lowQualScore : 11 11 22222 1
lowQualScore : 8 4 22 0 4 11 8 4 55555 2 2 2 33 2 2 2 4 88 33 4 4 333 2 55 4 77 33 4 4444 2 33 2 7 2 2 2 33 99 33 2 3 3 3
lowQualScore : . . .. . . .. . . ..... . . . .. . . . . .. .. . . ... . .. . .. .. . .... . .. . . . . . .. .. .. . . . .
lowQualScore : 4 0 22 8 0 00 0 0 88888 7 4 4 22 4 4 4 7 33 11 4 4 999 2 33 4 55 11 4 7777 2 22 2 2 4 4 4 77 44 99 9 1 1 3
consensus : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CATA-TAC-TGGGAAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCA-TA-TTCA-C-G-CT--TGAACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( gi|13521 ) : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CATA-TACGTGGGAAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TATTTCA-C-G-CT--TGAACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520 : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CATA-TACGTGGGAAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TATTTCA-C-G-CT--TGAACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522 : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CATA-CAC-TGG-AGC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TA-TTCA-T-G-CT--TGAACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13524 : AAACTTGCCAC-CACAGGTAATT-GCA--T--CATA-TAC-TGG-AAC-AAA-GAT-CTCTGC-A-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAATTCA-C-G-CT--TGAACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13523 : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CATA-TAC-T-GGAAC-AAA-GAT-CT--GCAA-CT-TGGAAA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCG-TAATTCA-CAG-CT--TGAACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13525 : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCATA-CAACTGG-ATC-AAA-GAT--T--GA-A-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACA-TATTCCA-C-G-CT--TGAACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526 : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCATA-TAC-TGG-AAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCA-TA--TCA-C-G-C
gi|13527 : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CATA-CAC-TGAG--C-AA--GACACT---C-A-CT-TGG-AA--TC---A-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T-A-GGCA-TA-TTCA-C-G-CT--T-AACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528 : AACTTGC-ACACAC-GGTAATT-GCAGCTT-CATATTACTT--GAACAAAA-GAT-CT--GC-A-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCA-TATTCCA-C-G-CTGATG-ACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529 : TAGC-AC-TACAGGTAATT-GCAATTT-CA-A-TAACTGGAACC-AAA-GA--AT--GC-A-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGCA----TTCA-C-G-CT--TGCAAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530 : -AC-AACAGGTA-CT-GCA--GT-TATA-CACATGG-AGC-AAAAGAT-CT--GC-A-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----A---ATGGCA-TATT-CA-C-G-CT--TGAACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13532 : AAC-AAA-GAT-CT--AC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TA-TTCA-C-G-CT--TGATTAGG-GATTT--TC-TTT
gi|13535 : actggcaAAC-AAA-GAC-CT--AC-AACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC--TA-TTCA-C-G-CT--TGAACAA
gi|13533 : actggcacAC-AAA-GAT-CT--AC-A-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGC---ATTTCA-C-G-CT--TGAACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13536 : actggcacAC-AGA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCA-TA-TTCA-C-G-
gi|13531 : actggcacAC-AAA-GAT-CT--AC-A-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCA-T
gi|13537 : acaggataaaacccatgcgcagcA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCA-TA-TTCA-C-G-CC--TGAACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13534 : A-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCA-TATTTCAGC-G-CT--TGAACCAA-GAGTG--TT-TTTAG-G-
gi|13538 : actgacacatc--TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCA-TCATTCA-C-GTCT--TTAACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA
Alignments
lowQualScore : 11 11 11111 11
lowQualScore : 3 00 3 00 7 3 33 2 5 99999 4 33 2 4 2 2 00 22 4 4 333 2 55 4 77 22 4 4444 4 55 7777 4 2 2 2 33 88 33 2 2 2 3
lowQualScore : . .. . .. . . .. . . ..... . .. . . . . .. .. . . ... . .. . .. .. . .... . .. .... . . . . .. .. .. . . . .
