lowQualScore : 111 333333 11111
lowQualScore : 2 2 000 2 2 999 2 33 2 444 33 2 2 2 55 2 2 33 666 33 2 444 2 2 2 2 2 2 4 4 2 2 2 33 2 2 2 9999 5 2 2 888888 2 5 555 999999 555 2 55555 2 33 2 3 6 555 3 44 3 6 3 3 3
lowQualScore : . . ... . . ... . .. . ... .. . . . .. . . .. ... .. . ... . . . . . . . . . . . .. . . . .... . . . ...... . . ... ...... ... . ..... . .. . . . ... . .. . . . . .
lowQualScore : 5 5 333 5 5 444 5 44 5 111 22 4 4 4 66 4 4 22 555 22 4 888 4 4 4 4 4 4 7 7 4 5 5 44 5 5 5 3333 3 9 9 222222 9 7 000 666666 000 1 66666 9 99 9 1 2 444 3 66 3 7 3 3 3
consensus : ATAGCAGAGA-A-CT---T-G-TC---A-C--A-CGAA---A--GA-GGCA-CATGT-A--AT-ATGG-CAAAA--A---A--GT-C--GGTTT-A-T-C-T-CATTT-C-TTTTTA-T-ACAG-A-G--A-AT-AC-ACTGA----G-AT-ATAAT-A------A-TG-C---TGG----TT---TTNTTTA----TT-GAA--C-TTTAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
Reference ( gi|121959 ) : ATAGCAGAGA-A-CT---T-G-TC---A-C--A-CGAA---A--GA-GGCA-CATGT-A--AT-ATGG-CAAAA--A---A--GT-C--AGTTT-A-T-C-T-CATTT-C-TTTTTA-T-ACAG-A-G--A-AT-AC-ACTGA----G-AT-ATAAT-A------A-TG-C---TGG--TTTT---TTTTTTT----TT-GAA--C-TTTAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
gi|121960 : ATAGCAGAGA-A-CT---T-G-TC---A-C--A-CGAA---A--GA-GGCA-AATGT-A--AT-ATGG-CAAAA--A---A--GT-C--AGTTT-A-T-C-T-CATTT-C-TTTTTA-T-ACAG-A-G--A-AT-AC-ACTGA----G-AT-ATAAT-A------A-TG-C---TGG--GTTT---TTTCTTA----TT-GAA--C-TTTAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121957 : ATAGCAGAGA-A-CT---T-G-TC---A-C--A-CGAA---A--GA-GGCA-CATGT-C--AT-ATGG-CAAAA--A---A--GT-C--GGTTT-A-T-C-T-CAGTT-C-TTTTTA-T-ACAG-A-G--A-AT-AC-ACTGA----G-AT-ATAAT-A------A-TG-C---TG------T---TTATTTA----TT-GAA--C-TTTAG-T-T---ATTC-GTA--T-C-CG-AAA-A-AACAA
gi|121962 : ATAGCAGAGA-A-CT---T-G-TC---A-C--A-CGAA---A--GA-GGCA-CATGT-A--AT-ATGG-C-AAA--A---A--GT-C--GGTTC-A-T-C-T-CATTT-C-TTTTTA-T-ACAG-A-G--ACAT-ACAACTGA----T-AT-AT-AT-A------A-TG-C---TGG--GTTT---TTTTTAA----TT-GAA--C-TTTAG-T-T---ATTC-GTG--T-C-CG-AATAA-AACAA
gi|121961 : ATAGCAGAGA-A-CT---T-G-TCC--A-C--A-CGAA---A--GA-GGCA-CATGT-A--AT-ATGG-CAAAA--G------GT-C--GGTTT-A-T-C-T-TATTA-T-TTTTTA-T-A-AG-A-G--A-AT-AC-ACTGA----G-AT-ATAAT-A------A-TGGC---TG------T---TTATTTA----TT-GAA--C-TCTAG-T-T---ATTT-GTG--T-C-CG-AAT-A-AACAA
gi|121965 : ATAACAGAGA-A-GT---T-G-TTCCAA-C--A-CGAA---A--GG-GGCA-CATGT-A---T-ATGG-CAAAA--AT--A--GT-TCAAGTTT-A-T-C-T-CATTT-CTTTTTTA-T-ACAGAA-G--A-AT-AC-ACTGA----GAAT-ATAAT-A------A-TGCC---TGGGATTTT---TTTTTTT----CTGGAA--C-TTTAG-TCT---ATTCGGTG--T-CATG-AAT-A-AA
