lowQualScore : 99999999999999 1
lowQualScore : 1 5 3333 22 22 1 222 99999999999 1 1 3333 1 1 77777777777777 1 9 1
lowQualScore : . . .... .. .. . ... ........... . . .... . . .............. . . .
lowQualScore : 4 7 1111 00 00 6 555 44444444444 4 7 1111 5 5 00000000000000 1 9 8
consensus : AACCCTATTTACACNATATGATT----TGTCA--GA--TGT---GAC--TC--G----CCAC-ATCTGACA----A-A-TCATATCGTGTA----GTAAATAGGAATATCTTATGACA
Reference ( gi|11532 ) : AGCCCTATTTACACGATATGATT----TGTCA--GA--TGT---GAC--TC--G----CCAC-ATCTGACA----A-A-TCATACCGTGTACCGGGTAAATAGGAAAATCATATGACA
gi|11535 : AGCCCTATTTACACGATATGTTT----TGTCA--GA--TGT---GAC--TC--G----CCAC-ATCTGACA----A-A-TCATACCGT-------GTAAATAGGAAAATC
gi|11534 : AGCCCTATTTACACGATATGATT----TGTCA--GA--TGT---GAC--TC--A----CCAC-ATCTGACA----A-A-TCATACCGTGTA
gi|11533 : AGCCCTATTTACACGATATGATT----TGTCA--GA--TGT---GAC--TC--G----CCAC-ATCTGACA----A-A-TCACATCGTGTA
gi|11536 : AGCCCTATTTACACGATATGATT----TTTCA--CA--TCT---GAC--TC--G----CCAC-ATCTGACATTTTA-A-TCATACCGT-------GTAAATAGAAAAATCATAAGACA
gi|11528 : AACCCTATTTGTACAATATGATT----TATCA--GA--TCT---GAC--TC--A----CCAC-ATCTTACA----A-A-TCATGTGATGT--------AATCGGAATATCTAATGACA
gi|11526 : cAACCCTATTTCTACTTTATGAAT----GGTCA--GA--TCT---GAC--TC--GGTCGCCAC-ATCTTACA----A-A-TCATGCGATGT--------AATTGGAAAATCATGTGACA
gi|11531 : acAACCCTATTTGCACTCTATGATT----TGTTA--GA--TCT---GAC--TT--G----CCAC-AAATTACA----A-A-TCAT---GTG----AGAT-AATTGGAATATCTTATGACA
gi|11529 : AACCCTATTTGTACTATATGATT----TATCA--AA--TCT---GAC--TC--G----TCAC-ATCTTACA----A-A-CCATGTGATGT--------AATCGGAATATCTTATCACA
gi|11524 : cAACCCTATTTGTACTATATGATT----TATCA--GATCTCT---GAC--TC--T----CCAC-ATCTTCCA----A-A-TCATGTGATGT--------AATTGGAATATTTTATGACA
gi|11523 : acAACCCTATTTGTACT-TATGATT----TATCA--GA--TCT---GAC--TC--T----CCAC-A-CTTACA----A-A-TCATGTGATGTAT--------TCGGAATATCTTATGACA
gi|11521 : acAACCCTAATTGTACTTTATGATT----TATCA--GA--TCT---GAC--TC--T----CCAC-ACCTTACA----A-A-TCATGTGATGTAT--------TCGGAATATCTTATGACA
gi|11522 : acAACCCTATTTGTACTATATGATT----TATCA--GA--TCT---GAC--TC--T----CCAC-ACCT--TA----A----CATA---TGT----GATGTATCGGAATATCTTATGACA
