lowQualScore                  :     1                                                                         111                                      11                                
lowQualScore                  :     7    55  444        5555     8888 2   2        2   2 2     2  2   2       999     2 4 2 4      55  2  55 2 55555   11  33           2 55   2   2 2   
lowQualScore                  :     .    ..  ...        ....     .... .   .        .   . .     .  .   .       ...     . . . .      ..  .  .. . .....   ..  ..           . ..   .   . .   
lowQualScore                  :     0    99  444        6666     8888 5   5        5   4 4     4  4   4       777     4 7 4 7      66  4  66 4 99999   22  22           4 66   4   4 4   
consensus                     :  GTTTTCTA--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATATTTT--CCAACT-G-A-C-GACAAG--TA-CA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
Reference ( gi|107317 )       :  GTTATCTA--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATATTTT--GCAACT-G-A-C-GACAAG--TA-CA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107321                     :  GTTTTCTA--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-ATAGGT--CT-GTT-ATACTTT--TCAACT-G-A-C-GACAAG--TA-CA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107318                     :  GTTTTCTA--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTA-ATATTTT--CCAACT-G-A-C-GACAAG--TA-TAT-T-T-----TGT--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107320                     :  GTTTTCTA--CA---GAAAACTT-AT-ATTAA----T-GAA--ACAGAAA-GAC-A-AAGTA-CT-GTT-ATATTTT--CCAACT-G-A-C-GACAAG--TA-CA--A-T-----TGC--TT--TGT-TCTTTTC-A--ATA-TAA-A-ATA
gi|107322                     :  GTTTTCTA--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAAGGAC-A-AAGTA-CT-GTTAATATTTT--CCAACT-GAA-C-TACAAGGCTA-TA--T-T-----TG---TT--TG-CTCTTTTC-A--ATA-CAA-A-ATA
gi|107323                     :  GTTTTCT---CA---GAAAACTA-A--ATTAA----T-GAA-GACAGAAA-GAC-A-A-GTA-TT-GT--ATATTTT--CCAACT-G-A-C-GACAAG--TA-AA--T-T-----TGC--TT--TGT-TCTTTTC-AT-AT--CAA-A-ATA
gi|107326                     :  GTTTTCTAAATA---GAAAACTG-AT-ATAAA----T-GAA-GACAGAAA-GAC---AAGTATCTGGTT-ATATTTTCCCCAACT-G-A-C-GAC-AG--T--CA--T-T-----TGC--TT--TGTCTCTTTTC----ATG-CAA-A-
gi|107325                     :  GTTTTCTA--TA---GAAA-CTGGAT-AT-AA----T-GAAAGACAGAAA-GAC-A-AAGTA-CT-GTT-TTATATT--TCCACT-G-A-C-AACAAG---A-CA--T-T-----TGC--TT--TGTCTCTTATC-A--ATA-CAA-ATATA
gi|107328                     :  GTTTTCTA--TA---GAAAACTG-AT-ATTAA----T-GA------------AC-A-AAG----T-GTT-ATATTTT--CCAACTGG-A-C-GACAAG--TA-CATTT-T-----TGCGGTT--TGTCTCTTTTC----ATG-CAAGA-ATA
gi|107329                     :   TTTTCTA--CATTAAGAAACTT--T-ATTAA----TTGAA-GACAGAAA-G-C-A-AAGAA-CT-GTT-ATATTTT---CAACT-G-A-CGGACAAG--T--TA--T-T-----TGTG-TT--TGTTCTTTTTC-A--ATACCAA-A-ATA
gi|107319                     :      TCTA--TA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATATTTT--CCAACT-G-A-C-GACAAC--TA-CA--T-T-----TGC--TT--TGTCTC-TTTC-A--ATG-CAA-A-ATA
