lowQualScore : 22 1
lowQualScore : 3 2 5 333 00 2 2 2 7777 2 2 2 66 0 33 66 1
lowQualScore : . . . ... .. . . . .... . . . .. . .. .. .
lowQualScore : 6 7 3 111 66 4 4 4 4444 4 4 4 11 1 44 11 4
consensus : TAATTATCTTTCGT-C-GCT-A-ATTT-C-C-TTCAAG-TTCTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
Reference ( gi|104181 ) : TAATTATCTTTTGT-C-GCT-A-ATT--C-C-TTCAAG-TTCTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104183 : TAATTATCTTTTGT-C-GCT-A-ATT--C-C-TTCAAG-TTCTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAA
gi|104182 : TAATTATCTTTTGT-C-GCT-A-ATT--C-C-TTCAAG-TTCTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATT-AATAAAA
gi|104184 : TAATTAT-TTTTGT-C-GCT-A-ATT--C-C-TTCAAG-TTCTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104186 : TAATTATCTTTCGT-CCGCT-A-ATTT-C-C-TTCAAG-TTCTGGTTTG----GATTA-T-AAAAATT-ATT--AATTAAA-AAA
gi|104185 : TAATTATTTTTCGT-C-GCT-G-ATTT-C-C-TTCAAG-TTCTGGTTTG----G-TTA-T-AAAAAA----------CAAATAAAA
gi|104187 : TAATTATCTTTCGT-CCGCT-A-ATTTCC-C-TTCAAG-TTCTGGTT-G----G-TTA-T-AAAAATT-ATA--AATAAAAa
gi|104188 : TAATTATCTTTCGTTC-GCT-A-ATTTTC-C-TTCAAG-TTCTGGTTT-----G-TTA-T-AAAAAaa
gi|104189 : TAATTATCTTTCGT-C-GCT-AGGTT--C-CTTTCAAG-TTCTGGTTTGAAATA-TTA---AAAAAATAATG--AATTAAA-AAAA
gi|104190 : TAATTAATGTTCGT-C-GCT-G-ATTT-C-C-TTCAAC-TTCTAGTTTG----G-TAA-T-AAAAATT-A-A--AAT--AATAAAA
gi|104191 : AATTATTTTTCGT-C-GCT-G-ATTT-C-C-TTCTAG-TTCTGGTTTG----G-TCA-T--AAAAAC-ATA--AAaa
gi|104192 : AATTATTTTTGGC-C-GTT-T-ATTT-C-C-TGCAAG-TTCTGATTTG----C-TTA-C-AAAAAA--ATAACAAT--AATAAA
gi|104193 : ATTATCTCTCGT-C-GCT-A-TTT--C-C-TTCAAGTTTCTGGTTTG----G-TTA-T--AAAAAT-ATA--A--TAAA-AAA
gi|104194 : ATTGTTTTTCGT-C-GCC-G-ATT--TGC-TTCAAG-TTCTGGTTTG----G-TTA-T-ATAAAATAATA--A--TAAA-AAAA
gi|104196 : TATCTTTCGT-C-GCTTA-ATT--T-C-TTCAAG-TTCTGG-TTG----G-TTA-TAAAAAAAT-ATG--AATTTAAAAAAA
gi|104195 : TATTTTTCGT-C-GCT-G-ATTT-C-C-TTAAAG-TTCTGATTTG----G-TTA-T---AAAAT-A-A--AAT--AACAAAA
gi|104197 : TT--C-C-TTCAAG-TTCTGGTTTG----G-TTA-T-AAAAAAT-ATG--AATTAAA-AAAAa
gi|104198 : atTT--C-C-TTCAAG-TTCTAGTTTGC---G-TTATT-AAAAAA----A--AAGAAAATAAAA
Alignments
lowQualScore : 1
lowQualScore : 2 5 2 66 2 2 6666 2 2 2 55 33 44 0
lowQualScore : . . . .. . . .... . . . .. .. .. .
lowQualScore : 5 0 5 33 2 2 9999 2 2 2 22 22 66 1
consensus : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
Reference ( family-917 ) : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104181 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104182 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATT-AATAAAA
gi|104183 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAA
gi|104184 : TAATTATTTTT-GT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104185 : TAATTATTTTTCGT-C-GC-TGATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAA----------CAAATAAAA
gi|104186 : TAATTATCTTTCGT-CCGC-TAATTT-CC-TTCAAGTT-CTGGTTTG----GATTA-T-AAAAATT-ATT--AATTAAA-AAAa
gi|104187 : TAATTATCTTTCGT-CCGC-TAATTTCCC-TTCAAGTT-CTGG-TTG----G-TTA-T-AAAAATT-ATA--AATAAAA
gi|104188 : TAATTATCTTTCGTTC-GC-TAATTTTCC-TTCAAGTT-CTGGTTT-----G-TTA-T-AAAAAaa
gi|104189 : TAATTATCTTTCGT-C-GC-TAGGTT-CCTTTCAAGTT-CTGGTTTGAAATA-TTA---AAAAAATAATG--AATTAAA-AAAA
gi|104190 : TAATTAATGTTCGT-C-GC-TGATTT-CC-TTCAACTT-CTAGTTTG----G-TAA-T-AAAAATT-A-A--AAT--AATAAAA
gi|104191 : AATTATTTTTCGT-C-GC-TGATTT-CC-TTCTAGTT-CTGGTTTG----G-TCA-T--AAAAAC-ATA--AAaa
gi|104192 : AATTATTTTTGGC-C-GT-TTATTT-CC-TGCAAGTT-CTGATTTG----C-TTA-C-AAAAAA--ATAACAAT--AATAAA
gi|104193 : ATTATCTCTCGT-C-GC-TA-TTT-CC-TTCAAGTTTCTGGTTTG----G-TTA-T--AAAAAT-ATA--A--TAAA-AAA
gi|104194 : ATTGTTTTTCGT-C-GC-CGATTT-GC-TTCAAGTT-CTGGTTTG----G-TTA-T-ATAAAATAATA--A--TAAA-AAAA
gi|104195 : TATTTTTCGT-C-GC-TGATTT-CC-TTAAAGTT-CTGATTTG----G-TTA-T---AAAAT-A-A--AAT--AACAAAA
gi|104196 : TATCTTTCGT-C-GCTTAATTT--C-TTCAAGTT-CTGG-TTG----G-TTA-TAAAAAAAT-ATG--AATTTAAAAAAAa
gi|104197 : ATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATG--AATTAAA-AAAA
gi|104198 : ATTT-CC-TTCAAGTT-CTAGTTTGC---G-TTATT-AAAAAA----A--AAGAAAATAAAA
Alignments
lowQualScore : 1
lowQualScore : 2 5 2 66 2 2 6666 2 2 2 55 33 44 0
lowQualScore : . . . .. . . .... . . . .. .. .. .
lowQualScore : 5 0 5 33 2 2 9999 2 2 2 22 22 66 1
consensus : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
Reference ( family-917 ) : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104181 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104182 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATT-AATAAAA
gi|104183 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAA
gi|104184 : TAATTATTTTT-GT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104185 : TAATTATTTTTCGT-C-GC-TGATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAA----------CAAATAAAA
gi|104186 : TAATTATCTTTCGT-CCGC-TAATTT-CC-TTCAAGTT-CTGGTTTG----GATTA-T-AAAAATT-ATT--AATTAAA-AAAa
gi|104187 : TAATTATCTTTCGT-CCGC-TAATTTCCC-TTCAAGTT-CTGG-TTG----G-TTA-T-AAAAATT-ATA--AATAAAA
gi|104188 : TAATTATCTTTCGTTC-GC-TAATTTTCC-TTCAAGTT-CTGGTTT-----G-TTA-T-AAAAAaa
gi|104189 : TAATTATCTTTCGT-C-GC-TAGGTT-CCTTTCAAGTT-CTGGTTTGAAATA-TTA---AAAAAATAATG--AATTAAA-AAAA
gi|104190 : TAATTAATGTTCGT-C-GC-TGATTT-CC-TTCAACTT-CTAGTTTG----G-TAA-T-AAAAATT-A-A--AAT--AATAAAA
gi|104191 : AATTATTTTTCGT-C-GC-TGATTT-CC-TTCTAGTT-CTGGTTTG----G-TCA-T--AAAAAC-ATA--AAaa
gi|104192 : AATTATTTTTGGC-C-GT-TTATTT-CC-TGCAAGTT-CTGATTTG----C-TTA-C-AAAAAA--ATAACAAT--AATAAA
gi|104193 : ATTATCTCTCGT-C-GC-TA-TTT-CC-TTCAAGTTTCTGGTTTG----G-TTA-T--AAAAAT-ATA--A--TAAA-AAA
gi|104194 : ATTGTTTTTCGT-C-GC-CGATTT-GC-TTCAAGTT-CTGGTTTG----G-TTA-T-ATAAAATAATA--A--TAAA-AAAA
gi|104195 : TATTTTTCGT-C-GC-TGATTT-CC-TTAAAGTT-CTGATTTG----G-TTA-T---AAAAT-A-A--AAT--AACAAAA
gi|104196 : TATCTTTCGT-C-GCTTAATTT--C-TTCAAGTT-CTGG-TTG----G-TTA-TAAAAAAAT-ATG--AATTTAAAAAAAa
gi|104197 : ATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATG--AATTAAA-AAAA
gi|104198 : ATTT-CC-TTCAAGTT-CTAGTTTGC---G-TTATT-AAAAAA----A--AAGAAAATAAAA
blockSeqs : T C T TC T T AAAT A T A TA AC TA T
blockSeqs : . C . TT . . C . . . TA . TA T
blockSeqs : . . . T . . . . . . T . CA T
blockSeqs : . . . T . . . . . . T . TA T
blockSeqs : . . . T . . . . . . T . AA T
blockSeqs : . . . T . . . . . . T . TA T
blockSeqs : . . . T . . . . . . T . TA C
blockSeqs : . . . T . . . . . . T . TA A
blockSeqs : . . . T . . . . . . C . TT T
blockSeqs : . . . T . . . . . . T . TA .
blockSeqs : . . . T . . . . . . T . AA .
blockSeqs : . . . T . . . . . . T . T .
blockSeqs : . . . T . . . . . . T . . .
blockSeqs : . . . T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : T*
originalCons : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
finalCons : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
Alignments
lowQualScore : 1
lowQualScore : 2 5 2 66 2 2 6666 2 2 2 55 33 44 0
lowQualScore : . . . .. . . .... . . . .. .. .. .
lowQualScore : 5 0 5 33 2 2 9999 2 2 2 22 22 66 1
consensus : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
Reference ( family-917 ) : TAATTATCTTTCGT-C-GC-TAATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104181 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104182 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATT-AATAAAA
gi|104183 : TAATTATCTTTTGT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAA
gi|104184 : TAATTATTTTT-GT-C-GC-TAATT--CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATA--AATTAAATAAAA
gi|104185 : TAATTATTTTTCGT-C-GC-TGATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAA----------CAAATAAAA
gi|104186 : TAATTATCTTTCGT-CCGC-TAATTT-CC-TTCAAGTT-CTGGTTTG----GATTA-T-AAAAATT-ATT--AATTAAA-AAAa
gi|104187 : TAATTATCTTTCGT-CCGC-TAATTTCCC-TTCAAGTT-CTGG-TTG----G-TTA-T-AAAAATT-ATA--AATAAAA
gi|104188 : TAATTATCTTTCGTTC-GC-TAATTTTCC-TTCAAGTT-CTGGTTT-----G-TTA-T-AAAAAaa
gi|104189 : TAATTATCTTTCGT-C-GC-TAGGTT-CCTTTCAAGTT-CTGGTTTGAAATA-TTA---AAAAAATAATG--AATTAAA-AAAA
gi|104190 : TAATTAATGTTCGT-C-GC-TGATTT-CC-TTCAACTT-CTAGTTTG----G-TAA-T-AAAAATT-A-A--AAT--AATAAAA
gi|104191 : AATTATTTTTCGT-C-GC-TGATTT-CC-TTCTAGTT-CTGGTTTG----G-TCA-T--AAAAAC-ATA--AAaa
gi|104192 : AATTATTTTTGGC-C-GT-TTATTT-CC-TGCAAGTT-CTGATTTG----C-TTA-C-AAAAAA--ATAACAAT--AATAAA
gi|104193 : ATTATCTCTCGT-C-GC-TA-TTT-CC-TTCAAGTTTCTGGTTTG----G-TTA-T--AAAAAT-ATA--A--TAAA-AAA
gi|104194 : ATTGTTTTTCGT-C-GC-CGATTT-GC-TTCAAGTT-CTGGTTTG----G-TTA-T-ATAAAATAATA--A--TAAA-AAAA
gi|104195 : TATTTTTCGT-C-GC-TGATTT-CC-TTAAAGTT-CTGATTTG----G-TTA-T---AAAAT-A-A--AAT--AACAAAA
gi|104196 : TATCTTTCGT-C-GCTTAATTT--C-TTCAAGTT-CTGG-TTG----G-TTA-TAAAAAAAT-ATG--AATTTAAAAAAAa
gi|104197 : ATTT-CC-TTCAAGTT-CTGGTTTG----G-TTA-T-AAAAAAT-ATG--AATTAAA-AAAA
gi|104198 : ATTT-CC-TTCAAGTT-CTAGTTTGC---G-TTATT-AAAAAA----A--AAGAAAATAAAA