gi|11530 : acAACCCTATTTGTACAATATGATT----TA-CA---A--TCT---GAC--TC--AGC--CCACAATCTTACA----ATA-TCATGTGATGTATCGG---AATA
gi|11527 : AACCCTATTT-TACTATA-GATT----T-TCAACGA--TCT---GAC--TCT-T----CCAC-ACCGTACA----A-ATTCATttaagaca
gi|11537 : acCCCTATTTGCATGATATGATT----TGTCA--GA--TCT---GAC--TC--G----CCAC-Agtgatctattttggat
gi|11535 : CCTATTTACACGGTATGATT----TGTCA--GA--TGT---GGC--GA--G----TCAC-ATCTGACA----A-A-ACATATCGT-------GTAAATAGG
gi|11536 : agcCTATTTACACGGTATGATTAAAATGTCA--GA--TGT---GGC--GA--G----TCAG-ATGTGAAA----A-A-TCATATCGT-------GTAAATAGGaaaatc
gi|11528 : agcTTACATCACATGATT----TGTAA--GA--TGT---GGT--GA--G----TCAG-ATCTGATA----A-A-TCATAT--TGTAC-----AAATAGGaaaaatcataagaca
gi|11526 : caacTTACATCGCATGATT----TGTAA--GA--TGT---GGCGACCGAG----TCAG-ATCTGACC----A-T-TCATAtcggaatatctaatgaca
gi|11529 : acaaccctatttctacttTTACATCACATGGTT----TGTAA--GA--TGT---GAC--GA--G----TCAG-ATTTGATA----A-A-TCATATA--GTAC-----AAATAGGttggaaaatcatgtgaca
gi|11524 : caacTTACATCACATGATT----TGGAA--GA--TGTGGAGAG--TCA-G------AG-ATCTGATA----A-A-TCATATA--GTAC-----AAATAGGtcggaatatcttatcaca
gi|11525 : acaacTTGTACTAAATGACT----TAT-A--GA--TCT---GAT--TC---------AC-ACCTTACA----A-A-TCA----ATGTAT--GGT-ATTCGGAATATCTTATGACAttggaatattttatgaca
gi|11534 : acaacctaaaTACACGGTATGATT----TGTCA--GA--TGT---GGT--GA--G----TCAC-ATCTGACA----A-A-TCATATCGT-------GTAAATAGG
gi|11533 : agcTACACGATGTGATT----TGTCA--GA--TGT---GGC--GA--G----TCAC-ATCTGACA----A-A-TCATATCGT-------GTAAATAGG
gi|11523 : agcTACATCACATGATT----TGTAA--G---TGT---GGA--GA--G----TCAG-ATCTGATA----A-A-TCATAA---GTAC-----AAATAGG
gi|11521 : acaacTACATCACATGATT----TGTAA--GG--TGT---GGA--GA--G----TCAG-ATCTGATA----A-A-TCATAttcggaatatcttatgaca
gi|11531 : acaaccctaattgtacttACATGATT----TGTAA--TT--TGT---GGC--AA--G----TCAG-ATCTAACA----A-A-TCATA--GAGT-----GCAAATAGGttcggaatatcttatgaca
gi|11537 : aac--TGT---GGC--GA--G----TCAG-ATCTGACA----A-A-TCATATCAT-------GCAAATAGGgagataattggaatatcttatgaca
Alignments
lowQualScore : 333333333
lowQualScore : 4 1 1 33 33 9 5555 8888 2 8 5555 2 0 8 777777777 9
lowQualScore : . . . .. .. . .... .... . . .... . . . ......... .
