lowQualScore : 1111111111111111111111
lowQualScore : 33 4 4 4 2 2 2 2 33 2 2 4 33 2 9999999999999999999999 2 2 2 2 2 2 55 66
lowQualScore : .. . . . . . . . .. . . . .. . ...................... . . . . . . .. ..
lowQualScore : 11 4 4 4 2 2 2 2 11 2 2 4 11 2 7777777777777777777777 2 2 2 2 4 4 66 33
consensus : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
Reference ( gi|102384 ) : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102370 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-C-CGT--GACG--TAGAA
gi|102385 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TTGAA
gi|102371 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-T-TGATTT-TC--C-CTA----------------------A-TCTG-GT-C-AC-T-CGT--GACG--TAGAA
gi|102372 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-T---C-CTA----------------------A-TCTG-GA-C-AC-TCCGT--GACG--TAGAA
gi|102373 : aAAGAG--G-G-TGTT-GC-AACAG-A--G--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102374 : aAAGAG--G-GGTGTT-GC-A-CAG-G-AG--CG-GGTGATTT-TC--C-CTA----------------------A-TCTGAAA-C-AC-T-CGTG-GACGT-TAGAA
gi|102375 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TTCAC-CTA----------------------A--CTG-GACC-CC-T-CATTAGACG--TAGAA
gi|102376 : aAAGAG--G---TGTTTGC-A-CAG-A-AG--CG-G-TGA-TT-TG--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GA
gi|102377 : aAAGAG--G-A-TGT--GC-A-CAG-A-AG--CGAG-TGG-TT-TC--C-CTA----------------------A-TCT--GA-CAAC-T-CGT--GACG--TAGAA
gi|102378 : aAAGAG--G-GGTGTT-G--A-CAA-A-----CG-G-T-ATTT-TC--C-CTA------------------------TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102379 : aAAGAG--C-G-TGTT-GC-A-CAG-A-AG--CG-T-GGATTTGTC--C-CTA----------------------A-TCTG-AA-C-AC-T-CG---GAC
gi|102380 : aAAGAG--G-G-TGT--GC-A-CA--A-AG--CG---TAATTC--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG---AGA
gi|102381 : aAAGAGTTGTG-TGTT-G--A-CAG-ATAGACTG-G-TGATTT-TC--C-CTT----------------------G-TCTG-GA-C-AC-T-CGT--GACG--TA
gi|102386 : aAAGAG--G-G-TGTT-GCAA-CAGAA-AG--CG-G--GTTTT-TC--CACTA----------------------ATTCTG-GA-C-AT-T-GGT--GACGTTTAGAA
gi|102382 : AAGAA--GTG-TGTTTGC-A-CAG-A-AG--CG-G-TGATTTCTC--C-CTA----------------------A-ATTG-GA-C-A
gi|102383 : aAAGAG--A-G-TGTT-GC-A-CAG-A-AG--CG-G-TAAATT-TC--C-TTAAACGCGGAATTCCGTGCCGGGTA-TTTA-AA-C-ACTT-CGT--GACG--TAGAA
gi|102387 : aAGAG--G-G-TATT-GC-A-CA----AG--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AA---CGT--GACG--TAGA
gi|102388 : GAG--G-G-TGTT-GC-G-CAA-G-AG---G-G-TGATTT-TC--C-CTA----------------------A-TCTG-G--C-AC-T-CGT--GACG--T-GAA
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 22 6 4 2 2 2 2 2 22 2 2 4 22 2 8888888888888888888888 2 2 2 2 2 2 55 55
lowQualScore : .. . . . . . . . .. . . . .. . ...................... . . . . . . .. ..
