lowQualScore                  :                                           1                                                                                               1111111                                       11                                                                                                                                      11                                    1    
lowQualScore                  :         3  3 3  1   44 1  3 555 3    0    5   3    44  88      77     999 3         3      44  3   5 3    3 999999      999 3      7      6666666   3      33   3 3  6    3      77777  00   2 2       5  2     2 3       2      2    2     5555  22 33      2 2 2    2 99999999  5       4444      2   2    33      33  33  33 77  1 2    5   2 2 66        2        0    
lowQualScore                  :         .  . .  .   .. .  . ... .    .    .   .    ..  ..      ..     ... .         .      ..  .   . .    . ......      ... .      .      .......   .      ..   . .  .    .      .....  ..   . .       .  .     . .       .      .    .     ....  .. ..      . . .    . ........  .       ....      .   .    ..      ..  ..  .. ..  . .    .   . . ..        .        .    
lowQualScore                  :         3  3 3  1   66 6  3 000 3    5    5   3    77  22      99     222 3         3      66  3   4 3    3 666666      222 3      4      5555555   6      88   6 6  7    3      77777  44   9 9       3  7     7 3       5      7    7     7777  77 77      7 7 7    7 77777777  3       7777      5   5    44      44  44  44 44  1 5    0   5 5 66        5        1    
consensus                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GT-AGGATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTTGTN--C-T-ATG-CACTTTT-AGT-G-TA-TCAT-AAACTC-----AT--GCC-T-ATATTTA-GC-TGGTC-ACATGACTC-AAAGCA-CGTG-ATGAT----TCA-A--TTTTAT-G-T-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--AT--TA--C-TACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
Reference ( gi|131057 )       : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GT-GGGATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAGT-TGAT-T------TAATAA---T-TCCTTGCCCTTGTT--C-T-ATG-CACTTTT-AGT-G-TA-TCAT-AAACTC-----AT--GCC-T-ATATTTA-GC-TGGTC-ACATGACTC-AAAGCA-CGTG-ATGAT----TCA-A--TTTTAT-G-T-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--AT--TA--C-AACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131058                     : ATACAGAA-AT-T-TTTGGG--TCTC-C-C-T-ATAGAAAAA-TGT-ATAAA-GT-AGGATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TGATAA---T-TCCTTATACAAATG--CAT-ATG-CACTTTT-AGT-G-CA-TCAT-AAACTC-----AT--GCC-A-ATATTTA-GC-TGGTC-ACATGACTC-AAAGCA-CGTG-ATGAT----TCA-A--TTTTAT-G-T-GACC-A--------TG-CGATTGT-C--TTGCCT-CGC-ATGT--TGAACC--AT--TG--C-TACAA-TAGG-TGT-A-T-TATTTGTGT-TCAATTTTTAATT
gi|131059                     : ATAAACAC-AT-A-TTTGGG--TCTC-C-C-T-ACAGAAAAA-TGT-GTGA--GT-AGGATTT--GTTTT---C-TAAAAGTTG-CATTAA--AT-ACAAAATGAT-T------TAATAA---T-TCTTTGCCCTTGTG--C-T-ATG-CACTTTT-AGT-G-CA-TCAT-AAACTC-----AT--GTC-A-ATATTTA-GC-TGGT--ACATGA-TC-AAAGCA-CGTG-ATGAT----TCA----TTTTAT-G-T-GACC-A--------TG-CGATTGC-C--TTGACT-CGC-ATCT--CGAACT--AT--TA--C-TACAA-TAGA-TGT-A-T-CAATTGTGT-TTAATTTT-AATT
gi|131060                     : ATACAGAC-AT-TGTTTGGGGGTCTCGC-C-T-ACCAAAAAAATGTTGTAAAAGT-AGGATTT--GTTTTTTTC-CAAAAGTTG-CAATGAGAAT-ACAAT-TGCT-G------TGATAA---T-TCCTTGCCCTTGGC--T-A-ATG--ACTTT--AGTAG-TA-TCAT-AAACTC-----AT--GCC-T-ATATTTAAGC-TGGTC-ACATGACTC-AAAGCA-CGTG-ATGAT----TCG-A--TTTTAT-G-T-GACC-A--------TG-CGATTGC-CGGTGACTT-CAC-ATGT----AACC--AT--TA--C-TACAATTAGATTGT-A-T-CAGTTGTGT-TTAATTTTTATTT
gi|131061                     : ATACAGAC-AT-T-TTTGGG--CTTC-C-C-T-ATAGAAAA-ATGT-GTAAA-AT-AGGATTT--GTTTT---C-CATAAGTTG-CTTTGA--AT-ACAGT-TGAT-TTAGGCCTAACAA---T-TCCTTGCC--------C-T-ATG-CACTTTT-AGT-G-TA-TCAT-CAACTT-----AT--GCC-T-ATATATA-GC-TGGTC-ACA----------------TG-ATGAT----TTC-A--CTTTAT-G-G-GACC-A--------TG-CGATTGT-C--TTGCAT-CGC-ATGT--TGAA---------A--C------------TGT-G-T-CAGTTGTGT-TTAATTTTTAATT
gi|131063                     : ATACAGAC-AT-T-TTGGGG--GTTC-C-C-TAACAG-AAAAATGT-GTAAA-GT--AGATTT--GTTTT---TACAAA--T---CA-TGA--AT-ACAAT-TGAT-T------TAATAA---CATTCTTG-CCTTGTT--C-TAATG-CAC-TTT-AG--G-TA-TCAT--AACTC-----ATC-GCC-T-ATATTTA-A--TGATC-ACATGACTC-AAAGCA-CGTG-ATGAT----TCA-ATCTTTTATGG-T-G-CC-A--------TGCCGATT---C--TTGCCT-CGC-ATGT--TG-ATC--AT--TA--C-TAC-A-TA-A-TG--A-T-CAGTTGTTTCTTAATTTTTAAT
gi|131062                     : ATACAGAC-AT-T-TTGGGG--TTTC-C---T-ATAGAAAAT-TGT-GTAAA-GT-GGGGTTT--GATTT---C-CATAAGTTG-CACGGA--AT-ACAAT-TGAT-T------TGATAA---T-CCCTTG-CCTTATT----------CACATTA-AGT-G-TA-TCAT-AAAATC-----AT--GCC-T-ATAT-------------ACATAACTC-A-------GTG-ATGAT----TTA-A--TTTTAT-G-T-GACC-A---------------TGC-C--TTGCCT-CGC-ATGT--TTAACC--AT--TA--C-TGC-A-TAAC-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131064                     : ATAGAGACCAT-T-TTGGTG--T-TC-C-C-T-ACA---AAAATGT-GTAAA-GTAGGGATTT--GTTTTT--C-CAAAAGTTG-CATTCA--AT--CAAT-TGCT-T------TAATAAC--T-TCCTT--CCTTGTG--C-T-ATG-CACTTTTTAGT-G-TAATCAT-AC-CTCGGTGCAT--GCT-T-ATATTTA-GC-TGGCC-A-ATGACTC-AAAGAA--GTG-GTGAT----TCAGA--TTTTAT-G-T-GAC--A--------TG-CGATTGC----TTGACT-CGC--TGTCTTGAACC---T--T---C-TACAA-TAGG-T-T-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131065                     : ATACAAAA-ATGT-TTTGTG--TCTC-C-C-T-ACAGAACAAATGT-GTAAA-GT-AGGATTTG-GTTTT---C-AAAAAGCTGTCATTTA--ATAACAAT-TGATGT------TAATAA---T-T--TTGCCCTTAATGGT-A-ATGTCA-TTTT-AGT-G-TA-TCATAAAATTC-----AT--GTC-TAATATTTAGGC-T-GTCAAGATGACTC-AAAGCA-CGTGAATGATATGGCAA-A--TTTTAT-G-TGGACG-AATTTAGATTG-CGATTGC-C--TTGCCTCCGCAATGG--TG-ACC--ATACTAACT-AACAA-TAGACTGC-AGT-CAGTTGTGT-TTAATTTTTAATT
