lowQualScore                  :            11              11           22222                                                                                         1                                                   
lowQualScore                  :      8  4  22       0  4   11  8    4   55555   2   2   2  33  2 2  2   4  88  33  4 4 333  2 55 4    77   33    4   4444 2 33     2  7    2 2 2  33       99     33  2     3 3   3       
lowQualScore                  :      .  .  ..       .  .   ..  .    .   .....   .   .   .  ..  . .  .   .  ..  ..  . . ...  . .. .    ..   ..    .   .... . ..     .  .    . . .  ..       ..     ..  .     . .   .       
lowQualScore                  :      4  0  22       8  0   00  0    0   88888   7   4   4  22  4 4  4   7  33  11  4 4 999  2 33 4    55   11    4   7777 2 22     2  2    4 4 4  77       44     99  9     1 1   3       
consensus                     : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CATA-TAC-TGGGAAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCA-TA-TTCA-C-G-CT--TGAACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( gi|13521 )        : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CATA-TACGTGGGAAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TATTTCA-C-G-CT--TGAACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520                      : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CATA-TACGTGGGAAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TATTTCA-C-G-CT--TGAACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522                      : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CATA-CAC-TGG-AGC-AAA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TA-TTCA-T-G-CT--TGAACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13524                      : AAACTTGCCAC-CACAGGTAATT-GCA--T--CATA-TAC-TGG-AAC-AAA-GAT-CTCTGC-A-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAATTCA-C-G-CT--TGAACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13523                      : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CATA-TAC-T-GGAAC-AAA-GAT-CT--GCAA-CT-TGGAAA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCG-TAATTCA-CAG-CT--TGAACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13525                      : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCATA-CAACTGG-ATC-AAA-GAT--T--GA-A-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACA-TATTCCA-C-G-CT--TGAACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526                      : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCATA-TAC-TGG-AAC-AAA-GAT-CT--GC-A-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCA-TA--TCA-C-G-C
gi|13527                      : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CATA-CAC-TGAG--C-AA--GACACT---C-A-CT-TGG-AA--TC---A-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T-A-GGCA-TA-TTCA-C-G-CT--T-AACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528                      :  AACTTGC-ACACAC-GGTAATT-GCAGCTT-CATATTACTT--GAACAAAA-GAT-CT--GC-A-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCA-TATTCCA-C-G-CTGATG-ACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529                      :     TAGC-AC-TACAGGTAATT-GCAATTT-CA-A-TAACTGGAACC-AAA-GA--AT--GC-A-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGCA----TTCA-C-G-CT--TGCAAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530                      :         -AC-AACAGGTA-CT-GCA--GT-TATA-CACATGG-AGC-AAAAGAT-CT--GC-A-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----A---ATGGCA-TATT-CA-C-G-CT--TGAACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13532                      :                                              AAC-AAA-GAT-CT--AC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCA-TA-TTCA-C-G-CT--TGATTAGG-GATTT--TC-TTT
gi|13535                      :                                       actggcaAAC-AAA-GAC-CT--AC-AACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC--TA-TTCA-C-G-CT--TGAACAA
gi|13533                      :                                       actggcacAC-AAA-GAT-CT--AC-A-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGC---ATTTCA-C-G-CT--TGAACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13536                      :                                       actggcacAC-AGA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCA-TA-TTCA-C-G-
gi|13531                      :                                       actggcacAC-AAA-GAT-CT--AC-A-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCA-T
gi|13537                      :                             acaggataaaacccatgcgcagcA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCA-TA-TTCA-C-G-CC--TGAACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13534                      :                                                    A-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCA-TATTTCAGC-G-CT--TGAACCAA-GAGTG--TT-TTTAG-G-
gi|13538                      :                                                                 actgacacatc--TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCA-TCATTCA-C-GTCT--TTAACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA





Alignments
lowQualScore                  :            11              11                 11111                           11                                                                                                               
lowQualScore                  :         3  00          3   00  7  3  33 2 5   99999     4  33 2     4  2   2  00  22  4 4 333  2 55 4    77   22    4   4444 4 55      7777  4  2 2 2     33    88     33  2     2 2   3       
lowQualScore                  :         .  ..          .   ..  .  .  .. . .   .....     .  .. .     .  .   .  ..  ..  . . ...  . .. .    ..   ..    .   .... . ..      ....  .  . . .     ..    ..     ..  .     . .   .       