lowQualScore : 99 3 2 1 1 1 1 1 99 1 1 2 99 1 7777777777777777777777 1 1 1 1 2 2 33 99
consensus : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
Reference ( family-886 ) : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102370 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-C-CGT--GACG--TAGAA
gi|102371 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-T-TGATTT-TC--C-CTA----------------------A-TCTG-GT-C-AC-T-CGT--GACG--TAGAA
gi|102372 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-T---C-CTA----------------------A-TCTG-GA-C-AC-TCCGT--GACG--TAGAA
gi|102373 : aAAGAG--G-G-TGTT-GC-AACAG-A--G--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102374 : aAAGAG--G-GGTGTT-GC-A-CAG-G-AG--CG-GGTGATTT-TC--C-CTA----------------------A-TCTGAAA-C-AC-T-CGTG-GACGT-TAGAA
gi|102375 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TTCAC-CTA----------------------A--CTG-GACC-CC-T-CATTAGACG--TAGAA
gi|102376 : aAAGAG--GTG-T-TT-GC-A-CAG-A-AG--CG-G-TGA-TT-TG--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GA
gi|102377 : aAAGAG--G-A-TGT--GC-A-CAG-A-AG--CGAG-TGG-TT-TC--C-CTA----------------------A-TCT--GA-CAAC-T-CGT--GACG--TAGAA
gi|102378 : aAAGAG--G-GGTGTT-G--A-CAA-A-----CG-G-T-ATTT-TC--C-CTA------------------------TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102379 : aAAGAG--C-G-TGTT-GC-A-CAG-A-AG--CG-T-GGATTTGTC--C-CTA----------------------A-TCTG-AA-C-AC-T-CG---GAC
gi|102380 : aAAGAG--G-G-TGT--GC-A-CA--A-AG--CG---TAATTC--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG---AGA
gi|102381 : aAAGAGTTGTG-TGTT-G--A-CAG-ATAGACTG-G-TGATTT-TC--C-CTT----------------------G-TCTG-GA-C-AC-T-CGT--GACG--TA
gi|102382 : aAAGAA--GTG-TGTTTGC-A-CAG-A-AG--CG-G-TGATTTCTC--C-CTA----------------------A-ATTG-GA-C-A
gi|102383 : aAAGAG--A-G-TGTT-GC-A-CAG-A-AG--CG-G-TAAATT-TC--C-TTAAACGCGGAATTCCGTGCCGGGTA-TTTA-AA-C-ACTT-CGT--GACG--TAGAA
gi|102384 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102385 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TTGAA
gi|102386 : AAGAG--G-G-TGTT-GCAA-CAGAA-AG--CG-G--GTTTT-TC--CACTA----------------------ATTCTG-GA-C-AT-T-GGT--GACGTTTAGAA
gi|102387 : AGAG--G-G-TATT-GC-A-CA----AG--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AA---CGT--GACG--TAGA
gi|102388 : GAG--G-G-TGTT-GC-G-CAA-G-AG---G-G-TGATTT-TC--C-CTA----------------------A-TCTG-G--C-AC-T-CGT--GACG--T-GAA
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 22 6 4 2 2 2 2 2 22 2 2 4 22 2 8888888888888888888888 2 2 2 2 2 2 55 55
lowQualScore : .. . . . . . . . .. . . . .. . ...................... . . . . . . .. ..
lowQualScore : 99 3 2 1 1 1 1 1 99 1 1 2 99 1 7777777777777777777777 1 1 1 1 2 2 33 99
consensus : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
Reference ( family-886 ) : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102370 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-C-CGT--GACG--TAGAA
gi|102371 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-T-TGATTT-TC--C-CTA----------------------A-TCTG-GT-C-AC-T-CGT--GACG--TAGAA
gi|102372 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-T---C-CTA----------------------A-TCTG-GA-C-AC-TCCGT--GACG--TAGAA
gi|102373 : aAAGAG--G-G-TGTT-GC-AACAG-A--G--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102374 : aAAGAG--G-GGTGTT-GC-A-CAG-G-AG--CG-GGTGATTT-TC--C-CTA----------------------A-TCTGAAA-C-AC-T-CGTG-GACGT-TAGAA
gi|102375 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TTCAC-CTA----------------------A--CTG-GACC-CC-T-CATTAGACG--TAGAA
gi|102376 : aAAGAG--GTG-T-TT-GC-A-CAG-A-AG--CG-G-TGA-TT-TG--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GA
gi|102377 : aAAGAG--G-A-TGT--GC-A-CAG-A-AG--CGAG-TGG-TT-TC--C-CTA----------------------A-TCT--GA-CAAC-T-CGT--GACG--TAGAA
gi|102378 : aAAGAG--G-GGTGTT-G--A-CAA-A-----CG-G-T-ATTT-TC--C-CTA------------------------TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102379 : aAAGAG--C-G-TGTT-GC-A-CAG-A-AG--CG-T-GGATTTGTC--C-CTA----------------------A-TCTG-AA-C-AC-T-CG---GAC
gi|102380 : aAAGAG--G-G-TGT--GC-A-CA--A-AG--CG---TAATTC--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG---AGA
gi|102381 : aAAGAGTTGTG-TGTT-G--A-CAG-ATAGACTG-G-TGATTT-TC--C-CTT----------------------G-TCTG-GA-C-AC-T-CGT--GACG--TA
gi|102382 : aAAGAA--GTG-TGTTTGC-A-CAG-A-AG--CG-G-TGATTTCTC--C-CTA----------------------A-ATTG-GA-C-A
gi|102383 : aAAGAG--A-G-TGTT-GC-A-CAG-A-AG--CG-G-TAAATT-TC--C-TTAAACGCGGAATTCCGTGCCGGGTA-TTTA-AA-C-ACTT-CGT--GACG--TAGAA
gi|102384 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102385 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TTGAA
gi|102386 : AAGAG--G-G-TGTT-GCAA-CAGAA-AG--CG-G--GTTTT-TC--CACTA----------------------ATTCTG-GA-C-AT-T-GGT--GACGTTTAGAA
gi|102387 : AGAG--G-G-TATT-GC-A-CA----AG--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AA---CGT--GACG--TAGA
gi|102388 : GAG--G-G-TGTT-GC-G-CAA-G-AG---G-G-TGATTT-TC--C-CTA----------------------A-TCTG-G--C-AC-T-CGT--GACG--T-GAA
blockSeqs : TT T G T A A A T AC A G G CA A AACGCGGAATTCCGTGCCGGGT T A C A T C TA TT
blockSeqs : . T G . . . . . . . . C . . . . . . . . . G T
blockSeqs : . T . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqCons :
originalCons : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
finalCons : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
Alignments
lowQualScore : 1111111111111111111111
lowQualScore : 22 6 4 2 2 2 2 2 22 2 2 4 22 2 8888888888888888888888 2 2 2 2 2 2 55 55
lowQualScore : .. . . . . . . . .. . . . .. . ...................... . . . . . . .. ..
