lowQualScore                  :       1                                                                                       
lowQualScore                  :       0  2     1 7   0                5555                    99999     4    55 777           
lowQualScore                  :       .  .     . .   .                ....                    .....     .    .. ...           
lowQualScore                  :       3  5     2 2   7                0000                    11111     5    55 000           
consensus                     : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( gi|82750 )        : TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751                      : TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82757                      : TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82752                      : TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753                      : TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82756                      : TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACC
gi|82759                      : TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTTgttttttt
gi|82758                      : TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82755                      : TAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82761                      : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82760                      : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82754                      :   AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82764                      :  tAGG-GAA-AAAAAAT----CTTTAGCTTCTCAGGCA----CCACCACAT
gi|82763                      :   AGG-GAA-AAAAAAT----CTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765                      :        AA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766                      :        AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82762                      :         A-AAAAAATTAATGTTTAGTTTCTCAGGCA----C
gi|82767                      :       aggctAAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT





Alignments
lowQualScore                  :        4  2     0 3   0                4444                    88888          44 555           
lowQualScore                  :        .  .     . .   .                ....                    .....          .. ...           
lowQualScore                  :        0  4     6 5   1                7777                    33333          66 888           
consensus                     :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( family-894 )      :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
gi|82750                      :  TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751                      :  TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82752                      :  TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753                      :  TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82754                      :    AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82755                      : tTAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82756                      :  TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCG-------------TTTTTTT
gi|82757                      :  TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82758                      :  TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82759                      :  TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTT
gi|82760                      :  TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82761                      :  TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82762                      :    AGGCTAA-AA-AAATTAATGTTTAGTTTCTCAGGCA----C
gi|82763                      :           -AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82764                      :       aggg-AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765                      :     agggAA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766                      :         AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82767                      :             AAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT





Alignments
lowQualScore                  :        4  2     0 3   0                4444                    88888          44 555           
lowQualScore                  :        .  .     . .   .                ....                    .....          .. ...           
lowQualScore                  :        0  4     6 5   1                7777                    33333          66 888           
consensus                     :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( family-894 )      :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
gi|82750                      :  TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751                      :  TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82752                      :  TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753                      :  TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82754                      :    AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82755                      : tTAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82756                      :  TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCG-------------TTTTTTT
gi|82757                      :  TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82758                      :  TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82759                      :  TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTT
gi|82760                      :  TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82761                      :  TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82762                      :    AGGCTAA-AA-AAATTAATGTTTAGTTTCTCAGGCA----C
gi|82763                      :           -AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82764                      :       aggg-AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765                      :     agggAA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766                      :         AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82767                      :             AAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT


blockSeqs                     :        A  T       T                    TGCA                    GTACA          AA TAA
blockSeqs                     :        C  .       T                    .                       .              .  .  
blockSeqs                     :        A  .       T                    .                       .              .  .  
blockSeqs                     :        C  .       T                    .                       .              .  .  
blockSeqs                     :        T  .       T                    .                       .              .  .  
blockSeqs                     :        A  .       T                    .                       .              .  .  
blockSeqs                     :        A  .       C                    .                       .              .  .  
blockSeqs                     :        T  .       C                    .                       .              .  .  
blockSeqs                     :        T  .       T                    .                       .              .  .  
blockSeqs                     :        T  .       T                    .                       .              .  .  
blockSeqs                     :        T  .       T                    .                       .              .  .  
blockSeqs                     :        .  .       T                    .                                            
blockSeqs                     :           .       .                    .                                            
blockSeqs                     :           .       .                    .                                            
blockSeqs                     :           .       .                    .                                            
blockSeqs                     :           .       .                    .                                            
blockSeqs                     :                   .                    .                                            


blockSeqCons                  :  
originalCons                  :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
finalCons                     :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT





Alignments
lowQualScore                  :        4  2     0 3   0                4444                    88888          44 555           
lowQualScore                  :        .  .     . .   .                ....                    .....          .. ...           
lowQualScore                  :        0  4     6 5   1                7777                    33333          66 888           
consensus                     :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( family-894 )      :  TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
gi|82750                      :  TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751                      :  TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82752                      :  TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753                      :  TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82754                      :    AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82755                      : tTAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82756                      :  TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCG-------------TTTTTTT
gi|82757                      :  TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82758                      :  TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82759                      :  TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTT
gi|82760                      :  TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82761                      :  TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82762                      :    AGGCTAA-AA-AAATTAATGTTTAGTTTCTCAGGCA----C
gi|82763                      :           -AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82764                      :       aggg-AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765                      :     agggAA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766                      :         AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82767                      :             AAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT