lowQualScore : 22222 11 111 11 1 2222222 11111 111 1111 22222 1111 22222
lowQualScore : 3 44 6666 1 1 6 3 4 3 7777 55 4 77 3 7 66 3 5 44 4 4 4 777 777 8 4 2 8 4 999 00000 4 4 55 88 555 5 444 66 00 2 555 3 7 3 3333333 3 88888 000 3 7 4444 3 3 7 77777 3 3333 666 00000 4 4 1
lowQualScore : . .. .... . . . . . . .... .. . .. . . .. . . .. . . . ... ... . . . . . ... ..... . . .. .. ... . ... .. .. . ... . . . ....... . ..... ... . . .... . . . ..... . .... ... ..... . . .
lowQualScore : 6 66 3333 2 2 7 6 4 6 7777 00 3 33 6 3 00 6 4 88 0 0 0 000 000 0 0 5 0 0 333 77777 0 0 55 00 999 8 000 55 00 7 555 6 3 6 6666666 6 22222 888 6 3 5555 6 6 3 33333 6 3333 666 00000 4 4 1
consensus : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGGTGTCACC---ATTTAAATTAG--AGTTANCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA--AATA-GAATGCTCCAAGGC-GTTT----GA-GTG---GGG-A-GT-----CAAACGG-CT-TGCGTGACC
Reference ( gi|29695 ) : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA--GATA-GAATGCTCCAAGGC-GTTT----CA-GTG---GGG-A-GT-----CAAACGG-CT-TGCGTGACC
gi|29696 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCAC-AAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTCTT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-A---TT-TA--GATA-GAATGCTCCAAGGC-GTTT----CA-GTG---GGG-AGGT-----CAAACGG-CT-TGCGTGACC
gi|29697 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAT-AAGTCATGCAGATTTCACGTG----ATG--TGAAC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACAGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTAAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-CA--AATA-GAATGCTCCAAGGC-GTTT----GA-GTG---GGG-A-GT-----CAAGCGG-CT-TGCGTGACC
gi|29698 : TGGAAAATC-GCCATT--C----------------TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-TA-ATGAAGAATTAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGCTTATTTG-GG-ATAT-G-GTCAC--AAATGAAGGTTTG-TT-GTA--ATCCGGATGTTT-TTTT------------CC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA--AATA-TAATGCTCCAAGGC-GTTT----GA-GTA---GGG-A-GT-----CAAACCG-CT-TGCATGACC
gi|29699 : TGGAAAATTTGCCATTTTCTA-CGACGAAAT--ACTGTTT-AA-AAGTCATGCAGAATTCAGTTG----ATT--TCAGC-ATA-TGTCCACT-A-TCTATTTAAATTAA-ATGAAGAATCAAGTGAAGA-A---T-ACCGAAT----AT---A-AAG-T-TTAATTTG-TG-ATATTG-GTCACAAAAATTA----TT--TT-GTA--ATCCGAAT--------TC-----ATGTCACA---ATTAAAAATA-----TTAACAATC-TCTTTAA-T-GCGTC-T-------CTGTCGT-----ATTGTAA-TTATACTT-TA--AATA-GAATG--CCAAGGC--TTT----GATGT----GGG-A-GT---------CGG-CTCTGCGTGACC
gi|29700 : TGGAAAATC-ACCACT--CTA-C--CGAAAT-----GTTTAAA-AAGTCATGCAGAGTTCACG
gi|29701 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-T
gi|29702 : GGAAAATC-GCCATT--CTAGC--CG-AATTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--T-AGA-AT--T--CCACT-GATTGATTCAAAT-TA-ATGAAGAATC-AGTCAAGA-AC-TT-ACGGAAT---TAT---ATACG-TGTTTATTTGTGG-ATAT-ATGTCACAAA----AAGGTTTGTTT-GTA--ATCCGAATGTTGCTTTTCTCTTGGTGTCTCC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCC-T-------CC--CGT-----GGTGTAACT-AT-TTTCTA--AATA-GAATGCTCCA--GCGGTTT----GA-GT----GGG-A-GT-----CAAACGGCCT-TGCGTG
gi|29703 : GGAAAATC-GCCAT---CTA-G--CGAA-TTGA-TGTTTGAA-A-GTCATGC-GATTT-ACGTG----ATG--TTAG--A-A-TCGC-ACTGAATTGATTCAAAT-AA-ATGAAGAAC--AGTCAAGA-AC-TTTACGGAATGTATAT---A-ACG-TGTTTTTTTG-GATATAT-A-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTT--TTTTCT-CTGGTGTT-CC---AT-----TTAG--AGTTA-CG--TGTCTTTAA-TAGCGCC-G-------TC-T-GT-----GGTGTAACT-AT-TTT-TA--AATA-GAATGCTCCAGCGC-GTTTG---GA-GTG---GGG-A-GT-----CAAACGG-CT-TGCGTG
gi|29704 : GGAAAATC-GCCATT--CTA-G--CGAA-TTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--TTAG--AT--TCGC-ACT-GATTTATTCAAAT-AATATGAAGAAC--AGTCAAGA-ATGTT-ACGGAAT---TAT---ATACG-T-TTTATTTGTGG-ATAT-ATGTCACAAA---GAAGGTTTG-TTTGTA--ATCCGAATGTT--TTTTCT-CTGGTGTT-CC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCCGT-------C---CGT-----GGTGTAC-T-AT-TTTCTA--AATAGGAATGCTCCA--GCGGTTT----GA-GTG---GG
gi|29705 : GAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AATTCATGAAGGTTACACGTG----ATG--TCAGC-ATA-TCGACACT-AATTTATTTTAAT-AA-ATGAAGAATCAAATTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TCTTTATCTG-GC-ATAT-G-GTCAC--AAATAAAGGTTTG-TA-GTA--ATCCGACTGTTTGTTTTCT-TTGGTTTCACC---ATTTAAATTAG--AATTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA--AATA-GAATGCTCCAAAGC-GTTT----GA-GTG---GGG-A-GT-----CAA
gi|29706 : AAATC-GCCATT--CAA-A--CGAAATTGAGTGTT--GA-AAGTCATGCAGATTTC-CGTG----ATGATCCAGCAATAGTCG-CACT-GACATATTT-AAT---------------AGTTAAGACAC-TT-ACGGAAA---TATAAAA-ACGATG-TTATTTG-CG-A-AT-C-ATCAC--AAATGAAGGTTTG-TT-GTAATATCTGAAT
gi|29707 : TT--CTT-C--AAAAATTAT-TGTTTGAATAAGACCTGCAGAATTCAAGTGTCTGATA--T------TA-TTGCCACT-AATTTCTTTAAAC-CA-ATGAATGACCAACTTAGGA-AC-TT-ACAGAAA---GGT---A-ATT-TGTATATTTG-GG-AGAT-G-GTCAC---AATATAGGTTTG-TT-GCA--AT
gi|29708 : GTG----ATG--TCAGC-ATA-TCGCCACTGAATTTATTCAAAT-AA-ATGAAGAATCAAGT
gi|29710 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCG-TA-GAATGCTCCTAGAC-GTTTGTCGCA-GAGCACGGC-T-GTATTGACAAACGG-CT-AG-GTGACC
gi|29709 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCG-TA-GAATGCTCCTAGAC-GTTTGTCGCA-GAGCACGGC-T-GTATTGACAAACGG-CT-AG-GTGACC
gi|29711 : TTAG--AGTTAACG--T-TCTTGAA-ACACGAC-A-------CC-TCGC-----GGTGAAA-T-TT-TTT-T-----TC-G-ATGTTCCATGGC-GT---------ATG---AAGCC-GT-----CAGACGA-CT-TGCGTGACC
Alignments
lowQualScore : 11 11 111 1 2222222 11111 1 1111 111 11111
lowQualScore : 3 44 5555 0 0 6 3 3 2 7777 44 3 55 3 6 3 1 3 22 3 3 3 6666 666 7 3 1 7 3 3 7 8 55 3 3 55 11 4 1 4 222 99 0 44 3 6 3 1111111 3 66666 0 3 6 6 3 2 6 3 4444 555 3 88888 4 4
lowQualScore : . .. .... . . . . . . .... .. . .. . . . . . .. . . . .... ... . . . . . . . . .. . . .. .. . . . ... .. . .. . . . ....... . ..... . . . . . . . . .... ... . ..... . .
lowQualScore : 3 22 0000 4 4 2 3 2 5 1111 66 1 88 3 7 3 4 3 88 6 6 6 5555 444 3 6 4 3 6 6 3 8 22 6 6 00 22 4 0 5 777 22 8 66 3 7 3 7777777 3 77777 0 3 7 7 3 6 7 3 2222 000 6 22222 0 0
consensus : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAA-TAA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATA-TG-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-TAT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
Reference ( family-923 ) : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAA-TAA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATA-TG-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGGTGTCACC---ATTTAAATTAG--AGTTANCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-TAT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29695 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAA-TAA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATA-TG-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-TAT-TTT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29696 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAA-TAA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATA-TG-GTCAC-AAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTCTT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-TA---TT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGAGGT-----CAAACGG-CT-TGCGTGACC
gi|29697 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAT-AAGTCATGCAGATTTCACGTG----ATG--TGAAC-ATA-TCGCCACT-AATTTATTTAAA-TAA-ATGAAGAATCAAGTTAAGA-AC-TT-ACAGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATA-TG-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTAAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-TAT-TTT-CA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAGCGG-CT-TGCGTGACC
gi|29698 : TGGAAAATC-GCCATT--C----------------TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAA-TTA-ATGAAGAATTAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGCTTATTTG-GG-ATA-TG-GTCAC--AAATGAAGGTTTG-TT-GTA--ATCCGGATGTTT-TTTT------------CC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-TAT-TTT-TA-AATA-TAATGCTCCAAGGC-GTTT-G----AGTA---GGGA-GT-----CAAACCG-CT-TGCATGACC
gi|29699 : TGGAAAATTTGCCATTTTCTA-CGACGAAAT--ACTGTTT-AA-AAGTCATGCAGAATTCAGTTG----ATT--TCAGC-ATA-TGTCCACT--ATCTATTTAAATTAA-ATGAAGAATCAAGTGAAGA-A---T-ACCGAA----TAT---A-AAG-T-TTAATTTG-TG-ATATTG-GTCACAAAAATTA---TT---TT-GTA--ATCCGAA--------TTC-----ATGTCACA---ATTAAAAATA-----TTAACAATC-TCTTTAA-T-GCGTC-T-------CTGTCGT-----ATTGTAATTATACTT-TA-AATA-GAATG--CCAAGGC--TTT-G----A-TGT--GGGA-GT---------CGG-CTCTGCGTGACC
gi|29700 : TGGAAAATC-ACCACT--CTA-C--CGAAAT-----GTTTAAA-AAGTCATGCAGAGTTCACG
gi|29701 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-T
gi|29702 : GGAAAATC-GCCATT--CTAGC--CG-AATTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--T-AGA-AT--T--CCACT-GATTGATTCAAA-TTA-ATGAAGAATC-AGTCAAGA-AC-TT-ACGGAAT---TAT---ATACG-TGTTTATTTGTGG-ATA-TATGTCACAAA----AAGGTTTGTTT-GTA--ATCCGAATGTTGCTTTTCTCTTGGTGTCTCC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCC-T-------CC--CGT-----GGTGTAACTAT-TTTCTA-AATA-GAATGCTCCA--GCGGTTT-G----AGT----GGGA-GT-----CAAACGGCCT-TGCGTG
gi|29703 : GGAAAATC-GCCAT---CTA-G--CGAA-TTGA-TGTTTGAA-A-GTCATGC-GATTT-ACGTG----ATG--TTAG--A-A-TCGC-ACTGAATTGATTCAAA-TAA-ATGAAGAAC--AGTCAAGA-AC-TTTACGGAATGTATAT---A-ACG-TGTTTTTTTG-GATATA-TA-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTTT--TTTCT-CTGGTGTT-CC---ATTTA-----G--AGTTA-CG--TGTCTTTAA-TAGCGCC-G-------TC-T-GT-----GGTGTAACTAT-TTT-TA-AATA-GAATGCTCCAGCGC-GTTTGG----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTG
gi|29704 : GGAAAATC-GCCATT--CTA-G--CGAA-TTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--TTAG--AT--TCGC-ACT-GATTTATTCAAA-TAATATGAAGAAC--AGTCAAGA-ATGTT-ACGGAAT---TAT---ATACG-T-TTTATTTGTGG-ATA-TATGTCACAAA---GAAGGTTTG-TTTGTA--ATCCGAATGTT--TTTTCT-CTGGTGTT-CC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCCGT-------C---CGT-----GGTGTAC-TAT-TTTCTA-AATAGGAATGCTCCA--GCGGTTT-G----AGTG---GG
gi|29705 : GAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AATTCATGAAGGTTACACGTG----ATG--TCAGC-ATA-TCGACACT-AATTTATTTTAA-TAA-ATGAAGAATCAAATTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TCTTTATCTG-GC-ATA-TG-GTCACAAA--TAAAGGTTTG-TA-GTA--ATCCGACTGTTTGTTTTCT-TTGGTTTCACC---ATTTAAATTAG--AATTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-TAT-TTT-TA-AATA-GAATGCTCCAAAGC-GTTT-G----AGTG---GGGA-GT-----CAA
gi|29706 : AAATC-GCCATT--CAA-A--CGAAATTGAGTGTT--GA-AAGTCATGCAGATTTC-CGTG----ATGATCCAGCAATAGTCG-CACT-GACATATTT-AA-T--------------AGTTAAGACAC-TT-ACGGAAA---TATAAAA-ACGATG-TTATTTG-CG-A-A-TC-ATCAC--AAATGAAGGTTTG-TT-GTAATATCTGAAT
gi|29707 : TT--CTT-C--AAAAATTAT-TGTTTGAATAAGACCTGCAGAATTCAAGTGTCTGATA--T------TA-TTGCCACT-AATTTCTTTAAA-CCA-ATGAATGACCAACTTAGGA-AC-TT-ACAGAAA---GGT---A-ATT-TGTATATTTG-GG-AGA-TG-GTCAC---AATATAGGTTTG-TT-GCA--AT
gi|29708 : GTG----ATG--TCAGC-ATA-TCGCCACTGAATTTATTCAAA-TAA-ATGAAGAATCAAGT
gi|29709 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA--AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29710 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA--AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29711 : TTAG--AGTTAACG--T-TCTTGAA-ACACGAC-A-------CC-TCGC-----GGTGAAA-TTT-TTT-T----TC-G-ATGTTCCATGGC-GTAT-G----A------AGCC-GT-----CAGACGA-CT-TGCGTGACC
Alignments
lowQualScore : 1111 11 111 2222222 11111 1111 111 11111
lowQualScore : 3 44 5555 0 0 6 3 3 2 7777 44 3 55 3 6 44 3 22 3 3 3 666 666 7 3 1 7 3 777 5555 3 3 55 11 4 4 222 99 6 44 3 6 3 1111111 3 66666 999 3 6 6 3 2 6 3 4444 555 3 88888 4 4
lowQualScore : . .. .... . . . . . . .... .. . .. . . .. . .. . . . ... ... . . . . . ... .... . . .. .. . . ... .. . .. . . . ....... . ..... ... . . . . . . . .... ... . ..... . .