gi|107330                     :  gcttTCTA--CA---GAAAACTG-ATCATTAA----T-GAA-GACAGAA--GAC-A-A-GTA-CT-GAT-ATATTTT--CCA-CT-G-AAC-GACAAG--TA-CA--T-T-----TGCTGTT--TGTCTCTTTTC-ACCATA-CAA-A-
gi|107331                     :    ttTCTT--CA---GAAAACTG-AT-ATTAAATAAT-GAA-GACAGAAA-GAC-A-AAGTT-CT-GTT-TTATGTT--CCAACT-GTA-C-GAGAAG--TA-CA--TGTACATGTGC--TT--TGTCTCTTATA-A--ATA-CAA-A-ATA
gi|107332                     :    ttTCTAA-TA---GAAAATTG-TT-ATTAA----T---A-GACAGAAA-GAT-A-AAGTA-CT-GTT-ATATTT----CAA-T-G-A-CGGACAAGT-TA-CA--T-T-----TTCT-TT--TGTCTCTTTTCGA--ATA-CAA-A-ATA
gi|107333                     :     ttCTA--CA---GACAACTG-TC-ATTAAAC--T-GAA-CAC-GAAA-GAC-A-AATCA-TT-ATC-ATATTTT--TCAACT-C-A-C-GACAAG--TA-TA--T-T-----TGT--TTCCTGT-TCTTTTC-A--A-A-CAA-A-ATA
gi|107324                     :         A--CA---GAAAACCT-AA-ATTAA----T-GA--GACAGAAA-GAC-A-ATGT--TT-GTT-ATATTAT--CCAACT-G-A-C-GACAAG--TAACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-
gi|107327                     : gttttccta--CA---GAAA-CTG-GTTATTAA------GAA-AACAGAAA-GACAA-AAGTA-CT-TGT-ATATTTT--CCAACT-G-A---GACAAG--TA-TA--G-T-----TGT--TT--TGTCTCTGTCC-A--ATA-CAA-A-ATA
gi|107334                     :                                              gttttcatAC-A-AAGTA-CT-GTT-ATATTTT--CCAACT-G-A-T-GATAAA--TA-CA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATG-CAA-A-





Alignments
lowQualScore                  :                                                                                                                          11                                
lowQualScore                  :        55555  444        33 4     8888 2   2        2   2 2     2  2   2    2   33      2 4 2 4      55 2   55 2 55555   00  33           4444   4   2 2   
lowQualScore                  :        .....  ...        .. .     .... .   .        .   . .     .  .   .    .   ..      . . . .      .. .   .. . .....   ..  ..           ....   .   . .   
lowQualScore                  :        88888  111        22 7     2222 4   4        4   2 2     2  2   2    2   11      2 4 2 4      33 2   33 2 66666   66  11           4444   4   2 2   
consensus                     : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
Reference ( family-900 )      : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107317                     : GTTATCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--GCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107318                     : GTTTTCT--A--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTA-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ATAT-T-T-----TGT--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107319                     : GCTTTCT--A--TA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAC--T-ACA--T-T-----TGC--TT--TGTCTC-TTTC-A--ATG-CAA-A-ATA
gi|107320                     : GTTTTCT--A--CA---GAAAACTT-AT-ATTAA----T-GAA--ACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--A-T-----TGC--TT--TGT-TCTTTTC-A--ATA-TAA-A-ATA
