lowQualScore : 1 111111 1111 1111 111 333333333333 1 111 1111111 111 2222222222222222222 2222222222
lowQualScore : 2 1 8 4 4 777 1 5 444444 0000 5 4444 4 7 7 333 4 111111111111 55 2 4 000 1111111 999 3 999 4 555 666 3 3 55 555 44 3333333333333333333 0000000000 3 3 55 9 55 3 3 3 55 8 0 0 2 4 4 4 4 4 4 6
lowQualScore : . . . . . ... . . ...... .... . .... . . . ... . ............ .. . . ... ....... ... . ... . ... ... . . .. ... .. ................... .......... . . .. . .. . . . .. . . . . . . . . . . .
lowQualScore : 5 4 2 4 0 000 9 0 000000 6666 0 9999 4 3 3 888 4 000000000000 55 0 0 000 8888888 333 6 444 0 888 444 6 6 00 888 00 1111111111111111111 7777777777 3 3 66 1 00 6 6 6 00 2 7 7 6 0 0 0 0 0 0 0
consensus : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT--TAA-ATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGAC--AGGT-CACTG--CTTTC-AAA--NCTTGGGAG---TATTG-GGCTTCCTCA-AGATC--T---AAGGAAC------------A-CA--GGTAAG-TA-TGGG-CCGTAATTG-T-TATC-AAAACAC--CT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
Reference ( gi|28640 ) : CAAATTATTATTTAATGCATTTCATTTCTGGTTGCTTGTAACTTGATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT--TTA-ATTG-CATTGTTTGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGAT--AGGT-CACTG--TTTTC-AAA--TCTTGGGAG---TATTG-GGCTTTCTCA-AGATC--T---AAGAAAT------------A-CA--GGTAAG-TA-TGCG-CTGTAATTG-T-TATC-AAAATAC--CT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTACTGTTA
gi|28642 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---ATAGAAGGG-GG---AAAA----TGCTGT-AT--TAA-AATGTCGTTGTTT-GGGGGA-C-AGTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGAC--ATGT-CACTG--TTTTC-AAA--ACTTAAGAA---TACTG-TGCTTTCTCA-AGATC--T---AAGGAAC------------A-CA--GGTAAG-TA-------TGTAATTG-T-TATC-AGAACAC--CT-AT-CGA--GGGGTACCTAAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28641 : CAAAGTATTATTCAATACATTTCATTTCTGGTTGTTTGTAACTTCATTATTC-ATAATACGTGTATA-T---AGAGAAGGG-G------AA----TGCTGT-AT--TAA-ATTG-CATTGTTCGGGGT-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTAGAC--AGGT-CTCTG--CTTTC-ATC--ACTTGGGAG---TATTG-GGCTTTCTCA-AGATC--T---AAGGGAC------------A-CT--GGTAAG-TA-TGGG-CCGTAATAT-T-TATA-AAAACAC--CT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGCTA
gi|28643 : CAAATCATTATTTAATGTATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACAAGTATA-T---AGAAAAGGG-GA---G-AA----TGTTGT-AT--TAA-ATTA-CATTGTTT-GGGGGA-C-ATTT------T-----TGGA--T-A-TGACAAAAT---AGCAG-------TTGTGGAC--TGGT-CACTG--CTTTC-TAA--ACTTGGAGG---TATTG-GACTTCCTTA-AGATC--T---A---------------------A--GGTAAG-TA-TGGG-CCATAATTG-T-TATC-AAAACAC--CT-AA-C-A--GGGGTGAATGAGGAAAATGGTGACTGC-T-AG-TGTCA-ATCCA-ACTCA-GATATATTGTTA
gi|28644 : CAAATTATTATCTAATGCATTTCATTTGGGGTTGATT-----TTAATGATTT-AAAAAACATGTATA-T---AGAGAAGGG-GG---GGGGGGGGTGCTGT-AT--AAA-ATTG-CATTGTTCAGGGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGAC--AGAT-CACTG--CTTTC-TAA--ACTTGGGAG---TATTG-GGCCTTCTCA-AGATC--T---AAGGAAC------------A-CG--GGTAA--------------AAGTG-T-TATC-AAAACAC--TT-AT-C-A--GAAGTACCCGAGGACCATAGTCTCTGC-A-AGTTGTCA-ATCCA-CCCAA-GATCTATTGTT