gi|131066                     : ATACAGGA-AT-T-TTTGGG--TCTC-A---T-ACCGTAAAA-TGT-GAAAA-GT-AGGATAT--GTTTT---C-CAAATGTTG-CATTCA--AT-ACAAT-TGAT-T------TGATAA---T-TC
gi|131067                     :  TACAGAC-AT-T-TTTGGG--GTTC-C-C-T-ATAGGAAAA-TGT-GTAAA-CT-ATGATTT--GTTT----C-CATAAGTTC-CATTGA--AT-AATAT-TGAT-T------CAACAA---T-TCCTTGCCCTTGCC--T-T-ATG-CACTTTT-AGT-G-TA-TCAT-AAACTC-----AT--GCC-T-ATATTTA-GC-TGGTC-ACATGACCC-AAAGCA-CGTG-ATGAT----TCC-A--CTTTAT-G-T-GACC-A--------TG-CAATTGC-C--TTGCCT-CGC-ATGT--TGAAAC--AT--TA--C-TACAA-TAAA-TGT-A-T-CACTTGTGT-TTAATTTTTAATT
gi|131068                     :       AC-AT-A-TTTGGG--TCTC-CTC-T-A---AGAAAATGT-GTGA---T-AGGATT---GTTTC-------AAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAAGTCT-CCCTTG---TTGTT--C-T-ATG-CACTTTT-AGT-G-CA-TCAT-AAACTA-----GT--GCC-T-ATATTCA-GC-TGGTC-ACATGACCC-AGAACA-CGTG-ATGAT----TCA-A--TTTTGT-G-T-GACC-A--------TG-CGATTGC-C--CTGACC-CGC-ATGT--TGAAAC--AT--TA--C-TACCA-TAGA-TGC-C-T-CAGATGGGG-TTAATTTTTTATT
gi|131069                     :       AC-AT-T-TT--GA--TGTC-C-CAT-ACAGAGAAA-CGC-GTAAT-GT-GCG-TTTCGGTTTT---C-CATAAGTCG-CATAAA--AT----------------------TAA---T-TCCC-ACCATTTTC--CAT-ATA-CACTTTA-AAT-GCTAGTCAT-AAACTC-----ATT-GCCCT-ATATTTA-GCTTAGTA-AAGTGATTC-
gi|131070                     :                                                                                                                                                                     A-TCAT-AAAC-C-----ATCTGTC-T-ATGATTA-GA-TGGTC-ACATGACTCAAAAGCACCGTG-A--GT----TC--A--TTTTAT-GTT-GACA-A--------TG-CGATTGCAC--TTGACT-CGC-ATGT--TGAACT--AT--TA--C--ACAA-TAGA-TGT-A-T-CAGTTGTG--TTAATTTT
gi|131071                     :                                                                                                                                                                                  -----AT--GCC-T-ATAATTA-GC-TGGTC-ACATGACTC-AACACA-GGTG-ATGAT----TCA-A--TTTTAT-G-T-GACC-A--------TG-TGATTGC-C--TTACCT-CGC-ATGT--TGAACC--AT--TA--C-TACAA-CAGA-TTT-A-T-CAGTTGTGT-TTAATTTTGAATT
gi|131072                     :                                                                                                                                                                                            CC-T-ATGATTA-GC-TGGTC-A--TGAATC-AGAGAA-CGTG-ATGAT----TCC-A--TTTTAT-G-T-GACCAA--------TGCCGATTGC-C---TGACT-CTC-ATGT--TGAACCAAAT--TA--CTAACGA-TAGA-TGTAA-T-CAGTTTGGT-TCAATTTTTAATT
gi|131073                     :                                                                                                                                                                                                     TTA-GC-TGGTC-A-ATGACTC-AAAGCA-CGTG-A-GAT----TCA-A--TTTTAT-G-T-GACC-A--------TG-CGATTGC----TTGCCT-CGC-ATGT--TGAACC--AT--TA--C-AACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131074                     :                                                                                                                                                                                                                    ATGACTC-AAGGCA-AGTG-ATGAT----TCA-T--TTTTAT-G-C-GACC-A--------TG-CGATAGC-A--TTGCCT-TA----GC--TAGGCC---T---------ACAA-TAAA-TGT-A-TCCAATTGTGT-TTCATTTT-AATT
gi|131075                     :                                                                                                                                                                                                                                                                                                TGCTT-AGC-ATGT--TGAAAC--AT--TA--C-TACAA-TAAA-AGT-A-T-CAGTTGTGT-TTCATTTTTAATT





Alignments
lowQualScore                  :                                           1                                                                                             111111111                                                                                                                                                                                                                              
lowQualScore                  :         3  3 3  0   44 0  3 333 3         3   3    33     3    77     888 3         3      44  3     3    3 888888      888 3      1 2  111111111 3 3  3       3   3 3  6    3    44  77777 2 2 2   2       5  2     2 2          2    2   2     5555   4444      2  5    2 99999999  5       3333      2   2    33      33      88888  0 2    4   2 2 2         2             
lowQualScore                  :         .  . .  .   .. .  . ... .         .   .    ..     .    ..     ... .         .      ..  .     .    . ......      ... .      . .  ......... . .  .       .   . .  .    .    ..  ..... . . .   .       .  .     . .          .    .   .     ....   ....      .  .    . ........  .       ....      .   .    ..      ..      .....  . .    .   . . .         .             
