lowQualScore : 1 11111
lowQualScore : 2 33 4 11111 5555 2 55555
lowQualScore : . .. . ..... .... . .....
lowQualScore : 4 22 1 88888 0000 4 99999
consensus : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
Reference ( gi|75693 ) : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75695 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75694 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75698 : TACTGTGGTTTCATCAGTATT-C--G-TG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75700 : TACTGTGGTTTCATCAATATT-C--AATG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75699 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----GTCAA-TTTTCGTGGATTGGATCAGGCAAAA
gi|75702 : TACTGTGGTTTCATCAATATT-C--G-TGCACGTGGC----ATAAA-TTTTCG-----TGGATAAGGCAAA
gi|75703 : TACTGTGGTTTCATCAATATTACGGG-TG-----GGC----ATCAA---TTCG-----TGGATCAGACAA
gi|75704 : TACT-TGATTTCATCAATATT-C----CGCCCCTGGC----ATCAA-TTTTCG-----TGGATCAGACAAAA
gi|75701 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA-TTTTCG-----TGGAT
gi|75697 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA--TTTCG-----TGGAT
gi|75696 : TACTGTGGTTTCATCATTATT-C--GTTG-----ACC----ACCAA-TTTTCG-----TCGAT
gi|75705 : ACTGTGGTTTCATCAATATT-C--G-T------GGC----ACAAA-TTTTCG-----TGGATCAGGCAAAA
gi|75706 : ACTGTGGTTTCATTAATATT-C--A-TG-----GAC----A-CGA-TTTTCG-----TGGATTAAGCAAAA
gi|75707 : CTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75708 : CTGTGGTTTCATCAATATT-C--G-TG-----GGT----ATCAA-TTTTCG-----TGGATCGGGCAAAA
gi|75710 : CTGTG-TTTCATCAATATT-C--GGTG-----GTCGGTTATCAAATTTTCG-----TGGATCAGGCAAAA
gi|75709 : CTGTGGTTTCATCATTATT-T--GTTG-----AAC----ACCAA-TTTCCG-----TGGAT
Alignments
lowQualScore : 1 11111
lowQualScore : 2 33 3 11111 4444 2 55555
lowQualScore : . .. . ..... .... . .....
lowQualScore : 2 11 3 11111 7777 2 66666
consensus : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
Reference ( family-911 ) : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75693 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75694 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75695 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75696 : TACTGTGGTTTCATCATTATT-C--GTTG-----ACC----ACCAA-TTTTCG-----TCGAT
gi|75697 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA--TTTCG-----TGGAT
gi|75698 : TACTGTGGTTTCATCAGTATT-C--G-TG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75699 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----GTCAA-TTTTCGTGGATTGGATCAGGCAAAA
gi|75700 : TACTGTGGTTTCATCAATATT-C--AATG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75701 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA-TTTTCG-----TGGAT
gi|75702 : TACTGTGGTTTCATCAATATT-C--G-TGCACGTGGC----ATAAA-TTTTCG-----TGGATAAGGCAAA
gi|75703 : TACTGTGGTTTCATCAATATTACGGG-TG-----GGC----ATCAA---TTCG-----TGGATCAGACAA
gi|75704 : TACT-TGATTTCATCAATATT-C----CGCCCCTGGC----ATCAA-TTTTCG-----TGGATCAGACAAAA
gi|75705 : ACTGTGGTTTCATCAATATT-C--G-T------GGC----ACAAA-TTTTCG-----TGGATCAGGCAAAA
gi|75706 : ACTGTGGTTTCATTAATATT-C--A-TG-----GAC----A-CGA-TTTTCG-----TGGATTAAGCAAAA
gi|75707 : CTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75708 : CTGTGGTTTCATCAATATT-C--G-TG-----GGT----ATCAA-TTTTCG-----TGGATCGGGCAAAA
gi|75709 : CTGTGGTTTCATCATTATT-T--GTTG-----AAC----ACCAA-TTTCCG-----TGGAT
gi|75710 : CTGTG-TTTCATCAATATT-C--GGTG-----GTCGGTTATCAAATTTTCG-----TGGATCAGGCAAAA
Alignments
lowQualScore : 1 11111
lowQualScore : 2 33 3 11111 4444 2 55555
lowQualScore : . .. . ..... .... . .....
