lowQualScore : 1111111111111111 1111111111111111111 1111111111 11
lowQualScore : 0 99 33 22 666666 1 1 8888888888 9999999999999999 888888888888888 2 5555 11 2 0 2222 33 4444 66666 55555555 44444444 0 777 888 111 222 8888888888888888888 2 0 3 444 1111111111 11
lowQualScore : . .. .. .. ...... . . .......... ................ ............... . .... .. . . .... .. .... ..... ........ ........ . ... ... ... ... ................... . . . ... .......... ..
lowQualScore : 5 66 77 00 333333 3 3 7777777777 5555555555555555 444444444444444 1 7777 66 4 6 5555 66 8888 88888 22222222 22222222 3 777 444 999 111 7777777777777777777 4 5 4 111 4444444444 00
consensus : TCAAATCCGGAA-TC--TA--GTCATTCTC--NG--AAAATG-CCT-G----------AA-----A-N--------TT-C-------------AGTCA---T--TC-CCAAGA----AAT-TCCT----G----TT----TTG-A---TC---GGGCATTTC-C-GGGAA-A-G-C-C---T------A--AAAG---TTTCAGGCA-TTCTCGGAGAATGACTGA---A--AATC-AAAGCCTCAG--ATTTCC
Reference ( gi|3261 ) : TCAAATCCGGAA-CC--TA--GTCATTCTC--AG--AAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CCAAGA----AAT-TCCT----G----TT----TTG-A---TC---AGGCATTTC-C-AGGAA-A-G-C-C---T------A--AAAG---TTCCAGGCA-TTCTTGGAGAATGACTGA---A--AGTC-AAAGCCTCAG--ATTTCC
gi|3250 : TCAAATCCGGAA-TC--TA--GTCATTCTC--AG--GAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CCAAAA----AAT-TCCT----G----TT----TTG-G---TC----GGCATTTC-C-AGGAA-A-G-C-C---T------A--AAAG---TCTCAGGCA-TACTTGGAGTATGACTGA---A--AATC-AAAGCCTCAG--ATTTCC
gi|3252 : tatatattagagTCAAATTCGAAA-TC--TA--GTCATTCTC--AG--AAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CCAAGA----AAT-TTCT----G----TT----TTG-A---TT---GGGCATTTC-C-AGGAA-A-G-C-C---T----------AAG---TTTCGGACA-TTTTTGGAGAATGACTAA---A--AATC-AAAGCCTCAG--ATTTCC
gi|3258 : tatatgttacagTCAAATCCGGAA-TC--TA--GTCATTCTC--AG--GAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CTAAGA----AAT-TCCT----G----TT----TTG-A---TC---GGGCATTTC-C-AGGGA-T-G-C-C---T------A--AAAG---ATTCAGGCA-TTCTTAGAGAATGAGTGA---A--AATG-AAAGCTTCAG--ATTTTC
gi|3253 : ttacagTCAAATCCGGAA-TC--TA--GTCATTCTC--AG--GAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CTAAGA----AAT-TCCT----G----TT----TTG-A---TC---GGGCTTTTC-A-AGGGA-T-G-C-C---T------A--AAGG---TTTGGGGCA-TTCTTGGAAAGTGACGAA---A--AATG-AAGGCCTCAG--ATTTCC
gi|3259 : tatatgttacagTCAAATCCTGAA-TC--TA--GTCATTCTC--AG--GAAATG-CCT-A----------AA-----A-A--------AT-C-------------AGTTA---T--TC-CCAAGA----AAT-TCCT----G----GT----TTG-A---TC---GGGCGTTTC-C-AGGAA-A-G-C-C---T------A--AAAG---TTTCAGGCA-TTCTTGGAGAATTA-------------------CCTCAG--ATTTCC
gi|3254 : taccgTCAAATCCAGAA-TCCATA--GTTATTCTC--AT--GAAATG-CCT-G----------AA-----A-G--------TT-T-------------AGTCG---T--TC-CCAAGA----AAT-TCCT----A----TT----TTG-A---TG---GGACATTTC-T-AAGAA-A-G-C-T---TTAAAAAA--AAAA---T---AGCCA-TTTTCAGAGAATGACTGA---AATAGGC-AG----TCAGACATTTCC