gi|107321                     : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-ATAGGT--CT-GTT-ATAC-TTT--TCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107322                     : GTTTTCT--A--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAAGGAC-A-AAGTA-CT-GTTAATAT-TTT--CCAACT-GAA-C-TACAAGGCT-ATA--T-T-----TG---TT--TG-CTCTTTTC-A--ATA-CAA-A-ATA
gi|107323                     : GTTTTCT-----CA---GAAAACTA-A--ATTAA----T-GAA-GACAGAAA-GAC-A-A-GTA-TT-GT--ATAT-TTT--CCAACT-G-A-C-GACAAG--T-AAA--T-T-----TGC--TT--TGT-TCTTTTC----ATATCAA-A-ATA
gi|107324                     : GTTTTCCTAA--CA---GAAAACCT-AA-ATTAA----T-GA--GACAGAAA-GAC-A-ATGT--TT-GTT-ATAT-TAT--CCAACT-G-A-C-GACAAG--TAACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-
gi|107325                     : GTTTTCT--A--TA---GAAA-CTGGAT-AT-AA----T-GAAAGACAGAAA-GAC-A-AAGTA-CT-GTT-TTATATTT--CC-ACT-G-A-C-AACAAG----ACA--T-T-----TGC--TT--TGTCTCTTATC-A--ATA-CAA-ATATA
gi|107326                     : GTTTTCT--AAATA---GAAAACTG-AT-ATAAA----T-GAA-GACAGAAA-GAC---AAGTATCTGGTT-ATAT-TTTCCCCAACT-G-A-C-GAC-AG--T--CA--T-T-----TGC--TT--TGTCTCTTTTC----ATG-CAA-A-
gi|107327                     : GTTTTCA--T--CA---GAAA-CTG-GTTATTAA------GAA-AACAGAAA-GACAA-AAGTA-CT-TGT-ATAT-TTT--CCAACT-G-A---GACAAG--T-ATA--G-T-----TGT--TT--TGTCTCTGTCC-A--ATA-CAA-A-ATA
gi|107328                     : GTTTTCT--A--TA---GAAAACTG-AT-ATTAA----T-GA------------AC-A-AAG----T-GTT-ATAT-TTT--CCAACTGG-A-C-GACAAG--T-ACATTT-T-----TGCGGTT--TGTCTCTTTTC----ATG-CAAGA-ATA
gi|107329                     :  TTTTCT--A--CATTAAGAAACTT--T-ATTAA----TTGAA-GACAGAAA-G-C-A-AAGAA-CT-GTT-ATAT-TTT---CAACT-G-A-CGGACAAG--T--TA--T-T-----TGTG-TT--TGTTCTTTTTC-A--ATACCAA-A-ATA
gi|107330                     :   TTTCT--A--CA---GAAAACTG-ATCATTAA----T-GAA-GACAGAA--GAC-A-A-GTA-CT-GAT-ATAT-TTT--CCA-CT-G-AAC-GACAAG--T-ACA--T-T-----TGCTGTT--TGTCTCTTTTC-ACCATA-CAA-A-
gi|107331                     :   TTTCT--T--CA---GAAAACTG-AT-ATTAAATAAT-GAA-GACAGAAA-GAC-A-AAGTT-CT-GTT-TTAT-GTT--CCAACT-GTA-C-GAGAAG--T-ACA--TGTACATGTGC--TT--TGTCTCTTATA-A--ATA-CAA-A-ATA
gi|107332                     :   TTTCT--AA-TA---GAAAATTG-TT-ATTAA----T---A-GACAGAAA-GAT-A-AAGTA-CT-GTT-ATAT-TT----CAA-T-G-A-CGGACAAGT-T-ACA--T-T-----TTCT-TT--TGTCTCTTTTCGA--ATA-CAA-A-ATA
gi|107333                     :      CT--A--CA---GACAACTG-TC-ATTAAAC--T-GAA-CAC-GAAA-GAC-A-AATCA-TT-ATC-ATAT-TTT--TCAACT-C-A-C-GACAAG--T-ATA--T-T-----TGT--TTCCTGT-TCTTTTC-A--A-A-CAA-A-ATA
gi|107334                     :                                                       AC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-T-GATAAA--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATG-CAA-A-





Alignments
lowQualScore                  :                                                                                                                          11                                
lowQualScore                  :        55555  444        33 4     8888 2   2        2   2 2     2  2   2    2   33      2 4 2 4      55 2   55 2 55555   00  33           4444   4   2 2   
lowQualScore                  :        .....  ...        .. .     .... .   .        .   . .     .  .   .    .   ..      . . . .      .. .   .. . .....   ..  ..           ....   .   . .   