lowQualScore : 2 11 3 11111 7777 2 66666
consensus : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
Reference ( family-911 ) : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75693 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75694 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75695 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75696 : TACTGTGGTTTCATCATTATT-C--GTTG-----ACC----ACCAA-TTTTCG-----TCGAT
gi|75697 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA--TTTCG-----TGGAT
gi|75698 : TACTGTGGTTTCATCAGTATT-C--G-TG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75699 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----GTCAA-TTTTCGTGGATTGGATCAGGCAAAA
gi|75700 : TACTGTGGTTTCATCAATATT-C--AATG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75701 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA-TTTTCG-----TGGAT
gi|75702 : TACTGTGGTTTCATCAATATT-C--G-TGCACGTGGC----ATAAA-TTTTCG-----TGGATAAGGCAAA
gi|75703 : TACTGTGGTTTCATCAATATTACGGG-TG-----GGC----ATCAA---TTCG-----TGGATCAGACAA
gi|75704 : TACT-TGATTTCATCAATATT-C----CGCCCCTGGC----ATCAA-TTTTCG-----TGGATCAGACAAAA
gi|75705 : ACTGTGGTTTCATCAATATT-C--G-T------GGC----ACAAA-TTTTCG-----TGGATCAGGCAAAA
gi|75706 : ACTGTGGTTTCATTAATATT-C--A-TG-----GAC----A-CGA-TTTTCG-----TGGATTAAGCAAAA
gi|75707 : CTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75708 : CTGTGGTTTCATCAATATT-C--G-TG-----GGT----ATCAA-TTTTCG-----TGGATCGGGCAAAA
gi|75709 : CTGTGGTTTCATCATTATT-T--GTTG-----AAC----ACCAA-TTTCCG-----TGGAT
gi|75710 : CTGTG-TTTCATCAATATT-C--GGTG-----GTCGGTTATCAAATTTTCG-----TGGATCAGGCAAAA
blockSeqs : A GG T CACGT GGTT A TGGAT
blockSeqs : . . T CCCCT . . .
blockSeqs : . . A . . . .
blockSeqs : . . T . . . .
blockSeqs : . . T . . . .
blockSeqs : . . G . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
finalCons : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
Alignments
lowQualScore : 1 11111
lowQualScore : 2 33 3 11111 4444 2 55555
lowQualScore : . .. . ..... .... . .....
lowQualScore : 2 11 3 11111 7777 2 66666
consensus : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
Reference ( family-911 ) : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75693 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75694 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75695 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75696 : TACTGTGGTTTCATCATTATT-C--GTTG-----ACC----ACCAA-TTTTCG-----TCGAT
gi|75697 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA--TTTCG-----TGGAT
gi|75698 : TACTGTGGTTTCATCAGTATT-C--G-TG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75699 : TACTGTGGTTTCATCAATATT-C--G-TG-----GGC----GTCAA-TTTTCGTGGATTGGATCAGGCAAAA
gi|75700 : TACTGTGGTTTCATCAATATT-C--AATG-----GGC----ATCAA-TTTTCA-----TGGATCAGGCAAAA
gi|75701 : TACTGTGGTTTCATCATTATT-C--GTTG-----AAC----ACCAA-TTTTCG-----TGGAT
gi|75702 : TACTGTGGTTTCATCAATATT-C--G-TGCACGTGGC----ATAAA-TTTTCG-----TGGATAAGGCAAA
gi|75703 : TACTGTGGTTTCATCAATATTACGGG-TG-----GGC----ATCAA---TTCG-----TGGATCAGACAA
gi|75704 : TACT-TGATTTCATCAATATT-C----CGCCCCTGGC----ATCAA-TTTTCG-----TGGATCAGACAAAA
gi|75705 : ACTGTGGTTTCATCAATATT-C--G-T------GGC----ACAAA-TTTTCG-----TGGATCAGGCAAAA
gi|75706 : ACTGTGGTTTCATTAATATT-C--A-TG-----GAC----A-CGA-TTTTCG-----TGGATTAAGCAAAA
gi|75707 : CTGTGGTTTCATCAATATT-C--G-TG-----GGC----ATCAA-TTTTCG-----TGGATCAGGCAAAA
gi|75708 : CTGTGGTTTCATCAATATT-C--G-TG-----GGT----ATCAA-TTTTCG-----TGGATCGGGCAAAA
gi|75709 : CTGTGGTTTCATCATTATT-T--GTTG-----AAC----ACCAA-TTTCCG-----TGGAT
gi|75710 : CTGTG-TTTCATCAATATT-C--GGTG-----GTCGGTTATCAAATTTTCG-----TGGATCAGGCAAAA