lowQualScore                  :                                                                                             111                      11111    2                    
lowQualScore                  :     2     2    33  33    2   2      444    2     2    2   2      2   33 2  2    5   2  55   000 2   666  2  7 2 5    11111    6    6666 3          
lowQualScore                  :     .     .    ..  ..    .   .      ...    .     .    .   .      .   .. .  .    .   .  ..   ... .   ...  .  . . .    .....    .    .... .          
lowQualScore                  :     4     4    22  22    4   4      666    4     5    4   4      4   22 4  4    0   5  99   666 5   999  5  5 5 0    11111    6    5555 1          
consensus                     : ACCA-GTGAA-CTTC--GC--TATT-CGT-ATGCGC--CGAGG-AACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA--CTT--GT-ACC---CT-GT-C-A-TCAGA----CCCC-CTCC----C-TTTGTTTTTT
Reference ( gi|127843 )       : ACCA-GTGAA-CTTC--GC--TATT-CGT-ATGCGC--CGAGG-AACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA--CTT--CT-ACC---CT-GT-C-A-TCAGA----CCCCTCTCC----C-TTTGTTTTTT
gi|127846                     : ACCA-GTGAA-CTTC--GC--TATT-CGT-ATGCGC--CGA-G-AACAT-GTAA-TGT-GTGACT-GAT--GCAC-TTTG-AAA-CA--CTT--CT-ACC---CT-GT-C-A-TCAGA----CCCC-CT-C----C-TTTGTTTTTT
gi|127847                     : ACCA-GTGAA-CT-C--GC--TATT-CGT-ATGCGC--CGAGG-AACAT-GTAA--GT-GTGACT-GGT--G-AC-TTTG-AAA-CA--CTT--CT-ACCCTGCT-GT-C-A-TCAGA----CCCC-CTCC----C-TTTGTTTTTTtt
gi|127848                     : ACCA-GTGAT-ATTC--GC--AATT-TGT-ATGCGC--GGAGG-AACAT-GTAA-TAT-G--ACT-GAT--G-AC-TTTG-AAA-CA--CTT--CT-ACC---CT-GT-C-A-TCAGA----CCCC-CTCC----C-TTTGTTTTTT
gi|127844                     : ACCA-GTGAA-CTTC--GC--TATT-CGT-ATGCGC--TGAGG-AACAT-GTAA-TAT-ATGA-T-GAT--G-AC-TTTG-AAA-CA--CTT--GT-ACC---CT-GTGG-A-TCAGG----CCCC-CTCT----C-TTTGTTTTTTt
gi|127849                     : ACCT-GTGAA-CTTC--GC--TATT-CGT-GTGCGC--CGAGG-AACAT-GTAA-TGT-GTGACT-GAT--A-AC-TTTG-AAATCGATCGT--CT-AAC---CT-GT-C-A-TCAGA----TCCCCCTCC----C-TTTGTTTGTTt
gi|127845                     : ACCA-GTGA--CTTC--GC--TATT-CGT-ATGCGC--TGAGG-AACAT-GTAA-TAT-ATGACT-GATAGA-AC-TTTG-AAA-CA--CTTGGAT-ACC---CT-GTGG-A-TCAGC----CCCCTCT------C-TTTGTTTGTTt
