lowQualScore : 111 111111111111 222222222222 11111 444444 11111111 111111 8888888888888888888888888888888888888888888888888888888888888888888 11 2222222222222222222 111111 2 1111 33
lowQualScore : 000 2 444 2 2 5 66 2 88 4 222222222222 2 2 777777777777 44444 77 222222 00000000 2 2 888888 2 6666 2 2 1 666666 9999999999999999999999999999999999999999999999999999999999999999999 1 44 1111111111111111111 99 777 777777 2 4 66 0 5 2222 888 33 1 11
lowQualScore : ... . ... . . . .. . .. . ............ . . ............ ..... .. ...... ........ . . ...... . .... . . . ...... ................................................................... . .. ................... .. ... ...... . . .. . . .... ... .. . ..
lowQualScore : 888 7 777 7 7 0 99 5 44 7 888888888888 5 7 000000000000 00000 55 222222 44444444 9 6 222222 9 9999 9 9 9 111111 0000000000000000000000000000000000000000000000000000000000000000000 2 55 2222222222222222222 88 111 666666 4 0 44 4 7 6666 999 55 0 88
consensus : AATTCCGA---ACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG-N------AATAA---GTAC-TT--TT--AA--------T-AAGTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT--------------------TA-------AATGATN-TTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCGATAACC-AAAGAAGT-CTTTTCTTGA-TTCATNTA-TTG-ATTAATCAAATACNTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
Reference ( gi|33301 ) : AATTCCAA---ACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG-A------AATAA---GTAC-TT--TTAAAA--------T-AAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT--------------------TA-------AGTGATC-TTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACCAAAAGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33302 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAAA-AGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-TCG-A------AATAA---GTA--TT--TTAAAA--------T-AAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT--------------------TA-------AGTGATC-TTTCCTCAAATTT----A-------C------TG-TTTTA---GGGAGGGGTTATTATCAATAACCAACAGAAGT-CTTTTCTTGA-TTCATATA-TTA-ATTAATCAAATACCTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
gi|33304 : AATTCCAA---ACAAG-TAAT---AGCTTTCAC-AAAA-AGCTT--GCC-TGAC--TAAAC--AA------------TTT-C--TTCA-CTG-A------AATAA---GTACTTT--TTAAAA--------T-AAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAGATCGACT------------------AT----------------TT--------------------TA-------AGTGATC-TTTCCTCAAATTTC---A-------C------TG-TTTTA---GGGCGGGGTTATTATCAATAACC-AAAGAAGT-CTTTTCTTGA-TTCATATATTTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33303 : AATTCCAA---ACAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCC-TGAC--T-AAC-AAA------------TTT-C-TTTCATCTG-A------AATAA---GTA--TT--TTAAAA--------TAAAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT--------------------TA-------AGTGATCTTTTCCTCAAATTT----A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAA-CAACAGAAGT-CTTTTCTTGA-TTCATATA-TTGAATTAATCAAATACCTGCGCCTCAG-AGAAT--GGAGGATGCATCAAT
gi|33305 : AATTCCGATGCGCAAG-TAAT---AGCTTTC-C-AAAAAAGCTT--GCC-TGGC--TAAAC-AAA------------TTT-
gi|33306 : AATTCCGATGCGCAAG-TAATCATAGCTTTC-C-AAAA-AGCTT--GCC-TGGC--TAAAC-
gi|33307 : ATTC------ACAAG-TTAT---AGCTTTC-T-AAAA-CGCTT--GCC-TGAC--TATAC-AAA------------TTT-C-TTTCA-CTG-T------ATAAA---GTAC-TT--T----A--------C-AAATGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TGAGTCGACT-------------------T----------------TT--------------------TA-------
gi|33308 : AG---ACAAG-TAAC---AGCTTTC-T-AAAA-AGCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-GTCCA-CTG-T------AATCA---CTAC-TTAATT--AA--------T-GATTGATGTT------TATCAG-ATGTACAT-GTA-CCCTGCA------TAGGTTGACT------------------AT----------------TTATAAATAACAAGTTTCCCTATA-------AATTATG-TTTCCTCAAATTTC---AAAGGTTTT------TT-TTTTA--GGGGAGGGGTTAT------CAGCC-AAAGAA-----------------ATGT--TTA-ATCAATCCAATATATACAGCTCAGAAGTATGGGGAGGGTGTATAAAT
gi|33311 : AA---ACAAG-TAAC---AGCTTTC-C-AAAA-AGCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-TTCCA-TTG-T------AATCA---GTAC-TT------AA--------T----TGATGTT------CATCAT-------AT-GTG-CCCTGCA------TAAGCTGACTTCTC--------------ATAAATAACAATAAGGCCTA--------------------TA-------AATGATG-TTTCCTTAAAT------G-------CGGGGGGGG-GTCTA--AGGGAGGGGTTACCA-----AGC--AAAGAAATGCTTTTTTAAA-TTCATTTC-TTG---TGATCCAATAAATACACCTTGGA
gi|33310 : AA---ACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTC-------------AAT-----GTAT-TT------AA--------T-GAG---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTG-------------------TAGAGAATTAATAACCGTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33309 : AA---ACAAG-TAAT---AACTTTC-C-AAAA-AGCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTC-------------AAT-----GTAT-TT------AA--------T-GAG---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTG-------------------TAGAGAATTAATAACCGTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33312 : A---ACAAACTGAA---AGCTTTC-C-AAAA-CGCTT--GCA-TGAC--TAAAC-AAA------------TTT-CTTTTCA-CTGTAAGC---AATAA---GCAC-TT------AA--------C-AGG-GATTTT------TATCAG-AGG---ATAGT--TTCTGCAAAACCGAAAGTCGACTTCTTAGGGGGAAAAACCAAT----------------TA--------------------GA-------AATGATA-TTTTCTCAAATTTCGGGG-------T------TGTTTTTA--GGGGAGTGGTTAT------CAACC-AAAGAAAT-GTTTTCTTAATTTCACTTA-AT---TTAATCAA
gi|33313 : ---ACAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GCC-TGAC--TAAAC-ACA------------TTT-C-TTTCA-ATG-T------ATTAC---GTGG-TT------AA--------T-AAGTGATATA------TATCAG-ACG---AT-GTA-CTCTACA------TAAGTCGACT------------------TT----------------TTATAGAGAATTA---------TA-------AATGATG-TTTCCTCAAATTTC---A-------C------TG-TATTAGGGGGGAGGAGGCATTATTGATAACC-AAAGAAAT-GTTTTCTTAA-TTAAT----TTG-ATTAATCAAATAAATACGCCTCAGAAGCAT--GGGGGATGAATCA
gi|33314 : ---ACAAG-TAAC---AGTTTTC-A-AAAA-AGCTT--GCCATGCCCTTAAAT-AAATGTTAACAATTTTTT-T-TTTCA-CTG-GGAAGTTAACAA---GTAC-TT------AA--------T-TGACGATGTT------TATCAGAACA---TT-GCAGATCTGCA------TAAGTCAACC------------------GT----------------TT--------------------TA-------
gi|33315 : CAAG-TAAT---AGCTTTC-C-AAAA-AGCTT--GTC-CGAC--TAAAC-AAA------------TTT-C-TTTCA-ATG-T------ATTAAGTGGTAC-AT--TT--AA--------T-ACGTGATATATACATGTATCAG-CCG---AT-GTA-CTCTAAA------TAAGTCGACT-------------------T----------------TT--------------------TA-------
gi|33316 : CAAG-TAAT---AGCTTTC-C-AAAA-TGCTT--GCC-TGAC--TAAAC-AAA------------TTTAT-TTTCA-------------ATA-----TA--TT--TTAAAAGTGGTTAAT-AAGTGATATA------TATTAG-A-------------------------TGAGTCGACT-------------------T----------------TT--------------------TATAG----AATGACG-TTTCCTCAAATTTC---A-------C------TG-ATTTA--G
gi|33317 : -AGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCT-CTG-T------AATAAGATGTAC-TC--T
gi|33318 : C-AAA------------TTT-C-TTTCA-------------AT-----GTAT-T-------------------AGGTGGT-TA-------ATCAT-ACG---AT-GTA-CTCTACA------TAAGTCGACT------------------gcacttgtaagtcgactttttataagt
Alignments
lowQualScore : 111 111111111111 333333333333333333333333333 11 111111 55555555555555555555555555555555555555555555555555555555555555555555555 1111111111111111111 11111 22
lowQualScore : 2 000 2 444 2 2 4 66 2 77 4 222222222222 2 2 33 5555 666666666666666666666666666 444 00 2 4 777777 2 444 22 2 0 999999 44444444444444444444444444444444444444444444444444444444444444444444444 7 44 6666666666666666666 88 555 88888 5 5 2 5 5 5 88 555 1 77
lowQualScore : . ... . ... . . . .. . .. . ............ . . .. .... ........................... ... .. . . ...... . ... .. . . ...... ....................................................................... . .. ................... .. ... ..... . . . . . . .. ... . ..
lowQualScore : 7 000 5 444 5 4 7 55 4 99 4 111111111111 4 5 99 3333 000000000000000000000000000 444 33 5 2 222222 5 444 77 5 5 444444 66666666666666666666666666666666666666666666666666666666666666666666666 3 66 6666666666666666666 11 555 11111 0 0 2 0 0 9 11 444 0 55
consensus : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CT----G------TAAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
Reference ( family-910 ) : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CT----G------NAAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-NTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCGATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATNTA-TTG-ATTAATCAAATACNTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
gi|33301 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CT----G------AAAT----AA---GTACTT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACCAAA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33302 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-TC----G------AAAT----AA---GTA-TT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTT----A-------C------TG-TTTTA---GGGAGGGGTTATTATCAATAACC-AACAGAAGT-CTTTTCTTGA-TTCATATA-TTA-ATTAATCAAATACCTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
gi|33303 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAA-C-AAA------------TTT-C-TTTCATCT----G------AAAT----AA---GTA-TT--TT---AAAATAAAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-TCTTTTCCTCAAATTT----A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACA-AC-AGAAGT-CTTTTCTTGA-TTCATATA-TTGAATTAATCAAATACCTGCGCCTCAG-AGAAT--GGAGGATGCATCAAT
gi|33304 : AATTCCAA---ACAAG-TAAT---AGCTTTCACAAAA-A-GCTT--GCC-TGAC--TAAAC-AA-------------TTT-C-TT-CA-CT----G------AAAT----AA---GTACTT--TTTAAAA--TAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAGATCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA---GGGCGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATATTTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33305 : AATTCCGATGCGCAAG-TAAT---AGCTTTC-CAAAAAA-GCTT--GCC-TGGC--TAAAC-AAA------------TTT-
gi|33306 : AATTCCGATGCGCAAG-TAATCATAGCTTTC-CAAAA-A-GCTT--GCC-TGGC--TAAAC-
gi|33307 : ATTC------ACAAG-TTAT---AGCTTTC-TAAAA-C-GCTT--GCC-TGAC--TATAC-AAA------------TTT-C-TTTCA-CT----G------TATA----AA---GTACTT--T-----A--CAA-ATGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TGAGTCGACT-------------------T----------------TT-TA-------
gi|33308 : ---ACAAG-TAAC---AGCTTTC-TAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-GTCCA-CT----G------TAAT----CA---CTACTTAATT---AA--TGA-TTGATGTT------TATCAG-ATGTACAT-GTA-CCCTGCA------TAGGTTGACT------------------AT----------------TTATA-------AATAACAAGTTTCCCTATAAATTA-T-GTTTCCTCAAATTTC---AAAGGTTTT------TT-TTTTA--GGGGAGGGGTTAT------CAGCC-AA-AGAA-----------------ATGT--TTA-ATCAATCCAATATATACAGCTCAGAAGTATGGGGAGGGTGTATAAAT
gi|33309 : agA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-AT----G------TA----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33310 : aA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-AT----G------TA----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33311 : aA---ACAAG-TAAC---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-TTCCA-TT----G------TAAT----CA---GTAC----TT---AA--T----TGATGTT------CATCA----T---AT-GTG-CCCTGCA------TAAGCTGACTTCTC--------------ATAAATAACAATAAGGCCTA-TA-------AATG-------------------A-T-GTTTCCTTAAAT------G-------CGGGGGGGG-GTCTA--AGGGAGGGGTTAC------CAAGC-AA-AGAAATGCTTTTTTAAA-TTCATTTC-TTG---TGATCCAATAAATACACCTTGGA
gi|33312 : aA---ACAAACTGAA---AGCTTTC-CAAAA-C-GCTT--GCA-TGAC--TAAAC-AAA------------TTT-CTTTTCA-CTGTAAG------CAAT----AA---GCAC----TT---AA--CAG-G-GATTTT------TATCAG-AGG---ATAGT--TTCTGCAAAACCGAAAGTCGACTTCTTAGGGGGAAAAACCAAT----------------TA-GA-------AATG-------------------A-T-ATTTTCTCAAATTTCGGGG-------T------TGTTTTTA--GGGGAGTGGTTAT------CAACC-AA-AGAAAT-GTTTTCTTAATTTCACTTA-AT---TTAATCAA
gi|33313 : ---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-ACA------------TTT-C-TTTCA-AT----G------TATT----AC---GTG--G--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTACA------TAAGTCGACTTTTTATAGAGA-------AT----------------TA-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TATTAGGGGGGAGGAGGCATTATTGATAACC-AA-AGAAAT-GTTTTCTTAA-TTAAT----TTG-ATTAATCAAATAAATACGCCTCAGAAGCAT--GGGGGATGAATCA
gi|33314 : ---ACAAG-TAAC---AGTTTTC-AAAAA-A-GCTT--GCCATGCCCTTAAAT-AAATGTTAACAATTTTTT-T-TTTCA-CT----GGGAAGTTAAC----AA---GTAC----TT---AA--TTG-ACGATGTT------TATCAGAACA---TT-GCAGATCTGCA------TAAGTCAACC------------------GT----------------TT-TA-------
gi|33315 : CAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GTC-CGAC--TAAAC-AAA------------TTT-C-TTTCA-AT----G------TATT----AAGTGGTACAT--TT---AA--TAC-GTGATATATACATGTATCAG-CCG---AT-GTA-CTCTAAA------TAAGTCGACT-------------------T----------------TT-TA-------
gi|33316 : CAAG-TAAT---AGCTTTC-CAAAA-T-GCTT--GCC-TGAC--TAAAC-AAA------------TTTAT-TTTCA-AT----A------TATTTTAAAA---GTGGTT-------AA--TAA-GTGATATA------TATTAG-ATG---A----------------------GTCGACT-------------------T----------------TT-TATAG----AATG-------------------A-C-GTTTCCTCAAATTTC---A-------C------TG-ATTTA--G
gi|33317 : -A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCT-CT----G----------------------------T---AA--TAA-G--------------------------AT-GTA-CTCTGCACTTG--TAAGTCGACT-------------------T----------------TT-TA-------
gi|33318 : C-AAA------------TTT-C-TTTCA-AT----G----------------------------T---AT--TAG-GTGGT-TA-------ATCAT-ACG---AT-GTA-CTCTACA------TAAGTCGACT------------------taagt
Alignments
lowQualScore : 111 111111111111 2222222222222222222222222222222 11 111111 55555555555555555555555555555555555555555555555555555555555555555555555 1111111111111111111 11111 22
lowQualScore : 2 000 2 444 2 2 4 66 2 77 4 222222222222 2 2 33 1111111111111111111111111111111 444 11 2 1 777777 2 444 33 2 1 0 555555 88888888888888888888888888888888888888888888888888888888888888888888888 7 44 6666666666666666666 88 555 22222 5 5 2 5 5 5 88 555 0 33
lowQualScore : . ... . ... . . . .. . .. . ............ . . .. ............................... ... .. . . ...... . ... .. . . . ...... ....................................................................... . .. ................... .. ... ..... . . . . . . .. ... . ..
lowQualScore : 7 000 5 444 5 4 7 55 4 99 4 111111111111 4 5 99 7777777777777777777777777777777 777 00 7 8 777777 7 777 55 7 1 2 000000 66666666666666666666666666666666666666666666666666666666666666666666666 3 22 6666666666666666666 11 555 66666 0 0 2 0 0 5 11 444 7 55
consensus : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------T----AAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
Reference ( family-910 ) : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------T----AAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33301 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------A----AAT----AA---GTACTT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACCAAA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33302 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-TCG------A----AAT----AA---GTA-TT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTT----A-------C------TG-TTTTA---GGGAGGGGTTATTATCAATAACC-AACAGAAGT-CTTTTCTTGA-TTCATATA-TTA-ATTAATCAAATACCTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
gi|33303 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAA-C-AAA------------TTT-C-TTTCATCTG------A----AAT----AA---GTA-TT--TT---AAAATAAAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-TCTTTTCCTCAAATTT----A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACA-AC-AGAAGT-CTTTTCTTGA-TTCATATA-TTGAATTAATCAAATACCTGCGCCTCAG-AGAAT--GGAGGATGCATCAAT
gi|33304 : AATTCCAA---ACAAG-TAAT---AGCTTTCACAAAA-A-GCTT--GCC-TGAC--TAAAC-AA-------------TTT-C-TT-CA-CTG------A----AAT----AA---GTACTT--TTTAAAA--TAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAGATCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA---GGGCGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATATTTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33305 : AATTCCGATGCGCAAG-TAAT---AGCTTTC-CAAAAAA-GCTT--GCC-TGGC--TAAAC-AAA------------TTT-
gi|33306 : AATTCCGATGCGCAAG-TAATCATAGCTTTC-CAAAA-A-GCTT--GCC-TGGC--TAAAC-
gi|33307 : ATTC------ACAAG-TTAT---AGCTTTC-TAAAA-C-GCTT--GCC-TGAC--TATAC-AAA------------TTT-C-TTTCA-CTG------T----ATA----AA---GTACTT--T-----A--CAA-ATGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TGAGTCGACT-------------------T----------------TT-TA-------
gi|33308 : ---ACAAG-TAAC---AGCTTTC-TAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-GTCCA-CTG------T----AAT----CA---CTACTTAATT---AA--TGA-TTGATGTT------TATCAG-ATGTACAT-GTA-CCCTGCA------TAGGTTGACT------------------AT----------------TTATA-------AATAACAAGTTTCCCTATAAATTA-T-GTTTCCTCAAATTTC---AAAGGTTTT------TT-TTTTA--GGGGAGGGGTTAT------CAGCC-AA-AGAA-----------------ATGT--TTA-ATCAATCCAATATATACAGCTCAGAAGTATGGGGAGGGTGTATAAAT
gi|33309 : agA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-ATG------T----A----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33310 : aA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-ATG------T----A----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33311 : aA---ACAAG-TAAC---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-TTCCA-TTG------T----AAT----CA---GTAC----TT---AA--T----TGATGTT------CATCA----T---AT-GTG-CCCTGCA------TAAGCTGACTTCTC--------------ATAAATAACAATAAGGCCTA-TA-------AATG-------------------A-T-GTTTCCTTAAAT------G-------CGGGGGGGG-GTCTA--AGGGAGGGGTTAC------CAAGC-AA-AGAAATGCTTTTTTAAA-TTCATTTC-TTG---TGATCCAATAAATACACCTTGGA
gi|33312 : aA---ACAAACTGAA---AGCTTTC-CAAAA-C-GCTT--GCA-TGAC--TAAAC-AAA------------TTT-CTTTTCA-CTG------TAAGCAAT----AA---GCAC----TT---AA--CAG-G-GATTTT------TATCAG-AGG---ATAGT--TTCTGCAAAACCGAAAGTCGACTTCTTAGGGGGAAAAACCAAT----------------TA-GA-------AATG-------------------A-T-ATTTTCTCAAATTTCGGGG-------T------TGTTTTTA--GGGGAGTGGTTAT------CAACC-AA-AGAAAT-GTTTTCTTAATTTCACTTA-AT---TTAATCAA
gi|33313 : ---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-ACA------------TTT-C-TTTCA-ATG------T----ATT----AC---GTG--G--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTACA------TAAGTCGACTTTTTATAGAGA-------AT----------------TA-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TATTAGGGGGGAGGAGGCATTATTGATAACC-AA-AGAAAT-GTTTTCTTAA-TTAAT----TTG-ATTAATCAAATAAATACGCCTCAGAAGCAT--GGGGGATGAATCA
gi|33314 : ---ACAAG-TAAC---AGTTTTC-AAAAA-A-GCTT--GCCATGCCCTTAAAT-AAATGTTAACAATTTTTT-T-TTTCA-CTGGGAAGTT----AAC----AA---GTAC----TT---AA--TTG-ACGATGTT------TATCAGAACA---TT-GCAGATCTGCA------TAAGTCAACC------------------GT----------------TT-TA-------
gi|33315 : CAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GTC-CGAC--TAAAC-AAA------------TTT-C-TTTCA-ATG------T----ATT----AAGTGGTACAT--TT---AA--TAC-GTGATATATACATGTATCAG-CCG---AT-GTA-CTCTAAA------TAAGTCGACT-------------------T----------------TT-TA-------
gi|33316 : CAAG-TAAT---AGCTTTC-CAAAA-T-GCTT--GCC-TGAC--TAAAC-AAA------------TTTAT-TTTCA-ATA------T----ATTTTAAAA---GTGGTT-------AA--TAA-GTGATATA------TATTAG-ATG---A----------------------GTCGACT-------------------T----------------TT-TATAG----AATG-------------------A-C-GTTTCCTCAAATTTC---A-------C------TG-ATTTA--G
gi|33317 : -A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCT-CTG------T----AAT----AAGATGTACTC--T
gi|33318 : C-AAA------------TTT-C-TTTCA-ATG------T----A--------------------T-------TAG-GTGGT-TA-------ATCAT-ACG---AT-GTA-CTCTACA------TAAGTCGACT------------------gcacttgtaagtcgactttttataagt
Alignments
lowQualScore : 111 111111111111 2222222222222222222222222222222 11 111111 55555555555555555555555555555555555555555555555555555555555555555555555 1111111111111111111 11111 22
lowQualScore : 2 000 2 444 2 2 4 66 2 77 4 222222222222 2 2 33 1111111111111111111111111111111 444 11 2 1 777777 2 444 33 2 1 0 555555 88888888888888888888888888888888888888888888888888888888888888888888888 7 44 6666666666666666666 88 555 22222 5 5 2 5 5 5 88 555 0 33
lowQualScore : . ... . ... . . . .. . .. . ............ . . .. ............................... ... .. . . ...... . ... .. . . . ...... ....................................................................... . .. ................... .. ... ..... . . . . . . .. ... . ..
lowQualScore : 7 000 5 444 5 4 7 55 4 99 4 111111111111 4 5 99 7777777777777777777777777777777 777 00 7 8 777777 7 777 55 7 1 2 000000 66666666666666666666666666666666666666666666666666666666666666666666666 3 22 6666666666666666666 11 555 66666 0 0 2 0 0 5 11 444 7 55
consensus : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------T----AAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
Reference ( family-910 ) : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------T----AAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33301 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------A----AAT----AA---GTACTT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACCAAA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33302 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-TCG------A----AAT----AA---GTA-TT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTT----A-------C------TG-TTTTA---GGGAGGGGTTATTATCAATAACC-AACAGAAGT-CTTTTCTTGA-TTCATATA-TTA-ATTAATCAAATACCTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
gi|33303 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAA-C-AAA------------TTT-C-TTTCATCTG------A----AAT----AA---GTA-TT--TT---AAAATAAAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-TCTTTTCCTCAAATTT----A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACA-AC-AGAAGT-CTTTTCTTGA-TTCATATA-TTGAATTAATCAAATACCTGCGCCTCAG-AGAAT--GGAGGATGCATCAAT
gi|33304 : AATTCCAA---ACAAG-TAAT---AGCTTTCACAAAA-A-GCTT--GCC-TGAC--TAAAC-AA-------------TTT-C-TT-CA-CTG------A----AAT----AA---GTACTT--TTTAAAA--TAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAGATCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA---GGGCGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATATTTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33305 : AATTCCGATGCGCAAG-TAAT---AGCTTTC-CAAAAAA-GCTT--GCC-TGGC--TAAAC-AAA------------TTT-
gi|33306 : AATTCCGATGCGCAAG-TAATCATAGCTTTC-CAAAA-A-GCTT--GCC-TGGC--TAAAC-
