lowQualScore : 6 88 2 4 2 4 2 2 444 888 2 2 2 55 33 2
lowQualScore : . .. . . . . . . ... ... . . . .. .. .
lowQualScore : 0 99 5 2 5 8 4 4 111 888 4 4 4 66 22 5
consensus : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
Reference ( gi|121940 ) : TTGAAGA-T-TTGAACATTAT-CATCAACCTTGTTG-C-GACTG---ACTTTGC--CCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121939 : TCGAAGG-T-TTGAACATTAT-TATCAACCTTGCTT-C-GATTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121941 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--GG----TTGG-TGATCAGT
gi|121944 : TCGAAGG-T-TTGAACATAAT-CATCAACCTTGCTG-C-GACTG---ATTTTG---CTTTG-TG-AC-AATTAAC--GA--ATTT-G-TGATCAGT
gi|121942 : TCGAAGG-T-TTGAGCATTAT-CATCAACCTTGCTGCC-GACTG---AC-TTGCTTTCTTG-TG-AC-AATTAACG-GA--ATTTGG-TGATCAGT
gi|121947 : TCGAAGG-TATTGAACAT-AT-CATCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TGAAC-AAGTAAT--GA--ATTTGGTTGATCAGT
gi|121950 : TCGAAGGGT-TTCAACATTAT-CATCAACCTTGTTG-C-GATTG---ACTTCGC--TCTTG-TG-AC-AATTAAC--GA--ATTT
gi|121948 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTT-----------TA-AC-AATTAAA--GA--ATTTGG-TGATCAGT
gi|121943 : TCGAAGG-T-T--GACATTATTCATCAACCTTGCTG-CCGACTG---ACTTTGC--TCTT--TG-AC-AATTAACCGGA--ATTTGG-TGATCAGT
gi|121952 : TCGAGGT-T-TTGAACATGAT-CATCGACCTTGT-----GACTG---ATTTTGC--TCTTG-CG-AT-CATCCAC--GA----CTGG-CGAT-AGT
gi|121953 : TCGAAGA-C-TTGAACATGAT-CATCAA---------------G---ATTTTGC--TCT---TG-AT-GATTCAC--GA--CGTTGG-TGTTCAGT
gi|121954 : GAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--G-----TTGG-TGA-CAGT
gi|121955 : cAAGG-T-TCGAACATCA------AAACCTGCTG-C-GACTGGTGACTTTGC--TCTTG-TG-CCCAATTAAC--GA--ATTTGG-TGATTA
gi|121951 : AAGT-T-TTGAACATGAT-CATCGATCTTGCTG-C-GACTG---ATTTTGT--TCTTACTA-AC--ATCCAC--GACGATT--G-CGATTAGT
gi|121945 : tctAGG-T-TCGAAGAATAT-CACCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--AA--ATTTGG-TGATCAGT
gi|121946 : tcgcAGG-T-TCGAACAT-------CAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATTAGT
gi|121949 : tcgcAGG-T-TTGAAATTTAT-CATCAACCCTGCAG-C-GACTG---ACTTTGC--TCTTT-TG-AC-AATCAAC--GA--ATTTGG-TCATCAGT
gi|121956 : tcgcACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-CATCAAC--GA--ATTTAG-TGAT
Alignments
lowQualScore : 2 2 3 2 2 2 333 33 2 2 2 55 33 2
lowQualScore : . . . . . . ... .. . . . .. .. .