gi|3251 : tatatgttgcagTCAAACCCTGAA-TC--TA--GTAATTCTC---------------T-G----------GA-----------------T-C-------------AGTCA---T--TC-CCAAGA----AAT-TCCT----G----TT----TTG-A---TC---GTGCATTCC-C-AGGTA-A-G-C-C---T------A----------------------TTGGCAAATGACTGA---A--AATC-AAAGCCTCAG--ATTCC
gi|3257 : tatatgttacagTCAAACCGGAAA-TC--TA--TTCATTCTC--AG--AAA-TG-CCT-G----------GA-----A-GATTCGTCCTT-CCCGGAATGCTGAAAGTCAGCTTCATC-CCAAGA----AAT-TCCT----G----TC----TTG-A---TC---GGGGATTT--C-AGGAC-A-G-C-C---T------A--A------------------CTTGGAGAATGACTAAATGA--ATTCGAAAGCTCCAG--ATTTCC
gi|3257 : atgttatacaacagTCGAATTC---A-TT--TA--GTCATTCTCCAAGTTAGGCTGTCCT-G----------AA-----A-T--------CC-C-------------CG--A---T------CAAGACAGGAAT-TTCTTGG-G----ATGAAGCTG-ACTTTC---AG-CATT-C-C-GGGAA-G-G-A-C----------G--AATC---TTCCAGGCA-TTTCT-GAGAATGA
gi|3255 : atgttatacaacagtcaaaccggaaatctatTCAAATCCGGAA-TC--TA--GTCATCCTC--AG--AAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGCCA---T--TC-CCAAGA----AAT-Taagctccagatttcc
gi|3260 : tatatgttacagCAAATCTGGAAATC--TGAGGTAATTCTC--CA--AGAATG-CCT-G----------AA-----ACT--------TT-T-------------AGGC----T--TT-CCTGGA----AAC-GCCC----G----AT----CAA-A---CC---AGGAATTTC-T-TGGGA-A---------T------A--ACTGATTTTTTAGGCA-TTTCCTGAGAATGACT
gi|3256 : caggC--TA--GGGATT-TC--GC--GAAATC-CCT-A----------AA-----A-C--------TTTC-------------AGGAAA--T--TC---ATGA----AAT-CCCT----G----TT----TCACA---T----AGGAATTT--C-ATGAA-A-T-CAC---T------A--AAAA---TTCTAGGGA-T--TTGGTGAA
gi|3252 : atatgttacagtaagactgtgtaa--TA--GTCATTCTC--CA--AAAATG-TCC-G----------AA-----A-C--------TT---------------AGGC----T--TT-CCTGGA----AAT-GCCC----A----AT----CAA-A---AC---AGAAATTTCTT-GGGAA-T-G-A-C---T---------GAAC---TTTCAGGCA-TTTTCTGAGAATGACT
gi|3262 : tatatgttacagtcaaattcgaaatct--TA--GTCATTCTC--CA--AAAATG-TCC-G----------AA-----A-C--------TT---------------AGGC----T--TT-CCTGGA----AAT-GCCC----A----AT----CAA-A---AC---AGAAATTTCTT-GGGAA-T-G-A-C---T---------GAAC---TTTCAGGCA-TTTTCTGAGAATGACTaaaatcaaagcctcagatttcc
gi|3263 : tt--TA--GTCATTCCT--AG--GAAATG-TCT-G----------ACTGCCTA-T--------TT-C-------------AGTCA---T--TC-TCTGAA----AAT-GGCT----A----TT----TTT-T---TTTTAAAGCTTTCT-T-AGAAA-T-GTC-C---C------ATCAAAA---T---AGGAATTTCTTGG-GAACGACTAA---A--
gi|3250 : A--GTCATACTC--CA--AGTATG-CCT-G----------AG-----A-C--------TT-TT------------AGGCT---T--TC-CTG-GA----AAT-GCC-----G----AC----CAA-A---AC---AGGAATTTT-T-TGGGA-ATG-A-C---T------G--AAC----TTTCAGGCA-TTTCCTGAGAATGACT
gi|3264 : tatatattagagtcaaatccggaatctA--GTCATTCTC--AG--AAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CCAAGA----AAT-TCCT----G----TT----TTG-A---TC---AGGCATTTC-C-AGGAA-A-G-C-C---T------A--AAAG---TTCCAGGCA-TTCTTGGAGAATGACTgaaaatcaaagcctcagatttcc