lowQualScore : 1 0 9 22 22 1 0000 7777 4 8 3333 5 6 3 111111111 9
consensus : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----AA-TCATGCCGTGTA----GT-AATCGGAATATCTTATGACA
Reference ( family-921 ) : AACCCTATTTACACNATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----AA-TCATATCGTGTA----GTAAATAGGAATATCTTATGACA
gi|11521 : AACCCTAATTGTACTTTATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCTTACA----AA-TCATGTGATGTA-----T---TCGGAATATCTTATGACA
gi|11522 : acAACCCTATTTGTACTATATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCT--TA----A---CATAT-GTGAT----GT--ATCGGAATATCTTATGACA
gi|11523 : acAACCCTATTTGTACT-TATGATTTATCA--GA--TCTGAC----TC-T--CCAC-A-CTTACA----AA-TCATGTGATGTA-----T---TCGGAATATCTTATGACA
gi|11524 : acAACCCTATTTGTACTATATGATTTATCA--GATCTCTGAC----TC-T--CCAC-ATCTTCCA----AA-TCATGTGATGT--------AATTGGAATATTTTATGACA
gi|11525 : acAACCTAAATTGTACTAAATGACTTAT-A--GA--TCTGAT----TC------AC-ACCTTACA----AA-TCA-AT-GTATG----GTAT-TCGGAATATCTTATGACA
gi|11526 : acAACCCTATTTCTACTTTATGAATGGTCA--GA--TCTGACTCGGTC-G--CCAC-ATCTTACA----AA-TCATGCGATGT--------AATTGGAAAATCATGTGACA
gi|11527 : acAACCCTATTT-TACTATA-GATTT-TCAACGA--TCTGAC----TCTT--CCAC-ACCGTACA----AATTCATGT
gi|11528 : acAACCCTATTTGTACAATATGATTTATCA--GA--TCTGAC----TC-A--CCAC-ATCTTACA----AA-TCATGTGATGT--------AATCGGAATATCTAATGACAgatctattttggat
gi|11529 : cAACCCTATTTGTACTATATGATTTATCA--AA--TCTGAC----TC-G--TCAC-ATCTTACA----AA-CCATGTGATGT--------AATCGGAATATCTTATCACA
gi|11530 : cAACCCTATTTGTACAATATGATTTA-CA---A--TCTGAC----TC-AGCCCACAATCTTACA---------ATATCATGTG----ATGTATCGGAATA--TTAAGACA
gi|11531 : AACCCTATTTGCACTCTATGATTTGTTA--GA--TCTGAC----TT-G--CCAC-AAATTACA----AA-TCAT---GTG-A----GATAATTGGAATATCTTATGACA
gi|11532 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----AA-TCATACCGTGTACCGGGTAAATAGGAAAATCATATGACA
gi|11533 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----AA-TCACATCGTGTA----
gi|11534 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-A--CCAC-ATCTGACA----AA-TCATACCGTGTA----
gi|11535 : AGCCCTATTTACACGATATGTTTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----AA-TCATACCGT-------GTAAATAGGAAAATC
gi|11536 : AGCCCTATTTACACGATATGATTTTTCA--CA--TCTGAC----TC-G--CCAC-ATCTGACATTTTAA-TCATACCGT-------GTAAATAGAAAAATCATAAGACA
gi|11537 : CCCTATTTGCATGATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-A
Alignments
lowQualScore : 2222222222222222
lowQualScore : 1 1 33 33 5555 8888 2 5555 2 2 2 7777777777777777
lowQualScore : . . .. .. .... .... . .... . . . ................