gi|33307 : ATTC------ACAAG-TTAT---AGCTTTC-TAAAA-C-GCTT--GCC-TGAC--TATAC-AAA------------TTT-C-TTTCA-CTG------T----ATA----AA---GTACTT--T-----A--CAA-ATGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TGAGTCGACT-------------------T----------------TT-TA-------
gi|33308 : ---ACAAG-TAAC---AGCTTTC-TAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-GTCCA-CTG------T----AAT----CA---CTACTTAATT---AA--TGA-TTGATGTT------TATCAG-ATGTACAT-GTA-CCCTGCA------TAGGTTGACT------------------AT----------------TTATA-------AATAACAAGTTTCCCTATAAATTA-T-GTTTCCTCAAATTTC---AAAGGTTTT------TT-TTTTA--GGGGAGGGGTTAT------CAGCC-AA-AGAA-----------------ATGT--TTA-ATCAATCCAATATATACAGCTCAGAAGTATGGGGAGGGTGTATAAAT
gi|33309 : agA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-ATG------T----A----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33310 : aA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-ATG------T----A----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33311 : aA---ACAAG-TAAC---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-TTCCA-TTG------T----AAT----CA---GTAC----TT---AA--T----TGATGTT------CATCA----T---AT-GTG-CCCTGCA------TAAGCTGACTTCTC--------------ATAAATAACAATAAGGCCTA-TA-------AATG-------------------A-T-GTTTCCTTAAAT------G-------CGGGGGGGG-GTCTA--AGGGAGGGGTTAC------CAAGC-AA-AGAAATGCTTTTTTAAA-TTCATTTC-TTG---TGATCCAATAAATACACCTTGGA
gi|33312 : aA---ACAAACTGAA---AGCTTTC-CAAAA-C-GCTT--GCA-TGAC--TAAAC-AAA------------TTT-CTTTTCA-CTG------TAAGCAAT----AA---GCAC----TT---AA--CAG-G-GATTTT------TATCAG-AGG---ATAGT--TTCTGCAAAACCGAAAGTCGACTTCTTAGGGGGAAAAACCAAT----------------TA-GA-------AATG-------------------A-T-ATTTTCTCAAATTTCGGGG-------T------TGTTTTTA--GGGGAGTGGTTAT------CAACC-AA-AGAAAT-GTTTTCTTAATTTCACTTA-AT---TTAATCAA
gi|33313 : ---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-ACA------------TTT-C-TTTCA-ATG------T----ATT----AC---GTG--G--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTACA------TAAGTCGACTTTTTATAGAGA-------AT----------------TA-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TATTAGGGGGGAGGAGGCATTATTGATAACC-AA-AGAAAT-GTTTTCTTAA-TTAAT----TTG-ATTAATCAAATAAATACGCCTCAGAAGCAT--GGGGGATGAATCA
gi|33314 : ---ACAAG-TAAC---AGTTTTC-AAAAA-A-GCTT--GCCATGCCCTTAAAT-AAATGTTAACAATTTTTT-T-TTTCA-CTGGGAAGTT----AAC----AA---GTAC----TT---AA--TTG-ACGATGTT------TATCAGAACA---TT-GCAGATCTGCA------TAAGTCAACC------------------GT----------------TT-TA-------
gi|33315 : CAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GTC-CGAC--TAAAC-AAA------------TTT-C-TTTCA-ATG------T----ATT----AAGTGGTACAT--TT---AA--TAC-GTGATATATACATGTATCAG-CCG---AT-GTA-CTCTAAA------TAAGTCGACT-------------------T----------------TT-TA-------
gi|33316 : CAAG-TAAT---AGCTTTC-CAAAA-T-GCTT--GCC-TGAC--TAAAC-AAA------------TTTAT-TTTCA-ATA------T----ATTTTAAAA---GTGGTT-------AA--TAA-GTGATATA------TATTAG-ATG---A----------------------GTCGACT-------------------T----------------TT-TATAG----AATG-------------------A-C-GTTTCCTCAAATTTC---A-------C------TG-ATTTA--G
gi|33317 : -A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCT-CTG------T----AAT----AAGATGTACTC--T
gi|33318 : C-AAA------------TTT-C-TTTCA-ATG------T----A--------------------T-------TAG-GTGGT-TA-------ATCAT-ACG---AT-GTA-CTCTACA------TAAGTCGACT------------------gcacttgtaagtcgactttttataagt
blockSeqs : A TGC C CAT A A A TA A CT T TGTTAACAATTT A T TC GGAAGTTAACAAGTAC TAA AA A T TACATG A TAC TA G T AAACCG ATTTATAAATAACAAGTTTCCCTATAAATT C CT CAAAGGTTTT TT GGG TATCA . C G G T A AT GAA AA
blockSeqs : A TGC . . . . A TA . T T . . . T TATTTTAAAAGTGGTT . AA . T . . . T . T AT TCTCATAAATAACAATAAGGCCTATAAATG C C GCGGGGGG T G TATCA . . G . . A A AA GG
blockSeqs : A . . . . . . . . T . . . . C TATTAAGTGGTACAT . . . T . . . T . T AT TCTTAGGGGGAAAAACCAATTAGAAATG . C CGGGGT T G TATCA . . G . . A A GA .
blockSeqs : G . . . . . . . . . . . . . C TAATAAGATGTACTC . . . T . . . T . T . TTTTATAGAGAATTATAAATG . G CAC T G TATTG . . A . . G C AA .