lowQualScore : 6 22 6 00 3 6 66 7 3 22222 4 11 2 4 2 2 00 99 2 2 777 1 00 2 11 99 2 5555 2 44 5555 4 2 2 2 44 11 77 7 9 9 1
consensus : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( family-868 ) : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520 : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13521 : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522 : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CA-TAC-A-C-TGG--A--GCAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-T-G-CTTGA--ACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13523 : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCAACT-TGG-AAA-TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCGTA-A-TT-CA-CAG-CTTGA--ACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13524 : AAACTTGCCAC-CACAGGTAATT-GCA---T-CA-TAT-A-C-T-G-GA--ACAAA-GATCT-CTGCA-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAA-TT-CA-C-G-CTTGA--ACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13525 : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCA-TAC-AAC-TGG--A--TCAAA-GA--T--TGAA-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACAT--A-TTCCA-C-G-CTTGA--ACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526 : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCA-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCAT--A--T-CA-C-G-C
gi|13527 : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CA-TAC-A-C-TGA-G----C-AA-GA--CACT-CA-CT-TGG-AA--T---CA-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T--AGGCAT--A-TT-CA-C-G-CTT-A--ACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528 : AACTTGC-ACACAC-GGTAATT-GCAGCTT-CA-TATTA-C-TTG--A--ACAAAAGA--T-CTGCA-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCAT--A-TTCCA-C-G-C-TGATGACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529 : GC-AC-TACAGGTAATT-GCAATTT-CAATA--A-C-TGG-AA--CCAAA-GA----ATGCA-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGC----A-TT-CA-C-G-CTTGC--AAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530 : ta-AC-AACAGGTA-CT-GCA--GT-TA-TAC-A-C-ATG-GA--GCAAAAGA--T-CTGCA-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----AAT-GG--CAT--A-TT-CA-C-G-CTTGA--ACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13531 : --ACAAA-GA--T-CTACA-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCAT--
gi|13532 : acaggataaaacccatgcgcagc-A-C-TGGCAA--ACAAA-GA--T-CTACA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-C-G-CTTGA--TTAGG-GATTT--TC-TTT
gi|13533 : -A-C-TGG-CAC-ACAAA-GA--T-CTACA-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGCAT----TT-CA-C-G-CTTGA--ACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13534 : A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCAT--ATTT-CAGC-G-CTTGA--ACCAA-GAGTG--TT-TTTAG-G-
gi|13535 : actgacacatc-A-C-TGG-CACAACAAA-GA--C-CTACAACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC-T--A-TT-CA-C-G-CTTGA--ACAA
gi|13536 : -A-C-TGG-CAC-ACAGA-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-
gi|13537 : A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-CCTGA--ACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13538 : --TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCATC-A-TT-CA-C-GTCTTTA--ACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA
Alignments
lowQualScore : 11 11 11111 11
lowQualScore : 3 00 3 00 7 3 33 2 5 99999 4 33 2 4 2 2 00 22 4 4 333 2 55 4 77 22 4 4444 4 55 7777 4 2 2 2 33 88 33 2 2 2 3
lowQualScore : . .. . .. . . .. . . ..... . .. . . . . .. .. . . ... . .. . .. .. . .... . .. .... . . . . .. .. .. . . . .
lowQualScore : 6 22 6 00 3 6 66 7 3 22222 4 11 2 4 2 2 00 99 2 2 777 1 00 2 11 99 2 5555 2 44 5555 4 2 2 2 44 11 77 7 9 9 1
consensus : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( family-868 ) : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520 : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13521 : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522 : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CA-TAC-A-C-TGG--A--GCAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-T-G-CTTGA--ACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13523 : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCAACT-TGG-AAA-TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCGTA-A-TT-CA-CAG-CTTGA--ACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13524 : AAACTTGCCAC-CACAGGTAATT-GCA---T-CA-TAT-A-C-T-G-GA--ACAAA-GATCT-CTGCA-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAA-TT-CA-C-G-CTTGA--ACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13525 : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCA-TAC-AAC-TGG--A--TCAAA-GA--T--TGAA-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACAT--A-TTCCA-C-G-CTTGA--ACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526 : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCA-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCAT--A--T-CA-C-G-C
gi|13527 : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CA-TAC-A-C-TGA-G----C-AA-GA--CACT-CA-CT-TGG-AA--T---CA-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T--AGGCAT--A-TT-CA-C-G-CTT-A--ACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528 : AACTTGC-ACACAC-GGTAATT-GCAGCTT-CA-TATTA-C-TTG--A--ACAAAAGA--T-CTGCA-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCAT--A-TTCCA-C-G-C-TGATGACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529 : GC-AC-TACAGGTAATT-GCAATTT-CAATA--A-C-TGG-AA--CCAAA-GA----ATGCA-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGC----A-TT-CA-C-G-CTTGC--AAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530 : ta-AC-AACAGGTA-CT-GCA--GT-TA-TAC-A-C-ATG-GA--GCAAAAGA--T-CTGCA-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----AAT-GG--CAT--A-TT-CA-C-G-CTTGA--ACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13531 : --ACAAA-GA--T-CTACA-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCAT--
gi|13532 : acaggataaaacccatgcgcagc-A-C-TGGCAA--ACAAA-GA--T-CTACA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-C-G-CTTGA--TTAGG-GATTT--TC-TTT
gi|13533 : -A-C-TGG-CAC-ACAAA-GA--T-CTACA-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGCAT----TT-CA-C-G-CTTGA--ACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13534 : A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCAT--ATTT-CAGC-G-CTTGA--ACCAA-GAGTG--TT-TTTAG-G-
gi|13535 : actgacacatc-A-C-TGG-CACAACAAA-GA--C-CTACAACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC-T--A-TT-CA-C-G-CTTGA--ACAA
gi|13536 : -A-C-TGG-CAC-ACAGA-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-
gi|13537 : A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-CCTGA--ACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13538 : --TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCATC-A-TT-CA-C-GTCTTTA--ACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA
blockSeqs : C AC T GC T A TT A G CACA A TC A A A C AA GT A C TGG C CA T CT GT T TACT T AA TAA C G A T TG GA GT A A T G
blockSeqs : . C . AT T . T . . CAA A . . A . . AT . T G . . T T T . T . A A AT C . . . . G . . . . .
blockSeqs : . C . . . . C . . CAC . . . . . . A . . . . . . . C . . . . A AA . . . . . G . . . . .
blockSeqs : . C . . . . T . . CAC . . . . . . A . . . . . . . . . . . . A AT . . . . . G . . . . .
blockSeqs : . T . . . . T . . GA . . . . . . . . . . . . . . . . . . . A CA . . . . . G . . . . .
blockSeqs : . A . . . . C . . GA . . . . . . . . . . . . . . . . . . . G A . . . . . A . . . . .
blockSeqs : . T . . . . T . . AA . . . . . . . . . . . . . . . . . . . A A . . . . . G . . . . .
blockSeqs : . A . . . . C . . GA . . . . . . . . . . . . . . . . . . . T A . . . . . G . . . . .
blockSeqs : . . . . . . C . . A . . . . . . . . . . . . . . . . . . . G A . . . . . A . . . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . A A . . . . . G . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . . . . . G A . . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . . . . . G A . . . . . . . . . . .
blockSeqs : . . G . . . . . . . . . . . . . . . . . . . G A . . . . . . . . . .
blockSeqs : . . A . . . . . . . . . . . . . . . . . . . G A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G A . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G A . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : A**** A***
originalCons : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
finalCons : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGGA----ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCATA---TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Alignments
lowQualScore : 11 11 111
lowQualScore : 3 00 3 00 7 3 33 2 7 777 4 2 2 4 2 33 2 2 2 4 77 22 4 4 333 2 55 4 77 22 4 4444 4 33 7777 4 2 2 2 33 88 33 2 2 2 3
lowQualScore : . .. . .. . . .. . . ... . . . . . .. . . . . .. .. . . ... . .. . .. .. . .... . .. .... . . . . .. .. .. . . . .
lowQualScore : 6 22 6 00 3 6 44 5 5 888 7 4 4 4 2 11 2 2 2 4 99 99 2 2 777 1 00 2 11 99 2 5555 2 66 5555 4 2 2 2 44 11 77 7 9 9 1
consensus : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( family-868 ) : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520 : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGGG--A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13521 : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGGG--A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522 : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CA-TAC-A-C-TGG---A-GC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-T-G-CTTGA--ACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13523 : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GCAA-CT-TGGAAA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCGTA-A-TT-CA-CAG-CTTGA--ACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13524 : AAACTTGCCAC-CACAGGTAATT-GCA--T--CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CTCTGC-A-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAA-TT-CA-C-G-CTTGA--ACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13525 : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCA-TAC-AAC-TGG---A-TC-A-AA-GAT--T--GA-A-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACAT--A-TTCCA-C-G-CTTGA--ACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526 : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCAT--A--T-CA-C-G-C
gi|13527 : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CA-TAC-A-C-TG----A-GC-A-A--GACACT---C-A-CT-TGG-AA--TC---A-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T-AGG-CAT--A-TT-CA-C-G-CTT-A--ACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528 : AACTTGC-ACACAC-GGTAATT-GCAGCTT-CA-TATTA-C-TTG---A-AC-A-AAAGAT-CT--GC-A-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCAT--A-TTCCA-C-G-C-TGATGACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529 : GC-AC-TACAGGTAATT-GCAATTT-CAATA--A-C-TGG---A-ACCA-AA-GA--AT--GC-A-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGC----A-TT-CA-C-G-CTTGC--AAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530 : ta-AC-AACAGGTA-CT-GCA--GT-TA-TAC-A-CATGG---A-GC-A-AAAGAT-CT--GC-A-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----AAT-GG--CAT--A-TT-CA-C-G-CTTGA--ACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13531 : -AC-A-AA-GAT-CT--AC-A-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCAT--
gi|13532 : acaggataaaacccatgcgcagc-A-C-TGGCA-A-AC-A-AA-GAT-CT--AC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-C-G-CTTGA--TTAGG-GATTT--TC-TTT
gi|13533 : -A-C-TGGC--ACAC-A-AA-GAT-CT--AC-A-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGCAT----TT-CA-C-G-CTTGA--ACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13534 : -A-C-TGA---C-AC-ATCA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCAT--ATTT-CAGC-G-CTTGA--ACCAA-GAGTG--TT-TTTAG-G-
gi|13535 : -A-C-TGGCACA-AC-A-AA-GAC-CT--AC-AACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC-T--A-TT-CA-C-G-CTTGA--ACAA
gi|13536 : -A-C-TGGC--ACAC-A-GA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-
gi|13537 : A-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-CCTGA--ACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13538 : --TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCATC-A-TT-CA-C-GTCTTTA--ACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA