lowQualScore : 1111
lowQualScore : 3 3 3 3 33 5555 2 2 8888888 0 2222 33 2 2 5 2 2 2 5 2 2 2 2
lowQualScore : . . . . .. .... . . ....... . .... .. . . . . . . . . . . .
lowQualScore : 3 1 1 1 77 7777 7 7 7777777 4 9999 22 4 4 0 5 5 5 0 5 5 5 5
consensus : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
Reference ( gi|129365 ) : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTCACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129364 : TTTT-GTTG-TC-AA-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129368 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-------C--ACG-TGG-CATTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129370 : TTTT-TTTG-TCCGG-CG--A----GT-GAA-A--------GTGATCGG-GCTTGGC--ACC-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129369 : TTTTAGTTG-TC-GGGCG--A----GT-GAA-AT-------CTGAT-GG-GC-TGGC--ACGTTGG-CGTTACT-CGATTTTA-C-CGCAATTCCT-A-CAA-TGTGTA
gi|129367 : TTCT-CTTG-TT-GG-CG--A----GT-GAA-GT-------CTGAT-AG-GT-TGGC--ATG-TGG-TGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129371 : TTTT-CTTG-TC-GG-CG--A----TT-GAA-AT-------CTGATC----C---GC--ACG-TGG-TGTTACT-CGA-TTTA-C-CAC-ATTCCT-A-CAA-TGTGTA
gi|129372 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------C-GATC-------GGC--ACG-TGG-CGTTACT-CGA-TTTAGC-CAC-ATTCCT-A--AA-TGTGTA
gi|129373 : TTTT-GTTG-TC-GG-CA--G----GT-GAA-AT-------CTGATCGG-GC-T-GC--ACG-TGG-CTTTACT-CGA--TTA-C-TGC-ATTCCT-A-CAT-TG
gi|129366 : TTTT-GTTGGTC-GG-CG--ACAGGGT-GAA-ATGGTTCTACTGATCGGTGC-TGGC--ACG-TG--CGTCACT-CGA-TTTA-CTCGC-ATTCCT-A-C-A-TGTGT
gi|129374 : TTTT-G--G-TC-GG-CG--A----GTTGAACAT-------CTGATCGG-GC-TGGCAAACG-TTG-TGTTACT-CGA-TTTA-CGCGC-ATTCTT-AGCAA-TGTG
gi|129375 : TTTT-GTTG-TC-GG-CGCGA----GT-GAA-AT-------CTGATCGG-CC-TGCA--ACG-TAG-TGTTACTCCGA-ATTA-C-GGC-ATT-CT-G-CGA-TGTG
gi|129376 : TTCT-GTTG-TA-GG-CG--A----GT-GAA-GT-------TTGATC-G-GT-TGGC--ACG-TGG-
gi|129377 : TTG-TT-TG-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGGTCGTTACT-CGA-TTAT-C-CGC-ATTCCTAA-CAA-TGTG
gi|129379 : --A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CTTTACT-CGA-TTTA-C-TGC-ATTCCT-A-CAT-TG
gi|129378 : --A----GT-GAA-GT-------CTGATAGG-TT-TGGC--ACA-TGT-GGTTACT-CGA-TTTA-C-CGC-ATT-CT-A-CAA-TGTGT
gi|129380 : GATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-T-AGC-ATTTCT-A-CAA-TGTGTA
gi|129381 : GC--TCG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAATTGTGTA
Alignments
lowQualScore : 1111
lowQualScore : 3 2 2 2 33 5555 2 2 8888888 2222 33 2 2 2 2 2 4 2 2 2 2
lowQualScore : . . . . .. .... . . ....... .... .. . . . . . . . . . .
lowQualScore : 1 9 9 9 44 3333 5 5 1111111 4444 11 2 2 4 4 4 7 4 4 4 4
consensus : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
Reference ( family-915 ) : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129364 : TTTT-GTTG-TC-AA-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129365 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTCACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129366 : TTTT-GTTGGTC-GG-CG--ACAGGGT-GAA-ATGGTTCTACTGATCGGTGC-TGGC--ACG-TG--CGTCACT-CGA-TTTA-CTCGC-ATTCCT-A-C-A-TGTGT
gi|129367 : TTCT-CTTG-TT-GG-CG--A----GT-GAA-GT-------CTGAT-AG-GT-TGGC--ATG-TGG-TGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129368 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-------C--ACG-TGG-CATTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129369 : TTTTAGTTG-TC-GGGCG--A----GT-GAA-AT-------CTGAT-GG-GC-TGGC--ACGTTGG-CGTTACT-CGATTTTA-C-CGCAATTCCT-A-CAA-TGTGTA
gi|129370 : TTTT-TTTG-TCCGG-CG--A----GT-GAA-A--------GTGATCGG-GCTTGGC--ACC-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129371 : TTTT-CTTG-TC-GG-CG--A----TT-GAA-AT-------CTGATC----C---GC--ACG-TGG-TGTTACT-CGA-TTTA-C-CAC-ATTCCT-A-CAA-TGTGTA
gi|129372 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------C-GATCGG-------C--ACG-TGG-CGTTACT-CGA-TTTAGC-CAC-ATTCCT-A--AA-TGTGTA
gi|129373 : TTTT-GTTG-TC-GG-CA--G----GT-GAA-AT-------CTGATCGG-GC-T-GC--ACG-TGG-CTTTACT-CGA--TTA-C-TGC-ATTCCT-A-CAT-TG
gi|129374 : TTTT-G--G-TC-GG-CG--A----GTTGAACAT-------CTGATCGG-GC-TGGCAAACG-TTG-TGTTACT-CGA-TTTA-CGCGC-ATTCTT-AGCAA-TGTG
gi|129375 : TTTT-GTTG-TC-GG-CGCGA----GT-GAA-AT-------CTGATCGG-CC-TGCA--ACG-TAG-TGTTACTCCGA-ATTA-C-GGC-ATT-CT-G-CGA-TGTG
gi|129376 : TTCT-GTTG-TA-GG-CG--A----GT-GAA-GT-------TTGATC-G-GT-TGGC--ACG-TGG-
gi|129377 : TTG-TT-TG-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGGTCGTTACT-CGA-TTAT-C-CGC-ATTCCTAA-CAA-TGTG
gi|129378 : --A----GT-GAA-GT-------CTGATAGG-TT-TGGC--ACA-TGT-GGTTACT-CGA-TTTA-C-CGC-ATT-CT-A-CAA-TGTGT
gi|129379 : --A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CTTTACT-CGA-TTTA-C-TGC-ATTCCT-A-CAT-TG
gi|129380 : GATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-T-AGC-ATTTCT-A-CAA-TGTGTA
gi|129381 : GC--TCG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAATTGTGTA
Alignments
lowQualScore : 1111
lowQualScore : 3 2 2 2 33 5555 2 2 8888888 2222 33 2 2 2 2 2 4 2 2 2 2
lowQualScore : . . . . .. .... . . ....... .... .. . . . . . . . . . .
lowQualScore : 1 9 9 9 44 3333 5 5 1111111 4444 11 2 2 4 4 4 7 4 4 4 4
consensus : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
Reference ( family-915 ) : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129364 : TTTT-GTTG-TC-AA-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129365 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTCACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129366 : TTTT-GTTGGTC-GG-CG--ACAGGGT-GAA-ATGGTTCTACTGATCGGTGC-TGGC--ACG-TG--CGTCACT-CGA-TTTA-CTCGC-ATTCCT-A-C-A-TGTGT
gi|129367 : TTCT-CTTG-TT-GG-CG--A----GT-GAA-GT-------CTGAT-AG-GT-TGGC--ATG-TGG-TGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129368 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-------C--ACG-TGG-CATTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129369 : TTTTAGTTG-TC-GGGCG--A----GT-GAA-AT-------CTGAT-GG-GC-TGGC--ACGTTGG-CGTTACT-CGATTTTA-C-CGCAATTCCT-A-CAA-TGTGTA
gi|129370 : TTTT-TTTG-TCCGG-CG--A----GT-GAA-A--------GTGATCGG-GCTTGGC--ACC-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129371 : TTTT-CTTG-TC-GG-CG--A----TT-GAA-AT-------CTGATC----C---GC--ACG-TGG-TGTTACT-CGA-TTTA-C-CAC-ATTCCT-A-CAA-TGTGTA
gi|129372 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------C-GATCGG-------C--ACG-TGG-CGTTACT-CGA-TTTAGC-CAC-ATTCCT-A--AA-TGTGTA
gi|129373 : TTTT-GTTG-TC-GG-CA--G----GT-GAA-AT-------CTGATCGG-GC-T-GC--ACG-TGG-CTTTACT-CGA--TTA-C-TGC-ATTCCT-A-CAT-TG
gi|129374 : TTTT-G--G-TC-GG-CG--A----GTTGAACAT-------CTGATCGG-GC-TGGCAAACG-TTG-TGTTACT-CGA-TTTA-CGCGC-ATTCTT-AGCAA-TGTG
gi|129375 : TTTT-GTTG-TC-GG-CGCGA----GT-GAA-AT-------CTGATCGG-CC-TGCA--ACG-TAG-TGTTACTCCGA-ATTA-C-GGC-ATT-CT-G-CGA-TGTG
gi|129376 : TTCT-GTTG-TA-GG-CG--A----GT-GAA-GT-------TTGATC-G-GT-TGGC--ACG-TGG-
gi|129377 : TTG-TT-TG-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGGTCGTTACT-CGA-TTAT-C-CGC-ATTCCTAA-CAA-TGTG
gi|129378 : --A----GT-GAA-GT-------CTGATAGG-TT-TGGC--ACA-TGT-GGTTACT-CGA-TTTA-C-CGC-ATT-CT-A-CAA-TGTGT
gi|129379 : --A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CTTTACT-CGA-TTTA-C-TGC-ATTCCT-A-CAT-TG
gi|129380 : GATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-T-AGC-ATTTCT-A-CAA-TGTGTA
gi|129381 : GC--TCG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAATTGTGTA
blockSeqs : A G C G CG CAGG T C GGTTCTA TGC AA T T C T G T A A G T
blockSeqs : . . . . . . . . . GCT . . . . . . G . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . .
blockSeqs : . . . . . . . . . GT . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . .
blockSeqs : . . . . . . . . . CC . . . . . . . . . . .
blockSeqs : . . . . . . . . . GT . . . . . . . . . . .
blockSeqs : . . . . . . . . . TT . . . . . . . . . . .
blockSeqs : . . . . . . . . . GC . . . . . . . . . . .
blockSeqs : . . . . . . . . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . .
blockSeqCons : GC**
originalCons : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
finalCons : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGGGC--TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
Alignments
lowQualScore : 1111
lowQualScore : 3 2 2 2 33 5555 2 2 8888888 2222 33 2 2 2 2 2 4 2 2 2 2
lowQualScore : . . . . .. .... . . ....... .... .. . . . . . . . . . .
lowQualScore : 1 9 9 9 44 3333 5 5 1111111 4444 11 2 2 4 4 4 7 4 4 4 4
consensus : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
Reference ( family-915 ) : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129364 : TTTT-GTTG-TC-AA-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129365 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CGTCACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129366 : TTTT-GTTGGTC-GG-CG--ACAGGGT-GAA-ATGGTTCTACTGATCGGTGC-TGGC--ACG-TG--CGTCACT-CGA-TTTA-CTCGC-ATTCCT-A-C-A-TGTGT
gi|129367 : TTCT-CTTG-TT-GG-CG--A----GT-GAA-GT-------CTGAT-AG-GT-TGGC--ATG-TGG-TGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129368 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------CTGATCGG-------C--ACG-TGG-CATTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129369 : TTTTAGTTG-TC-GGGCG--A----GT-GAA-AT-------CTGAT-GG-GC-TGGC--ACGTTGG-CGTTACT-CGATTTTA-C-CGCAATTCCT-A-CAA-TGTGTA
gi|129370 : TTTT-TTTG-TCCGG-CG--A----GT-GAA-A--------GTGATCGG-GCTTGGC--ACC-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAA-TGTGTA
gi|129371 : TTTT-CTTG-TC-GG-CG--A----TT-GAA-AT-------CTGATC----C---GC--ACG-TGG-TGTTACT-CGA-TTTA-C-CAC-ATTCCT-A-CAA-TGTGTA
gi|129372 : TTTT-GTTG-TC-GG-CG--A----GT-GAA-AT-------C-GATCGG-------C--ACG-TGG-CGTTACT-CGA-TTTAGC-CAC-ATTCCT-A--AA-TGTGTA
gi|129373 : TTTT-GTTG-TC-GG-CA--G----GT-GAA-AT-------CTGATCGG-GC-T-GC--ACG-TGG-CTTTACT-CGA--TTA-C-TGC-ATTCCT-A-CAT-TG
gi|129374 : TTTT-G--G-TC-GG-CG--A----GTTGAACAT-------CTGATCGG-GC-TGGCAAACG-TTG-TGTTACT-CGA-TTTA-CGCGC-ATTCTT-AGCAA-TGTG
gi|129375 : TTTT-GTTG-TC-GG-CGCGA----GT-GAA-AT-------CTGATCGG-CC-TGCA--ACG-TAG-TGTTACTCCGA-ATTA-C-GGC-ATT-CT-G-CGA-TGTG
gi|129376 : TTCT-GTTG-TA-GG-CG--A----GT-GAA-GT-------TTGATC-G-GT-TGGC--ACG-TGG-
gi|129377 : TTG-TT-TG-CG--A----GT-GAA-GT-------CTGATCGG--T-TGGC--ACG-TGGTCGTTACT-CGA-TTAT-C-CGC-ATTCCTAA-CAA-TGTG
gi|129378 : --A----GT-GAA-GT-------CTGATAGG-TT-TGGC--ACA-TGT-GGTTACT-CGA-TTTA-C-CGC-ATT-CT-A-CAA-TGTGT
gi|129379 : --A----GT-GAA-AT-------CTGATCGG-GC-TGGC--ACG-TGG-CTTTACT-CGA-TTTA-C-TGC-ATTCCT-A-CAT-TG
gi|129380 : GATCGG--T-TGGC--ACG-TGG-CGTTACT-CGA-TTTA-T-AGC-ATTTCT-A-CAA-TGTGTA
gi|129381 : GC--TCG-TGG-CGTTACT-CGA-TTTA-C-CGC-ATTCCT-A-CAATTGTGTA