lowQualScore                  :         1  1 1  3   22 7  1 888 1         6   1    66     1    33     555 1         1      22  1     1    1 888888      555 1      8 5  888888888 3 3  3       3   3 3  2    1    22  11111 9 9 7   7       0  5     5 5          5    5   5     3333   7777      5  0    5 11111111  0       8888      4   4    22      22      22222  5 4    7   4 4 4         4             
consensus                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
Reference ( family-874 )      : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131057                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTGGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAGT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTTC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACA-----ACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131058                     : ATACAGAA-AT-T-TTTGGG--TCTC-C-C-T-ATAGAAAAA-TGT-ATAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TGATAA---T-TCCTTATACAA----ATGCAT-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TC-----A-T-G-CCA-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGT-C--TTGCCT-CGC-ATGT--TGAACC--ATTGCT-----ACAA-TAGG-TGT-A-T-TATTTGTGT-TCAATTTTTAATT
gi|131059                     : ATAAACAC-AT-A-TTTGGG--TCTC-C-C-T-ACAGAAAAA-TGT-GTGA--GTAGG-ATTT--GTTTT---C-TAAAAGTTG-CATTAA--AT-ACAAAATGAT-T------TAATAA---T-TCTTTGCCCTT----GTGC-T-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TC-----A-T-G-TCA-ATATTTA-GC-TGGT--ACATGA-TCAAA-GCAC-GTG-ATGAT----TCA----TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGACT-CGC-ATCT--CGAACT--ATTACT-----ACAA-TAGA-TGT-A-T-CAATTGTGT-TTAA-TTTTAATT
gi|131060                     : ATACAGAC-AT-TGTTTGGGGGTCTCGC-C-T-ACCAAAAAAATGTTGTAAAAGTAGG-ATTT--GTTTTTTTC-CAAAAGTTG-CAATGAGAAT-ACAAT-TGCT-G------TGATAA---T-TCCTTGCCCTT----G-GC-T-AATG--ACTTT--AGTAG-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTAAGC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCG-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-CGGTGACTT-CAC-ATGT----AACC--ATTACT-----ACAATTAGATTGT-A-T-CAGTTGTGT-TTAATTTTTATTT
gi|131061                     : ATACAGAC-AT-T-TTTGGG--CTTC-C-C-T-ATAGAAAA-ATGT-GTAAA-ATAGG-ATTT--GTTTT---C-CATAAGTTG-CTTTGA--AT-ACAGT-TGAT-TTAGGCCTAACAA---T-TCCTTGCC----------C-T-A-TG-CACTTTT-AGT-G-TA-TCAT-CAAC--TT-----A-T-G-CCT-ATATATA-GC-TGGTC-ACA----------------TG-ATGAT----TTC-A--CTTTAT-GG-GACC-A--------TG-CGATTGT-C--TTGCAT-CGC-ATGT--TGAA-------AC----------------TGT-G-T-CAGTTGTGT-TTAATTTTTAATT
gi|131062                     : ATACAGAC-AT-T-TTGGGG--TTTC-C---T-ATAGAAAAT-TGT-GTAAA-GTGGG-GTTT--GATTT---C-CATAAGTTG-CACGGA--AT-ACAAT-TGAT-T------TGATAA---T-CCCTTGCC----------T-T-A-TT-CACATTA-AGT-G-TA-TCAT-AAAA--TC-----A-T-G-CCT-ATAT-------------ACATAACTCA--------GTG-ATGAT----TTA-A--TTTTAT-GT-GACC-A---------------TGC-C--TTGCCT-CGC-ATGT--TTAACC--ATTACT-----GC-A-TAAC-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131063                     : ATACAGAC-AT-T-TTGGGG--GTTC-C-C-TAACAG-AAAAATGT-GTAAA-GTA-G-ATTT--GTTTT---TACAAA--T---CA-TGA--AT-ACAAT-TGAT-T------TAATAA---CATTCTTG-CCTT----GTTC-TAA-TG-CAC-TTT-AG--G-TA-TCAT--AAC--TC-----A-TCG-CCT-ATATTTA-A--TGATC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-ATCTTTTATGGT-G-CC-A--------TGCCGATT---C--TTGCCT-CGC-ATGT--TG-ATC--ATTACT-----AC-A-TA-A-TG--A-T-CAGTTGTTTCTTAATTTTTAAT
gi|131064                     : ATAGAGACCAT-T-TTGGTG--T-TC-C-C-T-ACA---AAAATGT-GTAAA-GTAGGGATTT--GTTTTT--C-CAAAAGTTG-CATTCA--AT--CAAT-TGCT-T------TAATAAC--T-TCCTT--CCTT----GTGC-T-A-TG-CACTTTTTAGT-G-TAATCAT-AC-C--TCGGTGCA-T-G-CTT-ATATTTA-GC-TGGCC-A-ATGACTCAAA-GAA--GTG-GTGAT----TCAGA--TTTTAT-GT-GAC--A--------TG-CGATTGC----TTGACT-CGC--TGTCTTGAACC---TT-CT-----ACAA-TAGG-T-T-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131065                     : ATACAAAA-ATGT-TTTGTG--TCTC-C-C-T-ACAGAACAAATGT-GTAAA-GTAGG-ATTTG-GTTTT---C-AAAAAGCTGTCATTTA--ATAACAAT-TGATGT------TAATAA---T-T--TTGCCCTTAATGGTA----A-TGTCA-TTTT-AGT-G-TA-TCATAAAAT--TC-----A-T-G-TCTAATATTTAGGC-T-GTCAAGATGACTCAAA-GCAC-GTGAATGATATGGCAA-A--TTTTAT-GTGGACG-AATTTAGATTG-CGATTGC-C--TTGCCTCCGCAATGG--TG-ACC--A-TACTAACTAACAA-TAGACTGC-AGT-CAGTTGTGT-TTAATTTTTAATT
gi|131066                     : ATACAGGA-AT-T-TTTGGG--TCTC-A---T-ACCGTAAAA-TGT-GAAAA-GTAGG-ATAT--GTTTT---C-CAAATGTTG-CATTCA--AT-ACAAT-TGAT-T------TGATAA---T-TC
gi|131067                     :  TACAGAC-AT-T-TTTGGG--GTTC-C-C-T-ATAGGAAAA-TGT-GTAAA-CTATG-ATTT--GTTT----C-CATAAGTTC-CATTGA--AT-AATAT-TGAT-T------CAACAA---T-TCCTTGCCCTT----GCCT-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACCCAAA-GCAC-GTG-ATGAT----TCC-A--CTTTAT-GT-GACC-A--------TG-CAATTGC-C--TTGCCT-CGC-ATGT--TGAAAC--ATTACT-----ACAA-TAAA-TGT-A-T-CACTTGTGT-TTAATTTTTAATT