gi|121963 : ATAGCAGAAA-A-CT---T-A-TC---A-C--A-CGAC---A--GA-GGTA-CATGT-A--ATAATGG-AAAAA--AAATA--GT-C--GGCTT-A-T-CGT-CATTT-C-TTTTTA-T-ATAG-G-G--A-AT-AC-ACTAA----G-----------------A-TG-C---TG------T---TCATTTA----TT-GAA--C-TTTAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121964 : ATAGCAGAGA-A-CT---T-G-TCC--A-C--A-TGAA---A--GG-GGCA-CATGT-A--AT-ATGG----AA--A---A--G-----GGTTT-A-T-C-T-TATTTAT-TTTTTATT-ACAG-ACG--A-AT-AC-ACTGA----G-ATCCTAAT-A------ATTG-C---TG-----TT---TATTTTA----TT-GAA--C-TTTAA-T-T---ATTC-GTG--T---CG-AAT-A-AACAA
gi|121958 : ATAGCAGAGA-AGCT---T-G-TC---A-C--AACGAA---A--GA-GGCAGCATGT-GC-AT-ATGG-CAAAA--A---A--GT-C--GGTTT-ACT-C-T-CAGTT-C-TTTTTT-A-ACAG-A-G--A-AT-AC-ACTGA----GAAT-ATAATAA------A-TG-C---TG------T---TTATTTA----TT-GAAACT-TTTAG-T-T---ATTC-GTAATT-C-CGAAAA-A-AACAA
gi|121966 : ATATCAGAGA-A-CT---T-G-TC---A-C--A-CGAA---C--GA-GGCA-CACGT-A--AT-ATGG-CAAAA--T---A---T-C--GAGTT-A-T-C-C-CATTT-C-TTTTTA-T-ACAG-A-G--A-AT-AC-ACTGA----G-A
gi|121967 : ATAACAGAGA-A-CT---T-G-TC---A-C--A-CAAA---A--GA-GGTG-CATG--------------------A---A--GT-C--GGTTT-A-T-C-T-CATTT-C-TTTTTA-T-
gi|121968 : TAGCAGAGA-A-CT---TCG-TC---A-CTAA-CGAA---A--GAAGGCA-CATGT-A--AT-ATTG-CAAAA--A---A--GT----AGTTTAA-T-C-T-CATTT-C-TTTTTATT-ACAG-G-G--A-AT-AC-ACTGA----G-A--ATAAT-A------A-TG-CTGTTGG--TTTT---TTTTTTA----TT-GAA--C-TT
gi|121969 : TAGGAGAGAGA-CT---T-A-GC---A----A-TGAACTTACCGA-G--A-CATGT-A--AT--TAG-CAAAA--A---G--GTAC--GGTTT---T-C-T-TATTT-CATTATTA-A-ACAG-T-ATTA-AT-AT-A-GGAGT--G-TT-ATTAT-ACTTGAGA-TA-C---CTG--TATTGTGTCTTGTT----AT-G-A--C-TTTAG-T-TATCATTT-GTG--T-A-CG-AAT-A-AACAA
gi|121970 : AGCAGAGA-A-CTAACT-GGTC---A-C--A-CGAA---A--GA-GGCA-CATGT-A--AT-ATGG-CAAAA--A---AAAGT-T--GTTTT-A-T-C-T-CATTT-C-TTTTTA-T-ACAG-A-G--A-AT-AC-ACTGA----G-AT-ATAAT-A------T-TG-C---TG------T---TTATTTA----TT-GAA--C-TTTAG-T-T---ATTC-GTG--TCC-CG-AAT-A-AAC
gi|121971 : AGAAA-A-CTC--T-G-TC---A-C--A-CGAA------GA-GGCA-CATG--A--AT-ATGGACAAAAAAA---A--GT-C--AG-TT-A-TCC-T-CA-TT-C-TTTATA-TAACAG-A-G--A-ATAAC-ACTAA----A-AT-A-AAT-A------A-T--C---TGG--TTTT---TTTTATTAAACTT-GAA--C-TGTAG-T-T---A
gi|121972 : GAGA-A-CT---T-G-TC---AAC--A-CGAA---A--GA-GGCA-CATGTAA--AT-ATGG-C-AAA--A---A--GT-C--GGTTT-A-T-C-T-TATTT-A-TTTTTA---ATAG-A-G--A-AT-AC-ACTGA----G-AT-ATAAT--------A-TG-C---CG----------TTTATTA----TT-GAA--C-TTTAGTT-T---ATTT-GTG--T-CGCG-AAT-A-AAC
gi|121973 : GA-A-CTCC-T-G-TC---A-C----CGAA---A--GA-CGCA-CATGT-ACCAT-ATGG-CAAAA--A---A---T-C--GGTTT-A-T-C-GATATTA-A-TTTGTA-T-ATAG-A-G--A-AC-AC-ACTGATCACT-AT-ATA---A------A-TG-C---TG-----CT---TTATTAT----CT-GAA--CATTTAG-TCT---ATTT-GTG--T-C-CG-AAC-AGAACAA
gi|121974 : AA---A--GA-GGCA-CATGT-A--AT-ATGG-CAAAA--A---A--AT-C--AGCTT-A-T-C-T-CATTT-C-TTTTTA-T-ACAG-A-G--A-AT-AC-A
Alignments