gi|3264 : A--GTCATTCTC--CA--AGAATG-CCT-G----------GA-----ACT--------TT-T-------------AGGC----T--TT-CCTGGA----AAT-GCCT----G----AT----CAA-A---AC---AGGAATTTCTT-GGGAA-T-G-A-C---T---------GAAC---TTTCAGGCA-TTTTCTGAGAATGACT
gi|3262 : A--GTCATTCTC--AG--AAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CCAAGA----AAT-TTCT----G----TT----TTG-A---TT---GGGCATTTC-C-AGGAA-A-G-C-C---T----------AAG---TTTCGGACA-TTTTTGGAGAATGACTAA---A--
gi|3265 : A--GTCATTCTC--AG--GAAATG-CCT-G----------AA-----A-G--------TT-C-------------AGTCA---T--TC-CTAAGA----AAT-TCCT----G----TT----TTG-A---TC---GGGCATTTC-C-AGGGA-T-G-C-C---T------A--AAAG---ATTCAGGCA-TTCTTAGAGAATGA
gi|3260 : A--GTCATTCTC--AG--GAAATG-CCT-A----------AA-----A-A--------AT-C-------------AGTTA---T--TC-CCAAGA----AAT-TCCT----G----GT----TTG-A---TC---GGGCGTTTC-C-AGGAA-A-G-C-C---T------A--AAAG---TTTCAGGCA-TTCTTGGAGAATTA-------------------CCTCAG--ATTTCC
gi|3266 : caggcaaatctA--GTCATTCTC--CA--AGAATG-CCT-G----------GA-----ACT--------TT-T-------------AGGC----T--TT-CCTGGA----AAT-GCCT----G----AT----CAA-A---AC---AGGAATTTCTT-GGGAA-T-G-A-C---T------G--AA
gi|3266 : ttcA--GTCATTCCC--AA--GAAATT-CCT-GTTTT------GA-----------------T-C-------------AGGCA---T--TT-CCAGGA----AAG--CCTAAAAG----TT----C--------C---AGGCATT
gi|3254 : ttcagtcattctccaagA--GTCATTCTC--TG--AAAATG-GCT-ATTTTTTTTTTAA-----A-G--------CT-----------------------T--TC-TTA-GA----AATGTCCC----A----TC----AAA-A---T----AGGAATTTC-TTGGGAA-C-G-A-C---T------A--AAC----TTTCAGGCA-TTTCATGAGAATAACTgaa
gi|3267 : tatatgttgcagtcaaatccagaatccatA--GTCATTCTC--CA--ACAATG-CCT-G-----------------------------T-C-------------ATTTG---T--TT-TCCAGA----AAT-gaaataggcagtcagacatttcc
gi|3253 : tgatctccc--GTCACTTTC--CA--AGAATG-CCC-C----------AA-----A-CC-------TT-T-------------AGGCA---T---C-CCTTGA----AAA-GCCC----G----AT----CAA-A---AC---AGGAATTTC-TTAGGAA-T-G-A-C---T------G--AAC----TTTCAGGCA-TTTCCTGAGAATGACTgaagatgagaatactca
gi|3259 : tatatgttacagtcaaatccggaatct--GTAATTCTC--CA--AGAATG-CCT-G----------AA-----ACT--------TT-T-------------AGGC----T--TT-CCTGGA----AAC-GCCC----G----AT----CAA-A---CC---AGGAATTTC-T-TGGGA-A---------T------A--ACTGATTTTTTAGGCA-TTTCCTGAGAATGACTgaaaaatgaaggcctcagatttcc
gi|3258 : taccgtcaaatcctgaatctTCATTCTC--TA--AGAATG-CCT-G----------AAT----C-T--------TT-T-------------AGGCA---T---C-CCTGGA----AAT-GCCC----G----AT----CAA-A---AC---AGGAATTTC-TTAGGAA-T-G-A-C---T------G--AAC----TTTCAGGCA-TTTCCTGAGAATGACTctcagatttcc
gi|3265 : ttacagtcaaatccggaatctTCATTCTC--TA--AGAATG-CCT-G----------AAT----C-T--------TT-T-------------AGGCA------TC-CCTGGA----AAT-GCCC----G----AT----CAA-A---AC---AGGAATTTCTT-AGGAA-T-G-A-C---T---------GAAC---TTTCAGGCA-TTTCCTGAGAATGACTgtgaaaatgaaagcttcagattttc
gi|3256 : AAATC-CCTAG----------AA-----T-T--------TT-T-------------AGTGA---T--TT-C-ATGA----AAT-TCCT----A----TG----TGA-A---AC---AGGGATTT--C-ATGAATT-T-C-C---T------G--AAAG---TTTTAGGGA-TT
gi|3250 : atatgttacagtaagactgtgtaactagggatttcgcga--------TT-C-------------AGTCA---T--ACTCCAAGT----A-T-GCCT----GAGACTT----TT-----------AGGC-TTTC-C-TGGAA-ATG-C-CGACC------A--AAA-------CAGGAA-TTTTTTGGGAATGACTGA---A--ggtgaa
gi|3266 : tatatattagagtcaaatccggaatctagtcattctcaggaaatgcctgaaag--------TT-C-------------AGTCA---T--TC-CCAAGA----AAT-TCCT----G----TT----TTG-A---TC---AGGCATTTC-C-AGGAA-A-G-C-C---T------A--AAAG---TTCCAGGCA-TTCTTGGAGAATGACTGA---A--aatcaaagcctcagatttcc
gi|3266 : --------TT-C-------------AGTCA---T--TCTCCAAG-----AAT-GCCT----GGAACTT----TT-----------AGGC-TTTC-C-TGGAA-ATG-C-C---TGATC--A--AAA-------CAGGAATTTCTTGG-GAATGACTGA---A--
gi|3263 : --------TT-T-------------AGTCG---T--TC-CCAAGA----AAT-TCCT----A----TT----TTG-A---TG---GGACATTTC-T-AAGAA-A-G-C-T---TTAAAAAA--AAAA---T---AGCCA-TTTTCAGAGAATGACTGA---AATAGGC-AG----TCAGACATTTCC
gi|3255 : tagtcattccta-A---TCT--AGTCATCCT-C-AGAAA-ATG-C-C---T------G--AAAG---TT-CAGCCA-TTC
gi|3267 : tatatgttacagtcaaatccggaCATTTC-T--GGAA-A-A-C----------------AAA---TGACAGGCA-TTGTTGGAGAATGACTGA---A--ccaagaaatt
gi|3255 : tgatctccATTTC-T-TGGGA-ATG-G-C---T------G--AAC----TTTCAGGCA-TTTTCTGAGGATGACTgatgagaatactca
gi|3255 : tatatgttacagtcaaatccggaatctTCTAGTCA-TCCTCAGAAAATGCCTGA---A--AGTt
Alignments
lowQualScore : 111111 111 11
lowQualScore : 55 666 55 1 2 1 33 5 333333 22 3 1 33 444 7 00
lowQualScore : .. ... .. . . . .. . ...... .. . . .. ... . ..
lowQualScore : 00 444 00 0 7 9 22 6 555555 88 7 4 99 666 3 00
consensus : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCT-GAAAGTTCAG--TCATTCCCAAGAAATTCCTGTTTTGATCGGGCATTTCCAGGAAAGCCT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
Reference ( family-909 ) : TCAAAT--CCGGAA---TC--TAGTCATTCTCNGAAAATGCCT-GAAANTTCAG--TCATTCCCAAGAAATTCCTGTTTTGATCGGGCATTTCCGGGAAAGCCT------AAAAGTTTCAGGCATTCTCGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3250 : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCT-GAAAGTTCAG--TCATTCCCAAAAAATTCCTGTTTTGGTC-GGCATTTCCAGGAAAGCCT------AAAAGTCTCAGGCATACTTGGAGTATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3251 : tatatattagagTCAAAC--CCTGAA---TC--TAGTAATTCTCTGGA--------------TCAG--TCATTCCCAAGAAATTCCTGTTTTGATCGTGCATTCCCAGGTAAGCCT------A----TT---GGCA---------AATGACTGAA--AATC--AAAGC-CTCAG--ATTCC
gi|3252 : tatatgttacagTCAAAT--TCGAAA---TC--TAGTCATTCTCAGAAAATGCCT-GAAAGTTCAG--TCATTCCCAAGAAATTTCTGTTTTGATTGGGCATTTCCAGGAAAGCCT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3253 : tatatgttacagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCT-GAAAGTTCAG--TCATTCCTAAGAAATTCCTGTTTTGATCGGGCTTTTCAAGGGATGCCT------AAAGGTTTGGGGCATTCTTGGAAAGTGACGAAA--AATG--AAGGC-CTCAG--ATTTCC
gi|3254 : tatatgttacagTCAAAT--CCAGAA---TCCATAGTTATTCTCATGAAATGCCT-GAAAGTTTAG--TCGTTCCCAAGAAATTCCTATTTTGATGGGACATTTCTAAGAAAGCTTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3255 : tatatgttgcagTCAAAT--CCGGAA---TC--TAGTCATCCTCAGAAAATGCCT-GAAAGTTCAG--CCATTCCCAAGAAATT
gi|3256 : tatatgttacagAAATCCCTAGAATTTTTAG--TGATTTC-ATGAAATTCCTATGTGAAACAGGGATTTCATGAATTTCCT------GAAAGTTTTAGGGATT-TCG
gi|3257 : atatgttacagtaagactgtgtaactagggatttcgTCAAAC--CGGAAA---TC--TATTCATTCTCAGAAAggtgaa
gi|3257 : atgttatacaacagAAATGCCTGGAAGATTC----GTCCTTCCCGGAA--TGC-T-GAAAGT-CAGCTTCAT-CCCAAGAAATTCCTGTCTTGATCGGGGATTT-CAGGACAGCCT------AA--------------CTTGGAGAATGACTAAATGAATTCGAAAGC-TCCAG--ATTTCCtgcctggaagattcgtccttcccggaatgctgaaagtcagcttcatcccaagaaattcctgtcttgatcggggatttcaggacagcctaacttggagaatgactaaatgaattcgaaagctccagatttcc
gi|3258 : atgttatacaacagtcaaaccggaaatctattcattctcagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCT-GAAAGTTCAG--TCATTCCTAAGAAATTCCTGTTTTGATCGGGCATTTCCAGGGATGCCT------AAAAGATTCAGGCATTCTTAGAGAATGAGTGAA--AATG--AAAGC-TTCAG--ATTTTC
gi|3259 : ttacagTCAAAT--CCTGAA---TC--TAGTCATTCTCAGGAAATGCCT-AAAAAATCAG--TTATTCCCAAGAAATTCCTGGTTTGATCGGGCGTTTCCAGGAAAGCCT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3260 : taccgAGTCATTCTCAGGAAATGCCT-AAAAAATCAG--TTATTCCCAAGAAATTCCTGGTTTGATCGGGCGTTTCCAGGAAAGCCT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3261 : caggcaaatctTCAAAT--CCGGAA---CC--TAGTCATTCTCAGAAAATGCCT-GAAAGTTCAG--TCATTCCCAAGAAATTCCTGTTTTGATCAGGCATTTCCAGGAAAGCCT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--AGTC--AAAGC-CTCAG--ATTTCC
gi|3262 : AGTCATTCTCAGAAAATGCCT-GAAAGTTCAG--TCATTCCCAAGAAATTTCTGTTTTGATTGGGCATTTCCAGGAAAGCCT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--
gi|3263 : TTTAG--TCGTTCCCAAGAAATTCCTATTTTGATGGGACATTTCTAAGAAAGCTTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3264 : tagtcattcctaAGTCATTCTCAGAAAATGCCT-GAAAGTTCAG--TCATTCCCAAGAAATTCCTGTTTTGATCAGGCATTTCCAGGAAAGCCT------AAAAGTTCCAGGCATTCTTGGAGAATGACT
gi|3265 : AGTCATTCTCAGGAAATGCCT-GAAAGTTCAG--TCATTCCTAAGAAATTCCTGTTTTGATCGGGCATTTCCAGGGATGCCT------AAAAGATTCAGGCATTCTTAGAGAATGA
gi|3266 : TTCAG--TCATTCCCAAGAAATTCCTGTTTTGATCAGGCATTTCCAGGAAAGCCT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--
gi|3267 : TGATCTCCCATTTCTGGAAAA--C---------AAATGACAGGCATTGTTGGAGAATGACTGAA--GAT
Alignments
lowQualScore : 111111 111 11
lowQualScore : 55 666 44 2 33 2 2 2 333333 33 1 33 444 7 00
lowQualScore : .. ... .. . .. . . . ...... .. . .. ... . ..
