lowQualScore : 2 2 2 2 33 6666 2 4 2
lowQualScore : . . . . .. .... . . .
lowQualScore : 2 2 2 7 11 9999 2 4 4
consensus : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTTT-TGTATAT
Reference ( gi|32597 ) : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTTT-TGTATAT
gi|32598 : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTTT-TGTATA
gi|32599 : AAGGTGAGAAC-C-TCG-AAAGTTGTTAGAA--C----TTGTG-TTCAAA-CTTTT-TGTATAT
gi|32600 : AAGATGAGAAC-C-TCG-CAAGTTGTTAGAA--C----TTGTG-TTTGAA-CCTTT-TGTATAT
gi|32601 : AAGGTGAGAAC-C-TCG-TAAGTTGTTAGAA--CT---TTGTG-TTCAAACCCTTT-TGTACAT
gi|32602 : AAGGTGAGAACGC-TCG-TAAGTTGTTAGAA--C----TTGTG-TTCGAA-C--TT-TGTATAT
gi|32603 : AAGGTGCGATC-C-TCG-TAAGTTGTTAGAG--C----TTGCG-TTCAAT-CCTTT-TGTATAT
gi|32604 : AAGTTGAGAAT-C-TTA--AAGCTGTAAGGA--C----TTGTG-TTTGAA-CCTTT-TGTAT
gi|32605 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTTT-TGTATAT
gi|32606 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTTTGTGTATAT
gi|32607 : AGGTGAGAAC-T-TCG-TAAGTTGTTAGAA--CTTAATTGTG-TTCGAA-CCTTT-TGTATAT
gi|32608 : AGGTGAGAAC-C-TTG-TAAGTGGTAAGAA--C----TTGTG-TTCAAA-CCATT-TGTATAT
gi|32609 : AGGTGAGAAA-C-TCA-TAAGTTGTAAG-A--C----GTGTGTTTCAAA-ACCTT-TGTATAT
gi|32610 : GGTGAGAAC-C-TCT-TTTGTTGTTAGAA--C----TTGTG-ATTGAA-CCTTT-TGTATAT
gi|32611 : GGTGAGAAC-CCTCGCTAAGTTGTTAAGATGC----TTGTG-TTCAAACCCTTT-TGT
gi|32612 : GGT-AGATC-C-TTG-TAAGTTGACAGAA--T----TTGTG-TTCAAT-CTTGT-TGTATA
gi|32613 : TGAGAAC-C-CCT-TTAGTTGAAAGAA--C----TTGTG-TTCGAA-CATTT-TGTATAT
gi|32614 : AC-T-TAG-CAAGTTGTCAGAA--C----TCGTA-TTCAAA-CCTTT-TGTATGT
gi|32615 : C-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-
Alignments
lowQualScore : 2 2 2 2 22 6666 2 2 4 2 2
lowQualScore : . . . . .. .... . . . . .
lowQualScore : 1 1 1 0 99 6666 1 7 2 2 2
consensus : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
Reference ( family-864 ) : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
gi|32597 : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATAT
gi|32598 : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATA
gi|32599 : AAGGTGAGAAC-C-TCG-AAAGTTGTTAGAA--C----TTGTG-TTCAAA-CTTT-T-TGTATAT
gi|32600 : AAGATGAGAAC-C-TCG-CAAGTTGTTAGAA--C----TTGTG-TTTGAA-CCTT-T-TGTATAT
gi|32601 : AAGGTGAGAAC-C-TCG-TAAGTTGTTAGAA--CT---TTGTG-TTCAAACCCTT-T-TGTACAT
gi|32602 : AAGGTGAGAACGC-TCG-TAAGTTGTTAGAA--C----TTGTG-TTCGAA-C--T-T-TGTATAT
gi|32603 : AAGGTGCGATC-C-TCG-TAAGTTGTTAGAG--C----TTGCG-TTCAAT-CCTT-T-TGTATAT
gi|32604 : AAGTTGAGAAT-C-TTA--AAGCTGTAAGGA--C----TTGTG-TTTGAA-CCTT-T-TGTAT
gi|32605 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATAT
gi|32606 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-TGTGTATAT
gi|32607 : AGGTGAGAAC-T-TCG-TAAGTTGTTAGAA--CTTAATTGTG-TTCGAA-CCTT-T-TGTATAT
gi|32608 : AGGTGAGAAC-C-TTG-TAAGTGGTAAGAA--C----TTGTG-TTCAAA-CCAT-T-TGTATAT
gi|32609 : AGGTGAGAAA-C-TCA-TAAGTTGTAAG-A--C----GTGTGTTTCAAA-ACCT-T-TGTATAT
gi|32610 : GGTGAGAAC-C-TCT-TTTGTTGTTAGAA--C----TTGTG-ATTGAA-CCTT-T-TGTATAT
gi|32611 : GGTGAGAAC-CCTCGCTAAGTTGTTAAGATGC----TTGTG-TTCAAACCCTT-T-TGT
gi|32612 : GGT-AGATC-C-TTG-TAAGTTGACAGAA--T----TTGTG-TTC-AA-TCTTGT-TGTATA
gi|32613 : TGAGAAC-C-CCT-TTAGTTGAAAGAA--C----TTGTG-TTCGAA-CATT-T-TGTATAT
gi|32614 : AC-T-TAG-CAAGTTGTCAGAA--C----TCGTA-TTCAAA-CCTT-T-TGTATGT
gi|32615 : C-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-
Alignments
lowQualScore : 2 2 2 2 22 6666 2 2 4 2 2
lowQualScore : . . . . .. .... . . . . .
lowQualScore : 1 1 1 0 99 6666 1 7 2 2 2
consensus : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
Reference ( family-864 ) : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
gi|32597 : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATAT
gi|32598 : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATA
gi|32599 : AAGGTGAGAAC-C-TCG-AAAGTTGTTAGAA--C----TTGTG-TTCAAA-CTTT-T-TGTATAT
gi|32600 : AAGATGAGAAC-C-TCG-CAAGTTGTTAGAA--C----TTGTG-TTTGAA-CCTT-T-TGTATAT
gi|32601 : AAGGTGAGAAC-C-TCG-TAAGTTGTTAGAA--CT---TTGTG-TTCAAACCCTT-T-TGTACAT
gi|32602 : AAGGTGAGAACGC-TCG-TAAGTTGTTAGAA--C----TTGTG-TTCGAA-C--T-T-TGTATAT
gi|32603 : AAGGTGCGATC-C-TCG-TAAGTTGTTAGAG--C----TTGCG-TTCAAT-CCTT-T-TGTATAT
gi|32604 : AAGTTGAGAAT-C-TTA--AAGCTGTAAGGA--C----TTGTG-TTTGAA-CCTT-T-TGTAT
gi|32605 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATAT
gi|32606 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-TGTGTATAT
gi|32607 : AGGTGAGAAC-T-TCG-TAAGTTGTTAGAA--CTTAATTGTG-TTCGAA-CCTT-T-TGTATAT
gi|32608 : AGGTGAGAAC-C-TTG-TAAGTGGTAAGAA--C----TTGTG-TTCAAA-CCAT-T-TGTATAT
gi|32609 : AGGTGAGAAA-C-TCA-TAAGTTGTAAG-A--C----GTGTGTTTCAAA-ACCT-T-TGTATAT
gi|32610 : GGTGAGAAC-C-TCT-TTTGTTGTTAGAA--C----TTGTG-ATTGAA-CCTT-T-TGTATAT
gi|32611 : GGTGAGAAC-CCTCGCTAAGTTGTTAAGATGC----TTGTG-TTCAAACCCTT-T-TGT
gi|32612 : GGT-AGATC-C-TTG-TAAGTTGACAGAA--T----TTGTG-TTC-AA-TCTTGT-TGTATA
gi|32613 : TGAGAAC-C-CCT-TTAGTTGAAAGAA--C----TTGTG-TTCGAA-CATT-T-TGTATAT
gi|32614 : AC-T-TAG-CAAGTTGTCAGAA--C----TCGTA-TTCAAA-CCTT-T-TGTATGT
gi|32615 : C-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-
blockSeqs : G C C C TG TTAA T A C G G
blockSeqs : . . . T . T . A C . .
blockSeqs : . . . T . . . G . . .
blockSeqs : . . . T . . . A . . .
blockSeqs : . . . T . . . G . . .
blockSeqs : . . . T . . . A . . .
blockSeqs : . . . A . . . G . . .
blockSeqs : . . . C . . . A . . .
blockSeqs : . . . C . . . A . . .
blockSeqs : . . . T . . . G . . .
blockSeqs : . . . A . . . A . . .
blockSeqs : . . . A . . . A . . .
blockSeqs : . . . T . . . G . . .
blockSeqs : . . . T . . . A . . .
blockSeqs : . . . C . . . G . . .
blockSeqs : . . . A . . . A . . .
blockSeqs : . . . C . . . A . . .
blockSeqs : . . . C . . . . .
blockSeqCons :
originalCons : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
finalCons : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
Alignments
lowQualScore : 2 2 2 2 22 6666 2 2 4 2 2
lowQualScore : . . . . .. .... . . . . .
lowQualScore : 1 1 1 0 99 6666 1 7 2 2 2
consensus : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
Reference ( family-864 ) : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCGAA-CCTT-T-TGTATAT
gi|32597 : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATAT
gi|32598 : AAGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATA
gi|32599 : AAGGTGAGAAC-C-TCG-AAAGTTGTTAGAA--C----TTGTG-TTCAAA-CTTT-T-TGTATAT
gi|32600 : AAGATGAGAAC-C-TCG-CAAGTTGTTAGAA--C----TTGTG-TTTGAA-CCTT-T-TGTATAT
gi|32601 : AAGGTGAGAAC-C-TCG-TAAGTTGTTAGAA--CT---TTGTG-TTCAAACCCTT-T-TGTACAT
gi|32602 : AAGGTGAGAACGC-TCG-TAAGTTGTTAGAA--C----TTGTG-TTCGAA-C--T-T-TGTATAT
gi|32603 : AAGGTGCGATC-C-TCG-TAAGTTGTTAGAG--C----TTGCG-TTCAAT-CCTT-T-TGTATAT
gi|32604 : AAGTTGAGAAT-C-TTA--AAGCTGTAAGGA--C----TTGTG-TTTGAA-CCTT-T-TGTAT
gi|32605 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-T-TGTATAT
gi|32606 : AGGTGAGAAC-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-CCTT-TGTGTATAT
gi|32607 : AGGTGAGAAC-T-TCG-TAAGTTGTTAGAA--CTTAATTGTG-TTCGAA-CCTT-T-TGTATAT
gi|32608 : AGGTGAGAAC-C-TTG-TAAGTGGTAAGAA--C----TTGTG-TTCAAA-CCAT-T-TGTATAT
gi|32609 : AGGTGAGAAA-C-TCA-TAAGTTGTAAG-A--C----GTGTGTTTCAAA-ACCT-T-TGTATAT
gi|32610 : GGTGAGAAC-C-TCT-TTTGTTGTTAGAA--C----TTGTG-ATTGAA-CCTT-T-TGTATAT
gi|32611 : GGTGAGAAC-CCTCGCTAAGTTGTTAAGATGC----TTGTG-TTCAAACCCTT-T-TGT
gi|32612 : GGT-AGATC-C-TTG-TAAGTTGACAGAA--T----TTGTG-TTC-AA-TCTTGT-TGTATA
gi|32613 : TGAGAAC-C-CCT-TTAGTTGAAAGAA--C----TTGTG-TTCGAA-CATT-T-TGTATAT
gi|32614 : AC-T-TAG-CAAGTTGTCAGAA--C----TCGTA-TTCAAA-CCTT-T-TGTATGT
gi|32615 : C-C-TCG-TAAGTTGTCAGAA--C----TTGTG-TTCAAA-