lowQualScore : 0 9 22 22 0000 7777 4 3333 5 5 5 6666666666666666
consensus : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCA-TGC-GTGTA----GT-AATCGGAATATCTTATGACA
Reference ( family-921 ) : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCA-TGCCGTGTA----GT-AATCGGAATATCTTATGACA
gi|11521 : AACCCTAATTGTACTTTATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCTTACA----A-A-TCA-TGTGATGTA-----T---TCGGAATATCTTATGACA
gi|11522 : acAACCCTATTTGTACTATATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCTTA-A----C-A-T-A-TGTGATGT---------ATCGGAATATCTTATGACA
gi|11523 : acAACCCTATTTGTACT-TATGATTTATCA--GA--TCTGAC----TC-T--CCAC-A-CTTACA----A-A-TCA-TGTGATGTA-----T---TCGGAATATCTTATGACA
gi|11524 : acAACCCTATTTGTACTATATGATTTATCA--GATCTCTGAC----TC-T--CCAC-ATCTTCCA----A-A-TCA-T---GTGAT----GT-AATTGGAATATTTTATGACA
gi|11525 : acAACCTAAATTGTACTAAATGACTTAT-A--GA--TCTGAT----TC------AC-ACCTTACA----A-A-TCAATG---TATG----GT-ATTCGGAATATCTTATGACA
gi|11526 : acAACCCTATTTCTACTTTATGAATGGTCA--GA--TCTGACTCGGTC-G--CCAC-ATCTTACA----A-A-TCA-TGCGAT-------GT-AATTGGAAAATCATGTGACA
gi|11527 : acAACCCTATTT-TACTATA-GATTT-TCAACGA--TCTGAC----TCTT--CCAC-ACCGTACA----A-ATTCA-TG
gi|11528 : acAACCCTATTTGTACAATATGATTTATCA--GA--TCTGAC----TC-A--CCAC-ATCTTACA----A-A-TCA-T---GTGAT----GT-AATCGGAATATCTAATGACAtgatctattttggat
gi|11529 : cAACCCTATTTGTACTATATGATTTATCA--AA--TCTGAC----TC-G--TCAC-ATCTTACA----A-A-CCA-T---GTGAT----GT-AATCGGAATATCTTATCACA
gi|11530 : cAACCCTATTTGTACAATATGATTTA-CA---A--TCTGAC----TC-AGCCCACAATCTTACA----ATA-TCA-TGTGATGT---------ATCGGAATA--TTAAGACA
gi|11531 : AACCCTATTTGCACTCTATGATTTGTTA--GA--TCTGAC----TT-G--CCAC-AAATTACA----A-A-TCA-T---GTGAG----AT-AATTGGAATATCTTATGACA
gi|11532 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCA-TACCGTGTACCGGGTAAATAGGAAAATCATATGACA
gi|11533 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCA-CATCGTGTA----
gi|11534 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-A--CCAC-ATCTGACA----A-A-TCA-TACCGTGTA----
gi|11535 : AGCCCTATTTACACGATATGTTTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCA-TACCGTGTA-------AATAGGAAAATC
gi|11536 : AGCCCTATTTACACGATATGATTTTTCA--CA--TCTGAC----TC-G--CCAC-ATCTGACATTTTA-A-TCA-TACCGTGTA-------AATAGAAAAATCATAAGACA
gi|11537 : CCCTATTTGCATGATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-A
Alignments
lowQualScore : 44444444444444444
lowQualScore : 1 1 33 33 5555 8888 2 5555 2 2 22222222222222222
lowQualScore : . . .. .. .... .... . .... . . .................
lowQualScore : 0 9 22 22 0000 7777 4 3333 5 5 77777777777777777
consensus : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCATG-CG-TGTA----G-T-AATCGGAATATCTTATGACA
Reference ( family-921 ) : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCATG-CG-TGTA----G-T-AATCGGAATATCTTATGACA