lowQualScore : 3 22 0000 4 4 2 3 2 5 1111 66 1 88 3 7 88 3 88 6 6 6 444 444 3 6 4 3 6 555 0000 6 6 00 22 4 5 777 22 7 66 3 7 3 7777777 3 77777 222 3 7 7 3 6 7 3 2222 000 6 22222 0 0
consensus : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
Reference ( family-923 ) : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29695 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29696 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCAC-AAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTCTT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-A---TT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGAGGT-----CAAACGG-CT-TGCGTGACC
gi|29697 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAT-AAGTCATGCAGATTTCACGTG----ATG--TGAAC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACAGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTAAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-CA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAGCGG-CT-TGCGTGACC
gi|29698 : TGGAAAATC-GCCATT--C----------------TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-TA-ATGAAGAATTAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGCTTATTTG-GG-ATAT-G-GTCAC--AAATGAAGGTTTG-TT-GTA--ATCCGGATGTTT-TTTT------------CC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-TAATGCTCCAAGGC-GTTT-G----AGTA---GGGA-GT-----CAAACCG-CT-TGCATGACC
gi|29699 : TGGAAAATTTGCCATTTTCTA-CGACGAAAT--ACTGTTT-AA-AAGTCATGCAGAATTCAGTTG----ATT--TCAGC-ATA-TGTCCACT-A-TCTATTTAAATTAA-ATGAAGAATCAAGTGAAGA-A---T-ACCGAAT----AT---A-AAG-T-TTAATTTG-TG-ATATTG-GTCACAAAAATTA----TT--TT-GTA--ATCCGAAT--------TC-----ATGTCACA---ATTAAAAATA-----TTAACAATC-TCTTTAA-T-GCGTC-T-------CTGTCGT-----ATTGTAA-TTATACTT-TA-AATA-GAATG--CCAAGGC--TTT-G----A-TGT--GGGA-GT---------CGG-CTCTGCGTGACC
gi|29700 : TGGAAAATC-ACCACT--CTA-C--CGAAAT-----GTTTAAA-AAGTCATGCAGAGTTCACG
gi|29701 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-T
gi|29702 : GGAAAATC-GCCATT--CTAGC--CG-AATTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--T-AGA-AT--T--CCACT-GATTGATTCAAAT-TA-ATGAAGAATC-AGTCAAGA-AC-TT-ACGGAAT---TAT---ATACG-TGTTTATTTGTGG-ATAT-ATGTCACAAA----AAGGTTTGTTT-GTA--ATCCGAATGTTGCTTTTCTCTTGGTGTCTCC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCC-T-------CC--CGT-----GGTGTAACT-AT-TTTCTA-AATA-GAATGCTCCA--GCGGTTT-G----AGT----GGGA-GT-----CAAACGGCCT-TGCGTG
gi|29703 : GGAAAATC-GCCAT---CTA-G--CGAA-TTGA-TGTTTGAA-A-GTCATGC-GATTT-ACGTG----ATG--TTAG--A-A-TCGC-ACTGAATTGATTCAAAT-AA-ATGAAGAAC--AGTCAAGA-AC-TTTACGGAATGTATAT---A-ACG-TGTTTTTTTG-GATATAT-A-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTTT--TTTCT-CTGGTGTT-CC---ATTTA-----G--AGTTAC-G--TGTCTTTAA-TAGCGCC-G-------TC-T-GT-----GGTGTAACT-AT-TTT-TA-AATA-GAATGCTCCAGCGC-GTTTGG----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTG
gi|29704 : GGAAAATC-GCCATT--CTA-G--CGAA-TTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--TTAG--AT--TCGC-ACT-GATTTATTCAAAT-AATATGAAGAAC--AGTCAAGA-ATGTT-ACGGAAT---TAT---ATACG-T-TTTATTTGTGG-ATAT-ATGTCACAAA---GAAGGTTTG-TTTGTA--ATCCGAATGTT--TTTTCT-CTGGTGTT-CC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCCGT-------C---CGT-----GGTGTAC-T-AT-TTTCTA-AATAGGAATGCTCCA--GCGGTTT-G----AGTG---GG