blockSeqs : G . . . . . . . . . . . . . C TAATCACTACTTAA . . . T . . . T . C . TTTTGTAGAGAATTAATA . G CAC T G . . . A . . T A GA .
blockSeqs : . . . . . . . . . . . . . . A TAAGCAATAAGCAC . . . T . . . T . C . TTTTGTAGAGAATTAATA . G CAC G A . . . A . . T . G
blockSeqs : . . . . . . . . . . . . . A AAATAAGTACTT . . . T . . . T . T . TTTTATAGAATG . G CAC T G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . T TATAAAGTACTT . . . C . . . T . T . ATTTTAAGTG . A CAC A G
blockSeqs : . . . . . . . . . . . . . C AAATAAGTATT . . . T . . . T . T . ATTTTAAGTG . G AC . .
blockSeqs : . . . . . . . . . . . . . A AAATAAGTATT . . . T . . . T . T . ATTTTAAGTG . G AC . .
blockSeqs : . . . . . . . . . . . . . C TAATCAGTAC . . . T . . . T . T .
blockSeqs : . . . . . . . . . . . . . A TATTACGTGG . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . A TAT . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C TAT . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . A TA
blockSeqs : . . . . . . . .
blockSeqs : .
blockSeqCons : TAATAAGTACTT******************* ** **
originalCons : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------T----AAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
finalCons : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTGTAATAAGTACTT-------------------TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
Alignments
lowQualScore : 111 111111111111 2222222222222222222222222222222 11 111111 55555555555555555555555555555555555555555555555555555555555555555555555 1111111111111111111 11111 22
lowQualScore : 2 000 2 444 2 2 4 66 2 77 4 222222222222 2 2 33 1111111111111111111111111111111 444 11 2 1 777777 2 444 33 2 1 0 555555 88888888888888888888888888888888888888888888888888888888888888888888888 7 44 6666666666666666666 88 555 22222 5 5 2 5 5 5 88 555 0 77
lowQualScore : . ... . ... . . . .. . .. . ............ . . .. ............................... ... .. . . ...... . ... .. . . . ...... ....................................................................... . .. ................... .. ... ..... . . . . . . .. ... . ..
lowQualScore : 7 000 5 444 5 4 7 55 4 99 4 111111111111 4 5 99 7777777777777777777777777777777 777 00 7 8 777777 7 777 55 7 1 2 000000 66666666666666666666666666666666666666666666666666666666666666666666666 3 22 6666666666666666666 11 555 66666 0 0 2 0 0 5 11 444 7 55
consensus : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------T----AAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
Reference ( family-910 ) : AATTCCGA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------T----AAT----AA---GTACTT--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTGCA------TAAGTCGACT------------------AT----------------TT-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
gi|33301 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-CTG------A----AAT----AA---GTACTT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACCAAA-AGAAGT-CTTTTCTTGA-TTCATATA-TTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33302 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCA-TCG------A----AAT----AA---GTA-TT--TT---AAAATAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTT----A-------C------TG-TTTTA---GGGAGGGGTTATTATCAATAACC-AACAGAAGT-CTTTTCTTGA-TTCATATA-TTA-ATTAATCAAATACCTGCGCCTCAGAAGAAT--GGAGGATGCATCAAT
gi|33303 : AATTCCAA---ACAAG-TAAT---AGCTTTC-CAAAA-AAGCTT--GCC-TGAC--TAA-C-AAA------------TTT-C-TTTCATCTG------A----AAT----AA---GTA-TT--TT---AAAATAAAGTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAAGTCGACT------------------AT----------------TT-TA-------AGTG-------------------A-TCTTTTCCTCAAATTT----A-------C------TG-TTTTA--GGGGAGGGGTTATTATCAATAACA-AC-AGAAGT-CTTTTCTTGA-TTCATATA-TTGAATTAATCAAATACCTGCGCCTCAG-AGAAT--GGAGGATGCATCAAT
