lowQualScore : 1
lowQualScore : 2 0 1 2 4 22 2 2 66 4444 2 2 4 1 4 33 0
lowQualScore : . . . . . .. . . .. .... . . . . . .. .
lowQualScore : 5 5 3 7 7 66 2 2 11 7777 2 2 4 1 4 11 6
consensus : ACTCTTGTTTCC-CCG-TTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
Reference ( gi|30289 ) : ACTGTTATTTTC-CCG-TTCAAGC-CA-G-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30286 : ACTCTTGTTTCC-CCG-TTCAAGA-AA-A-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30287 : ACTCTTGTTTCC-CCG-TTCAAGA-CA-G-TTT--AAA----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGAGGG
gi|30288 : ACTCTTGTTTCC-CCG-TTCAAGA-CA-G-TTT--AGG----CT-ATTGGATCCCATCCCCTTCAGAG--AAAATGGGGG
gi|30290 : ACTCTTGTTTCC-CCG-TTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCTT-CCTTTCGAAG--AAAACGGGAGG
gi|30294 : ACTCTTATTTTC-CCG-TTCAAGC-CA---TTT--AGG----CT-A-TGG---TCAT-CCTTTCAGAG----AATGGGGAG
gi|30291 : ACTCTTAATTCC-CCA-CCCAAGC-CG-G-TTT--AGG----CT-A-TGGA-CTCAT-CCTTTCAGAG--AAAACGGGAGG
gi|30292 : ACTCTTGTTTTC-CAG-TTAAAGC-CA-G-TTT--AGA----CT-A-TGGACCACTT-CCTTTCGGAG--AAAACGGGGAG
gi|30295 : ACTCTTGCTTTCACTG-TTCAA-C-CA-G-TTTTTAGG----CT-A-TGGA--CCATTCCTTTCGGCG--AAAACGGGAGG
gi|30296 : ACTCTTGTTTCT-CGG-TTCAAAC-CA-A-TTT--AGGCCTACT-A-TGAACCACTT-TCTTTTGGAG--AAAAAGGGAGG
gi|30297 : CTGTTATTT-C-CCG-T-CAAGC-CA-GTTTT--AGG-----T-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGG
gi|30301 : TATTTCC-CCG-TTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
gi|30299 : TTTTC-CTGGTTCAAAC-TA-G-TTT--AGG----CT-A-T-GACCTCTT-CCTTTCGGAC--AAAACGGGGGG
gi|30300 : ttTTGTC-CCG-TGCAAGAGCA-G-GTT--AGG----TT-A-TGGATCCCAT-CC-TTCAGAGATAAAATGGG
gi|30302 : TTTC-CTGGTTCAAAA-CA-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAA--CAAACGGGGGG
gi|30298 : TTT-CCG-TTCAAGA-CA-G-TTTTTAGT----GT-A-TGGATCC-AT-CCT--CAGAG--AAAATGGGGGG
gi|30303 : tcttgG-TTCAAAC-CA-G-TTT--AGG----CT-A-TGGACCACTT-CCTTTCGGAG--AAAAAGGGGGG
gi|30293 : G-TTCAAGA-CAAG-CTT--AGG----CTTA-TG-ATCCCAT-CCTTTCAGAG--AAAATTGGGG
gi|30304 : actctttgttccaaA-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAC--AAAACGGGGGG
Alignments
lowQualScore : 2 2 2 2 2 55 4444 2 2 0 3 2 22 0
lowQualScore : . . . . . .. .... . . . . . .. .
lowQualScore : 4 7 2 1 1 88 5555 1 1 7 2 1 99 2
consensus : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
Reference ( family-875 ) : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
gi|30286 : ACTCTTG-TTTCCCCGTTCAAGA-AA-A-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30287 : ACTCTTG-TTTCCCCGTTCAAGA-CA-G-TTT--AAA----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGAGGG
gi|30288 : ACTCTTG-TTTCCCCGTTCAAGA-CA-G-TTT--AGG----CT-ATTGGATCCCATCCCCTTCAGAG--AAAATGGGGG
gi|30289 : ACTGTTA-TTTTCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30290 : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCTT-CCTTTCGAAG--AAAACGGGAGG
gi|30291 : ACTCTTA-ATTCCCCACCCAAGC-CG-G-TTT--AGG----CT-A-TGGA-CTCAT-CCTTTCAGAG--AAAACGGGAGG
gi|30292 : ACTCTTG-TTTTCCAGTTAAAGC-CA-G-TTT--AGA----CT-A-TGGACCACTT-CCTTTCGGAG--AAAACGGGGAG
gi|30293 : ACTCTTT-GTTCCAAGTTCAAGA-CAAG-CTT--AGG----CTTA-TG-ATCCCAT-CCTTTCAGAG--AAAATTGGGG
gi|30294 : ACTCTTA-TTTTCCCGTTCAAGC-CA---TTT--AGG----CT-A-TGG---TCAT-CCTTTCAGAG----AATGGGGAG
gi|30295 : ACTCTTGCTTTCACTGTTCAA-C-CA-G-TTTTTAGG----CT-A-TGGACCAT-T-CCTTTCGGCG--AAAACGGGAGG
gi|30296 : ACTCTTG-TTTCTCGGTTCAAAC-CA-A-TTT--AGGCCTACT-A-TGAACCACTT-TCTTTTGGAG--AAAAAGGGAGG
gi|30297 : CTGTTA-TTTCCC-GT-CAAGC-CA-GTTTT--AGG-----T-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGG
gi|30298 : TCTTG-TTTCC--GTTCAAGA-CA-G-TTTTTAGT----GT-A-TGGATCC-AT-CCT--CAGAG--AAAATGGGGGG
gi|30299 : TTT-TTTCCTGGTTCAAAC-TA-G-TTT--AGG----CT-A-TG-ACCTCTT-CCTTTCGGAC--AAAACGGGGGG
gi|30300 : TTG-T---CCCGTGCAAGAGCA-G-GTT--AGG----TT-A-TGGATCCCAT-CC-TTCAGAGATAAAATGGG
gi|30301 : TA-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
gi|30302 : -TTTCCTGGTTCAAAA-CA-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAA--CAAACGGGGGG
gi|30303 : GTTCAAAC-CA-G-TTT--AGG----CT-A-TGGACCACTT-CCTTTCGGAG--AAAAAGGGGGG
gi|30304 : A-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAC--AAAACGGGGGG
Alignments
lowQualScore : 2 2 2 2 2 55 4444 2 2 0 3 2 22 0
lowQualScore : . . . . . .. .... . . . . . .. .
lowQualScore : 4 7 2 1 1 88 5555 1 1 7 2 1 99 2
consensus : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
Reference ( family-875 ) : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
gi|30286 : ACTCTTG-TTTCCCCGTTCAAGA-AA-A-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30287 : ACTCTTG-TTTCCCCGTTCAAGA-CA-G-TTT--AAA----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGAGGG
gi|30288 : ACTCTTG-TTTCCCCGTTCAAGA-CA-G-TTT--AGG----CT-ATTGGATCCCATCCCCTTCAGAG--AAAATGGGGG
gi|30289 : ACTGTTA-TTTTCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30290 : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCTT-CCTTTCGAAG--AAAACGGGAGG
gi|30291 : ACTCTTA-ATTCCCCACCCAAGC-CG-G-TTT--AGG----CT-A-TGGA-CTCAT-CCTTTCAGAG--AAAACGGGAGG
gi|30292 : ACTCTTG-TTTTCCAGTTAAAGC-CA-G-TTT--AGA----CT-A-TGGACCACTT-CCTTTCGGAG--AAAACGGGGAG
gi|30293 : ACTCTTT-GTTCCAAGTTCAAGA-CAAG-CTT--AGG----CTTA-TG-ATCCCAT-CCTTTCAGAG--AAAATTGGGG
gi|30294 : ACTCTTA-TTTTCCCGTTCAAGC-CA---TTT--AGG----CT-A-TGG---TCAT-CCTTTCAGAG----AATGGGGAG
gi|30295 : ACTCTTGCTTTCACTGTTCAA-C-CA-G-TTTTTAGG----CT-A-TGGACCAT-T-CCTTTCGGCG--AAAACGGGAGG
gi|30296 : ACTCTTG-TTTCTCGGTTCAAAC-CA-A-TTT--AGGCCTACT-A-TGAACCACTT-TCTTTTGGAG--AAAAAGGGAGG
gi|30297 : CTGTTA-TTTCCC-GT-CAAGC-CA-GTTTT--AGG-----T-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGG
gi|30298 : TCTTG-TTTCC--GTTCAAGA-CA-G-TTTTTAGT----GT-A-TGGATCC-AT-CCT--CAGAG--AAAATGGGGGG
gi|30299 : TTT-TTTCCTGGTTCAAAC-TA-G-TTT--AGG----CT-A-TG-ACCTCTT-CCTTTCGGAC--AAAACGGGGGG
gi|30300 : TTG-T---CCCGTGCAAGAGCA-G-GTT--AGG----TT-A-TGGATCCCAT-CC-TTCAGAGATAAAATGGG
gi|30301 : TA-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
gi|30302 : -TTTCCTGGTTCAAAA-CA-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAA--CAAACGGGGGG
gi|30303 : GTTCAAAC-CA-G-TTT--AGG----CT-A-TGGACCACTT-CCTTTCGGAG--AAAAAGGGGGG
gi|30304 : A-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAC--AAAACGGGGGG
blockSeqs : C C G A T TT CCTA T T A C AT
blockSeqs : . C . . . TT . . . A . .