lowQualScore : 111 111111111 333333333
lowQualScore : 2 2 999 2 2 2 666 2 33 2 333 33 2 2 2 55 2 2 2 000 2 33 2 4 2 2 4 4 2 111111111 2 2 7777777 2 2 2 5555 5 2 2 2 2 5 111111111 22 2 2 444 33 2 777777 2 5 555 3 44 3 6 3 3 3
lowQualScore : . . ... . . . ... . .. . ... .. . . . .. . . . ... . .. . . . . . . . ......... . . ....... . . . .... . . . . . . ......... .. . . ... .. . ...... . . ... . .. . . . . .
lowQualScore : 4 4 777 4 4 4 555 4 22 4 999 11 2 2 2 33 2 2 2 000 2 11 2 4 2 2 4 4 4 888888888 4 4 6666666 4 4 5 3333 0 7 7 7 7 3 999999999 88 7 7 777 77 7 777777 9 7 000 1 22 1 2 1 1 1
consensus : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
Reference ( family-920 ) : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
gi|121957 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-C--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CAGTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G-------TTTATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTA--T-C-CG-AAA-A-AACAA
gi|121958 : ATAGCAGAGA-AGCT---T-G-T-C---A-C--AACGAA---A--GA-GGCAGCATGT-GC-ATA-TGG-CAAAAA-A---GT-C--GGTTTACTC-T-CAGTT-C-TTTTTT-AA-CAG---------A-GA-A-------T-AC-AC-TGA----GAAT-ATA-ATAAA-TG-CT-G-------TTTATTT-AT-T---GAAACT-TT------TAG-T-T---ATTC-GTAATT-C-CGAAAA-A-AACAA
gi|121959 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--AGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--GTT-TTTTTTTT-TT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
gi|121960 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-AATGT-A--ATA-TGG-CAAAAA-A---GT-C--AGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--GGT-TTTTTCTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121961 : ATAGCAGAGA-A-CT---T-G-T-CC--A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAG-----GT-C--GGTTTA-TC-T-TATTA-T-TTTTTA-TA--AG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TGGCT-G-------TTTATTT-AT-T---GAA--C-TC------TAG-T-T---ATTT-GTG--T-C-CG-AAT-A-AACAA
gi|121962 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-C-AAAA-A---GT-C--GGTTCA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GACA-------T-ACAAC-TGA----T-AT-AT--AT-AA-TG-CTGG--G---TTTTTTTTAAT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AATAA-AACAA
gi|121963 : ATAGCAGAAA-A-CT---T-A-T-C---A-C--A-CGAC---A--GA-GGTA-CATGT-A--ATAATGG-AAAAAA-AATAGT-C--GGCTTA-TCGT-CATTT-C-TTTTTA-TA-TAG---------G-GA-A-------T-AC-AC-TAA----G-AT------------G-CT-G-------TTCATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121964 : ATAGCAGAGA-A-CT---T-G-TCC---A-C--A-TGAA---A--GG-GGCA-CATGT-A--ATA-TGG----AAA-A---G-----GGTTTA-TC-T-TATTTAT-TTTTTATTA-CAG---------ACGA-A-------T-AC-AC-TGA----G-ATCCTA-AT-AATTG-CT----G---TTTATTTT-AT-T---GAA--C-TT------TAA-T-T---ATTC-GTG--T---CG-AAT-A-AACAA