lowQualScore                  :        88888  111        22 7     2222 4   4        4   2 2     2  2   2    2   11      2 4 2 4      33 2   33 2 66666   66  11           4444   4   2 2   
consensus                     : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
Reference ( family-900 )      : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107317                     : GTTATCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--GCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107318                     : GTTTTCT--A--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTA-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ATAT-T-T-----TGT--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107319                     : GCTTTCT--A--TA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAC--T-ACA--T-T-----TGC--TT--TGTCTC-TTTC-A--ATG-CAA-A-ATA
gi|107320                     : GTTTTCT--A--CA---GAAAACTT-AT-ATTAA----T-GAA--ACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--A-T-----TGC--TT--TGT-TCTTTTC-A--ATA-TAA-A-ATA
gi|107321                     : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-ATAGGT--CT-GTT-ATAC-TTT--TCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107322                     : GTTTTCT--A--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAAGGAC-A-AAGTA-CT-GTTAATAT-TTT--CCAACT-GAA-C-TACAAGGCT-ATA--T-T-----TG---TT--TG-CTCTTTTC-A--ATA-CAA-A-ATA
gi|107323                     : GTTTTCT-----CA---GAAAACTA-A--ATTAA----T-GAA-GACAGAAA-GAC-A-A-GTA-TT-GT--ATAT-TTT--CCAACT-G-A-C-GACAAG--T-AAA--T-T-----TGC--TT--TGT-TCTTTTC----ATATCAA-A-ATA
gi|107324                     : GTTTTCCTAA--CA---GAAAACCT-AA-ATTAA----T-GA--GACAGAAA-GAC-A-ATGT--TT-GTT-ATAT-TAT--CCAACT-G-A-C-GACAAG--TAACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-
gi|107325                     : GTTTTCT--A--TA---GAAA-CTGGAT-AT-AA----T-GAAAGACAGAAA-GAC-A-AAGTA-CT-GTT-TTATATTT--CC-ACT-G-A-C-AACAAG----ACA--T-T-----TGC--TT--TGTCTCTTATC-A--ATA-CAA-ATATA
gi|107326                     : GTTTTCT--AAATA---GAAAACTG-AT-ATAAA----T-GAA-GACAGAAA-GAC---AAGTATCTGGTT-ATAT-TTTCCCCAACT-G-A-C-GAC-AG--T--CA--T-T-----TGC--TT--TGTCTCTTTTC----ATG-CAA-A-
gi|107327                     : GTTTTCA--T--CA---GAAA-CTG-GTTATTAA------GAA-AACAGAAA-GACAA-AAGTA-CT-TGT-ATAT-TTT--CCAACT-G-A---GACAAG--T-ATA--G-T-----TGT--TT--TGTCTCTGTCC-A--ATA-CAA-A-ATA
gi|107328                     : GTTTTCT--A--TA---GAAAACTG-AT-ATTAA----T-GA------------AC-A-AAG----T-GTT-ATAT-TTT--CCAACTGG-A-C-GACAAG--T-ACATTT-T-----TGCGGTT--TGTCTCTTTTC----ATG-CAAGA-ATA
gi|107329                     :  TTTTCT--A--CATTAAGAAACTT--T-ATTAA----TTGAA-GACAGAAA-G-C-A-AAGAA-CT-GTT-ATAT-TTT---CAACT-G-A-CGGACAAG--T--TA--T-T-----TGTG-TT--TGTTCTTTTTC-A--ATACCAA-A-ATA
gi|107330                     :   TTTCT--A--CA---GAAAACTG-ATCATTAA----T-GAA-GACAGAA--GAC-A-A-GTA-CT-GAT-ATAT-TTT--CCA-CT-G-AAC-GACAAG--T-ACA--T-T-----TGCTGTT--TGTCTCTTTTC-ACCATA-CAA-A-
gi|107331                     :   TTTCT--T--CA---GAAAACTG-AT-ATTAAATAAT-GAA-GACAGAAA-GAC-A-AAGTT-CT-GTT-TTAT-GTT--CCAACT-GTA-C-GAGAAG--T-ACA--TGTACATGTGC--TT--TGTCTCTTATA-A--ATA-CAA-A-ATA
gi|107332                     :   TTTCT--AA-TA---GAAAATTG-TT-ATTAA----T---A-GACAGAAA-GAT-A-AAGTA-CT-GTT-ATAT-TT----CAA-T-G-A-CGGACAAGT-T-ACA--T-T-----TTCT-TT--TGTCTCTTTTCGA--ATA-CAA-A-ATA