gi|29705 : GAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AATTCATGAAGGTTACACGTG----ATG--TCAGC-ATA-TCGACACT-AATTTATTTTAAT-AA-ATGAAGAATCAAATTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TCTTTATCTG-GC-ATAT-G-GTCAC--AAATAAAGGTTTG-TA-GTA--ATCCGACTGTTTGTTTTCT-TTGGTTTCACC---ATTTAAATTAG--AATTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAAGC-GTTT-G----AGTG---GGGA-GT-----CAA
gi|29706 : AAATC-GCCATT--CAA-A--CGAAATTGAGTGTT--GA-AAGTCATGCAGATTTC-CGTG----ATGATCCAGCAATAGTCG-CACT-GACATATTT-AAT---------------AGTTAAGACAC-TT-ACGGAAA---TATAAAA-ACGATG-TTATTTG-CG-A-AT-C-ATCAC--AAATGAAGGTTTG-TT-GTAATATCTGAAT
gi|29707 : TT--CTT-C--AAAAATTAT-TGTTTGAATAAGACCTGCAGAATTCAAGTGTCTGATA--T------TA-TTGCCACT-AATTTCTTTAAAC-CA-ATGAATGACCAACTTAGGA-AC-TT-ACAGAAA---GGT---A-ATT-TGTATATTTG-GG-AGAT-G-GTCAC---AATATAGGTTTG-TT-GCA--AT
gi|29708 : GTG----ATG--TCAGC-ATA-TCGCCACTGAATTTATTCAAAT-AA-ATGAAGAATCAAGT
gi|29709 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29710 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29711 : TTAG--AGTTAACG--T-TCTTGAA-ACACGAC-A-------CC-TCGC-----GGTGAAA-T-TT-TTT-T----TC-G-ATGTTCCATGGC-GTAT-G----A------AGCC-GT-----CAGACGA-CT-TGCGTGACC
Alignments
lowQualScore : 1111 11 111 2222222 11111 1111 111 11111
lowQualScore : 3 44 5555 0 0 6 3 3 2 7777 44 3 55 3 6 44 3 22 3 3 3 666 666 7 3 1 7 3 777 5555 3 3 55 11 4 4 222 99 6 44 3 6 3 1111111 3 66666 999 3 6 6 3 2 6 3 4444 555 3 88888 4 4
lowQualScore : . .. .... . . . . . . .... .. . .. . . .. . .. . . . ... ... . . . . . ... .... . . .. .. . . ... .. . .. . . . ....... . ..... ... . . . . . . . .... ... . ..... . .
lowQualScore : 3 22 0000 4 4 2 3 2 5 1111 66 1 88 3 7 88 3 88 6 6 6 444 444 3 6 4 3 6 555 0000 6 6 00 22 4 5 777 22 7 66 3 7 3 7777777 3 77777 222 3 7 7 3 6 7 3 2222 000 6 22222 0 0
consensus : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
Reference ( family-923 ) : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29695 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29696 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCAC-AAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTCTT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-A---TT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGAGGT-----CAAACGG-CT-TGCGTGACC
gi|29697 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAT-AAGTCATGCAGATTTCACGTG----ATG--TGAAC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACAGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTAAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-CA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAGCGG-CT-TGCGTGACC
gi|29698 : TGGAAAATC-GCCATT--C----------------TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-TA-ATGAAGAATTAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGCTTATTTG-GG-ATAT-G-GTCAC--AAATGAAGGTTTG-TT-GTA--ATCCGGATGTTT-TTTT------------CC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-TAATGCTCCAAGGC-GTTT-G----AGTA---GGGA-GT-----CAAACCG-CT-TGCATGACC
gi|29699 : TGGAAAATTTGCCATTTTCTA-CGACGAAAT--ACTGTTT-AA-AAGTCATGCAGAATTCAGTTG----ATT--TCAGC-ATA-TGTCCACT-A-TCTATTTAAATTAA-ATGAAGAATCAAGTGAAGA-A---T-ACCGAAT----AT---A-AAG-T-TTAATTTG-TG-ATATTG-GTCACAAAAATTA----TT--TT-GTA--ATCCGAAT--------TC-----ATGTCACA---ATTAAAAATA-----TTAACAATC-TCTTTAA-T-GCGTC-T-------CTGTCGT-----ATTGTAA-TTATACTT-TA-AATA-GAATG--CCAAGGC--TTT-G----A-TGT--GGGA-GT---------CGG-CTCTGCGTGACC
gi|29700 : TGGAAAATC-ACCACT--CTA-C--CGAAAT-----GTTTAAA-AAGTCATGCAGAGTTCACG
gi|29701 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-T
gi|29702 : GGAAAATC-GCCATT--CTAGC--CG-AATTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--T-AGA-AT--T--CCACT-GATTGATTCAAAT-TA-ATGAAGAATC-AGTCAAGA-AC-TT-ACGGAAT---TAT---ATACG-TGTTTATTTGTGG-ATAT-ATGTCACAAA----AAGGTTTGTTT-GTA--ATCCGAATGTTGCTTTTCTCTTGGTGTCTCC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCC-T-------CC--CGT-----GGTGTAACT-AT-TTTCTA-AATA-GAATGCTCCA--GCGGTTT-G----AGT----GGGA-GT-----CAAACGGCCT-TGCGTG
gi|29703 : GGAAAATC-GCCAT---CTA-G--CGAA-TTGA-TGTTTGAA-A-GTCATGC-GATTT-ACGTG----ATG--TTAG--A-A-TCGC-ACTGAATTGATTCAAAT-AA-ATGAAGAAC--AGTCAAGA-AC-TTTACGGAATGTATAT---A-ACG-TGTTTTTTTG-GATATAT-A-GTCACAAA--TGAAGGTTTG-TT-GTA--ATCCGAATGTTT--TTTCT-CTGGTGTT-CC---ATTTA-----G--AGTTAC-G--TGTCTTTAA-TAGCGCC-G-------TC-T-GT-----GGTGTAACT-AT-TTT-TA-AATA-GAATGCTCCAGCGC-GTTTGG----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTG
gi|29704 : GGAAAATC-GCCATT--CTA-G--CGAA-TTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--TTAG--AT--TCGC-ACT-GATTTATTCAAAT-AATATGAAGAAC--AGTCAAGA-ATGTT-ACGGAAT---TAT---ATACG-T-TTTATTTGTGG-ATAT-ATGTCACAAA---GAAGGTTTG-TTTGTA--ATCCGAATGTT--TTTTCT-CTGGTGTT-CC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCCGT-------C---CGT-----GGTGTAC-T-AT-TTTCTA-AATAGGAATGCTCCA--GCGGTTT-G----AGTG---GG
gi|29705 : GAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AATTCATGAAGGTTACACGTG----ATG--TCAGC-ATA-TCGACACT-AATTTATTTTAAT-AA-ATGAAGAATCAAATTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TCTTTATCTG-GC-ATAT-G-GTCAC--AAATAAAGGTTTG-TA-GTA--ATCCGACTGTTTGTTTTCT-TTGGTTTCACC---ATTTAAATTAG--AATTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAAGC-GTTT-G----AGTG---GGGA-GT-----CAA
gi|29706 : AAATC-GCCATT--CAA-A--CGAAATTGAGTGTT--GA-AAGTCATGCAGATTTC-CGTG----ATGATCCAGCAATAGTCG-CACT-GACATATTT-AAT---------------AGTTAAGACAC-TT-ACGGAAA---TATAAAA-ACGATG-TTATTTG-CG-A-AT-C-ATCAC--AAATGAAGGTTTG-TT-GTAATATCTGAAT
gi|29707 : TT--CTT-C--AAAAATTAT-TGTTTGAATAAGACCTGCAGAATTCAAGTGTCTGATA--T------TA-TTGCCACT-AATTTCTTTAAAC-CA-ATGAATGACCAACTTAGGA-AC-TT-ACAGAAA---GGT---A-ATT-TGTATATTTG-GG-AGAT-G-GTCAC---AATATAGGTTTG-TT-GCA--AT
gi|29708 : GTG----ATG--TCAGC-ATA-TCGCCACTGAATTTATTCAAAT-AA-ATGAAGAATCAAGT
gi|29709 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29710 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29711 : TTAG--AGTTAACG--T-TCTTGAA-ACACGAC-A-------CC-TCGC-----GGTGAAA-T-TT-TTT-T----TC-G-ATGTTCCATGGC-GTAT-G----A------AGCC-GT-----CAGACGA-CT-TGCGTGACC
blockSeqs : T TT CGA C T A C TCTG AT C CA G G TA T CA C G T GTA AAA T A G T T TG AAAA T T AT TG C A GTT CC C AT G T G GGATAAG G TTTGG TT A C T G A G G TCGC CAC G ATTGA C C
blockSeqs : . . GC G . A C . . G C . G A . CA . . . . . T . G T . AT AAA . . . TG . A GTT CC C . . T . GGATAAG . TTTGG CT . C T . A G . TCGC CAC . ATTGA . .
blockSeqs : . . C . . A C . . C C . . A . TA . . . . . . . G . . AT AAA . . . GC . A . . C . . . . . . . CT . . . . A . . . T . . . .
blockSeqs : . . C . . A C . . C C . . T . CA . . . . . . . G . . G AAA . . . TG . T . . A . . . . . . . T . . . . A . . . . . . . .
blockSeqs : . . C . . A C . . T C . . T . CA . . . . . . . G . . G AAA . . . T . A . . C . . . . . . . T . . . . G . . . . . . . .
blockSeqs : . . C . . A C . . T A . . A . CA . . . . . . . C . . G AAA . . . T . A . . C . . . . . . . T . . . . A . . . . . . . .
blockSeqs : . . G . . A C . . C C . . A . CA . . . . . . . G . . A AA . . . . . A . . G . . . . . . . T . . . . A . . . . . . . .
blockSeqs : . . G . . A C . . C C . . A . C . . . . . . . G . . G AA . . . . . . . . G . . . . . . . T . . . . A . . . . . . . .
blockSeqs : . . C . . . . . . C . . . C . . . . . . . . . . . . C AA . . . . . . A . . . . . . . T . . . . T . . . . . . . .
blockSeqs : . . A . . . . . . . . . . A . . . . . . . . . . . . G A . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : AAA*
originalCons : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
finalCons : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAA-ATGAAGGTTTG-TT-GTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
Alignments
lowQualScore : 1111 11 111 2222222 11111 1111 111 11111
lowQualScore : 3 44 5555 0 0 6 3 3 2 7777 44 3 55 3 0 6 44 3 22 3 3 3 666 666 7 3 1 7 3 777 4 2222 3 7 55 11 4 4 222 99 6 44 3 6 3 1111111 3 66666 999 3 6 6 3 2 6 3 4444 555 3 88888 4 4
lowQualScore : . .. .... . . . . . . .... .. . .. . . . .. . .. . . . ... ... . . . . . ... . .... . . .. .. . . ... .. . .. . . . ....... . ..... ... . . . . . . . .... ... . ..... . .
lowQualScore : 3 22 0000 4 4 2 3 2 5 1111 66 1 88 3 4 7 88 3 88 6 6 6 444 444 3 6 4 3 6 555 4 8888 6 3 00 22 4 5 777 22 7 66 3 7 3 7777777 3 77777 222 3 7 7 3 6 7 3 2222 000 6 22222 0 0
consensus : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAA-TGAAGGTT-TG-TTGTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
Reference ( family-923 ) : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAA-TGAAGGTT-TG-TTGTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29695 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAAATGAAGGTT-TG-TTGTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTGACC
gi|29696 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGGAGAATCAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAAA-TGAAGGTT-TG-TTGTA--ATCCGAATGTTTGTTTCTT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-A---TT-TA-GATA-GAATGCTCCAAGGC-GTTT-C----AGTG---GGGAGGT-----CAAACGG-CT-TGCGTGACC
gi|29697 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAT-AAGTCATGCAGATTTCACGTG----ATG--TGAAC-ATA-TCGCCACT-AATTTATTTAAAT-AA-ATGAAGAATCAAGTTAAGA-AC-TT-ACAGAAT---TAT---A-ACG-TGTTTATTTG-GG-ATAT-G-GTCACAAA--TGAAGGTT-TG-TTGTA--ATCCGAATGTTTGTTTTCT-TTGATGTCACC---ATTTAAATTAG--AGTTACCG--T-TCTTAAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-CA-AATA-GAATGCTCCAAGGC-GTTT-G----AGTG---GGGA-GT-----CAAGCGG-CT-TGCGTGACC
gi|29698 : TGGAAAATC-GCCATT--C----------------TGTTTGAA-AAGTCATGCAGATTTCACGTG----ATG--TCAGC-ATA-TCGCCACT-AATTTATTTAAAT-TA-ATGAAGAATTAAGTTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TGCTTATTTG-GG-ATAT-G-GTCAC-AAA-TGAAGGTT-TG-TTGTA--ATCCGGATGTTT-TTTT------------CC---ATTTAAATTAG--AGTTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-TAATGCTCCAAGGC-GTTT-G----AGTA---GGGA-GT-----CAAACCG-CT-TGCATGACC
gi|29699 : TGGAAAATTTGCCATTTTCTA-CGACGAAAT--ACTGTTT-AA-AAGTCATGCAGAATTCAGTTG----ATT--TCAGC-ATA-TGTCCACT-A-TCTATTTAAATTAA-ATGAAGAATCAAGTGAAGA-A---T-ACCGAAT----AT---A-AAG-T-TTAATTTG-TG-ATATTG-GTCACAAAA------ATTATT-TTGTA--ATCCGAAT--------TC-----ATGTCACA---ATTAAAAATA-----TTAACAATC-TCTTTAA-T-GCGTC-T-------CTGTCGT-----ATTGTAA-TTATACTT-TA-AATA-GAATG--CCAAGGC--TTT-G----A-TGT--GGGA-GT---------CGG-CTCTGCGTGACC
gi|29700 : TGGAAAATC-ACCACT--CTA-C--CGAAAT-----GTTTAAA-AAGTCATGCAGAGTTCACG
gi|29701 : TGGAAAATC-GCCATT--CTA-C--CGAAATTGA-T
gi|29702 : GGAAAATC-GCCATT--CTAGC--CG-AATTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--T-AGA-AT--T--CCACT-GATTGATTCAAAT-TA-ATGAAGAATC-AGTCAAGA-AC-TT-ACGGAAT---TAT---ATACG-TGTTTATTTGTGG-ATAT-ATGTCACAAA----AAGGTT-TGTTTGTA--ATCCGAATGTTGCTTTTCTCTTGGTGTCTCC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCC-T-------CC--CGT-----GGTGTAACT-AT-TTTCTA-AATA-GAATGCTCCA--GCGGTTT-G----AGT----GGGA-GT-----CAAACGGCCT-TGCGTG
gi|29703 : GGAAAATC-GCCAT---CTA-G--CGAA-TTGA-TGTTTGAA-A-GTCATGC-GATTT-ACGTG----ATG--TTAG--A-A-TCGC-ACTGAATTGATTCAAAT-AA-ATGAAGAAC--AGTCAAGA-AC-TTTACGGAATGTATAT---A-ACG-TGTTTTTTTG-GATATAT-A-GTCACAAA--TGAAGGTT-TG-TTGTA--ATCCGAATGTTT--TTTCT-CTGGTGTT-CC---ATTTA-----G--AGTTAC-G--TGTCTTTAA-TAGCGCC-G-------TC-T-GT-----GGTGTAACT-AT-TTT-TA-AATA-GAATGCTCCAGCGC-GTTTGG----AGTG---GGGA-GT-----CAAACGG-CT-TGCGTG
gi|29704 : GGAAAATC-GCCATT--CTA-G--CGAA-TTGA-TGTTTGAA-AAGTCATGC-GATTT-ACGTG----ATG--TTAG--AT--TCG-CACT-GATTTATTCAAAT-AATATGAAGAAC--AGTCAAGA-ATGTT-ACGGAAT---TAT---ATACG-T-TTTATTTGTGG-ATAT-ATGTCACAAA---GAAGGTT-TGTTTGTA--ATCCGAATGTT--TTTTCT-CTGGTGTT-CC---AT-----TTAG--AGTTA-CG--T-TCTTTAATTAGCGCCGT-------C---CGT-----GGTGTAC-T-AT-TTTCTA-AATAGGAATGCTCCA--GCGGTTT-G----AGTG---GG
gi|29705 : GAAAATC-GCCATT--CTA-C--CGAAATTGA-TGTTTGAA-AATTCATGAAGGTTACACGTG----ATG--TCAGC-ATA-TCGACACT-AATTTATTTTAAT-AA-ATGAAGAATCAAATTAAGA-AC-TT-ACGGAAT---TAT---A-ACG-TCTTTATCTG-GC-ATAT-G-GTCAC-AAA-TAAAGGTT-TG-TAGTA--ATCCGACTGTTTGTTTTCT-TTGGTTTCACC---ATTTAAATTAG--AATTACCG--T-TCTTTAA-TAGCGCC-T-------CC-TCGT-----GGTGTAA-T-AT-TTT-TA-AATA-GAATGCTCCAAAGC-GTTT-G----AGTG---GGGA-GT-----CAA
gi|29706 : AAATC-GCCATT--CAA-A--CGAAATTGAGTGTT--GA-AAGTCATGCAGATTTC-CGTG----ATGATCCAGCAATAGTCG-CACT-GACATATTT-AAT---------------AGTTAAGACAC-TT-ACGGAAA---TATAAAA-ACGATG-TTATTTG-CG-A-AT-C-ATCAC-AAA-TGAAGGTT-TG-TTGTAATATCTGAAT
gi|29707 : TT--CTT-C--AAAAATTAT-TGTTTGAATAAGACCTGCAGAATTCAAGTGTCTGATA--T------TA-TTGCCACT-AATTTCTTTAAAC-CA-ATGAATGACCAACTTAGGA-AC-TT-ACAGAAA---GGT---A-ATT-TGTATATTTG-GG-AGAT-G-GTCACAATA-T--AGGTT-TG-TTGCA--AT
gi|29708 : GTG----ATG--TCAGC-ATA-TCGCCACTGAATTTATTCAAAT-AA-ATGAAGAATCAAGT
gi|29709 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29710 : GATGCCACCGTTATTTAAATCAACCAATCAGC---T-GCTTTAT-CAGCATT-TGGATAAGCC-TCGTTTTGGAGTGTAA---AT-TTT-TATCGTA-GAATGCTCCTAGAC-GTTT-GTCGCAGAGCACGGCT-GTATTGACAAACGG-CT-AG-GTGACC
gi|29711 : TTAG--AGTTAACG--T-TCTTGAA-ACACGAC-A-------CC-TCGC-----GGTGAAA-T-TT-TTT-T----TC-G-ATGTTCCATGGC-GTAT-G----A------AGCC-GT-----CAGACGA-CT-TGCGTGACC