lowQualScore : 1
lowQualScore : 0 2 1 7 0 5555 99999 4 55 777
lowQualScore : . . . . . .... ..... . .. ...
lowQualScore : 3 5 2 2 7 0000 11111 5 55 000
consensus : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( gi|82750 ) : TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751 : TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82757 : TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82752 : TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753 : TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82756 : TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACC
gi|82759 : TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTTgttttttt
gi|82758 : TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82755 : TAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82761 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82760 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82754 : AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82764 : tAGG-GAA-AAAAAAT----CTTTAGCTTCTCAGGCA----CCACCACAT
gi|82763 : AGG-GAA-AAAAAAT----CTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765 : AA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766 : AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82762 : A-AAAAAATTAATGTTTAGTTTCTCAGGCA----C
gi|82767 : aggctAAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT
Alignments
lowQualScore : 4 2 0 3 0 4444 88888 44 555
lowQualScore : . . . . . .... ..... .. ...
lowQualScore : 0 4 6 5 1 7777 33333 66 888
consensus : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( family-894 ) : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
gi|82750 : TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751 : TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82752 : TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753 : TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82754 : AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82755 : tTAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82756 : TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCG-------------TTTTTTT
gi|82757 : TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82758 : TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82759 : TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTT
gi|82760 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82761 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82762 : AGGCTAA-AA-AAATTAATGTTTAGTTTCTCAGGCA----C
gi|82763 : -AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82764 : aggg-AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765 : agggAA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766 : AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82767 : AAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT
Alignments
lowQualScore : 4 2 0 3 0 4444 88888 44 555
lowQualScore : . . . . . .... ..... .. ...
lowQualScore : 0 4 6 5 1 7777 33333 66 888
consensus : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( family-894 ) : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
gi|82750 : TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751 : TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82752 : TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753 : TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82754 : AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82755 : tTAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82756 : TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCG-------------TTTTTTT
gi|82757 : TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82758 : TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82759 : TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTT
gi|82760 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82761 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82762 : AGGCTAA-AA-AAATTAATGTTTAGTTTCTCAGGCA----C
gi|82763 : -AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82764 : aggg-AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765 : agggAA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766 : AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82767 : AAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT
blockSeqs : A T T TGCA GTACA AA TAA
blockSeqs : C . T . . . .
blockSeqs : A . T . . . .
blockSeqs : C . T . . . .
blockSeqs : T . T . . . .
blockSeqs : A . T . . . .
blockSeqs : A . C . . . .
blockSeqs : T . C . . . .
blockSeqs : T . T . . . .
blockSeqs : T . T . . . .
blockSeqs : T . T . . . .
blockSeqs : . . T .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . . .
blockSeqs : . .
blockSeqCons :
originalCons : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
finalCons : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Alignments
lowQualScore : 4 2 0 3 0 4444 88888 44 555
lowQualScore : . . . . . .... ..... .. ...
lowQualScore : 0 4 6 5 1 7777 33333 66 888
consensus : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
Reference ( family-894 ) : TAAGGCNAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTTTTT
gi|82750 : TAAGGCGAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCACATC--T---AAATTTTTTTT
gi|82751 : TAAGGCAAA-AAATATTTAATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AAATTTTT
gi|82752 : TAAGGCCAA-AAAAAAA-AATCTTTAGTTTCTCAGGCA----CCGCCACATCTGTTCAAAAG-----GTACCGCATC--T---AATTTTTTTTT
gi|82753 : TGAGGCAAATAAAAAAT--ATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTTCCGCATC--T---AAATTTGTTTT
gi|82754 : AGGCCAA-AAAAAATTAATCTTTAGTTTCTCAGGCA----CCGTTGCATCTGTTCAAAAG-----GTACTGCATC--T---AAA
gi|82755 : tTAAGGCTAA-AAAAAATTAATGTTTAGTTTCTCAGGTA----C
gi|82756 : TAAGGCAAA-ACAAAATTAATCTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTACCG-------------TTTTTTT
gi|82757 : TATGGCAAA-AAAAAATTAATCTTTAGTTTCTCGGGCA----CCGCCACATCTGTTGAAAAG-----GTACCACATC--TTAAAAATTTTTTT
gi|82758 : TAAGGC--A-AAAATAT--ATTTTTAGTTTCTCAGGCA----CCGCTGCATTTGTTCAAAAGGTACAGTACTGCATC--T---GAATTTTTTTT
gi|82759 : TAAGGCTAA-TTAAA--TAGTCTTTAGTTTATCAGGCA----CCGCCGCATCTGTCCTAAAG-----GTGCCGCATC--T---AAACTTTTTTT
gi|82760 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82761 : TAAGGCTAA-AAAAA-TCAATGTTTAGTTTCTCAGGCA----C
gi|82762 : AGGCTAA-AA-AAATTAATGTTTAGTTTCTCAGGCA----C
gi|82763 : -AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82764 : aggg-AAAAAA--AATCTTTAGCTTCTCAGGCA----CCACCACAT
gi|82765 : agggAA-AAAAAATTAATGTTTAGTTTCTCAGGCA----CCGCCGCATCTGTTCAAAAG-----GTGCCGCATC--T---AAA
gi|82766 : AA-AAAAAATTAATTTTTAGTTTCTCAGGCATGCACCGCCGCATCTGTTCAAAAG-----TTACCGCATC--T---AAATATTTT
gi|82767 : AAAAATT----TTTAGTTTCTCAGGCA----CTGCCGCAACTGTCTAAAAG-----GTGCCGCATCAAT---ATATTTACTTT