lowQualScore : 1 11
lowQualScore : 2 1 7 2 2 55 2 55 2 2 444 2 2
lowQualScore : . . . . . .. . .. . . ... . .
lowQualScore : 5 9 1 4 4 66 4 00 4 4 111 4 4
consensus : TTT-TCTT-GATA-TCAATCGATAGAT-CTTGAT--AA-AC-TGAACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
Reference ( gi|17736 ) : TTT-TCGT-GATA-TCAATCGATAGAT-CTTGAT--AA-AC-AGAACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17737 : TTT-TCGT-GATA-TCAATCGATAGAT-CTTGAT--AA-AC-AGAACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17739 : TTT-TCTT-GATA-TCAATCGATAGAT-CTTGAT--AA-AC-TTAACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17745 : TTT-TCTT-GATA-TTAATCGATAGAT-CTTGAT--AA-AC-TGAACA-C-GT---TTTGCTCT-ACATGTC-TTTACAAA
gi|17741 : TTT-TCTT-TATC-TTAATCGATATAT-CTTGAT--AA-AC-TGAACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17738 : TTT-TCTT-GATA-TTAATCGATAGAT-CTTGATAGAA-AC-TGAACA-A-G----TTTGTTCT-ACATGTC-TTTACAGA
gi|17747 : TTT-TCTT-AATT-TTAATCGATAGAT-CTTGAT--AA-AC-TGAACA-A-GT---TTTGTTCTAACATG-C-TTTACAAA
gi|17746 : TTT-TCTTTGATA-TCAATCGATAGAC-CTTGAT--AA-AT-GAAACA-C-TT---TTTGTTCT-ACATGTC-TTCACAAA
gi|17743 : TTT-TCTT-GATA-TCAATTAATACA--CTCGAT--TA-AC-TGAACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17752 : TTT-T--T-GATA-T-AACTGATAGAT-CTTGAT--AA-AC-TGAACA-A-G----TTTGTTCT-ACATGTC-TTTACAAA
gi|17740 : TTT-TCTT-GATAATCAATCGATAGAT-CTTGATA-AA-AC-TGAACA-A-G----TTTGTTCT-AACTGTC-TTTACA
gi|17750 : TTT-TCTT-GATA-TCA-TCGATATATTCTTGAT--AA-AC-TGAACA-AAGT---TTTGCTCT-ACATGTCTTTTACAAA
gi|17742 : TTT-TCTTTGATA-TCAATCGATAGAC-CTTGAT--AA-AT-GAAACA-C-TT---ATTGTTCT-ACATGTC-TTCACAAA
gi|17744 : TTT-TCTC-GATA-TCAATCAAAAGAT-CTTGAT--AA-AC-TGAACA-A-GT---TTTGTT----CATATC-TT
gi|17748 : TTT-TCTTTGATA-TCAATTGATAGAC-CTTGAT--AA-ATGAAAACACA-GT---CTTTTTC--ACATGTC-TTCACAAA
gi|17751 : TTTATTGT-TATA-TCAATTGATAGAT-CTTGAT--AACAC-TGAACA-A-GTTGGTTTGTTAT-ACATGT--TTTAC
gi|17749 : tTTT-TCTT-GATA-TCAAT-GA-AGAG-CTCTAT--AA-AC-TGA-CA-A-GT---TTTGTTCT-ACATGTC---TACAAA
gi|17753 : T-GATA-TCAAATAATAAAT-CACGAT--AA-AC-TGAACA-A-GT---TTTGTTCT-ACATTTC-TTAGCAAA
Alignments
lowQualScore : 6 33 2 2 55 2 33 2 2 333 2 2
lowQualScore : . .. . . .. . .. . . ... . .
lowQualScore : 7 11 2 2 33 2 11 2 2 999 2 2
consensus : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
Reference ( family-896 ) : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17736 : TTTTCGT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACAG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17737 : TTTTCGT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACAG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17738 : TTTTCTT-G--ATA-TTAATCGATAGAT-CTTGATAGAA-ACTG--AACA-A-G----TTTGTTCT-ACATGTC-TTTACAGA
gi|17739 : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTT--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17740 : TTTTCTT-G--ATAATCAATCGATAGAT-CTTGATA-AA-ACTG--AACA-A-G----TTTGTTCT-AACTGTC-TTTACA
gi|17741 : TTTTCTT-T--ATC-TTAATCGATATAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17742 : TTTTCTTTG--ATA-TCAATCGATAGAC-CTTGAT--AA-ATGA--AACA-C-TT---ATTGTTCT-ACATGTC-TTCACAAA
gi|17743 : TTTTCTT-G--ATA-TCAATTAATACA--CTCGAT--TA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17744 : TTTTCTC-G--ATA-TCAATCAAAAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTT----CATATC-TT
gi|17745 : TTTTCTT-G--ATA-TTAATCGATAGAT-CTTGAT--AA-ACTG--AACA-C-GT---TTTGCTCT-ACATGTC-TTTACAAA
gi|17746 : TTTTCTTTG--ATA-TCAATCGATAGAC-CTTGAT--AA-ATGA--AACA-C-TT---TTTGTTCT-ACATGTC-TTCACAAA
gi|17747 : TTTTCTT-A--ATT-TTAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCTAACATG-C-TTTACAAA
gi|17748 : TTTTCTTTG--ATA-TCAATTGATAGAC-CTTGAT--AA-A-TGAAAACACA-GT---CTTTTTC--ACATGTC-TTCACAAA
gi|17749 : TTTTCTT-G--ATA-TCAAT-GA-AGAG-CTCTAT--AA-ACTG--A-CA-A-GT---TTTGTTCT-ACATGTC---TACAAA
gi|17750 : TTTTCTT-G--ATA-TCA-TCGATATATTCTTGAT--AA-ACTG--AACA-AAGT---TTTGCTCT-ACATGTCTTTTACAAA
gi|17751 : TTTTATT-GTTATA-TCAATTGATAGAT-CTTGAT--AACACTG--AACA-A-GTTGGTTTGTTAT-ACATGT--TTTAC
gi|17752 : TTTTT-G--ATA-T-AACTGATAGAT-CTTGAT--AA-ACTG--AACA-A-G----TTTGTTCT-ACATGTC-TTTACAAA
gi|17753 : TTTT-G--ATA-TCAAATAATAAAT-CACGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATTTC-TTAGCAAA
Alignments
lowQualScore : 6 33 2 2 55 2 33 2 2 333 2 2
lowQualScore : . .. . . .. . .. . . ... . .
lowQualScore : 7 11 2 2 33 2 11 2 2 999 2 2
consensus : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
Reference ( family-896 ) : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17736 : TTTTCGT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACAG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17737 : TTTTCGT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACAG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17738 : TTTTCTT-G--ATA-TTAATCGATAGAT-CTTGATAGAA-ACTG--AACA-A-G----TTTGTTCT-ACATGTC-TTTACAGA
gi|17739 : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTT--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17740 : TTTTCTT-G--ATAATCAATCGATAGAT-CTTGATA-AA-ACTG--AACA-A-G----TTTGTTCT-AACTGTC-TTTACA
gi|17741 : TTTTCTT-T--ATC-TTAATCGATATAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17742 : TTTTCTTTG--ATA-TCAATCGATAGAC-CTTGAT--AA-ATGA--AACA-C-TT---ATTGTTCT-ACATGTC-TTCACAAA
gi|17743 : TTTTCTT-G--ATA-TCAATTAATACA--CTCGAT--TA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17744 : TTTTCTC-G--ATA-TCAATCAAAAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTT----CATATC-TT
gi|17745 : TTTTCTT-G--ATA-TTAATCGATAGAT-CTTGAT--AA-ACTG--AACA-C-GT---TTTGCTCT-ACATGTC-TTTACAAA
gi|17746 : TTTTCTTTG--ATA-TCAATCGATAGAC-CTTGAT--AA-ATGA--AACA-C-TT---TTTGTTCT-ACATGTC-TTCACAAA
gi|17747 : TTTTCTT-A--ATT-TTAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCTAACATG-C-TTTACAAA
gi|17748 : TTTTCTTTG--ATA-TCAATTGATAGAC-CTTGAT--AA-A-TGAAAACACA-GT---CTTTTTC--ACATGTC-TTCACAAA
gi|17749 : TTTTCTT-G--ATA-TCAAT-GA-AGAG-CTCTAT--AA-ACTG--A-CA-A-GT---TTTGTTCT-ACATGTC---TACAAA
gi|17750 : TTTTCTT-G--ATA-TCA-TCGATATATTCTTGAT--AA-ACTG--AACA-AAGT---TTTGCTCT-ACATGTCTTTTACAAA
gi|17751 : TTTTATT-GTTATA-TCAATTGATAGAT-CTTGAT--AACACTG--AACA-A-GTTGGTTTGTTAT-ACATGT--TTTAC
gi|17752 : TTTTT-G--ATA-T-AACTGATAGAT-CTTGAT--AA-ACTG--AACA-A-G----TTTGTTCT-ACATGTC-TTTACAAA
gi|17753 : TTTT-G--ATA-TCAAATAATAAAT-CACGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATTTC-TTAGCAAA
blockSeqs : T TT A T AG C AA C A TGG A T
blockSeqs : T . . . A . . . . . . .
blockSeqs : T . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
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blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
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blockSeqs : . . . . . . . . . . . .
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blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons :
originalCons : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
finalCons : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
Alignments
lowQualScore : 6 33 2 2 55 2 33 2 2 333 2 2
lowQualScore : . .. . . .. . .. . . ... . .
lowQualScore : 7 11 2 2 33 2 11 2 2 999 2 2
consensus : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
Reference ( family-896 ) : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17736 : TTTTCGT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACAG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17737 : TTTTCGT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACAG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17738 : TTTTCTT-G--ATA-TTAATCGATAGAT-CTTGATAGAA-ACTG--AACA-A-G----TTTGTTCT-ACATGTC-TTTACAGA
gi|17739 : TTTTCTT-G--ATA-TCAATCGATAGAT-CTTGAT--AA-ACTT--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17740 : TTTTCTT-G--ATAATCAATCGATAGAT-CTTGATA-AA-ACTG--AACA-A-G----TTTGTTCT-AACTGTC-TTTACA
gi|17741 : TTTTCTT-T--ATC-TTAATCGATATAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17742 : TTTTCTTTG--ATA-TCAATCGATAGAC-CTTGAT--AA-ATGA--AACA-C-TT---ATTGTTCT-ACATGTC-TTCACAAA
gi|17743 : TTTTCTT-G--ATA-TCAATTAATACA--CTCGAT--TA-ACTG--AACA-A-GT---TTTGTTCT-ACATGTC-TTTACAAA
gi|17744 : TTTTCTC-G--ATA-TCAATCAAAAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTT----CATATC-TT
gi|17745 : TTTTCTT-G--ATA-TTAATCGATAGAT-CTTGAT--AA-ACTG--AACA-C-GT---TTTGCTCT-ACATGTC-TTTACAAA
gi|17746 : TTTTCTTTG--ATA-TCAATCGATAGAC-CTTGAT--AA-ATGA--AACA-C-TT---TTTGTTCT-ACATGTC-TTCACAAA
gi|17747 : TTTTCTT-A--ATT-TTAATCGATAGAT-CTTGAT--AA-ACTG--AACA-A-GT---TTTGTTCTAACATG-C-TTTACAAA
gi|17748 : TTTTCTTTG--ATA-TCAATTGATAGAC-CTTGAT--AA-A-TGAAAACACA-GT---CTTTTTC--ACATGTC-TTCACAAA
gi|17749 : TTTTCTT-G--ATA-TCAAT-GA-AGAG-CTCTAT--AA-ACTG--A-CA-A-GT---TTTGTTCT-ACATGTC---TACAAA
gi|17750 : TTTTCTT-G--ATA-TCA-TCGATATATTCTTGAT--AA-ACTG--AACA-AAGT---TTTGCTCT-ACATGTCTTTTACAAA
gi|17751 : TTTTATT-GTTATA-TCAATTGATAGAT-CTTGAT--AACACTG--AACA-A-GTTGGTTTGTTAT-ACATGT--TTTAC
gi|17752 : TTTTT-G--ATA-T-AACTGATAGAT-CTTGAT--AA-ACTG--AACA-A-G----TTTGTTCT-ACATGTC-TTTACAAA
gi|17753 : TTTT-G--ATA-TCAAATAATAAAT-CACGAT--AA-ACTG--AACA-A-GT---TTTGTTCT-ACATTTC-TTAGCAAA