lowQualScore                  :         6  22          6   00  3  6  66 7 3   22222     4  11 2     4  2   2  00  99  2 2 777  1 00 2    11   99    2   5555 2 44      5555  4  2 2 2     44    11     77  7     9 9   1       
consensus                     : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( family-868 )      : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520                      : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13521                      : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522                      : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CA-TAC-A-C-TGG--A--GCAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-T-G-CTTGA--ACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13523                      : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCAACT-TGG-AAA-TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCGTA-A-TT-CA-CAG-CTTGA--ACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13524                      : AAACTTGCCAC-CACAGGTAATT-GCA---T-CA-TAT-A-C-T-G-GA--ACAAA-GATCT-CTGCA-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAA-TT-CA-C-G-CTTGA--ACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13525                      : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCA-TAC-AAC-TGG--A--TCAAA-GA--T--TGAA-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACAT--A-TTCCA-C-G-CTTGA--ACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526                      : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCA-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCAT--A--T-CA-C-G-C
gi|13527                      : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CA-TAC-A-C-TGA-G----C-AA-GA--CACT-CA-CT-TGG-AA--T---CA-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T--AGGCAT--A-TT-CA-C-G-CTT-A--ACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528                      :  AACTTGC-ACACAC-GGTAATT-GCAGCTT-CA-TATTA-C-TTG--A--ACAAAAGA--T-CTGCA-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCAT--A-TTCCA-C-G-C-TGATGACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529                      :       GC-AC-TACAGGTAATT-GCAATTT-CAATA--A-C-TGG-AA--CCAAA-GA----ATGCA-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGC----A-TT-CA-C-G-CTTGC--AAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530                      :       ta-AC-AACAGGTA-CT-GCA--GT-TA-TAC-A-C-ATG-GA--GCAAAAGA--T-CTGCA-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----AAT-GG--CAT--A-TT-CA-C-G-CTTGA--ACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13531                      :                                                  --ACAAA-GA--T-CTACA-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCAT--
gi|13532                      :                acaggataaaacccatgcgcagc-A-C-TGGCAA--ACAAA-GA--T-CTACA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-C-G-CTTGA--TTAGG-GATTT--TC-TTT
gi|13533                      :                                       -A-C-TGG-CAC-ACAAA-GA--T-CTACA-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGCAT----TT-CA-C-G-CTTGA--ACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13534                      :                                                        A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCAT--ATTT-CAGC-G-CTTGA--ACCAA-GAGTG--TT-TTTAG-G-
gi|13535                      :                            actgacacatc-A-C-TGG-CACAACAAA-GA--C-CTACAACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC-T--A-TT-CA-C-G-CTTGA--ACAA
gi|13536                      :                                       -A-C-TGG-CAC-ACAGA-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-
gi|13537                      :                                                        A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-CCTGA--ACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13538                      :                                                                               --TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCATC-A-TT-CA-C-GTCTTTA--ACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA





Alignments
lowQualScore                  :            11              11                 11111                           11                                                                                                               
lowQualScore                  :         3  00          3   00  7  3  33 2 5   99999     4  33 2     4  2   2  00  22  4 4 333  2 55 4    77   22    4   4444 4 55      7777  4  2 2 2     33    88     33  2     2 2   3       
lowQualScore                  :         .  ..          .   ..  .  .  .. . .   .....     .  .. .     .  .   .  ..  ..  . . ...  . .. .    ..   ..    .   .... . ..      ....  .  . . .     ..    ..     ..  .     . .   .       
lowQualScore                  :         6  22          6   00  3  6  66 7 3   22222     4  11 2     4  2   2  00  99  2 2 777  1 00 2    11   99    2   5555 2 44      5555  4  2 2 2     44    11     77  7     9 9   1       
consensus                     : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( family-868 )      : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520                      : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13521                      : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522                      : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CA-TAC-A-C-TGG--A--GCAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-T-G-CTTGA--ACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13523                      : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCAACT-TGG-AAA-TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCGTA-A-TT-CA-CAG-CTTGA--ACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13524                      : AAACTTGCCAC-CACAGGTAATT-GCA---T-CA-TAT-A-C-T-G-GA--ACAAA-GATCT-CTGCA-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAA-TT-CA-C-G-CTTGA--ACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13525                      : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCA-TAC-AAC-TGG--A--TCAAA-GA--T--TGAA-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACAT--A-TTCCA-C-G-CTTGA--ACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526                      : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCA-TAT-A-C-TGG--A--ACAAA-GA--T-CTGCA-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCAT--A--T-CA-C-G-C
gi|13527                      : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CA-TAC-A-C-TGA-G----C-AA-GA--CACT-CA-CT-TGG-AA--T---CA-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T--AGGCAT--A-TT-CA-C-G-CTT-A--ACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528                      :  AACTTGC-ACACAC-GGTAATT-GCAGCTT-CA-TATTA-C-TTG--A--ACAAAAGA--T-CTGCA-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCAT--A-TTCCA-C-G-C-TGATGACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529                      :       GC-AC-TACAGGTAATT-GCAATTT-CAATA--A-C-TGG-AA--CCAAA-GA----ATGCA-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGC----A-TT-CA-C-G-CTTGC--AAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530                      :       ta-AC-AACAGGTA-CT-GCA--GT-TA-TAC-A-C-ATG-GA--GCAAAAGA--T-CTGCA-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----AAT-GG--CAT--A-TT-CA-C-G-CTTGA--ACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13531                      :                                                  --ACAAA-GA--T-CTACA-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCAT--
gi|13532                      :                acaggataaaacccatgcgcagc-A-C-TGGCAA--ACAAA-GA--T-CTACA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-C-G-CTTGA--TTAGG-GATTT--TC-TTT
gi|13533                      :                                       -A-C-TGG-CAC-ACAAA-GA--T-CTACA-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGCAT----TT-CA-C-G-CTTGA--ACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13534                      :                                                        A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCAT--ATTT-CAGC-G-CTTGA--ACCAA-GAGTG--TT-TTTAG-G-
gi|13535                      :                            actgacacatc-A-C-TGG-CACAACAAA-GA--C-CTACAACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC-T--A-TT-CA-C-G-CTTGA--ACAA
gi|13536                      :                                       -A-C-TGG-CAC-ACAGA-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-
gi|13537                      :                                                        A-GA--T-CTACA-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-CCTGA--ACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13538                      :                                                                               --TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCATC-A-TT-CA-C-GTCTTTA--ACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA


blockSeqs                     :         C  AC          T   GC  T  A  TT A G   CACA      A  TC A     A  A   C  AA  GT  A C TGG  C CA T    CT   GT    T   TACT T AA      TAA   C  G A T     TG    GA     GT  A     A T   G
blockSeqs                     :         .  C           .   AT  T  .  T  . .   CAA       A  .  .     A  .   .  AT  .   T G .    . T  T    T    .     T   .    A A       AT    C  . . .     .     G      .   .     . .   .
blockSeqs                     :         .  C           .   .   .  .  C  . .   CAC       .  .  .     .  .   .  A   .   . . .    . .  .    C    .     .   .    . A       AA    .  . . .     .     G      .   .     . .   .
blockSeqs                     :         .  C           .   .   .  .  T  . .   CAC       .  .  .     .  .   .  A   .   . . .    . .  .    .    .     .   .    . A       AT    .  . . .     .     G      .   .     . .   .
blockSeqs                     :         .  T           .   .   .  .  T  . .   GA        .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . A       CA    .  . . .     .     G      .   .     . .   .
blockSeqs                     :         .  A           .   .   .  .  C  . .   GA        .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .     .     A      .   .     . .   .
blockSeqs                     :         .  T           .   .   .  .  T  . .   AA        .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . A       A     .  . . .     .     G      .   .     . .   .
blockSeqs                     :         .  A           .   .   .  .  C  . .   GA        .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . T       A     .  . . .     .     G      .   .     . .   .
blockSeqs                     :         .  .           .   .   .  .  C  . .   A         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .     .     A      .   .     . .   .
blockSeqs                     :         .  .           .   .   .  .  .  . .   A         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . A       A     .  . . .     .     G      .   .     . .   .
blockSeqs                     :                                         . .   A         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .     .     .      .   .     . .   .
blockSeqs                     :                                         . .   A         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .     .     .      .   .     . .   .
blockSeqs                     :                                         . .   G         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .     .     .      .   .     . .    
blockSeqs                     :                                         . .   A         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .     .     .      .   .            
blockSeqs                     :                                                         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .     .                             
blockSeqs                     :                                                         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . G       A     .  . . .                                   
blockSeqs                     :                                                         .  .  .     .  .   .  .   .   . . .    . .  .    .    .     .   .    . .       .     .  . . .                                   
blockSeqs                     :                                                                               .   .   . . .    . .  .    .    .     .   .    . .                                                        


blockSeqCons                  :                                               A****                                                                                    A***
originalCons                  : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG-GA--ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
finalCons                     : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGGA----ACAAA-GA--T-CTGCA-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCATA---TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA





Alignments
lowQualScore                  :            11              11                 111                                                                                                                                                 
lowQualScore                  :         3  00          3   00  7  3  33 2 7   777 4  2 2  4   2  33  2 2  2   4  77  22  4 4 333  2 55 4    77   22    4   4444 4 33      7777  4  2 2 2     33    88     33  2     2 2   3       
lowQualScore                  :         .  ..          .   ..  .  .  .. . .   ... .  . .  .   .  ..  . .  .   .  ..  ..  . . ...  . .. .    ..   ..    .   .... . ..      ....  .  . . .     ..    ..     ..  .     . .   .       
lowQualScore                  :         6  22          6   00  3  6  44 5 5   888 7  4 4  4   2  11  2 2  2   4  99  99  2 2 777  1 00 2    11   99    2   5555 2 66      5555  4  2 2 2     44    11     77  7     9 9   1       
consensus                     : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
Reference ( family-868 )      : AAACTTGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-GGGGCAT--A-TT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13520                      : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGGG--A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13521                      : AAACTGGC-AC-CACAGGTAATT-GCA--TT-CA-TAT-A-CGTGGG--A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--ATTT-CA-C-G-CTTGA--ACAAG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13522                      : AAACTTGC-AC--ACAGGTAATT-GAA--TT-CA-TAC-A-C-TGG---A-GC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-T-G-CTTGA--ACATG-GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13523                      : AAACTTGC-AC-CACAGGTAATTTGCA--TT-CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GCAA-CT-TGGAAA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----ATT-AGGGCGTA-A-TT-CA-CAG-CTTGA--ACAAG-AGGT---TT-TTTAG-G-TTC-TTG
gi|13524                      : AAACTTGCCAC-CACAGGTAATT-GCA--T--CA-TAT-A-C-TGG---A-AC-A-AA-GAT-CTCTGC-A-CT-TGG-AA--TC--CG-T-G---CA----T-GAAA--TTT--TAAATTTC----A-T-AGGGCATTAA-TT-CA-C-G-CTTGA--ACAA--GAGTG--TT-TTTA--G-TTC-TTGCGGA
gi|13525                      : AAACTGGC-AA-T-CAGGCAATT-GCA--TTTCA-TAC-AAC-TGG---A-TC-A-AA-GAT--T--GA-A-CT-TGA-AAA-TC--CG-T-G---CA-C--TTGGAA--TTT--TAAA-TTC----A-T-GGGACAT--A-TTCCA-C-G-CTTGA--ACAA--GAGTG--TT-TTTAG-G-TTC-TTGCGGA
gi|13526                      : AAACTTGC-AC-AACAGGTTAAT-GCA--TTTCA-TAT-A-C-TGG---A-AC-A-AA-GAT-CT--GC-A-CT-TGG-AA--TCGTCG-T-----CA-CT-T-GAAA--TTT--TAAATTTC----A-T-AGGGCAT--A--T-CA-C-G-C
gi|13527                      : AACCTTGC-AC--ACAA-TA-TT-GCA--TT-CA-TAC-A-C-TG----A-GC-A-A--GACACT---C-A-CT-TGG-AA--TC---A-T-G---CA-C--T-GA-----TT--TAAA-TTC----A-T-AGG-CAT--A-TT-CA-C-G-CTT-A--ACAAG---ATG--TT-TTTA--G-TTC-TTGCGGA
gi|13528                      :  AACTTGC-ACACAC-GGTAATT-GCAGCTT-CA-TATTA-C-TTG---A-AC-A-AAAGAT-CT--GC-A-CT-TGG-AA--T---CG-T-G---CA-C--T-G-AA--TTT--TAAT-TTC----A-T-TAGGCAT--A-TTCCA-C-G-C-TGATGACAAGAGAGTG--TT-TTTAGAG-TTC-TTG-GGA
gi|13529                      :       GC-AC-TACAGGTAATT-GCAATTT-CAATA--A-C-TGG---A-ACCA-AA-GA--AT--GC-A-CT-TGG-AAAATC--CGAT-G---CA-C--TTGAAA--TTT--TAAA-TTC----A-TAAGGGC----A-TT-CA-C-G-CTTGC--AAAAA-GAGTG--TTATTTAG-G-TTC-TTGCG
gi|13530                      :       ta-AC-AACAGGTA-CT-GCA--GT-TA-TAC-A-CATGG---A-GC-A-AAAGAT-CT--GC-A-CTATGGCAA--TC--CG-TCG---CA-CCAT-GAAG--TTT--AAAA-TTC----AAT-GG--CAT--A-TT-CA-C-G-CTTGA--ACAAG-GAAT---TG-TTTCG-G-TTCGTTGTGGA
gi|13531                      :                                                   -AC-A-AA-GAT-CT--AC-A-C--TGG-AA--TT--CGTT-G---CA----T-GAAACTTTT--CAAC-TTC----A-T--GGGCAT--
gi|13532                      :                acaggataaaacccatgcgcagc-A-C-TGGCA-A-AC-A-AA-GAT-CT--AC-A-CT-TGG-AA--TC--CG-T-G---CA-C--T-GAAA--TTT--TAAA-TTC----A-T-AGGGCAT--A-TT-CA-C-G-CTTGA--TTAGG-GATTT--TC-TTT
gi|13533                      :                                       -A-C-TGGC--ACAC-A-AA-GAT-CT--AC-A-CT-TGG-AAATTC--CG-TGG---CACC--T-GAAAT-TTT--TAAA-CTC----A-T-GGGGCAT----TT-CA-C-G-CTTGA--ACAA--GAGTG---T-TTTAG-GTTTT-TTGCGGA
gi|13534                      :                                       -A-C-TGA---C-AC-ATCA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAAC-TTT--TAAA-CTT----A-T-GGGGCAT--ATTT-CAGC-G-CTTGA--ACCAA-GAGTG--TT-TTTAG-G-
gi|13535                      :                                       -A-C-TGGCACA-AC-A-AA-GAC-CT--AC-AACT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--CTT--TAAA-CTT----A-T-GGGGC-T--A-TT-CA-C-G-CTTGA--ACAA
gi|13536                      :                                       -A-C-TGGC--ACAC-A-GA-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-
gi|13537                      :                                                          A-GAT-CT--AC-A-CT-TGG-AA--TT--CG-T-G---CA-C--T-GAAA--TTT--TAAA-CTC----A-T-GGGGCAT--A-TT-CA-C-G-CCTGA--ACAA--GAGTG--TT-TTTAG-G-TTT-TTGCAGA
gi|13538                      :                                                                                  --TC--CG-T-GTGGCA-T--T-GAAA--CTTGTTAAA-ACCTACTA-T-GGGGCATC-A-TT-CA-C-GTCTTTA--ACAAG-AGGTGGTTT-TTCAG-G-TTT-TTGCGGA