gi|131068                     :       AC-AT-A-TTTGGG--TCTC-CTC-T-A---AGAAAATGT-GTGA---TAGG-ATT---GTTTC-------AAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAAGTCT-CCCTTG---TT----GTTC-T-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TA-----G-T-G-CCT-ATATTCA-GC-TGGTC-ACATGACCCAGA-ACAC-GTG-ATGAT----TCA-A--TTTTGT-GT-GACC-A--------TG-CGATTGC-C--CTGACC-CGC-ATGT--TGAAAC--ATTACT-----ACCA-TAGA-TGC-C-T-CAGATGGGG-TTAATTTTTTATT
gi|131069                     :       AC-AT-T-TT--GA--TGTC-C-CAT-ACAGAGAAA-CGC-GTAAT-GTGCG--TTTCGGTTTT---C-CATAAGTCG-CAT--A--A----AAT----------------TAA---T-TCC-CACCATT----TTCCAT-A-TA-CACTTTA-AAT-GCTAGTCAT-AAAC--TC-----ATT-GCCCT-ATATTTA-GCTTAGTA-AAGTGATTC
gi|131070                     :                                                                                                                                                                        A-TCAT-AAACCATC-------T-G-TCT-ATGATTA-GA-TGGTC-ACATGACTCAAAAGCACCGTG-A--GT----TCA----TTTTAT-GTTGACA-A--------TG-CGATTGCAC--TTGACT-CGC-ATGT--TGAACT--ATTAC------ACAA-TAGA-TGT-A-T-CAGTTGTG--TTAATTTT
gi|131071                     :                                                                                                                                                                                       -----A-T-G-CCT-ATAATTA-GC-TGGTC-ACATGACTCAAC-ACAG-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-TGATTGC-C--TTACCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-CAGA-TTT-A-T-CAGTTGTGT-TTAATTTTGAATT
gi|131072                     :                                                                                                                                                                                                 -CCT-ATGATTA-GC-TGGTC-A--TGAATCAGA-GAAC-GTG-ATGAT----TCC-A--TTTTAT-GT-GACCAA--------TGCCGATTGC-C---TGACT-CTC-ATGT--TGAACCAAATTACTA----ACGA-TAGA-TGTAA-T-CAGTTTGGT-TCAATTTTTAATT
gi|131073                     :                                                                                                                                                                                                          TTA-GC-TGGTC-A-ATGACTCAAA-GCAC-GTG-A-GAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC----TTGCCT-CGC-ATGT--TGAACC--ATTACA-----ACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131074                     :                                                                                                                                                                                                                         ATGACTCAAG-GCAA-GTG-ATGAT----TCA-T--TTTTAT-GC-GACC-A--------TG-CGATAGC-A--TTGCCT-TA----GC--TAGGC-------CT-----ACAA-TAAA-TGT-A-TCCAATTGTGT-TTCA-TTTTAATT
gi|131075                     :                                                                                                                                                                                                                                                                                                    TGCTT-AGC-ATGT--TGAAAC--ATTACT-----ACAA-TAAA-AGT-A-T-CAGTTGTGT-TTCATTTTTAATT





Alignments
lowQualScore                  :                                           1                                                                                             111111111                                                                                                                                                                                                                              
lowQualScore                  :         3  3 3  0   44 0  3 333 3         3   3    33     3    77     888 3         3      44  3     3    3 888888      888 3      1 2  111111111 3 3  3       3   3 3  6    3    44  77777 2 2 2   2       5  2     2 2          2    2   2     5555   4444      2  5    2 99999999  5       3333      2   2    33      33      88888  0 2    4   2 2 2         2             
lowQualScore                  :         .  . .  .   .. .  . ... .         .   .    ..     .    ..     ... .         .      ..  .     .    . ......      ... .      . .  ......... . .  .       .   . .  .    .    ..  ..... . . .   .       .  .     . .          .    .   .     ....   ....      .  .    . ........  .       ....      .   .    ..      ..      .....  . .    .   . . .         .             
lowQualScore                  :         1  1 1  3   22 7  1 888 1         6   1    66     1    33     555 1         1      22  1     1    1 888888      555 1      8 5  888888888 3 3  3       3   3 3  2    1    22  11111 9 9 7   7       0  5     5 5          5    5   5     3333   7777      5  0    5 11111111  0       8888      4   4    22      22      22222  5 4    7   4 4 4         4             
consensus                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
Reference ( family-874 )      : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131057                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTGGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAGT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTTC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACA-----ACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131058                     : ATACAGAA-AT-T-TTTGGG--TCTC-C-C-T-ATAGAAAAA-TGT-ATAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TGATAA---T-TCCTTATACAA----ATGCAT-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TC-----A-T-G-CCA-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGT-C--TTGCCT-CGC-ATGT--TGAACC--ATTGCT-----ACAA-TAGG-TGT-A-T-TATTTGTGT-TCAATTTTTAATT
gi|131059                     : ATAAACAC-AT-A-TTTGGG--TCTC-C-C-T-ACAGAAAAA-TGT-GTGA--GTAGG-ATTT--GTTTT---C-TAAAAGTTG-CATTAA--AT-ACAAAATGAT-T------TAATAA---T-TCTTTGCCCTT----GTGC-T-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TC-----A-T-G-TCA-ATATTTA-GC-TGGT--ACATGA-TCAAA-GCAC-GTG-ATGAT----TCA----TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGACT-CGC-ATCT--CGAACT--ATTACT-----ACAA-TAGA-TGT-A-T-CAATTGTGT-TTAA-TTTTAATT
gi|131060                     : ATACAGAC-AT-TGTTTGGGGGTCTCGC-C-T-ACCAAAAAAATGTTGTAAAAGTAGG-ATTT--GTTTTTTTC-CAAAAGTTG-CAATGAGAAT-ACAAT-TGCT-G------TGATAA---T-TCCTTGCCCTT----G-GC-T-AATG--ACTTT--AGTAG-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTAAGC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCG-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-CGGTGACTT-CAC-ATGT----AACC--ATTACT-----ACAATTAGATTGT-A-T-CAGTTGTGT-TTAATTTTTATTT
gi|131061                     : ATACAGAC-AT-T-TTTGGG--CTTC-C-C-T-ATAGAAAA-ATGT-GTAAA-ATAGG-ATTT--GTTTT---C-CATAAGTTG-CTTTGA--AT-ACAGT-TGAT-TTAGGCCTAACAA---T-TCCTTGCC----------C-T-A-TG-CACTTTT-AGT-G-TA-TCAT-CAAC--TT-----A-T-G-CCT-ATATATA-GC-TGGTC-ACA----------------TG-ATGAT----TTC-A--CTTTAT-GG-GACC-A--------TG-CGATTGT-C--TTGCAT-CGC-ATGT--TGAA-------AC----------------TGT-G-T-CAGTTGTGT-TTAATTTTTAATT
gi|131062                     : ATACAGAC-AT-T-TTGGGG--TTTC-C---T-ATAGAAAAT-TGT-GTAAA-GTGGG-GTTT--GATTT---C-CATAAGTTG-CACGGA--AT-ACAAT-TGAT-T------TGATAA---T-CCCTTGCC----------T-T-A-TT-CACATTA-AGT-G-TA-TCAT-AAAA--TC-----A-T-G-CCT-ATAT-------------ACATAACTCA--------GTG-ATGAT----TTA-A--TTTTAT-GT-GACC-A---------------TGC-C--TTGCCT-CGC-ATGT--TTAACC--ATTACT-----GC-A-TAAC-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131063                     : ATACAGAC-AT-T-TTGGGG--GTTC-C-C-TAACAG-AAAAATGT-GTAAA-GTA-G-ATTT--GTTTT---TACAAA--T---CA-TGA--AT-ACAAT-TGAT-T------TAATAA---CATTCTTG-CCTT----GTTC-TAA-TG-CAC-TTT-AG--G-TA-TCAT--AAC--TC-----A-TCG-CCT-ATATTTA-A--TGATC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-ATCTTTTATGGT-G-CC-A--------TGCCGATT---C--TTGCCT-CGC-ATGT--TG-ATC--ATTACT-----AC-A-TA-A-TG--A-T-CAGTTGTTTCTTAATTTTTAAT
gi|131064                     : ATAGAGACCAT-T-TTGGTG--T-TC-C-C-T-ACA---AAAATGT-GTAAA-GTAGGGATTT--GTTTTT--C-CAAAAGTTG-CATTCA--AT--CAAT-TGCT-T------TAATAAC--T-TCCTT--CCTT----GTGC-T-A-TG-CACTTTTTAGT-G-TAATCAT-AC-C--TCGGTGCA-T-G-CTT-ATATTTA-GC-TGGCC-A-ATGACTCAAA-GAA--GTG-GTGAT----TCAGA--TTTTAT-GT-GAC--A--------TG-CGATTGC----TTGACT-CGC--TGTCTTGAACC---TT-CT-----ACAA-TAGG-T-T-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131065                     : ATACAAAA-ATGT-TTTGTG--TCTC-C-C-T-ACAGAACAAATGT-GTAAA-GTAGG-ATTTG-GTTTT---C-AAAAAGCTGTCATTTA--ATAACAAT-TGATGT------TAATAA---T-T--TTGCCCTTAATGGTA----A-TGTCA-TTTT-AGT-G-TA-TCATAAAAT--TC-----A-T-G-TCTAATATTTAGGC-T-GTCAAGATGACTCAAA-GCAC-GTGAATGATATGGCAA-A--TTTTAT-GTGGACG-AATTTAGATTG-CGATTGC-C--TTGCCTCCGCAATGG--TG-ACC--A-TACTAACTAACAA-TAGACTGC-AGT-CAGTTGTGT-TTAATTTTTAATT
gi|131066                     : ATACAGGA-AT-T-TTTGGG--TCTC-A---T-ACCGTAAAA-TGT-GAAAA-GTAGG-ATAT--GTTTT---C-CAAATGTTG-CATTCA--AT-ACAAT-TGAT-T------TGATAA---T-TC
gi|131067                     :  TACAGAC-AT-T-TTTGGG--GTTC-C-C-T-ATAGGAAAA-TGT-GTAAA-CTATG-ATTT--GTTT----C-CATAAGTTC-CATTGA--AT-AATAT-TGAT-T------CAACAA---T-TCCTTGCCCTT----GCCT-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACCCAAA-GCAC-GTG-ATGAT----TCC-A--CTTTAT-GT-GACC-A--------TG-CAATTGC-C--TTGCCT-CGC-ATGT--TGAAAC--ATTACT-----ACAA-TAAA-TGT-A-T-CACTTGTGT-TTAATTTTTAATT
gi|131068                     :       AC-AT-A-TTTGGG--TCTC-CTC-T-A---AGAAAATGT-GTGA---TAGG-ATT---GTTTC-------AAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAAGTCT-CCCTTG---TT----GTTC-T-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TA-----G-T-G-CCT-ATATTCA-GC-TGGTC-ACATGACCCAGA-ACAC-GTG-ATGAT----TCA-A--TTTTGT-GT-GACC-A--------TG-CGATTGC-C--CTGACC-CGC-ATGT--TGAAAC--ATTACT-----ACCA-TAGA-TGC-C-T-CAGATGGGG-TTAATTTTTTATT
gi|131069                     :       AC-AT-T-TT--GA--TGTC-C-CAT-ACAGAGAAA-CGC-GTAAT-GTGCG--TTTCGGTTTT---C-CATAAGTCG-CAT--A--A----AAT----------------TAA---T-TCC-CACCATT----TTCCAT-A-TA-CACTTTA-AAT-GCTAGTCAT-AAAC--TC-----ATT-GCCCT-ATATTTA-GCTTAGTA-AAGTGATTC
gi|131070                     :                                                                                                                                                                        A-TCAT-AAACCATC-------T-G-TCT-ATGATTA-GA-TGGTC-ACATGACTCAAAAGCACCGTG-A--GT----TCA----TTTTAT-GTTGACA-A--------TG-CGATTGCAC--TTGACT-CGC-ATGT--TGAACT--ATTAC------ACAA-TAGA-TGT-A-T-CAGTTGTG--TTAATTTT
gi|131071                     :                                                                                                                                                                                       -----A-T-G-CCT-ATAATTA-GC-TGGTC-ACATGACTCAAC-ACAG-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-TGATTGC-C--TTACCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-CAGA-TTT-A-T-CAGTTGTGT-TTAATTTTGAATT