blockSeqs : . C . . . . . . . A . .
blockSeqs : . C . . . . . . . T . .
blockSeqs : . C . . . . . . . A . .
blockSeqs : . A . . . . . . . T . .
blockSeqs : . A . . . . . . . A . .
blockSeqs : . C . . . . . . . A . .
blockSeqs : . T . . . . . . . T . .
blockSeqs : . G . . . . . . . A . .
blockSeqs : . G . . . . . . . A . .
blockSeqs : . C . . . . . . . T . .
blockSeqs : . C . . . . . . . A . .
blockSeqs : . G . . . . . . . A . .
blockSeqs : . . . . . . . . . T . .
blockSeqs : . . . . . . . . . T . .
blockSeqs : . . . . . . . T . .
blockSeqs : . . . . . . . . .
blockSeqCons :
originalCons : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
finalCons : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
Alignments
lowQualScore : 2 2 2 2 2 55 4444 2 2 0 3 2 22 0
lowQualScore : . . . . . .. .... . . . . . .. .
lowQualScore : 4 7 2 1 1 88 5555 1 1 7 2 1 99 2
consensus : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
Reference ( family-875 ) : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
gi|30286 : ACTCTTG-TTTCCCCGTTCAAGA-AA-A-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30287 : ACTCTTG-TTTCCCCGTTCAAGA-CA-G-TTT--AAA----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGAGGG
gi|30288 : ACTCTTG-TTTCCCCGTTCAAGA-CA-G-TTT--AGG----CT-ATTGGATCCCATCCCCTTCAGAG--AAAATGGGGG
gi|30289 : ACTGTTA-TTTTCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGGG
gi|30290 : ACTCTTG-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCTT-CCTTTCGAAG--AAAACGGGAGG
gi|30291 : ACTCTTA-ATTCCCCACCCAAGC-CG-G-TTT--AGG----CT-A-TGGA-CTCAT-CCTTTCAGAG--AAAACGGGAGG
gi|30292 : ACTCTTG-TTTTCCAGTTAAAGC-CA-G-TTT--AGA----CT-A-TGGACCACTT-CCTTTCGGAG--AAAACGGGGAG
gi|30293 : ACTCTTT-GTTCCAAGTTCAAGA-CAAG-CTT--AGG----CTTA-TG-ATCCCAT-CCTTTCAGAG--AAAATTGGGG
gi|30294 : ACTCTTA-TTTTCCCGTTCAAGC-CA---TTT--AGG----CT-A-TGG---TCAT-CCTTTCAGAG----AATGGGGAG
gi|30295 : ACTCTTGCTTTCACTGTTCAA-C-CA-G-TTTTTAGG----CT-A-TGGACCAT-T-CCTTTCGGCG--AAAACGGGAGG
gi|30296 : ACTCTTG-TTTCTCGGTTCAAAC-CA-A-TTT--AGGCCTACT-A-TGAACCACTT-TCTTTTGGAG--AAAAAGGGAGG
gi|30297 : CTGTTA-TTTCCC-GT-CAAGC-CA-GTTTT--AGG-----T-A-TGGATCCCAT-CCTTTCAGAG--AAAATGGGGG
gi|30298 : TCTTG-TTTCC--GTTCAAGA-CA-G-TTTTTAGT----GT-A-TGGATCC-AT-CCT--CAGAG--AAAATGGGGGG
gi|30299 : TTT-TTTCCTGGTTCAAAC-TA-G-TTT--AGG----CT-A-TG-ACCTCTT-CCTTTCGGAC--AAAACGGGGGG
gi|30300 : TTG-T---CCCGTGCAAGAGCA-G-GTT--AGG----TT-A-TGGATCCCAT-CC-TTCAGAGATAAAATGGG
gi|30301 : TA-TTTCCCCGTTCAAGC-CA-G-TTT--AGG----CT-A-TGGACCCCAT-CCTTTCGGAG--AAAACGGGGGG
gi|30302 : -TTTCCTGGTTCAAAA-CA-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAA--CAAACGGGGGG
gi|30303 : GTTCAAAC-CA-G-TTT--AGG----CT-A-TGGACCACTT-CCTTTCGGAG--AAAAAGGGGGG
gi|30304 : A-G-TTT--AGG----CT-A-TGGACCTCTT-CCTTTCGGAC--AAAACGGGGGG