gi|121965 : ATAACAGAGA-A-GT---T-G-T-TCCAA-C--A-CGAA---A--GG-GGCA-CATGT-A---TA-TGG-CAAAAATA---GT-TCAAGTTTA-TC-T-CATTT-CTTTTTTA-TA-CAGA--------A-GA-A-------T-AC-AC-TGA----GAAT-ATA-AT-AA-TGCCT-G--GGA-TTTTTTTT-TT-TCTGGAA--C-TT------TAG-TCT---ATTCGGTG--T-CATG-AAT-A-AA
gi|121966 : ATATCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---C--GA-GGCA-CACGT-A--ATA-TGG-CAAAAT-A----T-C--GAGTTA-TC-C-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-A
gi|121967 : ATAACAGAGA-A-CT---T-G-T-C---A-C--A-CAAA---A--GA-GGTG-CATG------------------A-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-T
gi|121968 : TAGCAGAGA-A-CT---TCG-T-C---A-CTAA-CGAA---A--GAAGGCA-CATGT-A--ATA-TTG-CAAAAA-A---GT-A--GTTTAA-TC-T-CATTT-C-TTTTTATTA-CAG---------G-GA-A-------T-AC-AC-TGA----G-A--ATA-AT-AA-TG-CT-GTTGGTTTTTTTTTT-AT-T---GAA--C-TT------
gi|121969 : TAGGAGAGAGA-CT---T-A-G-C---A----A-TGAACTTACCGA-G--A-CATGT-A--AT--TAG-CAAAAA-G---GTAC--GGTTT--TC-T-TATTT-CATTATTA-AA-CAGTATTAATATA-GG-AGTGTTATT-AT-ACTTGA----G-AT-ACCTGT-AT-TG-T-----G---TCTTG-TT-AT------GA--C-TT------TAG-T-TATCATTT-GTG--T-A-CG-AAT-A-AACAA
gi|121970 : AGCAGAGA-A-CTAACT-GGT-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-AAA-GT-T--GTTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AT-TG-CT-G-------TTTATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--TCC-CG-AAT-A-AAC
gi|121971 : AGAAA-A-CTC--T-G-T-C---A-C--A-CGAA------GA-GGCA-CATG--A--ATA-TGGACAAAAA-AAA-GT-C--AGTT-A-TCCT-CATT--C-TTTATA-TAACAG---------A-GA-A-------TAAC-AC-TAA----A-AT-A-A-AT-AA-T--CT-G--G---TTTTTTTT-AT-T---AAA--C-TTGAACTGTAG-T-T---A
gi|121972 : GAGA-A-CT---T-G-T-C---AAC--A-CGAA---A--GA-GGCA-CATGTAA--ATA-TGG-C-AAAA-A---GT-C--GGTTTA-TC-T-TATTT-A-TTTTTA--A-TAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT--A-TG-CC-G-------TTTA-TT-AT-T---GAA--C-TT------TAGTT-T---ATTT-GTG--T-CGCG-AAT-A-AAC
gi|121973 : GA-A-CTCC-T-G-T-C---A-C----CGAA---A--GA-CGCA-CATGT-ACCATA-TGG-CAAAAA-A----T-C--GGTTTA-TC-GATATTA-A-TTTGTA-TA-TAG---------A-GA-A-------C-AC-AC-TGATCACT-AT-ATA----AA-TG-CT----G---CTTTA-TT-ATCT---GAA--CATT------TAG-TCT---ATTT-GTG--T-C-CG-AAC-AGAACAA
gi|121974 : AA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---AT-C--AGCTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-A
Alignments
lowQualScore : 111 111111111 333333333
lowQualScore : 2 2 999 2 2 2 666 2 33 2 333 33 2 2 2 55 2 2 2 000 2 33 2 4 2 2 4 4 2 111111111 2 2 7777777 2 2 2 5555 5 2 2 2 2 5 111111111 22 2 2 444 33 2 777777 2 5 555 3 44 3 6 3 3 3
lowQualScore : . . ... . . . ... . .. . ... .. . . . .. . . . ... . .. . . . . . . . ......... . . ....... . . . .... . . . . . . ......... .. . . ... .. . ...... . . ... . .. . . . . .
lowQualScore : 4 4 777 4 4 4 555 4 22 4 999 11 2 2 2 33 2 2 2 000 2 11 2 4 2 2 4 4 4 888888888 4 4 6666666 4 4 5 3333 0 7 7 7 7 3 999999999 88 7 7 777 77 7 777777 9 7 000 1 22 1 2 1 1 1
consensus : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
Reference ( family-920 ) : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
gi|121957 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-C--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CAGTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G-------TTTATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTA--T-C-CG-AAA-A-AACAA
gi|121958 : ATAGCAGAGA-AGCT---T-G-T-C---A-C--AACGAA---A--GA-GGCAGCATGT-GC-ATA-TGG-CAAAAA-A---GT-C--GGTTTACTC-T-CAGTT-C-TTTTTT-AA-CAG---------A-GA-A-------T-AC-AC-TGA----GAAT-ATA-ATAAA-TG-CT-G-------TTTATTT-AT-T---GAAACT-TT------TAG-T-T---ATTC-GTAATT-C-CGAAAA-A-AACAA
gi|121959 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--AGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--GTT-TTTTTTTT-TT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
gi|121960 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-AATGT-A--ATA-TGG-CAAAAA-A---GT-C--AGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--GGT-TTTTTCTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121961 : ATAGCAGAGA-A-CT---T-G-T-CC--A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAG-----GT-C--GGTTTA-TC-T-TATTA-T-TTTTTA-TA--AG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TGGCT-G-------TTTATTT-AT-T---GAA--C-TC------TAG-T-T---ATTT-GTG--T-C-CG-AAT-A-AACAA
gi|121962 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-C-AAAA-A---GT-C--GGTTCA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GACA-------T-ACAAC-TGA----T-AT-AT--AT-AA-TG-CTGG--G---TTTTTTTTAAT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AATAA-AACAA
gi|121963 : ATAGCAGAAA-A-CT---T-A-T-C---A-C--A-CGAC---A--GA-GGTA-CATGT-A--ATAATGG-AAAAAA-AATAGT-C--GGCTTA-TCGT-CATTT-C-TTTTTA-TA-TAG---------G-GA-A-------T-AC-AC-TAA----G-AT------------G-CT-G-------TTCATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121964 : ATAGCAGAGA-A-CT---T-G-TCC---A-C--A-TGAA---A--GG-GGCA-CATGT-A--ATA-TGG----AAA-A---G-----GGTTTA-TC-T-TATTTAT-TTTTTATTA-CAG---------ACGA-A-------T-AC-AC-TGA----G-ATCCTA-AT-AATTG-CT----G---TTTATTTT-AT-T---GAA--C-TT------TAA-T-T---ATTC-GTG--T---CG-AAT-A-AACAA
gi|121965 : ATAACAGAGA-A-GT---T-G-T-TCCAA-C--A-CGAA---A--GG-GGCA-CATGT-A---TA-TGG-CAAAAATA---GT-TCAAGTTTA-TC-T-CATTT-CTTTTTTA-TA-CAGA--------A-GA-A-------T-AC-AC-TGA----GAAT-ATA-AT-AA-TGCCT-G--GGA-TTTTTTTT-TT-TCTGGAA--C-TT------TAG-TCT---ATTCGGTG--T-CATG-AAT-A-AA
gi|121966 : ATATCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---C--GA-GGCA-CACGT-A--ATA-TGG-CAAAAT-A----T-C--GAGTTA-TC-C-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-A
gi|121967 : ATAACAGAGA-A-CT---T-G-T-C---A-C--A-CAAA---A--GA-GGTG-CATG------------------A-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-T
gi|121968 : TAGCAGAGA-A-CT---TCG-T-C---A-CTAA-CGAA---A--GAAGGCA-CATGT-A--ATA-TTG-CAAAAA-A---GT-A--GTTTAA-TC-T-CATTT-C-TTTTTATTA-CAG---------G-GA-A-------T-AC-AC-TGA----G-A--ATA-AT-AA-TG-CT-GTTGGTTTTTTTTTT-AT-T---GAA--C-TT------
gi|121969 : TAGGAGAGAGA-CT---T-A-G-C---A----A-TGAACTTACCGA-G--A-CATGT-A--AT--TAG-CAAAAA-G---GTAC--GGTTT--TC-T-TATTT-CATTATTA-AA-CAGTATTAATATA-GG-AGTGTTATT-AT-ACTTGA----G-AT-ACCTGT-AT-TG-T-----G---TCTTG-TT-AT------GA--C-TT------TAG-T-TATCATTT-GTG--T-A-CG-AAT-A-AACAA
gi|121970 : AGCAGAGA-A-CTAACT-GGT-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-AAA-GT-T--GTTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AT-TG-CT-G-------TTTATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--TCC-CG-AAT-A-AAC
gi|121971 : AGAAA-A-CTC--T-G-T-C---A-C--A-CGAA------GA-GGCA-CATG--A--ATA-TGGACAAAAA-AAA-GT-C--AGTT-A-TCCT-CATT--C-TTTATA-TAACAG---------A-GA-A-------TAAC-AC-TAA----A-AT-A-A-AT-AA-T--CT-G--G---TTTTTTTT-AT-T---AAA--C-TTGAACTGTAG-T-T---A
gi|121972 : GAGA-A-CT---T-G-T-C---AAC--A-CGAA---A--GA-GGCA-CATGTAA--ATA-TGG-C-AAAA-A---GT-C--GGTTTA-TC-T-TATTT-A-TTTTTA--A-TAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT--A-TG-CC-G-------TTTA-TT-AT-T---GAA--C-TT------TAGTT-T---ATTT-GTG--T-CGCG-AAT-A-AAC
gi|121973 : GA-A-CTCC-T-G-T-C---A-C----CGAA---A--GA-CGCA-CATGT-ACCATA-TGG-CAAAAA-A----T-C--GGTTTA-TC-GATATTA-A-TTTGTA-TA-TAG---------A-GA-A-------C-AC-AC-TGATCACT-AT-ATA----AA-TG-CT----G---CTTTA-TT-ATCT---GAA--CATT------TAG-TCT---ATTT-GTG--T-C-CG-AAC-AGAACAA
gi|121974 : AA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---AT-C--AGCTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-A
blockSeqs : G G AAC C G C CCA A TA A CTT CC A G A CC A A T ATA A CA C G A A T T A TATTAATAT C C GTGTTAT A A T TCAC A C T A T G GTTGGTTT AT A C CTG AC A GAACTG T C ATC G AT C A A A G
blockSeqs : . . CC . . . C . . . . . . . . C . . . AA . . . C . . A T . A . . . . . . . A . . . . C GGTTT TT . . . . . . . C . . . . G . . .
blockSeqs : . . C . . . . . . . . . . . . . . . . AA . . . . . . . . . . . . . . . . . . . . . . . GGGTT TC . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGGAT AT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGGT TT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GGT AT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GT TT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GT TT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GC TT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G AT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G TT . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G G . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . G A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
finalCons : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
Alignments
lowQualScore : 111 111111111 333333333
lowQualScore : 2 2 999 2 2 2 666 2 33 2 333 33 2 2 2 55 2 2 2 000 2 33 2 4 2 2 4 4 2 111111111 2 2 7777777 2 2 2 5555 5 2 2 2 2 5 111111111 22 2 2 444 33 2 777777 2 5 555 3 44 3 6 3 3 3
lowQualScore : . . ... . . . ... . .. . ... .. . . . .. . . . ... . .. . . . . . . . ......... . . ....... . . . .... . . . . . . ......... .. . . ... .. . ...... . . ... . .. . . . . .
lowQualScore : 4 4 777 4 4 4 555 4 22 4 999 11 2 2 2 33 2 2 2 000 2 11 2 4 2 2 4 4 4 888888888 4 4 6666666 4 4 5 3333 0 7 7 7 7 3 999999999 88 7 7 777 77 7 777777 9 7 000 1 22 1 2 1 1 1
consensus : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
Reference ( family-920 ) : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--G---TTTTNTTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
gi|121957 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-C--ATA-TGG-CAAAAA-A---GT-C--GGTTTA-TC-T-CAGTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G-------TTTATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTA--T-C-CG-AAA-A-AACAA
gi|121958 : ATAGCAGAGA-AGCT---T-G-T-C---A-C--AACGAA---A--GA-GGCAGCATGT-GC-ATA-TGG-CAAAAA-A---GT-C--GGTTTACTC-T-CAGTT-C-TTTTTT-AA-CAG---------A-GA-A-------T-AC-AC-TGA----GAAT-ATA-ATAAA-TG-CT-G-------TTTATTT-AT-T---GAAACT-TT------TAG-T-T---ATTC-GTAATT-C-CGAAAA-A-AACAA
gi|121959 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---GT-C--AGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--GTT-TTTTTTTT-TT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACAA
gi|121960 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-AATGT-A--ATA-TGG-CAAAAA-A---GT-C--AGTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TG-CT-G--GGT-TTTTTCTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121961 : ATAGCAGAGA-A-CT---T-G-T-CC--A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAG-----GT-C--GGTTTA-TC-T-TATTA-T-TTTTTA-TA--AG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AA-TGGCT-G-------TTTATTT-AT-T---GAA--C-TC------TAG-T-T---ATTT-GTG--T-C-CG-AAT-A-AACAA