gi|11521 : AACCCTAATTGTACTTTATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCTTACA----A-A-TCATG-TGATGTA------T---TCGGAATATCTTATGACA
gi|11522 : acAACCCTATTTGTACTATATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCTTA-A----C-A-T-ATG-TGATGT----------ATCGGAATATCTTATGACA
gi|11523 : acAACCCTATTTGTACT-TATGATTTATCA--GA--TCTGAC----TC-T--CCAC-A-CTTACA----A-A-TCATG-TGATGTA------T---TCGGAATATCTTATGACA
gi|11524 : acAACCCTATTTGTACTATATGATTTATCA--GATCTCTGAC----TC-T--CCAC-ATCTTCCA----A-A-TCATG-TG--AT-----G-T-AATTGGAATATTTTATGACA
gi|11525 : acAACCTAAATTGTACTAAATGACTTAT-A--GA--TCTGAT----TC------AC-ACCTTACA----A-A-TCA-A-TG-TATG----G-T-ATTCGGAATATCTTATGACA
gi|11526 : acAACCCTATTTCTACTTTATGAATGGTCA--GA--TCTGACTCGGTC-G--CCAC-ATCTTACA----A-A-TCATG-CG--AT-----G-T-AATTGGAAAATCATGTGACA
gi|11527 : acAACCCTATTT-TACTATA-GATTT-TCAACGA--TCTGAC----TCTT--CCAC-ACCGTACA----A-ATTCATG-TG-
gi|11528 : acAACCCTATTTGTACAATATGATTTATCA--GA--TCTGAC----TC-A--CCAC-ATCTTACA----A-A-TCATG-TG--AT-----G-T-AATCGGAATATCTAATGACAatctattttggat
gi|11529 : cAACCCTATTTGTACTATATGATTTATCA--AA--TCTGAC----TC-G--TCAC-ATCTTACA----A-A-CCATG-TG--AT-----G-T-AATCGGAATATCTTATCACA
gi|11530 : cAACCCTATTTGTACAATATGATTTA-CA---A--TCTGAC----TC-AGCCCACAATCTTACA----ATA-TCATG-TGATGT----------ATCGGAATA--TTAAGACA
gi|11531 : AACCCTATTTGCACTCTATGATTTGTTA--GA--TCTGAC----TT-G--CCAC-AAATTACA----A-A-TCATG-TG----A----GAT-AATTGGAATATCTTATGACA
gi|11532 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCATACCG-TGTACCGGG-TAAATAGGAAAATCATATGACA
gi|11533 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCACATCG-TGTA----
gi|11534 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-A--CCAC-ATCTGACA----A-A-TCATACCG-TGTA----
gi|11535 : AGCCCTATTTACACGATATGTTTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCATACCG-TGTA--------AATAGGAAAATC
gi|11536 : AGCCCTATTTACACGATATGATTTTTCA--CA--TCTGAC----TC-G--CCAC-ATCTGACATTTTA-A-TCATACCG-TGTA--------AATAGAAAAATCATAAGACA
gi|11537 : CCCTATTTGCATGATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-A
Alignments
lowQualScore : 44444444444444444
lowQualScore : 1 1 33 33 5555 8888 2 5555 2 2 22222222222222222
lowQualScore : . . .. .. .... .... . .... . . .................
lowQualScore : 0 9 22 22 0000 7777 4 3333 5 5 77777777777777777
consensus : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCATG-CG-TGTA----G-T-AATCGGAATATCTTATGACA
Reference ( family-921 ) : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCATG-CG-TGTA----G-T-AATCGGAATATCTTATGACA
gi|11521 : AACCCTAATTGTACTTTATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCTTACA----A-A-TCATG-TGATGTA------T---TCGGAATATCTTATGACA
gi|11522 : acAACCCTATTTGTACTATATGATTTATCA--GA--TCTGAC----TC-T--CCAC-ACCTTA-A----C-A-T-ATG-TGATGT----------ATCGGAATATCTTATGACA