lowQualScore : 99 3 2 1 1 1 1 1 99 1 1 2 99 1 7777777777777777777777 1 1 1 1 2 2 33 99
consensus : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
Reference ( family-886 ) : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102370 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-C-CGT--GACG--TAGAA
gi|102371 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-T-TGATTT-TC--C-CTA----------------------A-TCTG-GT-C-AC-T-CGT--GACG--TAGAA
gi|102372 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-T---C-CTA----------------------A-TCTG-GA-C-AC-TCCGT--GACG--TAGAA
gi|102373 : aAAGAG--G-G-TGTT-GC-AACAG-A--G--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102374 : aAAGAG--G-GGTGTT-GC-A-CAG-G-AG--CG-GGTGATTT-TC--C-CTA----------------------A-TCTGAAA-C-AC-T-CGTG-GACGT-TAGAA
gi|102375 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TTCAC-CTA----------------------A--CTG-GACC-CC-T-CATTAGACG--TAGAA
gi|102376 : aAAGAG--GTG-T-TT-GC-A-CAG-A-AG--CG-G-TGA-TT-TG--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GA
gi|102377 : aAAGAG--G-A-TGT--GC-A-CAG-A-AG--CGAG-TGG-TT-TC--C-CTA----------------------A-TCT--GA-CAAC-T-CGT--GACG--TAGAA
gi|102378 : aAAGAG--G-GGTGTT-G--A-CAA-A-----CG-G-T-ATTT-TC--C-CTA------------------------TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102379 : aAAGAG--C-G-TGTT-GC-A-CAG-A-AG--CG-T-GGATTTGTC--C-CTA----------------------A-TCTG-AA-C-AC-T-CG---GAC
gi|102380 : aAAGAG--G-G-TGT--GC-A-CA--A-AG--CG---TAATTC--C--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG---AGA
gi|102381 : aAAGAGTTGTG-TGTT-G--A-CAG-ATAGACTG-G-TGATTT-TC--C-CTT----------------------G-TCTG-GA-C-AC-T-CGT--GACG--TA
gi|102382 : aAAGAA--GTG-TGTTTGC-A-CAG-A-AG--CG-G-TGATTTCTC--C-CTA----------------------A-ATTG-GA-C-A
gi|102383 : aAAGAG--A-G-TGTT-GC-A-CAG-A-AG--CG-G-TAAATT-TC--C-TTAAACGCGGAATTCCGTGCCGGGTA-TTTA-AA-C-ACTT-CGT--GACG--TAGAA
gi|102384 : aAAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TAGAA
gi|102385 : AAGAG--G-G-TGTT-GC-A-CAG-A-AG--CG-G-TGATTT-TC--C-CTA----------------------A-TCTG-GA-C-AC-T-CGT--GACG--TTGAA
gi|102386 : AAGAG--G-G-TGTT-GCAA-CAGAA-AG--CG-G--GTTTT-TC--CACTA----------------------ATTCTG-GA-C-AT-T-GGT--GACGTTTAGAA
gi|102387 : AGAG--G-G-TATT-GC-A-CA----AG--CG-G-TGATTT--C--C-CTA----------------------A-TCTG-GA-C-AA---CGT--GACG--TAGA
gi|102388 : GAG--G-G-TGTT-GC-G-CAA-G-AG---G-G-TGATTT-TC--C-CTA----------------------A-TCTG-G--C-AC-T-CGT--GACG--T-GAA