lowQualScore : 4 4 4 4 2 2 999 11 2 2 2 33 11 4
consensus : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
Reference ( family-906 ) : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121939 : TCGAAGG-T-TTGAACATTAT-TATCAACCTTGCTT-C-GATTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121940 : TTGAAGA-T-TTGAACATTAT-CATCAACCTTGTTG-C-GACTG---ACTTTGC--CCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121941 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--GG----TTGG-TGATCAGT
gi|121942 : TCGAAGG-T-TTGAGCATTAT-CATCAACCTTGCTGCC-GACTG---AC-TTGCTTTCTTG-TG-AC-AATTAACG-GA--ATTTGG-TGATCAGT
gi|121943 : TCGAAGG-T-T--GACATTATTCATCAACCTTGCTG-CCGACTG---ACTTTGC--TCTT--TG-AC-AATTAACCGGA--ATTTGG-TGATCAGT
gi|121944 : TCGAAGG-T-TTGAACATAAT-CATCAACCTTGCTG-C-GACTG---ATTTTGC--T-TTG-TG-AC-AATTAAC--GA--ATTT-G-TGATCAGT
gi|121945 : TCGCAGG-T-TCGAAGAATAT-CACCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--AA--ATTTGG-TGATCAGT
gi|121946 : TCGCAGG-T-TCGAACAT-------CAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATTAGT
gi|121947 : TCGAAGG-TATTGAACAT-AT-CATCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TGAAC-AAGTAAT--GA--ATTTGGTTGATCAGT
gi|121948 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTT-----------TA-AC-AATTAAA--GA--ATTTGG-TGATCAGT
gi|121949 : TCGCAGG-T-TTGAAATTTAT-CATCAACCCTGCAG-C-GACTG---ACTTTGC--TCTTT-TG-AC-AATCAAC--GA--ATTTGG-TCATCAGT
gi|121950 : TCGAAGGGT-TTCAACATTAT-CATCAACCTTGTTG-C-GATTG---ACTTCGC--TCTTG-TG-AC-AATTAAC--GA--ATTT
gi|121951 : TCTAAGT-T-TTGAACATGAT-CATCGATCTTGCTG-C-GACTG---ATTTTGT--TCTTACTA-AC--ATCCAC--GACGATT--G-CGATTAGT
gi|121952 : TCGAGGT-T-TTGAACATGAT-CATCGACCT---TG-T-GACTG---ATTTTGC--TCTTG-CG-AT-CATCCAC--GA----CTGG-CGAT-AGT
gi|121953 : TCGAAGA-C-TTGAACATGAT-CATCAA---------------G---ATTTTGC--TCT---TG-AT-GATTCAC--GA--CGTTGG-TGTTCAGT
gi|121954 : CGAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--G-----TTGG-TGA-CAGT
gi|121955 : AAGG-T-TCGAACATCA------AAACCTGCTG-C-GACTGGTGACTTTGC--TCTTG-TG-CCCAATTAAC--GA--ATTTGG-TGATTA
gi|121956 : ACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-CATCAAC--GA--ATTTAG-TGAT
Alignments
lowQualScore : 2 2 3 2 2 2 333 33 2 2 2 55 33 2
lowQualScore : . . . . . . ... .. . . . .. .. .
lowQualScore : 4 4 4 4 2 2 999 11 2 2 2 33 11 4
consensus : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
Reference ( family-906 ) : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121939 : TCGAAGG-T-TTGAACATTAT-TATCAACCTTGCTT-C-GATTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121940 : TTGAAGA-T-TTGAACATTAT-CATCAACCTTGTTG-C-GACTG---ACTTTGC--CCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121941 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--GG----TTGG-TGATCAGT
gi|121942 : TCGAAGG-T-TTGAGCATTAT-CATCAACCTTGCTGCC-GACTG---AC-TTGCTTTCTTG-TG-AC-AATTAACG-GA--ATTTGG-TGATCAGT
gi|121943 : TCGAAGG-T-T--GACATTATTCATCAACCTTGCTG-CCGACTG---ACTTTGC--TCTT--TG-AC-AATTAACCGGA--ATTTGG-TGATCAGT
gi|121944 : TCGAAGG-T-TTGAACATAAT-CATCAACCTTGCTG-C-GACTG---ATTTTGC--T-TTG-TG-AC-AATTAAC--GA--ATTT-G-TGATCAGT
gi|121945 : TCGCAGG-T-TCGAAGAATAT-CACCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--AA--ATTTGG-TGATCAGT
gi|121946 : TCGCAGG-T-TCGAACAT-------CAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATTAGT
gi|121947 : TCGAAGG-TATTGAACAT-AT-CATCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TGAAC-AAGTAAT--GA--ATTTGGTTGATCAGT
gi|121948 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTT-----------TA-AC-AATTAAA--GA--ATTTGG-TGATCAGT
gi|121949 : TCGCAGG-T-TTGAAATTTAT-CATCAACCCTGCAG-C-GACTG---ACTTTGC--TCTTT-TG-AC-AATCAAC--GA--ATTTGG-TCATCAGT
gi|121950 : TCGAAGGGT-TTCAACATTAT-CATCAACCTTGTTG-C-GATTG---ACTTCGC--TCTTG-TG-AC-AATTAAC--GA--ATTT
gi|121951 : TCTAAGT-T-TTGAACATGAT-CATCGATCTTGCTG-C-GACTG---ATTTTGT--TCTTACTA-AC--ATCCAC--GACGATT--G-CGATTAGT
gi|121952 : TCGAGGT-T-TTGAACATGAT-CATCGACCT---TG-T-GACTG---ATTTTGC--TCTTG-CG-AT-CATCCAC--GA----CTGG-CGAT-AGT
gi|121953 : TCGAAGA-C-TTGAACATGAT-CATCAA---------------G---ATTTTGC--TCT---TG-AT-GATTCAC--GA--CGTTGG-TGTTCAGT
gi|121954 : CGAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--G-----TTGG-TGA-CAGT
gi|121955 : AAGG-T-TCGAACATCA------AAACCTGCTG-C-GACTGGTGACTTTGC--TCTTG-TG-CCCAATTAAC--GA--ATTTGG-TGATTA
gi|121956 : ACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-CATCAAC--GA--ATTTAG-TGAT
blockSeqs : G A T T C C GTG TT C A C CG CG T
blockSeqs : . . T . . . . . . . . G . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . .
blockSeqs : . . T . . . . . . . . . . .
blockSeqs : . . C . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
finalCons : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
Alignments
lowQualScore : 2 2 3 2 2 2 333 33 2 2 2 55 33 2
lowQualScore : . . . . . . ... .. . . . .. .. .
lowQualScore : 4 4 4 4 2 2 999 11 2 2 2 33 11 4
consensus : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
Reference ( family-906 ) : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121939 : TCGAAGG-T-TTGAACATTAT-TATCAACCTTGCTT-C-GATTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121940 : TTGAAGA-T-TTGAACATTAT-CATCAACCTTGTTG-C-GACTG---ACTTTGC--CCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATCAGT
gi|121941 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--GG----TTGG-TGATCAGT
gi|121942 : TCGAAGG-T-TTGAGCATTAT-CATCAACCTTGCTGCC-GACTG---AC-TTGCTTTCTTG-TG-AC-AATTAACG-GA--ATTTGG-TGATCAGT
gi|121943 : TCGAAGG-T-T--GACATTATTCATCAACCTTGCTG-CCGACTG---ACTTTGC--TCTT--TG-AC-AATTAACCGGA--ATTTGG-TGATCAGT
gi|121944 : TCGAAGG-T-TTGAACATAAT-CATCAACCTTGCTG-C-GACTG---ATTTTGC--T-TTG-TG-AC-AATTAAC--GA--ATTT-G-TGATCAGT
gi|121945 : TCGCAGG-T-TCGAAGAATAT-CACCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--AA--ATTTGG-TGATCAGT
gi|121946 : TCGCAGG-T-TCGAACAT-------CAACCTTGCTG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AATTAAC--GA--ATTTGG-TGATTAGT
gi|121947 : TCGAAGG-TATTGAACAT-AT-CATCAACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TGAAC-AAGTAAT--GA--ATTTGGTTGATCAGT
gi|121948 : TCGAAGG-T-TTGAACATTAT-CATCAACCTTGCTG-C-GACTG---ACTT-----------TA-AC-AATTAAA--GA--ATTTGG-TGATCAGT
gi|121949 : TCGCAGG-T-TTGAAATTTAT-CATCAACCCTGCAG-C-GACTG---ACTTTGC--TCTTT-TG-AC-AATCAAC--GA--ATTTGG-TCATCAGT
gi|121950 : TCGAAGGGT-TTCAACATTAT-CATCAACCTTGTTG-C-GATTG---ACTTCGC--TCTTG-TG-AC-AATTAAC--GA--ATTT
gi|121951 : TCTAAGT-T-TTGAACATGAT-CATCGATCTTGCTG-C-GACTG---ATTTTGT--TCTTACTA-AC--ATCCAC--GACGATT--G-CGATTAGT
gi|121952 : TCGAGGT-T-TTGAACATGAT-CATCGACCT---TG-T-GACTG---ATTTTGC--TCTTG-CG-AT-CATCCAC--GA----CTGG-CGAT-AGT
gi|121953 : TCGAAGA-C-TTGAACATGAT-CATCAA---------------G---ATTTTGC--TCT---TG-AT-GATTCAC--GA--CGTTGG-TGTTCAGT
gi|121954 : CGAAGG-T-TTGAACATTAT-CATCAACCTTGCCG-C-GACTG---ACTTTGC--TCTTG-TG-AC-AGTTAAC--G-----TTGG-TGA-CAGT
gi|121955 : AAGG-T-TCGAACATCA------AAACCTGCTG-C-GACTGGTGACTTTGC--TCTTG-TG-CCCAATTAAC--GA--ATTTGG-TGATTA
gi|121956 : ACCTTGCTG-T-GACTG---ACTTTGC--TCTTG-TG-AC-CATCAAC--GA--ATTTAG-TGAT