gi|11523 : acAACCCTATTTGTACT-TATGATTTATCA--GA--TCTGAC----TC-T--CCAC-A-CTTACA----A-A-TCATG-TGATGTA------T---TCGGAATATCTTATGACA
gi|11524 : acAACCCTATTTGTACTATATGATTTATCA--GATCTCTGAC----TC-T--CCAC-ATCTTCCA----A-A-TCATG-TG--AT-----G-T-AATTGGAATATTTTATGACA
gi|11525 : acAACCTAAATTGTACTAAATGACTTAT-A--GA--TCTGAT----TC------AC-ACCTTACA----A-A-TCA-A-TG-TATG----G-T-ATTCGGAATATCTTATGACA
gi|11526 : acAACCCTATTTCTACTTTATGAATGGTCA--GA--TCTGACTCGGTC-G--CCAC-ATCTTACA----A-A-TCATG-CG--AT-----G-T-AATTGGAAAATCATGTGACA
gi|11527 : acAACCCTATTT-TACTATA-GATTT-TCAACGA--TCTGAC----TCTT--CCAC-ACCGTACA----A-ATTCATG-TG-
gi|11528 : acAACCCTATTTGTACAATATGATTTATCA--GA--TCTGAC----TC-A--CCAC-ATCTTACA----A-A-TCATG-TG--AT-----G-T-AATCGGAATATCTAATGACAatctattttggat
gi|11529 : cAACCCTATTTGTACTATATGATTTATCA--AA--TCTGAC----TC-G--TCAC-ATCTTACA----A-A-CCATG-TG--AT-----G-T-AATCGGAATATCTTATCACA
gi|11530 : cAACCCTATTTGTACAATATGATTTA-CA---A--TCTGAC----TC-AGCCCACAATCTTACA----ATA-TCATG-TGATGT----------ATCGGAATA--TTAAGACA
gi|11531 : AACCCTATTTGCACTCTATGATTTGTTA--GA--TCTGAC----TT-G--CCAC-AAATTACA----A-A-TCATG-TG----A----GAT-AATTGGAATATCTTATGACA
gi|11532 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCATACCG-TGTACCGGG-TAAATAGGAAAATCATATGACA
gi|11533 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCACATCG-TGTA----
gi|11534 : AGCCCTATTTACACGATATGATTTGTCA--GA--TGTGAC----TC-A--CCAC-ATCTGACA----A-A-TCATACCG-TGTA----
gi|11535 : AGCCCTATTTACACGATATGTTTTGTCA--GA--TGTGAC----TC-G--CCAC-ATCTGACA----A-A-TCATACCG-TGTA--------AATAGGAAAATC
gi|11536 : AGCCCTATTTACACGATATGATTTTTCA--CA--TCTGAC----TC-G--CCAC-ATCTGACATTTTA-A-TCATACCG-TGTA--------AATAGAAAAATCATAAGACA
gi|11537 : CCCTATTTGCATGATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-A
blockSeqs : T A AC TC TCGG AGC A TTTT T T CCGTGTACCGGGTAA
blockSeqs : T A . . . TT . . . . TGTATGGTA
blockSeqs : T A . . . T . . . . TGATGTAT
blockSeqs : T A . . . T . . . . CCGTGTAA
blockSeqs : T G . . . T . . . . CCGTGTAA
blockSeqs : T A . . . G . . . . TGATGTA
blockSeqs : A A . . . A . . . . CGATGTA
blockSeqs : T A . . . G . . . . TGATGTA
blockSeqs : A G . . . G . . . . TGATGTA
blockSeqs : T G . . . G . . . . TGAGATA
blockSeqs : G G . . . G . . . . TGATGT
blockSeqs : G G . . . A . . . . TGATGT
blockSeqs : G G . . . G . . . .
blockSeqs : G T . . . G . . . .
blockSeqs : G G . . . G . . . .
blockSeqs : G . . . . . .
blockSeqCons : CGATGTA**********
originalCons : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCATG-CG-TGTA----G-T-AATCGGAATATCTTATGACA
finalCons : AACCCTATTTGTACNATATGATTTGTCA--GA--TCTGAC----TC-G--CCAC-ATCTTACA----A-A-TCATGCGATGTA----------ATCGGAATATCTTATGACA
Alignments
lowQualScore : 111111 11111111
lowQualScore : 1 1 33 33 333333 2 5555 2 2 2 0 2 55555555
lowQualScore : . . .. .. ...... . .... . . . . . ........