lowQualScore : 00 444 66 4 22 4 4 4 555555 66 4 99 666 3 00
consensus : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
Reference ( family-909 ) : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3250 : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAAAAATTCCTGTTTTG-GTC-GGCATTTCCAGGAAAGC-CT------AAAAGTCTCAGGCATACTTGGAGTATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3251 : tatatattagagTCAAAC--CCTGAA---TC--TAGTAATTCTCTGGA-------------T-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGTGCATTCCCAGGTAAGC-CT------A----------------TTGGCAAATGACTGAA--AATC--AAAGC-CTCAG--ATTCC
gi|3252 : tatatgttacagTCAAAT--TCGAAA---TC--TAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTTCTGTTTTG-ATTGGGCATTTCCAGGAAAGC-CT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3253 : tatatgttacagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCTTTTCAAGGGATGC-CT------AAAGGTTTGGGGCATTCTTGGAAAGTGACGAAA--AATG--AAGGC-CTCAG--ATTTCC
gi|3254 : tatatgttacagTCAAAT--CCAGAA---TCCATAGTTATTCTCATGAAATGCCTGAAAGTT-TAG--TCG-TTCCCAAGAAATTCCTATTTTG-ATGGGACATTTCTAAGAAAGC-TTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3255 : tatatgttgcagTCAAAT--CCGGAA---TC--TAGTCATCCTCAGAAAATGCCTGAAAGTT-CAG--CCA-TTCCCAAGAAATT
gi|3256 : tatatgttacagC--TAGGGATT-TCGCGAAATCCCTAAAACTTTCAG--GAAATTC--ATGAAATCCCTGTTTCACAT-AGGAATTT-CATGAAATCACT------AAAAATTCTAGGGAT--TTGGTGAA
gi|3257 : atatgttacagtaagactgtgtaaTCAAAC--CGGAAA---TC--TATTCATTCTCAG
gi|3257 : atgttatacaacagAAATGCCTGGAAGATTC----GTCCTTCCCGG--AATGC-TGAAAGT--CAGCTTCA-T-CCCAAGAAATTCCTGTCTTG-ATCGGGGATTT-CAGGACAGC-CT------AA--------------CTTGGAGAATGACTAAATGAATTCGAAAGC-TCCAG--ATTTCCaaatgcctggaagattcgtccttcccggaatgctgaaagtcagcttcatcccaagaaattcctgtcttgatcggggatttcaggacagcctaacttggagaatgactaaatgaattcgaaagctccagatttcc
gi|3258 : atgttatacaacagtcaaaccggaaatctattcattctcagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGGATGC-CT------AAAAGATTCAGGCATTCTTAGAGAATGAGTGAA--AATG--AAAGC-TTCAG--ATTTTC
gi|3259 : ttacagTCAAAT--CCTGAA---TC--TAGTCATTCTCAGGAAATGCCTAAAAAAT-CAG--TTA-TTCCCAAGAAATTCCTGGTTTG-ATCGGGCGTTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3260 : taccgAGTCATTCTCAGGAAATGCCTAAAAAAT-CAG--TTA-TTCCCAAGAAATTCCTGGTTTG-ATCGGGCGTTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3261 : caggcaaatctTCAAAT--CCGGAA---CC--TAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--AGTC--AAAGC-CTCAG--ATTTCC
gi|3262 : AGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTTCTGTTTTG-ATTGGGCATTTCCAGGAAAGC-CT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--
gi|3263 : TT-TAG--TCG-TTCCCAAGAAATTCCTATTTTG-ATGGGACATTTCTAAGAAAGC-TTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3264 : tagtcattcctaAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACT
gi|3265 : AGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGGATGC-CT------AAAAGATTCAGGCATTCTTAGAGAATGA
gi|3266 : TT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--
gi|3267 : TG-ATCTCCCATTTCT-GGAAAAC-----------AAATGACAGGCATTGTTGGAGAATGACTGAA--GAT
Alignments
lowQualScore : 111111 111 11
lowQualScore : 55 666 44 2 33 2 2 2 333333 33 1 33 444 7 00
lowQualScore : .. ... .. . .. . . . ...... .. . .. ... . ..