gi|121962 : ATAGCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-C-AAAA-A---GT-C--GGTTCA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GACA-------T-ACAAC-TGA----T-AT-AT--AT-AA-TG-CTGG--G---TTTTTTTTAAT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AATAA-AACAA
gi|121963 : ATAGCAGAAA-A-CT---T-A-T-C---A-C--A-CGAC---A--GA-GGTA-CATGT-A--ATAATGG-AAAAAA-AATAGT-C--GGCTTA-TCGT-CATTT-C-TTTTTA-TA-TAG---------G-GA-A-------T-AC-AC-TAA----G-AT------------G-CT-G-------TTCATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--T-C-CG-AAT-A-AACA
gi|121964 : ATAGCAGAGA-A-CT---T-G-TCC---A-C--A-TGAA---A--GG-GGCA-CATGT-A--ATA-TGG----AAA-A---G-----GGTTTA-TC-T-TATTTAT-TTTTTATTA-CAG---------ACGA-A-------T-AC-AC-TGA----G-ATCCTA-AT-AATTG-CT----G---TTTATTTT-AT-T---GAA--C-TT------TAA-T-T---ATTC-GTG--T---CG-AAT-A-AACAA
gi|121965 : ATAACAGAGA-A-GT---T-G-T-TCCAA-C--A-CGAA---A--GG-GGCA-CATGT-A---TA-TGG-CAAAAATA---GT-TCAAGTTTA-TC-T-CATTT-CTTTTTTA-TA-CAGA--------A-GA-A-------T-AC-AC-TGA----GAAT-ATA-AT-AA-TGCCT-G--GGA-TTTTTTTT-TT-TCTGGAA--C-TT------TAG-TCT---ATTCGGTG--T-CATG-AAT-A-AA
gi|121966 : ATATCAGAGA-A-CT---T-G-T-C---A-C--A-CGAA---C--GA-GGCA-CACGT-A--ATA-TGG-CAAAAT-A----T-C--GAGTTA-TC-C-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-A
gi|121967 : ATAACAGAGA-A-CT---T-G-T-C---A-C--A-CAAA---A--GA-GGTG-CATG------------------A-A---GT-C--GGTTTA-TC-T-CATTT-C-TTTTTA-T
gi|121968 : TAGCAGAGA-A-CT---TCG-T-C---A-CTAA-CGAA---A--GAAGGCA-CATGT-A--ATA-TTG-CAAAAA-A---GT-A--GTTTAA-TC-T-CATTT-C-TTTTTATTA-CAG---------G-GA-A-------T-AC-AC-TGA----G-A--ATA-AT-AA-TG-CT-GTTGGTTTTTTTTTT-AT-T---GAA--C-TT------
gi|121969 : TAGGAGAGAGA-CT---T-A-G-C---A----A-TGAACTTACCGA-G--A-CATGT-A--AT--TAG-CAAAAA-G---GTAC--GGTTT--TC-T-TATTT-CATTATTA-AA-CAGTATTAATATA-GG-AGTGTTATT-AT-ACTTGA----G-AT-ACCTGT-AT-TG-T-----G---TCTTG-TT-AT------GA--C-TT------TAG-T-TATCATTT-GTG--T-A-CG-AAT-A-AACAA
gi|121970 : AGCAGAGA-A-CTAACT-GGT-C---A-C--A-CGAA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-AAA-GT-T--GTTTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT-AT-TG-CT-G-------TTTATTT-AT-T---GAA--C-TT------TAG-T-T---ATTC-GTG--TCC-CG-AAT-A-AAC
gi|121971 : AGAAA-A-CTC--T-G-T-C---A-C--A-CGAA------GA-GGCA-CATG--A--ATA-TGGACAAAAA-AAA-GT-C--AGTT-A-TCCT-CATT--C-TTTATA-TAACAG---------A-GA-A-------TAAC-AC-TAA----A-AT-A-A-AT-AA-T--CT-G--G---TTTTTTTT-AT-T---AAA--C-TTGAACTGTAG-T-T---A
gi|121972 : GAGA-A-CT---T-G-T-C---AAC--A-CGAA---A--GA-GGCA-CATGTAA--ATA-TGG-C-AAAA-A---GT-C--GGTTTA-TC-T-TATTT-A-TTTTTA--A-TAG---------A-GA-A-------T-AC-AC-TGA----G-AT-ATA-AT--A-TG-CC-G-------TTTA-TT-AT-T---GAA--C-TT------TAGTT-T---ATTT-GTG--T-CGCG-AAT-A-AAC
gi|121973 : GA-A-CTCC-T-G-T-C---A-C----CGAA---A--GA-CGCA-CATGT-ACCATA-TGG-CAAAAA-A----T-C--GGTTTA-TC-GATATTA-A-TTTGTA-TA-TAG---------A-GA-A-------C-AC-AC-TGATCACT-AT-ATA----AA-TG-CT----G---CTTTA-TT-ATCT---GAA--CATT------TAG-TCT---ATTT-GTG--T-C-CG-AAC-AGAACAA
gi|121974 : AA---A--GA-GGCA-CATGT-A--ATA-TGG-CAAAAA-A---AT-C--AGCTTA-TC-T-CATTT-C-TTTTTA-TA-CAG---------A-GA-A-------T-AC-A