lowQualScore : 0 9 22 22 777777 4 3333 5 5 5 7 7 00000000
consensus : AACCCTATTTGTACNATATGATTTGTCA--GATCT--GACTC-G----CCAC-ATCTTACA----A-A-TCA-TGCGATG-T--------AATCGGAATATCTTATGACA
Reference ( family-921 ) : AACCCTATTTGTACNATATGATTTGTCA--GATCT--GACTC-G----CCAC-ATCTTACA----A-A-TCA-TGCGATG-T--------AATCGGAATATCTTATGACA
gi|11521 : AACCCTAATTGTACTTTATGATTTATCA--GATCT--GACTC-T----CCAC-ACCTTACA----A-A-TCA-TGTGATG-T--------ATTCGGAATATCTTATGACA
gi|11522 : acAACCCTATTTGTACTATATGATTTATCA--GATCT--GACTC-T----CCAC-ACCTTA-A----C-A-T-A-TGTGATG-T---------ATCGGAATATCTTATGACA
gi|11523 : acAACCCTATTTGTACT-TATGATTTATCA--GATCT--GACTC-T----CCAC-A-CTTACA----A-A-TCA-TGTGATG-T--------ATTCGGAATATCTTATGACA
gi|11524 : acAACCCTATTTGTACTATATGATTTATCA--GATCTCTGACTC-T----CCAC-ATCTTCCA----A-A-TCA-TGTGATG-T--------AATTGGAATATTTTATGACA
gi|11525 : acAACCTAAATTGTACTAAATGACTTAT-A--GATCT--GATTC--------AC-ACCTTACA----A-A-TCAATGT-ATGGT--------ATTCGGAATATCTTATGACA
gi|11526 : acAACCCTATTTCTACTTTATGAATGGTCA--GATCT--GACTC-GGTCGCCAC-ATCTTACA----A-A-TCA-TGCGATG-T--------AATTGGAAAATCATGTGACA
gi|11527 : acAACCCTATTT-TACTATA-GATTT-TCAACGATCT--GACTCTT----CCAC-ACCGTACA----A-ATTCA-TGTGATC-T--------
gi|11528 : acAACCCTATTTGTACAATATGATTTATCA--GATCT--GACTC-A----CCAC-ATCTTACA----A-A-TCA-TGTGATG-T--------AATCGGAATATCTAATGACAttttggat
gi|11529 : cAACCCTATTTGTACTATATGATTTATCA--AATCT--GACTC-G----TCAC-ATCTTACA----A-A-CCA-TGTGATG-T--------AATCGGAATATCTTATCACA
gi|11530 : cAACCCTATTTGTACAATATGATTTA-CA---ATCT--GACTC-AGC--CCACAATCTTACA----ATA-TCA-TGTGATG-T---------ATCGGAATA--TTAAGACA
gi|11531 : AACCCTATTTGCACTCTATGATTTGTTA--GATCT--GACTT-G----CCAC-AAATTACA----A-A-TCA-TGTGAGA-T--------AATTGGAATATCTTATGACA
gi|11532 : AGCCCTATTTACACGATATGATTTGTCA--GATGT--GACTC-G----CCAC-ATCTGACA----A-A-TCA-TACCGTG-TACCGGGTAAATAGGAAAATCATATGACA
gi|11533 : AGCCCTATTTACACGATATGATTTGTCA--GATGT--GACTC-G----CCAC-ATCTGACA----A-A-TCA-
gi|11534 : AGCCCTATTTACACGATATGATTTGTCA--GATGT--GACTC-A----CCAC-ATCTGACA----A-A-TCA-TACCGTG-T--------catcgtgta
gi|11535 : AGCCCTATTTACACGATATGTTTTGTCA--GATGT--GACTC-G----CCAC-ATCTGACA----A-A-TCA-TACCGTG-TA-------AATAGGAAAATC
gi|11536 : AGCCCTATTTACACGATATGATTTTTCA--CATCT--GACTC-G----CCAC-ATCTGACATTTTA-A-TCA-TACCGTG-TA-------AATAGAAAAATCATAAGACA
gi|11537 : CCCTATTTGCATGATATGATTTGTCA--GATCT--GACTC-G----CCAC-A