lowQualScore : 00 444 66 4 22 4 4 4 555555 66 4 99 666 3 00
consensus : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
Reference ( family-909 ) : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3250 : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAAAAATTCCTGTTTTG-GTC-GGCATTTCCAGGAAAGC-CT------AAAAGTCTCAGGCATACTTGGAGTATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3251 : tatatattagagTCAAAC--CCTGAA---TC--TAGTAATTCTCTGGA-------------T-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGTGCATTCCCAGGTAAGC-CT------A----------------TTGGCAAATGACTGAA--AATC--AAAGC-CTCAG--ATTCC
gi|3252 : tatatgttacagTCAAAT--TCGAAA---TC--TAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTTCTGTTTTG-ATTGGGCATTTCCAGGAAAGC-CT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3253 : tatatgttacagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCTTTTCAAGGGATGC-CT------AAAGGTTTGGGGCATTCTTGGAAAGTGACGAAA--AATG--AAGGC-CTCAG--ATTTCC
gi|3254 : tatatgttacagTCAAAT--CCAGAA---TCCATAGTTATTCTCATGAAATGCCTGAAAGTT-TAG--TCG-TTCCCAAGAAATTCCTATTTTG-ATGGGACATTTCTAAGAAAGC-TTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3255 : tatatgttgcagTCAAAT--CCGGAA---TC--TAGTCATCCTCAGAAAATGCCTGAAAGTT-CAG--CCA-TTCCCAAGAAATT
gi|3256 : tatatgttacagC--TAGGGATT-TCGCGAAATCCCTAAAACTTTCAG--GAAATTC--ATGAAATCCCTGTTTCACAT-AGGAATTT-CATGAAATCACT------AAAAATTCTAGGGAT--TTGGTGAA
gi|3257 : atatgttacagtaagactgtgtaaTCAAAC--CGGAAA---TC--TATTCATTCTCAG
gi|3257 : atgttatacaacagAAATGCCTGGAAGATTC----GTCCTTCCCGG--AATGC-TGAAAGT--CAGCTTCA-T-CCCAAGAAATTCCTGTCTTG-ATCGGGGATTT-CAGGACAGC-CT------AA--------------CTTGGAGAATGACTAAATGAATTCGAAAGC-TCCAG--ATTTCCaaatgcctggaagattcgtccttcccggaatgctgaaagtcagcttcatcccaagaaattcctgtcttgatcggggatttcaggacagcctaacttggagaatgactaaatgaattcgaaagctccagatttcc
gi|3258 : atgttatacaacagtcaaaccggaaatctattcattctcagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGGATGC-CT------AAAAGATTCAGGCATTCTTAGAGAATGAGTGAA--AATG--AAAGC-TTCAG--ATTTTC
gi|3259 : ttacagTCAAAT--CCTGAA---TC--TAGTCATTCTCAGGAAATGCCTAAAAAAT-CAG--TTA-TTCCCAAGAAATTCCTGGTTTG-ATCGGGCGTTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3260 : taccgAGTCATTCTCAGGAAATGCCTAAAAAAT-CAG--TTA-TTCCCAAGAAATTCCTGGTTTG-ATCGGGCGTTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3261 : caggcaaatctTCAAAT--CCGGAA---CC--TAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--AGTC--AAAGC-CTCAG--ATTTCC
gi|3262 : AGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTTCTGTTTTG-ATTGGGCATTTCCAGGAAAGC-CT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--
gi|3263 : TT-TAG--TCG-TTCCCAAGAAATTCCTATTTTG-ATGGGACATTTCTAAGAAAGC-TTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3264 : tagtcattcctaAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACT
gi|3265 : AGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGGATGC-CT------AAAAGATTCAGGCATTCTTAGAGAATGA
gi|3266 : TT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--
gi|3267 : TG-ATCTCCCATTTCT-GGAAAAC-----------AAATGACAGGCATTGTTGGAGAATGACTGAA--GAT
blockSeqs : GC GAT CA T CT A C A TAAAAA TT A TG TCG A AC
blockSeqs : . . . . . . . . TAAAAA TT A . C A AC
blockSeqs : . . . . . . . . . TC A . C . .
blockSeqs : . . . . . . . . . TT A . G . .
blockSeqs : . . . . . . . . . TT A . G . .
blockSeqs : . . . . . . . . . TT A . C . .
blockSeqs : . . . . . . . . . TC A . . . .
blockSeqs : . . . . . . . . . TT A . . . .
blockSeqs : . . . . . . . . . TC A . . . .
blockSeqs : . . . . . . . . . TT . . . . .
blockSeqs : . . . . . . . TC . .
blockSeqs : . . . . . . GA . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
finalCons : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
Alignments
lowQualScore : 111111 111 11
lowQualScore : 55 666 44 2 33 2 2 2 333333 33 1 33 444 7 00
lowQualScore : .. ... .. . .. . . . ...... .. . .. ... . ..
lowQualScore : 00 444 66 4 22 4 4 4 555555 66 4 99 666 3 00
consensus : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
Reference ( family-909 ) : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3250 : TCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAAAAATTCCTGTTTTG-GTC-GGCATTTCCAGGAAAGC-CT------AAAAGTCTCAGGCATACTTGGAGTATGACTGAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3251 : tatatattagagTCAAAC--CCTGAA---TC--TAGTAATTCTCTGGA-------------T-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCGTGCATTCCCAGGTAAGC-CT------A----------------TTGGCAAATGACTGAA--AATC--AAAGC-CTCAG--ATTCC
gi|3252 : tatatgttacagTCAAAT--TCGAAA---TC--TAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTTCTGTTTTG-ATTGGGCATTTCCAGGAAAGC-CT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--AATC--AAAGC-CTCAG--ATTTCC
gi|3253 : tatatgttacagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCTTTTCAAGGGATGC-CT------AAAGGTTTGGGGCATTCTTGGAAAGTGACGAAA--AATG--AAGGC-CTCAG--ATTTCC
gi|3254 : tatatgttacagTCAAAT--CCAGAA---TCCATAGTTATTCTCATGAAATGCCTGAAAGTT-TAG--TCG-TTCCCAAGAAATTCCTATTTTG-ATGGGACATTTCTAAGAAAGC-TTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3255 : tatatgttgcagTCAAAT--CCGGAA---TC--TAGTCATCCTCAGAAAATGCCTGAAAGTT-CAG--CCA-TTCCCAAGAAATT
gi|3256 : tatatgttacagC--TAGGGATT-TCGCGAAATCCCTAAAACTTTCAG--GAAATTC--ATGAAATCCCTGTTTCACAT-AGGAATTT-CATGAAATCACT------AAAAATTCTAGGGAT--TTGGTGAA
gi|3257 : atatgttacagtaagactgtgtaaTCAAAC--CGGAAA---TC--TATTCATTCTCAG
gi|3257 : atgttatacaacagAAATGCCTGGAAGATTC----GTCCTTCCCGG--AATGC-TGAAAGT--CAGCTTCA-T-CCCAAGAAATTCCTGTCTTG-ATCGGGGATTT-CAGGACAGC-CT------AA--------------CTTGGAGAATGACTAAATGAATTCGAAAGC-TCCAG--ATTTCCaaatgcctggaagattcgtccttcccggaatgctgaaagtcagcttcatcccaagaaattcctgtcttgatcggggatttcaggacagcctaacttggagaatgactaaatgaattcgaaagctccagatttcc
gi|3258 : atgttatacaacagtcaaaccggaaatctattcattctcagTCAAAT--CCGGAA---TC--TAGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGGATGC-CT------AAAAGATTCAGGCATTCTTAGAGAATGAGTGAA--AATG--AAAGC-TTCAG--ATTTTC
gi|3259 : ttacagTCAAAT--CCTGAA---TC--TAGTCATTCTCAGGAAATGCCTAAAAAAT-CAG--TTA-TTCCCAAGAAATTCCTGGTTTG-ATCGGGCGTTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3260 : taccgAGTCATTCTCAGGAAATGCCTAAAAAAT-CAG--TTA-TTCCCAAGAAATTCCTGGTTTG-ATCGGGCGTTTCCAGGAAAGC-CT------AAAAGTTTCAGGCATTCTTGGAGAATTA-----------------C-CTCAG--ATTTCC
gi|3261 : caggcaaatctTCAAAT--CCGGAA---CC--TAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--AGTC--AAAGC-CTCAG--ATTTCC
gi|3262 : AGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTTCTGTTTTG-ATTGGGCATTTCCAGGAAAGC-CT--------AAGTTTCGGACATTTTTGGAGAATGACTAAA--
gi|3263 : TT-TAG--TCG-TTCCCAAGAAATTCCTATTTTG-ATGGGACATTTCTAAGAAAGC-TTTAAAAAAAAAAT---AGCCATTTTCAGAGAATGACTG-A--AAT----AGGCAGTCAGACATTTCC
gi|3264 : tagtcattcctaAGTCATTCTCAGAAAATGCCTGAAAGTT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACT
gi|3265 : AGTCATTCTCAGGAAATGCCTGAAAGTT-CAG--TCA-TTCCTAAGAAATTCCTGTTTTG-ATCGGGCATTTCCAGGGATGC-CT------AAAAGATTCAGGCATTCTTAGAGAATGA
gi|3266 : TT-CAG--TCA-TTCCCAAGAAATTCCTGTTTTG-ATCAGGCATTTCCAGGAAAGC-CT------AAAAGTTCCAGGCATTCTTGGAGAATGACTGAA--
gi|3267 : TG-ATCTCCCATTTCT-GGAAAAC-----------AAATGACAGGCATTGTTGGAGAATGACTGAA--GAT