACTC-AAAACTTAGAG-AA-AAATT
gi|96204 : TTTATGCTTCCATCTCCT-CATTT--ACAGCACAC-AAACAC-GA-CTG---AA------------TT-GCGACCAAT---TTTA-TC-AATACT--GAG-ATAAAATTTTT
gi|96205 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------T
gi|96206 : TTTATGCCTTC--CTCC-TCAGTT-TACA--ACAC--AACA-CGATCTG---AAA-----------TTCGCGA
gi|96207 : TATGCCTTC--CTCCTTAATCA-TACA--ACAC-AAACACCAA-TTG---ATG-----------TT-GCAAAACAT---TTTACTC-AATACT--GAG-AT-
gi|96208 : TATGCCTTC--TTCCATCGTCA-TACA--ACAC-AAACACCGA-TTG---AAA-----------caa
gi|96209 : TT--CTCCTGCATTAATACA--AAAC-AAACACCGA-CTG---AAAATCCTCAAATATT-GCCAAAAAT---TTTACGC-AATACT---AG-GTAAAATTTTT
gi|96210 : CCTTCACTG-TACA--ACAC-AAACAACGA-TTG---GAA-----------TT-GCGAAAAAT---TTTACTC-AAAACT--GAG-AT-AA
Alignments
lowQualScore : 11111111111 1
lowQualScore : 33 2 33 2 2 444 11111111111 5 555 3 77 3 2
lowQualScore : .. . .. . . ... ........... . ... . .. . .
lowQualScore : 44 4 22 4 4 111 22222222222 3 000 1 33 1 3
consensus : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
Reference ( family-926 ) : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
gi|96194 : TCTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT--AATTTTT
gi|96195 : TTTATGCTTTC--CTCCTTCATTT-TACA--ACAC-AAACTCCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAAATT
gi|96196 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAATT---TTTACTC-AATACT--GAA-AT-AAATTTTT
gi|96197 : TTTATGCCTTT--CTCCTTCATTT-TACA--ACAC-AAACACCGA-GTG---AAA-----------TT-CCGAAAAAT---TTTACTC-AATACT--GAG-ATAAAATTCTTt
gi|96198 : TTTATGCCTTC--CTCCTTCATTT-TACA--AC-C-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAA---TTTACTC-AATACT--GAG-AT-AAATTTTT
gi|96199 : TTTATCCCTTC--CTCCTTCATTT-TAC---ACACAAAACACCGA-CTG---AAA-----------TC-GCGAAAAA----TTTACTC-ATAACT--GAG-ATAAAATTTTTt
gi|96200 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACA--AAACACCGA--TGAACAAA-----------TTGGCGAAAAAT---TTTACTCAAATACT--GAG-AT-AAATTTTT
gi|96201 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACGC-AAACA-CGA-CTT---AAA-----------TT-G---AAAAT---TTTACTC-AATACTA-GAGCAT-AAAATTT
gi|96202 : TTTATGCCTAC--CTCCTTCATTT-AACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAATATATTTA
gi|96203 : TTTATGCCTTC--CTCTTTCATTG-TACA--ACTC-AAACACCGA-TTG---GAA-----------TA-GC-AAATAT---TTTACTC-AAAACTTAGAG-AA-AAATT
gi|96204 : TTTATGCTTCCATCTCCT-CATTT--ACAGCACAC-AAACAC-GA-CTG---AA------------TT-GCGACCAAT---TTTA-TC-AATACT--GAG-ATAAAATTTTT
gi|96205 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------T
gi|96206 : TTTATGCCTTC--CTCC-TCAGTT-TACA--ACAC--AACA-CGATCTG---AAA-----------TTCGCGA
gi|96207 : TATGCCTTC--CTCCTTAATCA-TACA--ACAC-AAACACCAA-TTG---ATG-----------TT-GCAAAACAT---TTTACTC-AATACT--GAG-AT-
gi|96208 : TATGCCTTC--TTCCATCGTCA-TACA--ACAC-AAACACCGA-TTG---AAA-----------caa
gi|96209 : TT--CTCCTGCATTAATACA--AAAC-AAACACCGA-CTG---AAAATCCTCAAATATT-GCCAAAAAT---TTTACGC-AATACT---AG-GTAAAATTTTT
gi|96210 : CCTTCACTG-TACA--ACAC-AAACAACGA-TTG---GAA-----------TT-GCGAAAAAT---TTTACTC-AAAACT--GAG-AT-AA
blockSeqs : AT A GC A T AAC ATCCTCAAATA G ATA A TA C A
blockSeqs : . . . . . . . C . . A . A
blockSeqs : . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . A
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqCons :
originalCons : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
finalCons : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
Alignments
lowQualScore : 11111111111 1
lowQualScore : 33 2 33 2 2 444 11111111111 5 555 3 77 3 2
lowQualScore : .. . .. . . ... ........... . ... . .. . .
lowQualScore : 44 4 22 4 4 111 22222222222 3 000 1 33 1 3
consensus : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
Reference ( family-926 ) : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAATTTTT
gi|96194 : TCTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT--AATTTTT
gi|96195 : TTTATGCTTTC--CTCCTTCATTT-TACA--ACAC-AAACTCCGA-CTG---AAA-----------TT-GCGAAAAAT---TTTACTC-AATACT--GAG-AT-AAAATT
gi|96196 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAATT---TTTACTC-AATACT--GAA-AT-AAATTTTT
gi|96197 : TTTATGCCTTT--CTCCTTCATTT-TACA--ACAC-AAACACCGA-GTG---AAA-----------TT-CCGAAAAAT---TTTACTC-AATACT--GAG-ATAAAATTCTTt
gi|96198 : TTTATGCCTTC--CTCCTTCATTT-TACA--AC-C-AAACACCGA-CTG---AAA-----------TT-GCGAAAAAA---TTTACTC-AATACT--GAG-AT-AAATTTTT
gi|96199 : TTTATCCCTTC--CTCCTTCATTT-TAC---ACACAAAACACCGA-CTG---AAA-----------TC-GCGAAAAA----TTTACTC-ATAACT--GAG-ATAAAATTTTTt
gi|96200 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACA--AAACACCGA--TGAACAAA-----------TTGGCGAAAAAT---TTTACTCAAATACT--GAG-AT-AAATTTTT
gi|96201 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACGC-AAACA-CGA-CTT---AAA-----------TT-G---AAAAT---TTTACTC-AATACTA-GAGCAT-AAAATTT
gi|96202 : TTTATGCCTAC--CTCCTTCATTT-AACA--ACAC-AAACACCGA-CTG---AAA-----------TT-GCGAAAAATATATTTA
gi|96203 : TTTATGCCTTC--CTCTTTCATTG-TACA--ACTC-AAACACCGA-TTG---GAA-----------TA-GC-AAATAT---TTTACTC-AAAACTTAGAG-AA-AAATT
gi|96204 : TTTATGCTTCCATCTCCT-CATTT--ACAGCACAC-AAACAC-GA-CTG---AA------------TT-GCGACCAAT---TTTA-TC-AATACT--GAG-ATAAAATTTTT
gi|96205 : TTTATGCCTTC--CTCCTTCATTT-TACA--ACAC-AAACACCGA-CTG---AAA-----------T
gi|96206 : TTTATGCCTTC--CTCC-TCAGTT-TACA--ACAC--AACA-CGATCTG---AAA-----------TTCGCGA
gi|96207 : TATGCCTTC--CTCCTTAATCA-TACA--ACAC-AAACACCAA-TTG---ATG-----------TT-GCAAAACAT---TTTACTC-AATACT--GAG-AT-
gi|96208 : TATGCCTTC--TTCCATCGTCA-TACA--ACAC-AAACACCGA-TTG---AAA-----------caa
gi|96209 : TT--CTCCTGCATTAATACA--AAAC-AAACACCGA-CTG---AAAATCCTCAAATATT-GCCAAAAAT---TTTACGC-AATACT---AG-GTAAAATTTTT
gi|96210 : CCTTCACTG-TACA--ACAC-AAACAACGA-TTG---GAA-----------TT-GCGAAAAAT---TTTACTC-AAAACT--GAG-AT-AA