gi|131072                     :                                                                                                                                                                                                 -CCT-ATGATTA-GC-TGGTC-A--TGAATCAGA-GAAC-GTG-ATGAT----TCC-A--TTTTAT-GT-GACCAA--------TGCCGATTGC-C---TGACT-CTC-ATGT--TGAACCAAATTACTA----ACGA-TAGA-TGTAA-T-CAGTTTGGT-TCAATTTTTAATT
gi|131073                     :                                                                                                                                                                                                          TTA-GC-TGGTC-A-ATGACTCAAA-GCAC-GTG-A-GAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC----TTGCCT-CGC-ATGT--TGAACC--ATTACA-----ACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131074                     :                                                                                                                                                                                                                         ATGACTCAAG-GCAA-GTG-ATGAT----TCA-T--TTTTAT-GC-GACC-A--------TG-CGATAGC-A--TTGCCT-TA----GC--TAGGC-------CT-----ACAA-TAAA-TGT-A-TCCAATTGTGT-TTCA-TTTTAATT
gi|131075                     :                                                                                                                                                                                                                                                                                                    TGCTT-AGC-ATGT--TGAAAC--ATTACT-----ACAA-TAAA-AGT-A-T-CAGTTGTGT-TTCATTTTTAATT


blockSeqs                     :         C  G G      GG    G TC  A         A   T    AA     G    CG     TTT A         T      GA  A     A    G TAGGCC      GTC A      T C  AATGGTA   A A  T       T   A C  A    A    CA  GGTGC T C C   A       A  T     A C          A    C   A     ATGG   ATC       G  G    A ATTTAGAT  C       CGG       C   A    CT      AA      AACTA    T    T   A G C         C
blockSeqs                     :         .  . .      .     . CA  .         A   .    A      .    G      T   .         .      .   .     .    . .           C   .      C C  ATGCA     . .  .       .   . .  G    .    .   .     . . .   .       G  .     . C          .    .   .     .      GA        .  T    . .         C       AC        .   .    .       .       A        .    C   . . .         .
blockSeqs                     :         .  . .      .     . C   .         A   .    A      .    .      .   .         .      .   .     .    . .           .   .      C C  TTCCA     . .  .       .   . .  .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . C   .         A   .    A      .    .      .   .         .      .   .     .    . .           .   .      C C  GTGC      . .  .       .   . .  .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . C   .         A   .    A      .    .      .   .         .      .   .     .    . .           .   .      C C  GTTC      . .  .       .   . .  .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . C   .         A   .    A      .    .      .   .         .      .   .     .    . .           .   .      C C  GTGC      . .  .       .   . .  .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . C   .         .   .    A      .    .      .   .         .      .   .     .    . .           .   .      C C  GCCT      . .  .       .   . .  .    .    .   .     . . .   .       .  .     . G          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . C   .         .   .    A      .    .      .   .         .      .   .     .    . .           .   .      C A  GTTC      . .  .       .   . .  .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . C   .         .   .    A      .    .      .   .         .      .   .     .    . .           .   .      . .  GGC       . .  .       .   . .  .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . C   .         .   .    T      .    .      .   .         .      .   .     .    . .           .   .      . .  C         . .  .       .   . .  .    .    .   .     . . .   .       .  .     . A          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . .   .         .   .    .      .    .      .   .         .      .   .     .    . .           .   .      . .  T         . .  .       .   . .  .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :         .  . .      .     . .   .         .   .    .      .    .      .   .         .      .   .     .    . .           .   .                                           .    .    .   .     . . .   .       .  .     . C          .    .   .     .      A         .  .    . .         .       C         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :                                                                                                                                                                                       .     . . .   .       .  .     . .          .    .   .     .      T         .  .    . .         .       A         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :                                                                                                                                                                                                 .   .       .  .     . .          .    .   .     .      .         .  .    . .         .       .         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :                                                                                                                                                                                                             .  .     . .          .    .   .     .      .         .  .    . .         .       .         .   .    .       .       .        .    .   . . .         .
blockSeqs                     :                                                                                                                                                                                                                                                                                                         .   .    .       .       .        .    .   . . .         .


blockSeqCons                  : 
originalCons                  : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
finalCons                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT





Alignments
lowQualScore                  :                                           1                                                                                             111111111                                                                                                                                                                                                                              
lowQualScore                  :         3  3 3  0   44 0  3 333 3         3   3    33     3    77     888 3         3      44  3     3    3 888888      888 3      1 2  111111111 3 3  3       3   3 3  6    3    44  77777 2 2 2   2       5  2     2 2          2    2   2     5555   4444      2  5    2 99999999  5       3333      2   2    33      33      88888  0 2    4   2 2 2         2             
lowQualScore                  :         .  . .  .   .. .  . ... .         .   .    ..     .    ..     ... .         .      ..  .     .    . ......      ... .      . .  ......... . .  .       .   . .  .    .    ..  ..... . . .   .       .  .     . .          .    .   .     ....   ....      .  .    . ........  .       ....      .   .    ..      ..      .....  . .    .   . . .         .             
lowQualScore                  :         1  1 1  3   22 7  1 888 1         6   1    66     1    33     555 1         1      22  1     1    1 888888      555 1      8 5  888888888 3 3  3       3   3 3  2    1    22  11111 9 9 7   7       0  5     5 5          5    5   5     3333   7777      5  0    5 11111111  0       8888      4   4    22      22      22222  5 4    7   4 4 4         4             
consensus                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
Reference ( family-874 )      : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTNC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-TAGA-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131057                     : ATACAGAC-AT-T-TTTGGG--TCTC-C-C-T-ACAGAAAAAATGT-GTAAA-GTGGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAGT-TGAT-T------TAATAA---T-TCCTTGCCCTT----GTTC-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGCCT-CGC-ATGT--TGAACC--ATTACA-----ACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131058                     : ATACAGAA-AT-T-TTTGGG--TCTC-C-C-T-ATAGAAAAA-TGT-ATAAA-GTAGG-ATTT--GTTTT---C-CAAAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TGATAA---T-TCCTTATACAA----ATGCAT-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TC-----A-T-G-CCA-ATATTTA-GC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGT-C--TTGCCT-CGC-ATGT--TGAACC--ATTGCT-----ACAA-TAGG-TGT-A-T-TATTTGTGT-TCAATTTTTAATT
gi|131059                     : ATAAACAC-AT-A-TTTGGG--TCTC-C-C-T-ACAGAAAAA-TGT-GTGA--GTAGG-ATTT--GTTTT---C-TAAAAGTTG-CATTAA--AT-ACAAAATGAT-T------TAATAA---T-TCTTTGCCCTT----GTGC-T-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TC-----A-T-G-TCA-ATATTTA-GC-TGGT--ACATGA-TCAAA-GCAC-GTG-ATGAT----TCA----TTTTAT-GT-GACC-A--------TG-CGATTGC-C--TTGACT-CGC-ATCT--CGAACT--ATTACT-----ACAA-TAGA-TGT-A-T-CAATTGTGT-TTAA-TTTTAATT
gi|131060                     : ATACAGAC-AT-TGTTTGGGGGTCTCGC-C-T-ACCAAAAAAATGTTGTAAAAGTAGG-ATTT--GTTTTTTTC-CAAAAGTTG-CAATGAGAAT-ACAAT-TGCT-G------TGATAA---T-TCCTTGCCCTT----G-GC-T-AATG--ACTTT--AGTAG-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTAAGC-TGGTC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCG-A--TTTTAT-GT-GACC-A--------TG-CGATTGC-CGGTGACTT-CAC-ATGT----AACC--ATTACT-----ACAATTAGATTGT-A-T-CAGTTGTGT-TTAATTTTTATTT
gi|131061                     : ATACAGAC-AT-T-TTTGGG--CTTC-C-C-T-ATAGAAAA-ATGT-GTAAA-ATAGG-ATTT--GTTTT---C-CATAAGTTG-CTTTGA--AT-ACAGT-TGAT-TTAGGCCTAACAA---T-TCCTTGCC----------C-T-A-TG-CACTTTT-AGT-G-TA-TCAT-CAAC--TT-----A-T-G-CCT-ATATATA-GC-TGGTC-ACA----------------TG-ATGAT----TTC-A--CTTTAT-GG-GACC-A--------TG-CGATTGT-C--TTGCAT-CGC-ATGT--TGAA-------AC----------------TGT-G-T-CAGTTGTGT-TTAATTTTTAATT
gi|131062                     : ATACAGAC-AT-T-TTGGGG--TTTC-C---T-ATAGAAAAT-TGT-GTAAA-GTGGG-GTTT--GATTT---C-CATAAGTTG-CACGGA--AT-ACAAT-TGAT-T------TGATAA---T-CCCTTGCC----------T-T-A-TT-CACATTA-AGT-G-TA-TCAT-AAAA--TC-----A-T-G-CCT-ATAT-------------ACATAACTCA--------GTG-ATGAT----TTA-A--TTTTAT-GT-GACC-A---------------TGC-C--TTGCCT-CGC-ATGT--TTAACC--ATTACT-----GC-A-TAAC-TGT-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131063                     : ATACAGAC-AT-T-TTGGGG--GTTC-C-C-TAACAG-AAAAATGT-GTAAA-GTA-G-ATTT--GTTTT---TACAAA--T---CA-TGA--AT-ACAAT-TGAT-T------TAATAA---CATTCTTG-CCTT----GTTC-TAA-TG-CAC-TTT-AG--G-TA-TCAT--AAC--TC-----A-TCG-CCT-ATATTTA-A--TGATC-ACATGACTCAAA-GCAC-GTG-ATGAT----TCA-ATCTTTTATGGT-G-CC-A--------TGCCGATT---C--TTGCCT-CGC-ATGT--TG-ATC--ATTACT-----AC-A-TA-A-TG--A-T-CAGTTGTTTCTTAATTTTTAAT
gi|131064                     : ATAGAGACCAT-T-TTGGTG--T-TC-C-C-T-ACA---AAAATGT-GTAAA-GTAGGGATTT--GTTTTT--C-CAAAAGTTG-CATTCA--AT--CAAT-TGCT-T------TAATAAC--T-TCCTT--CCTT----GTGC-T-A-TG-CACTTTTTAGT-G-TAATCAT-AC-C--TCGGTGCA-T-G-CTT-ATATTTA-GC-TGGCC-A-ATGACTCAAA-GAA--GTG-GTGAT----TCAGA--TTTTAT-GT-GAC--A--------TG-CGATTGC----TTGACT-CGC--TGTCTTGAACC---TT-CT-----ACAA-TAGG-T-T-A-T-CAGTTGTGT-TTAATTTTTAATT
gi|131065                     : ATACAAAA-ATGT-TTTGTG--TCTC-C-C-T-ACAGAACAAATGT-GTAAA-GTAGG-ATTTG-GTTTT---C-AAAAAGCTGTCATTTA--ATAACAAT-TGATGT------TAATAA---T-T--TTGCCCTTAATGGTA----A-TGTCA-TTTT-AGT-G-TA-TCATAAAAT--TC-----A-T-G-TCTAATATTTAGGC-T-GTCAAGATGACTCAAA-GCAC-GTGAATGATATGGCAA-A--TTTTAT-GTGGACG-AATTTAGATTG-CGATTGC-C--TTGCCTCCGCAATGG--TG-ACC--A-TACTAACTAACAA-TAGACTGC-AGT-CAGTTGTGT-TTAATTTTTAATT
gi|131066                     : ATACAGGA-AT-T-TTTGGG--TCTC-A---T-ACCGTAAAA-TGT-GAAAA-GTAGG-ATAT--GTTTT---C-CAAATGTTG-CATTCA--AT-ACAAT-TGAT-T------TGATAA---T-TC
gi|131067                     :  TACAGAC-AT-T-TTTGGG--GTTC-C-C-T-ATAGGAAAA-TGT-GTAAA-CTATG-ATTT--GTTT----C-CATAAGTTC-CATTGA--AT-AATAT-TGAT-T------CAACAA---T-TCCTTGCCCTT----GCCT-T-A-TG-CACTTTT-AGT-G-TA-TCAT-AAAC--TC-----A-T-G-CCT-ATATTTA-GC-TGGTC-ACATGACCCAAA-GCAC-GTG-ATGAT----TCC-A--CTTTAT-GT-GACC-A--------TG-CAATTGC-C--TTGCCT-CGC-ATGT--TGAAAC--ATTACT-----ACAA-TAAA-TGT-A-T-CACTTGTGT-TTAATTTTTAATT
gi|131068                     :       AC-AT-A-TTTGGG--TCTC-CTC-T-A---AGAAAATGT-GTGA---TAGG-ATT---GTTTC-------AAAGTTG-CATTGA--AT-ACAAT-TGAT-T------TAATAAGTCT-CCCTTG---TT----GTTC-T-A-TG-CACTTTT-AGT-G-CA-TCAT-AAAC--TA-----G-T-G-CCT-ATATTCA-GC-TGGTC-ACATGACCCAGA-ACAC-GTG-ATGAT----TCA-A--TTTTGT-GT-GACC-A--------TG-CGATTGC-C--CTGACC-CGC-ATGT--TGAAAC--ATTACT-----ACCA-TAGA-TGC-C-T-CAGATGGGG-TTAATTTTTTATT
gi|131069                     :       AC-AT-T-TT--GA--TGTC-C-CAT-ACAGAGAAA-CGC-GTAAT-GTGCG--TTTCGGTTTT---C-CATAAGTCG-CAT--A--A----AAT----------------TAA---T-TCC-CACCATT----TTCCAT-A-TA-CACTTTA-AAT-GCTAGTCAT-AAAC--TC-----ATT-GCCCT-ATATTTA-GCTTAGTA-AAGTGATTC
gi|131070                     :                                                                                                                                                                        A-TCAT-AAACCATC-------T-G-TCT-ATGATTA-GA-TGGTC-ACATGACTCAAAAGCACCGTG-A--GT----TCA----TTTTAT-GTTGACA-A--------TG-CGATTGCAC--TTGACT-CGC-ATGT--TGAACT--ATTAC------ACAA-TAGA-TGT-A-T-CAGTTGTG--TTAATTTT
gi|131071                     :                                                                                                                                                                                       -----A-T-G-CCT-ATAATTA-GC-TGGTC-ACATGACTCAAC-ACAG-GTG-ATGAT----TCA-A--TTTTAT-GT-GACC-A--------TG-TGATTGC-C--TTACCT-CGC-ATGT--TGAACC--ATTACT-----ACAA-CAGA-TTT-A-T-CAGTTGTGT-TTAATTTTGAATT
gi|131072                     :                                                                                                                                                                                                 -CCT-ATGATTA-GC-TGGTC-A--TGAATCAGA-GAAC-GTG-ATGAT----TCC-A--TTTTAT-GT-GACCAA--------TGCCGATTGC-C---TGACT-CTC-ATGT--TGAACCAAATTACTA----ACGA-TAGA-TGTAA-T-CAGTTTGGT-TCAATTTTTAATT
gi|131073                     :                                                                                                                                                                                                          TTA-GC-TGGTC-A-ATGACTCAAA-GCAC-GTG-A-GAT----TCA-A--TTTTAT-GT-GACC-A--------TG-CGATTGC----TTGCCT-CGC-ATGT--TGAACC--ATTACA-----ACAA-TAGA-TGT-A-T-TAGTTGTGT-TTAATTTTCAATT
gi|131074                     :                                                                                                                                                                                                                         ATGACTCAAG-GCAA-GTG-ATGAT----TCA-T--TTTTAT-GC-GACC-A--------TG-CGATAGC-A--TTGCCT-TA----GC--TAGGC-------CT-----ACAA-TAAA-TGT-A-TCCAATTGTGT-TTCA-TTTTAATT
gi|131075                     :                                                                                                                                                                                                                                                                                                    TGCTT-AGC-ATGT--TGAAAC--ATTACT-----ACAA-TAAA-AGT-A-T-CAGTTGTGT-TTCATTTTTAATT