gi|28646 : CAAATTATTATTTAATGCATTTCATTTCAGGTTGATTGTAACTTAATTATTCAATAATACGTGTATA-T---
gi|28645 : CAAATTATTGTTTGATGTATTTCCCTTCTGGTTG--TGTAATCTAATAATTT-ATAATACATGTATG-T---AGACAAG
gi|28647 : AATTATTATTTAATGCATTTTATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATTTATA-T----GCAAAAGG-GG---GAAA----TGCTGT-AA--TAA-ATTG-CATTGTTCGGTGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGAC--AGGT-CACTG--CTTTC-TAA--ACTTGGGAG---TATTG-GGCTTTCGCA-AGATC--T---AAAGAAC------------A-CA--GGTAAG-TA-TGGA-CCGTAATTG-T-TATT-AAAACAC--CA-AT-G-A--GGGGTATCTGAGGACCATGGCTTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28648 : TTATTGTTTTATGCTTTTCATTTCTGATTGTGTGTAA---------TC-ATAATACATGTATA-TTGTATATAAAAATAA---AAAA----TG-TGC-ATAATTACATTG-CATTGT
gi|28649 : TTAT---ATGATATATGTGCAAT---AGACAAGGA-AA---AAAA----TGCTATTAA--TAA-ATTGGCATTGTTTTTGGGGA-C-TTTT------TAAAGATGAA--TTA-TGAGAAAATT--GGCAA-------TTGTGGAC--AGTT-CTCTG--GTTCC-AAAACTCT---GAA---TATTGCGGCTTCCTC--AGATA--TTAAAAGAATT------------A-T---TGTTAT-TATTGAC-TTGTAA-TG-CATATA-AAAA-ACAACT-TT-C-A--GGTGTAGCTGCAAACTACAGTCTATAT-AGAT-TGTCA-ACCCA-C--AACGATCCATTGTTacatgtttg
gi|28650 : TGTATA-T---AGAGAAGGG-GGAGGGGAA----TGCTGT-AT--TAA-ATTG-CATTGTTTGGG
gi|28652 : -ATTG-CATTGTTCAGGGAAC-CTATTTCAAAATT-----TGAA--TTA-TGAGAAAAT---AGTAA-------TTGTGGAT--ACAT-CAatatgagaa
gi|28653 : taatagTTA-CATTGTTCAGGGGAAGC-TTTTACAAT-T-----TGAA--TCA-TAAGAAAAT---TGCAA-------TTGTGGAC--ATGC-CAATG--CCTTC-AAA--GCGTTGGAG---TATTG-AGCTTCCTCG-AGATC--T---AAAGAAG------------A-CA--CGTAAT-TT-TGGG-CTTGAATTA-T-T
gi|28651 : G-CATTGTTCGGAGGG-----TTTCTTA--T-----TTAA--T-AATTAGAAAAT---AAC----------CGTTGATTCAGGT-CAATG--CTTTCTAAA--TTCTGGAA----TCCTG-GGCGTCCTCA-AGATC--T---A-------------------------------T--TG-G-TTTTAAGTG-C-TTTT-AAAACAC--AT-TT-C-T--GGGGTAACTGCAGATCACAGTGTCTTC-A-GA-TGCCA-ATCCA-CCTGA-GATATATTGTTA
gi|28654 : ataaaaagggtatgctaataaaca------T-----TGGAATT-A-TGAGAAAAT---TGCCA-------TTGTGGAC--AGGT-TAATG--CCTTC-AAA--GCTTTGAAG---TATTG-AACTTCCTCA-CGGTC--T---AATGAAC------------A-TA--GGTAAT-TG-TGGG-CTTTAATTG-G-TATC-AAAACAA--CT-AT-T-T--AGGGTAGCTGAATATCATGGTCTCTGT-A-AG-TTTCA-ATCTA-CCTGA-GATCTATTGTTA
gi|28655 : GAGCAAATCCAAGCAAGAATTGGTTG-GGAA--AAGTACACTGGCTTTGC-AAA--CAGTAGGAGACTCATTG-G---TTCGTATAGATCGTC---AAGAGATTTTTGTAGATACA-CAATGTTAAGATC-TGAGGCCGTAATTGGT-TATCGAAAACAC--CT-AT-C-A---GGGTG-CTGAGAA--ATA---TCTGC-A-A----TCA---CTA-CATGA-GA-CTA
gi|28656 : CTTGGGAG---TATTG-GGCTTTCACA-AGATC--T---AAAGAAC------------A-CA--CGTA----A-TGGG-ATGTAATTG-T-TATC-AAAACAC--CT-ATGA-A--GGGGTAt
gi|28657 : ttaaca---AAGAAAC------------AACA--GGTAAA-TA-TGGA-CCGTAATTG-T-TTT---AAACAT--CTGAC-C-AATGGGGTATCT-AGGACCATGGCTTCTACAA-AG-TGTCAGATCCAGCCTGA-GATCTATTGTTA
Alignments
lowQualScore : 111 222222222222 1 1111111 111111111111
lowQualScore : 3 0 4 3 666 0 4 8888 8888 3 6666 6 1 000 4 777777777777 55 0 3 999 0000000 44 3 3 3 1 3 555 3 44 44 555555555555 3 3 77 77 3 44 3 3 777 3 3 3 44 1 3 3 3 3 3 3
lowQualScore : . . . . ... . . .... .... . .... . . ... . ............ .. . . ... ....... .. . . . . . ... . .. .. ............ . . .. .. . .. . . ... . . . .. . . . . . . .
lowQualScore : 9 1 0 6 444 7 4 7777 5555 6 8888 7 2 555 0 444444444444 00 9 6 222 8888888 66 3 6 3 0 1 888 3 66 22 333333333333 1 1 33 88 1 33 1 1 777 3 3 3 66 0 6 6 6 6 6 6
consensus : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTT-CAAAACTTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
Reference ( family-912 ) : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTT-CAAANCTTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28640 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGCTTGTAACTTGATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TTAATTG-CATTGTTTGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--TAGGT-CACTG-TTTT-CAAATCTTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------AA-ATA-CA--GGTAAG-TATG-CGC-TGTAATTG-T-TAT-C-AAAATACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTACTGTTA
gi|28641 : CAAAGTATTATTCAATACATTTCATTTCTGGTTGTTTGTAACTTCATTATTC-ATAATACGTGTATA-T---AGAGAAGGG-G------AA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGT-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTAGA--CAGGT-CTCTG-CTTT-CATCACTTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------GG-ACA-CT--GGTAAG-TATG-GGC-CGTAATAT-T-TAT-A-AAAACACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGCTA
gi|28642 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---ATAGAAGGG-GG---AAAA----TGCTGT-AT---TAAAATGTCGTTGTTT-GGGGGA-C-AGTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CATGT-CACTG-TTTT-CAAAACTTAAGAA---TACTG-TGCTTTCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TAT-------GTAATTG-T-TAT-C-AGAACACCT-AT-CGA--GGGGTACCTAAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28643 : CAAATCATTATTTAATGTATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACAAGTATA-T---AGAAAAGGG-GA---GAA-----TGTTGT-AT---TAAATTA-CATTGTTTGGGG-GA-C-ATTT------T-----TGGA--T-A-TGACAAAAT---AGCAG-------TTGTGGA--CTGGT-CACTG-CTTT-CTAAACTTGGAGG---TATTG-GACTTCCTTAAGATC--T--A---------------------A--GGTAAG-TATG-GGC-CATAATTG-T-TAT-C-AAAACACCT-AA-C-A--GGGGTGAATGAGGAAAATGGTGACTGC-T-AG-TGTCA-ATCCA-ACTCA-GATATATTGTTA
gi|28644 : CAAATTATTATCTAATGCATTTCATTTGGGGTTGATT-----TTAATGATTT-AAAAAACATGTATA-T---AGAGAAGGG-GG---GGGGGGGGTGCTGT-AT---AAAATTG-CATTGTTCAGGGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGAT-CACTG-CTTT-CTAAACTTGGGAG---TATTG-GGCCTTCTCAAGATC--T--AAG-----------GA-ACA-CG--GGTAA--------------AAGTG-T-TAT-C-AAAACACTT-AT-C-A--GAAGTACCCGAGGACCATAGTCTCTGC-A-AGTTGTCA-ATCCA-CCCAA-GATCTATTGTT
gi|28645 : CAAATTATTGTTTGATGTATTTCCCTTCTGGTTG--TGTAATCTAATAATTT-ATAATACATGTATG-T---AGACAAG
gi|28646 : CAAATTATTATTTAATGCATTTCATTTCAGGTTGATTGTAACTTAATTATTCAATAATACGTGTATA-T---
gi|28647 : AATTATTATTTAATGCATTTTATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATTTATA-T----GCAAAAGG-GG---GAAA----TGCTGT-AA---TAAATTG-CATTGTTCGGTGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTT-CTAAACTTGGGAG---TATTG-GGCTTTCGCAAGATC--T--AAA-----------GA-ACA-CA--GGTAAG-TATG-GAC-CGTAATTG-T-TAT-T-AAAACACCA-AT-G-A--GGGGTATCTGAGGACCATGGCTTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28648 : TTATTGTTTTATGCTTTTCATTTCTGATTGTGTGTAA---------TC-ATAATACATGTATA-TTGTATATAAAAATAA---AAAA----TG-TGC-ATAATTACATTG-CATTGT
gi|28649 : TTAT---ATGATATATGTGCAAT---AGACAAGGA-AA---AAAA----TGCTATTAA---TAAATTGGCATTGTTTTTGGGGA-C-TTTT------TAAAGATGAA--TTA-TGAGAAAATT--GGCAA-------TTGTGGA--CAGTT-CTCTG-GTTC-CAAAACTC-TGAA---TATTGCGGCTTCCTC-AGATA--TTAAAA-----------GA-AT--TAT-TGTTAT-TATT-GACTTGTAA-TG-CATATAA-AAAACAACT-TT-C-A--GGTGTAGCTGCAAACTACAGTCTATAT-AGAT-TGTCA-ACCCA-C--AACGATCCATTGTTacatgtttg
gi|28650 : TGTATA-T---AGAGAAGGG-GGAGGGGAA----TGCTGT-AT---TAAATTG-CATTGTTTGGG
gi|28651 : A----TGCT---AA---TAAACAG-CATTGTTCGGAGGG-----TTTCTTA--T-----TTAA--T-AATTAGAAAAT---AAC----------CGTTGATTCAGGT-CAATG-CTTT-CTAAATTCTGGAA---TCCTG-GGCGTCCTCAAGATC--T--A---------------------------------TT-GGT-TTTAAGTG-C-TTT-T-AAAACACAT-TT-C-T--GGGGTAACTGCAGATCACAGTGTCTTC-A-GA-TGCCA-ATCCA-CCTGA-GATATATTGTTAatatgagaa
gi|28652 : ataaaaagggtT-AA---TAGATTG-CATTGTTCAGGGAAC-CTATTTCAAAATT-----TGAA--TTA-TGAGAAAAT---AGTAA-------TTGTGGA--TACAT-CA
gi|28653 : TTA-CATTGTTCAGGGGAAGC-TTTTACAAT-T-----TGAA--TCA-TAAGAAAAT---TGCAA-------TTGTGGA--CATGC-CAATG-CCTT-CAAAGCGTTGGAG---TATTG-AGCTTCCTCGAGATC--T--AAA-----------GA-AGA-CA--CGTAAT-TTTG-GGC-TTGAATTA-T-T
gi|28654 : ------T-----TGGAATT-A-TGAGAAAAT---TGCCA-------TTGTGGA--CAGGT-TAATG-CCTT-CAAAGCTTTGAAG---TATTG-AACTTCCTCACGGTC--T--AAT-----------GA-ACA-TA--GGTAAT-TGTG-GGC-TTTAATTG-G-TAT-C-AAAACAACT-AT-T-T--AGGGTAGCTGAATATCATGGTCTCTGT-A-AG-TTTCA-ATCTA-CCTGA-GATCTATTGTTA
gi|28655 : GAGCAAATCCAAGCAAGAATTGGTTG-GGA--AAAGTACACTGGCTTTGCAAACAGTAGGAGACTCATTG-G--TTCGTATAGATCGTC--AAGAGATTTTTGTAGATACA-CAATGTTAAGATCTGAGGC-CGTAATTGGT-TAT-CGAAAACACCT-AT-C-A---GGGT-GCTGAGAA--ATA---TCTGC-A-A----TCA---CTA-CATGA-GA-CTAT
gi|28656 : T-TAACACTTGGGAG---TATTG-GGCTTTCACAAGATC--T--AAA-----------GA-ACA-CA--CGTA----ATG-GGA-TGTAATTG-T-TAT-C-AAAACACCT-ATGA-A--GGGGTA
gi|28657 : --AAG-----------AA-ACAACA--GGTAAA-TATG-GAC-CGTAATTG-T-TTT----AAACATCTGAC-C-AATGGGGTATCT-AGGACCATGGCTTCTACAA-AG-TGTCAGATCCAGCCTGA-GATCTATTGTTA
Alignments
lowQualScore : 111 222222222222 1 1111111 111111111111
lowQualScore : 3 0 4 3 666 0 4 8888 8888 3 6666 6 1 000 4 777777777777 55 0 3 999 0000000 44 3 3 1 3 3 555 3 55555 555555555555 3 3 77 77 3 44 3 3 777 3 3 3 44 1 3 3 3 3 3 3
lowQualScore : . . . . ... . . .... .... . .... . . ... . ............ .. . . ... ....... .. . . . . . ... . ..... ............ . . .. .. . .. . . ... . . . .. . . . . . . .
lowQualScore : 9 1 0 6 444 7 4 7777 5555 6 8888 7 2 555 0 444444444444 00 9 6 222 8888888 66 3 6 7 3 1 888 3 11111 333333333333 1 1 33 88 1 33 1 1 777 3 3 3 66 0 6 6 6 6 6 6
consensus : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
Reference ( family-912 ) : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28640 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGCTTGTAACTTGATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TTAATTG-CATTGTTTGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--TAGGT-CACTG-TTTTCAAATC-TTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------AA-ATA-CA--GGTAAG-TATG-CGC-TGTAATTG-T-TAT-C-AAAATACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTACTGTTA
gi|28641 : CAAAGTATTATTCAATACATTTCATTTCTGGTTGTTTGTAACTTCATTATTC-ATAATACGTGTATA-T---AGAGAAGGG-G------AA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGT-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTAGA--CAGGT-CTCTG-CTTTCATCAC-TTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------GG-ACA-CT--GGTAAG-TATG-GGC-CGTAATAT-T-TAT-A-AAAACACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGCTA
gi|28642 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---ATAGAAGGG-GG---AAAA----TGCTGT-AT---TAAAATGTCGTTGTTT-GGGGGA-C-AGTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CATGT-CACTG-TTTTCAAAAC-TTAAGAA---TACTG-TGCTTTCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TAT-------GTAATTG-T-TAT-C-AGAACACCT-AT-CGA--GGGGTACCTAAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28643 : CAAATCATTATTTAATGTATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACAAGTATA-T---AGAAAAGGG-GA---GAA-----TGTTGT-AT---TAAATTA-CATTGTTTGGGG-GA-C-ATTT------T-----TGGA--T-A-TGACAAAAT---AGCAG-------TTGTGGA--CTGGT-CACTG-CTTTCTAAAC-TTGGAGG---TATTG-GACTTCCTTAAGATC--T--A---------------------A--GGTAAG-TATG-GGC-CATAATTG-T-TAT-C-AAAACACCT-AA-C-A--GGGGTGAATGAGGAAAATGGTGACTGC-T-AG-TGTCA-ATCCA-ACTCA-GATATATTGTTA
gi|28644 : CAAATTATTATCTAATGCATTTCATTTGGGGTTGATT-----TTAATGATTT-AAAAAACATGTATA-T---AGAGAAGGG-GG---GGGGGGGGTGCTGT-AT---AAAATTG-CATTGTTCAGGGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGAT-CACTG-CTTTCTAAAC-TTGGGAG---TATTG-GGCCTTCTCAAGATC--T--AAG-----------GA-ACA-CG--GGTAA--------------AAGTG-T-TAT-C-AAAACACTT-AT-C-A--GAAGTACCCGAGGACCATAGTCTCTGC-A-AGTTGTCA-ATCCA-CCCAA-GATCTATTGTT
gi|28645 : CAAATTATTGTTTGATGTATTTCCCTTCTGGTTG--TGTAATCTAATAATTT-ATAATACATGTATG-T---AGACAAG
gi|28646 : CAAATTATTATTTAATGCATTTCATTTCAGGTTGATTGTAACTTAATTATTCAATAATACGTGTATA-T---
gi|28647 : AATTATTATTTAATGCATTTTATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATTTATA-T----GCAAAAGG-GG---GAAA----TGCTGT-AA---TAAATTG-CATTGTTCGGTGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCTAAAC-TTGGGAG---TATTG-GGCTTTCGCAAGATC--T--AAA-----------GA-ACA-CA--GGTAAG-TATG-GAC-CGTAATTG-T-TAT-T-AAAACACCA-AT-G-A--GGGGTATCTGAGGACCATGGCTTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28648 : TTATTGTTTTATGCTTTTCATTTCTGATTGTGTGTAA---------TC-ATAATACATGTATA-TTGTATATAAAAATAA---AAAA----TG-TGC-ATAATTACATTG-CATTGT
gi|28649 : TTAT---ATGATATATGTGCAAT---AGACAAGGA-AA---AAAA----TGCTATTAA---TAAATTGGCATTGTTTTTGGGGA-C-TTTT------TAAAGATGAA--TTA-TGAGAAAATT--GGCAA-------TTGTGGA--CAGTT-CTCTG-GTTCCAAAAC-TC-TGAA---TATTGCGGCTTCCTC-AGATA--TTAAAA-----------GA-AT--TAT-TGTTAT-TATT-GACTTGTAA-TG-CATATAA-AAAACAACT-TT-C-A--GGTGTAGCTGCAAACTACAGTCTATAT-AGAT-TGTCA-ACCCA-C--AACGATCCATTGTTacatgtttg
gi|28650 : TGTATA-T---AGAGAAGGG-GGAGGGGAA----TGCTGT-AT---TAAATTG-CATTGTTTGGG
gi|28651 : A----TGCT---AA---TAAACAG-CATTGTTCGGAGGG-----TTTCTTA--T-----TTAA--T-AATTAGAAAAT---AAC----------CGTTGATTCAGGT-CAATG-CTTTCTAAAT-TCTGGAA---TCCTG-GGCGTCCTCAAGATC-------------------------------------TATT-GGT-TTTAAGTG-C-TTT-T-AAAACACAT-TT-C-T--GGGGTAACTGCAGATCACAGTGTCTTC-A-GA-TGCCA-ATCCA-CCTGA-GATATATTGTTAatatgagaa
gi|28652 : ataaaaagggtT-AA---TAGATTG-CATTGTTCAGGGAAC-CTATTTCAAAATT-----TGAA--TTA-TGAGAAAAT---AGTAA-------TTGTGGA--TACAT-CA
gi|28653 : TTA-CATTGTTCAGGGGAAGC-TTTTACAAT-T-----TGAA--TCA-TAAGAAAAT---TGCAA-------TTGTGGA--CATGC-CAATG-CCTTCAAAGC-GTTGGAG---TATTG-AGCTTCCTCGAGATC--T--AAA-----------GA-AGA-CA--CGTAAT-TTTG-GGC-TTGAATTA-T-T
gi|28654 : ------T-----TGGAATT-A-TGAGAAAAT---TGCCA-------TTGTGGA--CAGGT-TAATG-CCTTCAAAGC-TTTGAAG---TATTG-AACTTCCTCACGGTC--T--AAT-----------GA-ACA-TA--GGTAAT-TGTG-GGC-TTTAATTG-G-TAT-C-AAAACAACT-AT-T-T--AGGGTAGCTGAATATCATGGTCTCTGT-A-AG-TTTCA-ATCTA-CCTGA-GATCTATTGTTA
gi|28655 : GAGCAAATCCAAGCAAGAATTGGTTG-GGA--AAAGTACACTGGCTTTGCAAACAGTAGGAGACTCATTG-G--TTCGTATAGATCGTC--AAGAGATTTTTGTAGATACA-CAATGTTAAGATCTGAGGC-CGTAATTGGT-TAT-CGAAAACACCT-AT-C-A---GGGT-GCTGAGAA--ATA---TCTGC-A-A----TCA---CTA-CATGA-GA-CTAT
gi|28656 : TTAACAC-TTGGGAG---TATTG-GGCTTTCACAAGATC--T--AAA-----------GA-ACA-CA--CGTA----ATG-GGA-TGTAATTG-T-TAT-C-AAAACACCT-ATGA-A--GGGGTA
gi|28657 : --AAG-----------AA-ACAACA--GGTAAA-TATG-GAC-CGTAATTG-T-TTT----AAACATCTGAC-C-AATGGGGTATCT-AGGACCATGGCTTCTACAA-AG-TGTCAGATCCAGCCTGA-GATCTATTGTTA
Alignments
lowQualScore : 111 222222222222 1 1111111 111111111111
lowQualScore : 3 0 4 3 666 0 4 8888 8888 3 6666 6 1 000 4 777777777777 55 0 3 999 0000000 44 3 3 1 3 3 555 3 55555 555555555555 3 3 77 77 3 44 3 3 777 3 3 3 44 1 3 3 3 3 3 3
lowQualScore : . . . . ... . . .... .... . .... . . ... . ............ .. . . ... ....... .. . . . . . ... . ..... ............ . . .. .. . .. . . ... . . . .. . . . . . . .
lowQualScore : 9 1 0 6 444 7 4 7777 5555 6 8888 7 2 555 0 444444444444 00 9 6 222 8888888 66 3 6 7 3 1 888 3 11111 333333333333 1 1 33 88 1 33 1 1 777 3 3 3 66 0 6 6 6 6 6 6
consensus : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
Reference ( family-912 ) : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28640 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGCTTGTAACTTGATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TTAATTG-CATTGTTTGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--TAGGT-CACTG-TTTTCAAATC-TTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------AA-ATA-CA--GGTAAG-TATG-CGC-TGTAATTG-T-TAT-C-AAAATACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTACTGTTA
gi|28641 : CAAAGTATTATTCAATACATTTCATTTCTGGTTGTTTGTAACTTCATTATTC-ATAATACGTGTATA-T---AGAGAAGGG-G------AA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGT-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTAGA--CAGGT-CTCTG-CTTTCATCAC-TTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------GG-ACA-CT--GGTAAG-TATG-GGC-CGTAATAT-T-TAT-A-AAAACACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGCTA
gi|28642 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---ATAGAAGGG-GG---AAAA----TGCTGT-AT---TAAAATGTCGTTGTTT-GGGGGA-C-AGTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CATGT-CACTG-TTTTCAAAAC-TTAAGAA---TACTG-TGCTTTCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TAT-------GTAATTG-T-TAT-C-AGAACACCT-AT-CGA--GGGGTACCTAAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28643 : CAAATCATTATTTAATGTATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACAAGTATA-T---AGAAAAGGG-GA---GAA-----TGTTGT-AT---TAAATTA-CATTGTTTGGGG-GA-C-ATTT------T-----TGGA--T-A-TGACAAAAT---AGCAG-------TTGTGGA--CTGGT-CACTG-CTTTCTAAAC-TTGGAGG---TATTG-GACTTCCTTAAGATC--T--A---------------------A--GGTAAG-TATG-GGC-CATAATTG-T-TAT-C-AAAACACCT-AA-C-A--GGGGTGAATGAGGAAAATGGTGACTGC-T-AG-TGTCA-ATCCA-ACTCA-GATATATTGTTA
gi|28644 : CAAATTATTATCTAATGCATTTCATTTGGGGTTGATT-----TTAATGATTT-AAAAAACATGTATA-T---AGAGAAGGG-GG---GGGGGGGGTGCTGT-AT---AAAATTG-CATTGTTCAGGGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGAT-CACTG-CTTTCTAAAC-TTGGGAG---TATTG-GGCCTTCTCAAGATC--T--AAG-----------GA-ACA-CG--GGTAA--------------AAGTG-T-TAT-C-AAAACACTT-AT-C-A--GAAGTACCCGAGGACCATAGTCTCTGC-A-AGTTGTCA-ATCCA-CCCAA-GATCTATTGTT
gi|28645 : CAAATTATTGTTTGATGTATTTCCCTTCTGGTTG--TGTAATCTAATAATTT-ATAATACATGTATG-T---AGACAAG
gi|28646 : CAAATTATTATTTAATGCATTTCATTTCAGGTTGATTGTAACTTAATTATTCAATAATACGTGTATA-T---
gi|28647 : AATTATTATTTAATGCATTTTATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATTTATA-T----GCAAAAGG-GG---GAAA----TGCTGT-AA---TAAATTG-CATTGTTCGGTGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCTAAAC-TTGGGAG---TATTG-GGCTTTCGCAAGATC--T--AAA-----------GA-ACA-CA--GGTAAG-TATG-GAC-CGTAATTG-T-TAT-T-AAAACACCA-AT-G-A--GGGGTATCTGAGGACCATGGCTTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28648 : TTATTGTTTTATGCTTTTCATTTCTGATTGTGTGTAA---------TC-ATAATACATGTATA-TTGTATATAAAAATAA---AAAA----TG-TGC-ATAATTACATTG-CATTGT
gi|28649 : TTAT---ATGATATATGTGCAAT---AGACAAGGA-AA---AAAA----TGCTATTAA---TAAATTGGCATTGTTTTTGGGGA-C-TTTT------TAAAGATGAA--TTA-TGAGAAAATT--GGCAA-------TTGTGGA--CAGTT-CTCTG-GTTCCAAAAC-TC-TGAA---TATTGCGGCTTCCTC-AGATA--TTAAAA-----------GA-AT--TAT-TGTTAT-TATT-GACTTGTAA-TG-CATATAA-AAAACAACT-TT-C-A--GGTGTAGCTGCAAACTACAGTCTATAT-AGAT-TGTCA-ACCCA-C--AACGATCCATTGTTacatgtttg
gi|28650 : TGTATA-T---AGAGAAGGG-GGAGGGGAA----TGCTGT-AT---TAAATTG-CATTGTTTGGG
gi|28651 : A----TGCT---AA---TAAACAG-CATTGTTCGGAGGG-----TTTCTTA--T-----TTAA--T-AATTAGAAAAT---AAC----------CGTTGATTCAGGT-CAATG-CTTTCTAAAT-TCTGGAA---TCCTG-GGCGTCCTCAAGATC-------------------------------------TATT-GGT-TTTAAGTG-C-TTT-T-AAAACACAT-TT-C-T--GGGGTAACTGCAGATCACAGTGTCTTC-A-GA-TGCCA-ATCCA-CCTGA-GATATATTGTTAatatgagaa
gi|28652 : ataaaaagggtT-AA---TAGATTG-CATTGTTCAGGGAAC-CTATTTCAAAATT-----TGAA--TTA-TGAGAAAAT---AGTAA-------TTGTGGA--TACAT-CA
gi|28653 : TTA-CATTGTTCAGGGGAAGC-TTTTACAAT-T-----TGAA--TCA-TAAGAAAAT---TGCAA-------TTGTGGA--CATGC-CAATG-CCTTCAAAGC-GTTGGAG---TATTG-AGCTTCCTCGAGATC--T--AAA-----------GA-AGA-CA--CGTAAT-TTTG-GGC-TTGAATTA-T-T
gi|28654 : ------T-----TGGAATT-A-TGAGAAAAT---TGCCA-------TTGTGGA--CAGGT-TAATG-CCTTCAAAGC-TTTGAAG---TATTG-AACTTCCTCACGGTC--T--AAT-----------GA-ACA-TA--GGTAAT-TGTG-GGC-TTTAATTG-G-TAT-C-AAAACAACT-AT-T-T--AGGGTAGCTGAATATCATGGTCTCTGT-A-AG-TTTCA-ATCTA-CCTGA-GATCTATTGTTA
gi|28655 : GAGCAAATCCAAGCAAGAATTGGTTG-GGA--AAAGTACACTGGCTTTGCAAACAGTAGGAGACTCATTG-G--TTCGTATAGATCGTC--AAGAGATTTTTGTAGATACA-CAATGTTAAGATCTGAGGC-CGTAATTGGT-TAT-CGAAAACACCT-AT-C-A---GGGT-GCTGAGAA--ATA---TCTGC-A-A----TCA---CTA-CATGA-GA-CTAT
gi|28656 : TTAACAC-TTGGGAG---TATTG-GGCTTTCACAAGATC--T--AAA-----------GA-ACA-CA--CGTA----ATG-GGA-TGTAATTG-T-TAT-C-AAAACACCT-ATGA-A--GGGGTA
gi|28657 : --AAG-----------AA-ACAACA--GGTAAA-TATG-GAC-CGTAATTG-T-TTT----AAACATCTGAC-C-AATGGGGTATCT-AGGACCATGGCTTCTACAA-AG-TGTCAGATCCAGCCTGA-GATCTATTGTTA
blockSeqs : T A A TGT T GAGG GGGG T TAAT T G AAG T CAAAATT AT T A CCA GAATTGG TT A G A A G ACT C TTA GAGATTTTTGTA T A AT GA A TT G A AA G G G AT C A G T G G C
blockSeqs : T . . . . G . . T G G GA . TAAAGA . T . T . . . . A . A . . GTC G . . T G . C . . CG . . . . C . . . . . .
blockSeqs : T . . . . A . . T . A GA . ACAATT . C . . . . . . T . G . . T G . . . G . C . . A . . . . A . . . . . .
blockSeqs : A . . . . G . . T . G GA . CTTAT . . . . . . . . T . G . . T G . . . G . C . . C . . . . C . . . . . .
blockSeqs : A . . . . G . . T . T AC . T . . . . . . . . T . G . . T A . . . G . T . . C . . . . T . . . . . .
blockSeqs : T . . . . A . . A . G A . T . . . . . . . . A . T . . T A . . . T . T . . C . . . . G . . . . . .
blockSeqs : T . . . . A . . A . G A . T . . . . . . . . T . T . . T A . . . T . T . . T . . . . A . . . . . .
blockSeqs : . . . . . . . . T . A A . T . . . . . . . . A . T . . T T . . . T . C . . T . . . . G . . . . . .
blockSeqs : . . . . . A . A G . T . . . . . . . . A . A . . T A . . . A . T . . C . . . . G . . . . . .
blockSeqs : . . . A . . T . . . . . . . . C . G . . T G . . . . . C . . C . . . . T . . . . . .
blockSeqs : . . . . . A . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons : GA*
originalCons : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
finalCons : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
Alignments
lowQualScore : 111 222222222222 1 1111111 111111111111
lowQualScore : 3 0 4 3 666 0 4 8888 8888 3 6666 6 1 000 4 777777777777 55 0 3 999 0000000 44 3 3 1 3 3 555 3 55555 555555555555 3 3 77 77 3 44 3 3 777 3 3 3 44 1 3 3 3 3 3 3
lowQualScore : . . . . ... . . .... .... . .... . . ... . ............ .. . . ... ....... .. . . . . . ... . ..... ............ . . .. .. . .. . . ... . . . .. . . . . . . .
lowQualScore : 9 1 0 6 444 7 4 7777 5555 6 8888 7 2 555 0 444444444444 00 9 6 222 8888888 66 3 6 7 3 1 888 3 11111 333333333333 1 1 33 88 1 33 1 1 777 3 3 3 66 0 6 6 6 6 6 6
consensus : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
Reference ( family-912 ) : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCAAAAC-TTGGGAG---TATTG-GGCTTCCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TATG-GGC-CGTAATTG-T-TAT-C-AAAACACCT-AT-C-A--GGGGTANCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28640 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGCTTGTAACTTGATTATTC-ATAATACATGTATA-T---AGAGAAGGG-GG---GAAA----TGCTGT-AT---TTAATTG-CATTGTTTGGGGGGA-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--TAGGT-CACTG-TTTTCAAATC-TTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------AA-ATA-CA--GGTAAG-TATG-CGC-TGTAATTG-T-TAT-C-AAAATACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTACTGTTA
gi|28641 : CAAAGTATTATTCAATACATTTCATTTCTGGTTGTTTGTAACTTCATTATTC-ATAATACGTGTATA-T---AGAGAAGGG-G------AA----TGCTGT-AT---TAAATTG-CATTGTTCGGGGT-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTAGA--CAGGT-CTCTG-CTTTCATCAC-TTGGGAG---TATTG-GGCTTTCTCAAGATC--T--AAG-----------GG-ACA-CT--GGTAAG-TATG-GGC-CGTAATAT-T-TAT-A-AAAACACCT-AT-C-A--GGGGTACCTGAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGCTA
gi|28642 : CAAATTATTATTTAATGCATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATGTATA-T---ATAGAAGGG-GG---AAAA----TGCTGT-AT---TAAAATGTCGTTGTTT-GGGGGA-C-AGTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CATGT-CACTG-TTTTCAAAAC-TTAAGAA---TACTG-TGCTTTCTCAAGATC--T--AAG-----------GA-ACA-CA--GGTAAG-TAT-------GTAATTG-T-TAT-C-AGAACACCT-AT-CGA--GGGGTACCTAAGGACCATGGTCTCTGC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28643 : CAAATCATTATTTAATGTATTTCATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACAAGTATA-T---AGAAAAGGG-GA---GAA-----TGTTGT-AT---TAAATTA-CATTGTTTGGGG-GA-C-ATTT------T-----TGGA--T-A-TGACAAAAT---AGCAG-------TTGTGGA--CTGGT-CACTG-CTTTCTAAAC-TTGGAGG---TATTG-GACTTCCTTAAGATC--T--A---------------------A--GGTAAG-TATG-GGC-CATAATTG-T-TAT-C-AAAACACCT-AA-C-A--GGGGTGAATGAGGAAAATGGTGACTGC-T-AG-TGTCA-ATCCA-ACTCA-GATATATTGTTA
gi|28644 : CAAATTATTATCTAATGCATTTCATTTGGGGTTGATT-----TTAATGATTT-AAAAAACATGTATA-T---AGAGAAGGG-GG---GGGGGGGGTGCTGT-AT---AAAATTG-CATTGTTCAGGGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGAT-CACTG-CTTTCTAAAC-TTGGGAG---TATTG-GGCCTTCTCAAGATC--T--AAG-----------GA-ACA-CG--GGTAA--------------AAGTG-T-TAT-C-AAAACACTT-AT-C-A--GAAGTACCCGAGGACCATAGTCTCTGC-A-AGTTGTCA-ATCCA-CCCAA-GATCTATTGTT
gi|28645 : CAAATTATTGTTTGATGTATTTCCCTTCTGGTTG--TGTAATCTAATAATTT-ATAATACATGTATG-T---AGACAAG
gi|28646 : CAAATTATTATTTAATGCATTTCATTTCAGGTTGATTGTAACTTAATTATTCAATAATACGTGTATA-T---
gi|28647 : AATTATTATTTAATGCATTTTATTTCTGGTTGTTTGTAACTTAATTATTC-ATAATACATTTATA-T----GCAAAAGG-GG---GAAA----TGCTGT-AA---TAAATTG-CATTGTTCGGTGG-A-C-ATTT------T-----TGGA--T-A-TGAGAAAAT---AGCAA-------TTGTGGA--CAGGT-CACTG-CTTTCTAAAC-TTGGGAG---TATTG-GGCTTTCGCAAGATC--T--AAA-----------GA-ACA-CA--GGTAAG-TATG-GAC-CGTAATTG-T-TAT-T-AAAACACCA-AT-G-A--GGGGTATCTGAGGACCATGGCTTCTAC-A-AG-TGTCA-ATCCA-CCTGA-GATCTATTGTTA
gi|28648 : TTATTGTTTTATGCTTTTCATTTCTGATTGTGTGTAA---------TC-ATAATACATGTATA-TTGTATATAAAAATAA---AAAA----TG-TGC-ATAATTACATTG-CATTGT
gi|28649 : TTAT---ATGATATATGTGCAAT---AGACAAGGA-AA---AAAA----TGCTATTAA---TAAATTGGCATTGTTTTTGGGGA-C-TTTT------TAAAGATGAA--TTA-TGAGAAAATT--GGCAA-------TTGTGGA--CAGTT-CTCTG-GTTCCAAAAC-TC-TGAA---TATTGCGGCTTCCTC-AGATA--TTAAAA-----------GA-AT--TAT-TGTTAT-TATT-GACTTGTAA-TG-CATATAA-AAAACAACT-TT-C-A--GGTGTAGCTGCAAACTACAGTCTATAT-AGAT-TGTCA-ACCCA-C--AACGATCCATTGTTacatgtttg
gi|28650 : TGTATA-T---AGAGAAGGG-GGAGGGGAA----TGCTGT-AT---TAAATTG-CATTGTTTGGG
gi|28651 : A----TGCT---AA---TAAACAG-CATTGTTCGGAGGG-----TTTCTTA--T-----TTAA--T-AATTAGAAAAT---AAC----------CGTTGATTCAGGT-CAATG-CTTTCTAAAT-TCTGGAA---TCCTG-GGCGTCCTCAAGATC-------------------------------------TATT-GGT-TTTAAGTG-C-TTT-T-AAAACACAT-TT-C-T--GGGGTAACTGCAGATCACAGTGTCTTC-A-GA-TGCCA-ATCCA-CCTGA-GATATATTGTTAatatgagaa
gi|28652 : ataaaaagggtT-AA---TAGATTG-CATTGTTCAGGGAAC-CTATTTCAAAATT-----TGAA--TTA-TGAGAAAAT---AGTAA-------TTGTGGA--TACAT-CA
gi|28653 : TTA-CATTGTTCAGGGGAAGC-TTTTACAAT-T-----TGAA--TCA-TAAGAAAAT---TGCAA-------TTGTGGA--CATGC-CAATG-CCTTCAAAGC-GTTGGAG---TATTG-AGCTTCCTCGAGATC--T--AAA-----------GA-AGA-CA--CGTAAT-TTTG-GGC-TTGAATTA-T-T
gi|28654 : ------T-----TGGAATT-A-TGAGAAAAT---TGCCA-------TTGTGGA--CAGGT-TAATG-CCTTCAAAGC-TTTGAAG---TATTG-AACTTCCTCACGGTC--T--AAT-----------GA-ACA-TA--GGTAAT-TGTG-GGC-TTTAATTG-G-TAT-C-AAAACAACT-AT-T-T--AGGGTAGCTGAATATCATGGTCTCTGT-A-AG-TTTCA-ATCTA-CCTGA-GATCTATTGTTA
gi|28655 : GAGCAAATCCAAGCAAGAATTGGTTG-GGA--AAAGTACACTGGCTTTGCAAACAGTAGGAGACTCATTG-G--TTCGTATAGATCGTC--AAGAGATTTTTGTAGATACA-CAATGTTAAGATCTGAGGC-CGTAATTGGT-TAT-CGAAAACACCT-AT-C-A---GGGT-GCTGAGAA--ATA---TCTGC-A-A----TCA---CTA-CATGA-GA-CTAT
gi|28656 : TTAACAC-TTGGGAG---TATTG-GGCTTTCACAAGATC--T--AAA-----------GA-ACA-CA--CGTA----ATG-GGA-TGTAATTG-T-TAT-C-AAAACACCT-ATGA-A--GGGGTA
gi|28657 : --AAG-----------AA-ACAACA--GGTAAA-TATG-GAC-CGTAATTG-T-TTT----AAACATCTGAC-C-AATGGGGTATCT-AGGACCATGGCTTCTACAA-AG-TGTCAGATCCAGCCTGA-GATCTATTGTTA