gi|107333                     :      CT--A--CA---GACAACTG-TC-ATTAAAC--T-GAA-CAC-GAAA-GAC-A-AATCA-TT-ATC-ATAT-TTT--TCAACT-C-A-C-GACAAG--T-ATA--T-T-----TGT--TTCCTGT-TCTTTTC-A--A-A-CAA-A-ATA
gi|107334                     :                                                       AC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-T-GATAAA--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATG-CAA-A-


blockSeqs                     :        TAA    TTA        GA T     ATAA T   A        G   A T     T  G   A    A   CC      G A A G      GC A   TT G ACATG   GG  CC           ACC    T   G T
blockSeqs                     :        AAA    .          T  C     AC   .   .        .   . .     .  .   .    .   .       . T . G      T  .   T  . .       TG  .            GA     C   . .
blockSeqs                     :        AA     .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       G   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       T   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          T  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        T      .          G  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          A  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        T      .          T  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            A      .   . .
blockSeqs                     :        A      .          T  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            .      .   . .
blockSeqs                     :        .      .          .  .     .    .   .        .   . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            .      .   . .
blockSeqs                     :                                                         . .     .  .   .    .   .       . . . .      .  .   .  . .       .   .            .      .   . .


blockSeqCons                  : 
originalCons                  : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
finalCons                     : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA





Alignments
lowQualScore                  :                                                                                                                          11                                
lowQualScore                  :        55555  444        33 4     8888 2   2        2   2 2     2  2   2    2   33      2 4 2 4      55 2   55 2 55555   00  33           4444   4   2 2   
lowQualScore                  :        .....  ...        .. .     .... .   .        .   . .     .  .   .    .   ..      . . . .      .. .   .. . .....   ..  ..           ....   .   . .   
lowQualScore                  :        88888  111        22 7     2222 4   4        4   2 2     2  2   2    2   11      2 4 2 4      33 2   33 2 66666   66  11           4444   4   2 2   
consensus                     : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
Reference ( family-900 )      : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107317                     : GTTATCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--GCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107318                     : GTTTTCT--A--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTA-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ATAT-T-T-----TGT--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107319                     : GCTTTCT--A--TA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAC--T-ACA--T-T-----TGC--TT--TGTCTC-TTTC-A--ATG-CAA-A-ATA
gi|107320                     : GTTTTCT--A--CA---GAAAACTT-AT-ATTAA----T-GAA--ACAGAAA-GAC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-C-GACAAG--T-ACA--A-T-----TGC--TT--TGT-TCTTTTC-A--ATA-TAA-A-ATA
gi|107321                     : GTTTTCT--A--CA---GAAAACTG-AT-ATTAA----T-GAA-GACAGAAA-GAC-ATAGGT--CT-GTT-ATAC-TTT--TCAACT-G-A-C-GACAAG--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-ATA
gi|107322                     : GTTTTCT--A--CA---GAAAACTG-TT-ATTAA----T-GAA-GACAGAAAGGAC-A-AAGTA-CT-GTTAATAT-TTT--CCAACT-GAA-C-TACAAGGCT-ATA--T-T-----TG---TT--TG-CTCTTTTC-A--ATA-CAA-A-ATA
gi|107323                     : GTTTTCT-----CA---GAAAACTA-A--ATTAA----T-GAA-GACAGAAA-GAC-A-A-GTA-TT-GT--ATAT-TTT--CCAACT-G-A-C-GACAAG--T-AAA--T-T-----TGC--TT--TGT-TCTTTTC----ATATCAA-A-ATA
gi|107324                     : GTTTTCCTAA--CA---GAAAACCT-AA-ATTAA----T-GA--GACAGAAA-GAC-A-ATGT--TT-GTT-ATAT-TAT--CCAACT-G-A-C-GACAAG--TAACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATA-CAA-A-
gi|107325                     : GTTTTCT--A--TA---GAAA-CTGGAT-AT-AA----T-GAAAGACAGAAA-GAC-A-AAGTA-CT-GTT-TTATATTT--CC-ACT-G-A-C-AACAAG----ACA--T-T-----TGC--TT--TGTCTCTTATC-A--ATA-CAA-ATATA
gi|107326                     : GTTTTCT--AAATA---GAAAACTG-AT-ATAAA----T-GAA-GACAGAAA-GAC---AAGTATCTGGTT-ATAT-TTTCCCCAACT-G-A-C-GAC-AG--T--CA--T-T-----TGC--TT--TGTCTCTTTTC----ATG-CAA-A-
gi|107327                     : GTTTTCA--T--CA---GAAA-CTG-GTTATTAA------GAA-AACAGAAA-GACAA-AAGTA-CT-TGT-ATAT-TTT--CCAACT-G-A---GACAAG--T-ATA--G-T-----TGT--TT--TGTCTCTGTCC-A--ATA-CAA-A-ATA
gi|107328                     : GTTTTCT--A--TA---GAAAACTG-AT-ATTAA----T-GA------------AC-A-AAG----T-GTT-ATAT-TTT--CCAACTGG-A-C-GACAAG--T-ACATTT-T-----TGCGGTT--TGTCTCTTTTC----ATG-CAAGA-ATA
gi|107329                     :  TTTTCT--A--CATTAAGAAACTT--T-ATTAA----TTGAA-GACAGAAA-G-C-A-AAGAA-CT-GTT-ATAT-TTT---CAACT-G-A-CGGACAAG--T--TA--T-T-----TGTG-TT--TGTTCTTTTTC-A--ATACCAA-A-ATA
gi|107330                     :   TTTCT--A--CA---GAAAACTG-ATCATTAA----T-GAA-GACAGAA--GAC-A-A-GTA-CT-GAT-ATAT-TTT--CCA-CT-G-AAC-GACAAG--T-ACA--T-T-----TGCTGTT--TGTCTCTTTTC-ACCATA-CAA-A-
gi|107331                     :   TTTCT--T--CA---GAAAACTG-AT-ATTAAATAAT-GAA-GACAGAAA-GAC-A-AAGTT-CT-GTT-TTAT-GTT--CCAACT-GTA-C-GAGAAG--T-ACA--TGTACATGTGC--TT--TGTCTCTTATA-A--ATA-CAA-A-ATA
gi|107332                     :   TTTCT--AA-TA---GAAAATTG-TT-ATTAA----T---A-GACAGAAA-GAT-A-AAGTA-CT-GTT-ATAT-TT----CAA-T-G-A-CGGACAAGT-T-ACA--T-T-----TTCT-TT--TGTCTCTTTTCGA--ATA-CAA-A-ATA
gi|107333                     :      CT--A--CA---GACAACTG-TC-ATTAAAC--T-GAA-CAC-GAAA-GAC-A-AATCA-TT-ATC-ATAT-TTT--TCAACT-C-A-C-GACAAG--T-ATA--T-T-----TGT--TTCCTGT-TCTTTTC-A--A-A-CAA-A-ATA
gi|107334                     :                                                       AC-A-AAGTA-CT-GTT-ATAT-TTT--CCAACT-G-A-T-GATAAA--T-ACA--T-T-----TGC--TT--TGTCTCTTTTC-A--ATG-CAA-A-