gi|33304 : AATTCCAA---ACAAG-TAAT---AGCTTTCACAAAA-A-GCTT--GCC-TGAC--TAAAC-AA-------------TTT-C-TT-CA-CTG------A----AAT----AA---GTACTT--TTTAAAA--TAA-GTGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TAGATCGACT------------------AT----------------TT-TA-------AGTG-------------------A-T-CTTTCCTCAAATTTC---A-------C------TG-TTTTA---GGGCGGGGTTATTATCAATAACC-AA-AGAAGT-CTTTTCTTGA-TTCATATATTTG-ATTAATCAAATACCTGCGCCTCAGAAGAATAAGGAGGATGCATCAAT
gi|33305 : AATTCCGATGCGCAAG-TAAT---AGCTTTC-CAAAAAA-GCTT--GCC-TGGC--TAAAC-AAA------------TTT-
gi|33306 : AATTCCGATGCGCAAG-TAATCATAGCTTTC-CAAAA-A-GCTT--GCC-TGGC--TAAAC-
gi|33307 : ATTC------ACAAG-TTAT---AGCTTTC-TAAAA-C-GCTT--GCC-TGAC--TATAC-AAA------------TTT-C-TTTCA-CTG------T----ATA----AA---GTACTT--T-----A--CAA-ATGATATA------TATCAG-ACA---AT-GTA-CTCTACA------TGAGTCGACT-------------------T----------------TT-TA-------
gi|33308 : ---ACAAG-TAAC---AGCTTTC-TAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-GTCCA-CTG------T----AAT----CA---CTACTTAATT---AA--TGA-TTGATGTT------TATCAG-ATGTACAT-GTA-CCCTGCA------TAGGTTGACT------------------AT----------------TTATA-------AATAACAAGTTTCCCTATAAATTA-T-GTTTCCTCAAATTTC---AAAGGTTTT------TT-TTTTA--GGGGAGGGGTTAT------CAGCC-AA-AGAA-----------------ATGT--TTA-ATCAATCCAATATATACAGCTCAGAAGTATGGGGAGGGTGTATAAAT
gi|33309 : agA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-ATG------T----A----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33310 : aA---ACAAG-TAAT---AACTTTC-CAAAA-A-GCTTTAGCC-TGACT-TAAACTAAA------------TTG-C-TTTCA-ATG------T----A----------------T--TT---AA--TGA-G---TATA------TATCAG-ACG---A---TA-C-CTGCAAT----TTAGTCGACT------------------TT----------------TTGTAGAGAATTAATA-------------------ACC-GTTTACTCAAGATTC---A-------C------TG--TTTA--GCGGAGGGG
gi|33311 : aA---ACAAG-TAAC---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-AAA------------TCT-C-TTCCA-TTG------T----AAT----CA---GTAC----TT---AA--T----TGATGTT------CATCA----T---AT-GTG-CCCTGCA------TAAGCTGACTTCTC--------------ATAAATAACAATAAGGCCTA-TA-------AATG-------------------A-T-GTTTCCTTAAAT------G-------CGGGGGGGG-GTCTA--AGGGAGGGGTTAC------CAAGC-AA-AGAAATGCTTTTTTAAA-TTCATTTC-TTG---TGATCCAATAAATACACCTTGGA
gi|33312 : aA---ACAAACTGAA---AGCTTTC-CAAAA-C-GCTT--GCA-TGAC--TAAAC-AAA------------TTT-CTTTTCA-CTG------TAAGCAAT----AA---GCAC----TT---AA--CAG-G-GATTTT------TATCAG-AGG---ATAGT--TTCTGCAAAACCGAAAGTCGACTTCTTAGGGGGAAAAACCAAT----------------TA-GA-------AATG-------------------A-T-ATTTTCTCAAATTTCGGGG-------T------TGTTTTTA--GGGGAGTGGTTAT------CAACC-AA-AGAAAT-GTTTTCTTAATTTCACTTA-AT---TTAATCAA
gi|33313 : ---ACAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GCC-TGAC--TAAAC-ACA------------TTT-C-TTTCA-ATG------T----ATT----AC---GTG--G--TT---AA--TAA-GTGATATA------TATCAG-ACG---AT-GTA-CTCTACA------TAAGTCGACTTTTTATAGAGA-------AT----------------TA-TA-------AATG-------------------A-T-GTTTCCTCAAATTTC---A-------C------TG-TATTAGGGGGGAGGAGGCATTATTGATAACC-AA-AGAAAT-GTTTTCTTAA-TTAAT----TTG-ATTAATCAAATAAATACGCCTCAGAAGCAT--GGGGGATGAATCA
gi|33314 : ---ACAAG-TAAC---AGTTTTC-AAAAA-A-GCTT--GCCATGCCCTTAAAT-AAATGTTAACAATTTTTT-T-TTTCA-CTGGGAAGTT----AAC----AA---GTAC----TT---AA--TTG-ACGATGTT------TATCAGAACA---TT-GCAGATCTGCA------TAAGTCAACC------------------GT----------------TT-TA-------
gi|33315 : CAAG-TAAT---AGCTTTC-CAAAA-A-GCTT--GTC-CGAC--TAAAC-AAA------------TTT-C-TTTCA-ATG------T----ATT----AAGTGGTACAT--TT---AA--TAC-GTGATATATACATGTATCAG-CCG---AT-GTA-CTCTAAA------TAAGTCGACT-------------------T----------------TT-TA-------
gi|33316 : CAAG-TAAT---AGCTTTC-CAAAA-T-GCTT--GCC-TGAC--TAAAC-AAA------------TTTAT-TTTCA-ATA------T----ATTTTAAAA---GTGGTT-------AA--TAA-GTGATATA------TATTAG-ATG---A----------------------GTCGACT-------------------T----------------TT-TATAG----AATG-------------------A-C-GTTTCCTCAAATTTC---A-------C------TG-ATTTA--G
gi|33317 : -A-GCTT--GCC-TGAC--TAAAC-AAA------------TTT-C-TTTCT-CTG------T----AAT----AAGATGTACTC--T
gi|33318 : C-AAA------------TTT-C-TTTCA-ATG------T----A--------------------T-------TAG-GTGGT-TA-------ATCAT-ACG---AT-GTA-CTCTACA------TAAGTCGACT------------------gcacttgtaagtcgactttttataagt