gi|127852                     : ACCAAGTGAA-CTTC--GC--TCTT-CGT-ATGCG---CGAGG-ACCATGGCAA-TGTGGTGACTGGAT--G-AC-TTTGAAAA-CA--CTT--CT-ACC---CTGGT-C-A-CGAGC----CCCC---CC----C-TTTGTTTTtt
gi|127850                     : ACCA-GTGAA-CTGC--GC--TATT-TGT-AT-CAC--TGAGG-AACAT-GTAA-TAT-ATGCGT-GAT--T-AC-TTTG-AAA-CA--CTT--GT-A-C---CT-GT-TGA-TCAGG----CCCC-CTCC----C-TTTGGTTTgtttt
gi|127853                     : ACCA-GTGAA-CTTCCCGC--TATTTCGT-ATGCGCAACGGGA-TACAT--TAT-CGT-GTGACT-GAT--G--C-TTTG-AAA-CAC-CTT--GT-A-C---CT-GT-C-ATTCAGA----CCCC-CTCC----C-TTTGTTTGTTgtttt
gi|127851                     : ACCA-GTGAA-TTTC--GT--TATT-CAT-ATGAGC--TGAGG-TACAC-ATA---------ACC-AAT--G-AC-TTTG-AAA-CA--TTT--GT-ACC---CT-GT-C-ACTCACACACTCCCCCCCCC----C-TTTTTTTTTTt
gi|127854                     : ACCA-GTGAA-CTTC--GC--TATT-TGT-ATGCAC--TGAGG-AACAT-GTAA-TAT-ATGACT-GAT--G-AC-
gi|127855                     : ACCA-GTGAACCTTC--GC--TATT-CGTGATGCG----GAGGTTACAT-GTAC-GGA-G-AACT-GAT--G-TC-TTTG-GAA-CA--CTT--GT-ACC---CT-GGAC-A-TCAG
gi|127856                     : ATCA-GTGAT-CTTC--GC--TATT-CGT-GTGCGC--TGAGG-gtttgctcgccccattttt
gi|127857                     :   CA-GTGAA-CTTC--GC--AATT-CGT-ATGCGC--CGAGG-AACAT-GTAA-TGT-GTAACT-GAT--G-ACGTTTG--AA-CA--CTT--GT-ACC---CT-GT-C-A-TCAGA----CCCC-CTCC----C-TTTGTTTTTT
gi|127858                     :    A-GTGAA-CTTC--GC--TATT-CGT-ATGCGC--TGAGG-AACAT-GTAA-TGA-ATGACT-GAT--G-AC-TTTG-AAA-CA--CTC--GT-ACC---CT-AT-C-A-TCAG-----CCCCCCTCCCTAGC-TTTGTTTt
gi|127859                     :    A-GTGAG-CTTC--GC--TATT-CGT-ATGCAC--TGAGG-AACAT-GTAA-TGT-ATAACT-GAT--G-AC-TTTG-AAA-CG--CTT--GT-ACC---CT-GT-C-A-TCAG-----CCACACCCC----CAATTGTTTT
gi|127860                     :    A-GTGAG-CTTC--GCCCTATT-CGT-ATGCAC--TGAGG-AACAT-GTAATTGT-ATAACT-GAT--G--C-TTTGAAAA-CG--CTT--GTCACCT--CT-GT-C-A-TCAG
gi|127861                     :                                                       -TAT-ATGACT-GAA--G-AA-TTTG-AAA-CA--CTT--GT-ATC---CT-GT-C-A-ccacaacccaccc





Alignments
lowQualScore                  :     2      2   33  33    2   2      333     2    2    2   2      2   33 2  2    4   2  2    66 2   666    7 2 4   2 999999 2   2    5555           
lowQualScore                  :     .      .   ..  ..    .   .      ...     .    .    .   .      .   .. .  .    .   .  .    .. .   ...    . . .   . ...... .   .    ....           
lowQualScore                  :     2      2   11  11    2   2      888     4    4    2   2      2   11 2  2    7   4  4    55 4   555    1 4 7   5 888888 7   7    7777           
consensus                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
Reference ( family-861 )      : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127843                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCCTCTCC----CTTTGTTTTTT
gi|127844                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TAT-ATGA-T-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGTGG-A-TCA-GG-----C-CCC-CTCT----CTTTGTTTTTT
gi|127845                     : ACCA-GTGA-C-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TAT-ATGACT-GATAGA-AC-TTTG-AAA-CA-CTTGGAT-ACC---CTGTGG-A-TCA-G------C-CCC-CTCT----CTTTGTTTGTTt
gi|127846                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGA-GA-ACAT-GTAA-TGT-GTGACT-GAT--GCAC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CT-C----CTTTGTTTTTTtt
gi|127847                     : ACCA-GTGAAC-T-C--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA--GT-GTGACT-GGT--G-AC-TTTG-AAA-CA-CTTC--T-ACCCTGCTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTTtt
gi|127848                     : ACCA-GTGATA-TTC--GC--AATT-TGT-ATGCGC--GGAGGA-ACAT-GTAA-TAT-G--ACT-GAT--G-AC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127849                     : ACCT-GTGAAC-TTC--GC--TATT-CGT-GTGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--A-AC-TTTG-AAATCG-ATCGTCT-AAC---CTGT-C-A-TCA-GAT----C-CCC-CTCC----CTTTGTTTGTTt
gi|127850                     : ACCA-GTGAAC-TGC--GC--TATT-TGT-AT-CAC--TGAGGA-ACAT-GTAA-TAT-ATGCGT-GAT--T-AC-TTTG-AAA-CA-CTTG--T-A-C---CTGT-TGA-TCA-GG-----C-CCC-CTCC----CTTTGGTTTt
gi|127851                     : ACCA-GTGAAT-TTC--GT--TATT-CAT-ATGAGC--TGAGGT-ACAC-ATAA---------CC-AAT--G-AC-TTTG-AAA-CA-TTTG--T-ACC---CTGT-C-ACTCA-CACACTCC-CCC-CCCC----CTTTTTTTTTTgtttt
gi|127852                     : ACCAAGTGAAC-TTC--GC--TCTT-CGT-ATGCG---CGAGGA-CCATGGCAA-TGTGGTGACTGGAT--G-AC-TTTGAAAA-CA-CTTC--T-ACC---CTG----G-TCACGA-----G-CCC-CCCC----CTTTGTTTT
gi|127853                     : ACCA-GTGAAC-TTCCCGC--TATTTCGT-ATGCGCAACGGGAT-ACAT--TAT-CGT-GTGACT-GAT--G--C-TTTG-AAA-CACCTTG--T-A-C---CTGT-C-ATTCA-GA-----C-CCC-CTCC----CTTTGTTTGTTgtttt
gi|127854                     : ACCA-GTGAAC-TTC--GC--TATT-TGT-ATGCAC--TGAGGA-ACAT-GTAA-TAT-ATGACT-GAT--G-AC-t
gi|127855                     : ACCA-GTGAACCTTC--GC--TATT-CGTGATGCG----GAGGTTACAT-GTAC-GGA-G-AACT-GAT--G-TC-TTTG-GAA-CA-CTTG--T-ACC---CTGGAC-A-TCA-GG-----T-TTG-CTCG----CCCCATTTTT
gi|127856                     : ATCA-GTGATC-TTC--GC--TATT-CGT-GTGCGC--TGAGG
gi|127857                     :   CA-GTGAAC-TTC--GC--AATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTAACT-GAT--G-ACGTTTG--AA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127858                     :    A-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TGA-ATGACT-GAT--G-AC-TTTG-AAA-CA-CTCG--T-ACC---CTAT-C-A-TCA-GC-----C-CCC-CTCCCTAGCTTTGTTTt
gi|127859                     :    A-GTGAGC-TTC--GC--TATT-CGT-ATGCAC--TGAGGA-ACAT-GTAA-TGT-ATAACT-GAT--G-AC-TTTG-AAA-CG-CTTG--T-ACC---CTGT-C-A-TCA-GC-----CACAC-CCCC----AATTGTTTT
gi|127860                     :    A-GTGAGC-TTC--GCCCTATT-CGT-ATGCAC--TGAGGA-ACAT-GTAATTGT-ATAACT-GAT--G--C-TTTGAAAA-CG-CTTG--TCACCT--CTGT-C-A-TCA-G
gi|127861                     :                                                       -TAT-ATGACT-GAA--G-AA-TTTG-AAA-CA-CTTG--T-ATC---CTGT-C-A-ccacaacccaccc





Alignments
lowQualScore                  :     2      2   33  33    2   2      333     2    2    2   2      2   33 2  2    4   2  2    66 2   666    7 2 4   2 999999 2   2    5555           
lowQualScore                  :     .      .   ..  ..    .   .      ...     .    .    .   .      .   .. .  .    .   .  .    .. .   ...    . . .   . ...... .   .    ....           
lowQualScore                  :     2      2   11  11    2   2      888     4    4    2   2      2   11 2  2    7   4  4    55 4   555    1 4 7   5 888888 7   7    7777           
consensus                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
Reference ( family-861 )      : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127843                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCCTCTCC----CTTTGTTTTTT
gi|127844                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TAT-ATGA-T-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGTGG-A-TCA-GG-----C-CCC-CTCT----CTTTGTTTTTT
gi|127845                     : ACCA-GTGA-C-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TAT-ATGACT-GATAGA-AC-TTTG-AAA-CA-CTTGGAT-ACC---CTGTGG-A-TCA-G------C-CCC-CTCT----CTTTGTTTGTTt
gi|127846                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGA-GA-ACAT-GTAA-TGT-GTGACT-GAT--GCAC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CT-C----CTTTGTTTTTTtt
gi|127847                     : ACCA-GTGAAC-T-C--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA--GT-GTGACT-GGT--G-AC-TTTG-AAA-CA-CTTC--T-ACCCTGCTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTTtt
gi|127848                     : ACCA-GTGATA-TTC--GC--AATT-TGT-ATGCGC--GGAGGA-ACAT-GTAA-TAT-G--ACT-GAT--G-AC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127849                     : ACCT-GTGAAC-TTC--GC--TATT-CGT-GTGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--A-AC-TTTG-AAATCG-ATCGTCT-AAC---CTGT-C-A-TCA-GAT----C-CCC-CTCC----CTTTGTTTGTTt
gi|127850                     : ACCA-GTGAAC-TGC--GC--TATT-TGT-AT-CAC--TGAGGA-ACAT-GTAA-TAT-ATGCGT-GAT--T-AC-TTTG-AAA-CA-CTTG--T-A-C---CTGT-TGA-TCA-GG-----C-CCC-CTCC----CTTTGGTTTt
gi|127851                     : ACCA-GTGAAT-TTC--GT--TATT-CAT-ATGAGC--TGAGGT-ACAC-ATAA---------CC-AAT--G-AC-TTTG-AAA-CA-TTTG--T-ACC---CTGT-C-ACTCA-CACACTCC-CCC-CCCC----CTTTTTTTTTTgtttt
gi|127852                     : ACCAAGTGAAC-TTC--GC--TCTT-CGT-ATGCG---CGAGGA-CCATGGCAA-TGTGGTGACTGGAT--G-AC-TTTGAAAA-CA-CTTC--T-ACC---CTG----G-TCACGA-----G-CCC-CCCC----CTTTGTTTT
gi|127853                     : ACCA-GTGAAC-TTCCCGC--TATTTCGT-ATGCGCAACGGGAT-ACAT--TAT-CGT-GTGACT-GAT--G--C-TTTG-AAA-CACCTTG--T-A-C---CTGT-C-ATTCA-GA-----C-CCC-CTCC----CTTTGTTTGTTgtttt
gi|127854                     : ACCA-GTGAAC-TTC--GC--TATT-TGT-ATGCAC--TGAGGA-ACAT-GTAA-TAT-ATGACT-GAT--G-AC-t
gi|127855                     : ACCA-GTGAACCTTC--GC--TATT-CGTGATGCG----GAGGTTACAT-GTAC-GGA-G-AACT-GAT--G-TC-TTTG-GAA-CA-CTTG--T-ACC---CTGGAC-A-TCA-GG-----T-TTG-CTCG----CCCCATTTTT
gi|127856                     : ATCA-GTGATC-TTC--GC--TATT-CGT-GTGCGC--TGAGG
gi|127857                     :   CA-GTGAAC-TTC--GC--AATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTAACT-GAT--G-ACGTTTG--AA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127858                     :    A-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TGA-ATGACT-GAT--G-AC-TTTG-AAA-CA-CTCG--T-ACC---CTAT-C-A-TCA-GC-----C-CCC-CTCCCTAGCTTTGTTTt
gi|127859                     :    A-GTGAGC-TTC--GC--TATT-CGT-ATGCAC--TGAGGA-ACAT-GTAA-TGT-ATAACT-GAT--G-AC-TTTG-AAA-CG-CTTG--T-ACC---CTGT-C-A-TCA-GC-----CACAC-CCCC----AATTGTTTT
gi|127860                     :    A-GTGAGC-TTC--GCCCTATT-CGT-ATGCAC--TGAGGA-ACAT-GTAATTGT-ATAACT-GAT--G--C-TTTGAAAA-CG-CTTG--TCACCT--CTGT-C-A-TCA-G
gi|127861                     :                                                       -TAT-ATGACT-GAA--G-AA-TTTG-AAA-CA-CTTG--T-ATC---CTGT-C-A-ccacaacccaccc


blockSeqs                     :     A      C   CC  CC    T   G      AAC     T    G    T   G      G   AG C  G    A   T  C    GA C   CTG    G G C   C ACACTC A   .    CTAG
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    A   .  .    TC .   T      G . T   . AT     .   .    .   
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      A . .   . G      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      C       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . A      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      C       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . A      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      G       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . A      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      C       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . G      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . A      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . A      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      C       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . G      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . A      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . C      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      C       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . C      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   . .      .   .    .   
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .   .                     
blockSeqs                     :     .      .   .   .     .   .      T       .    .    .   .      .   .  .  .    .   .  .    .  .   .      . . .                         
blockSeqs                     :     .      .   .   .     .   .      .                 .   .      .   .  .  .                                                            


blockSeqCons                  : 
originalCons                  : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
finalCons                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT





Alignments
lowQualScore                  :     2      2   33  33    2   2      333     2    2    2   2      2   33 2  2    4   2  2    66 2   666    7 2 4   2 999999 2   2    5555           
lowQualScore                  :     .      .   ..  ..    .   .      ...     .    .    .   .      .   .. .  .    .   .  .    .. .   ...    . . .   . ...... .   .    ....           
lowQualScore                  :     2      2   11  11    2   2      888     4    4    2   2      2   11 2  2    7   4  4    55 4   555    1 4 7   5 888888 7   7    7777           
consensus                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
Reference ( family-861 )      : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127843                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--G-AC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCCTCTCC----CTTTGTTTTTT
gi|127844                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TAT-ATGA-T-GAT--G-AC-TTTG-AAA-CA-CTTG--T-ACC---CTGTGG-A-TCA-GG-----C-CCC-CTCT----CTTTGTTTTTT
gi|127845                     : ACCA-GTGA-C-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TAT-ATGACT-GATAGA-AC-TTTG-AAA-CA-CTTGGAT-ACC---CTGTGG-A-TCA-G------C-CCC-CTCT----CTTTGTTTGTTt
gi|127846                     : ACCA-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--CGA-GA-ACAT-GTAA-TGT-GTGACT-GAT--GCAC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CT-C----CTTTGTTTTTTtt
gi|127847                     : ACCA-GTGAAC-T-C--GC--TATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA--GT-GTGACT-GGT--G-AC-TTTG-AAA-CA-CTTC--T-ACCCTGCTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTTtt
gi|127848                     : ACCA-GTGATA-TTC--GC--AATT-TGT-ATGCGC--GGAGGA-ACAT-GTAA-TAT-G--ACT-GAT--G-AC-TTTG-AAA-CA-CTTC--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127849                     : ACCT-GTGAAC-TTC--GC--TATT-CGT-GTGCGC--CGAGGA-ACAT-GTAA-TGT-GTGACT-GAT--A-AC-TTTG-AAATCG-ATCGTCT-AAC---CTGT-C-A-TCA-GAT----C-CCC-CTCC----CTTTGTTTGTTt
gi|127850                     : ACCA-GTGAAC-TGC--GC--TATT-TGT-AT-CAC--TGAGGA-ACAT-GTAA-TAT-ATGCGT-GAT--T-AC-TTTG-AAA-CA-CTTG--T-A-C---CTGT-TGA-TCA-GG-----C-CCC-CTCC----CTTTGGTTTt
gi|127851                     : ACCA-GTGAAT-TTC--GT--TATT-CAT-ATGAGC--TGAGGT-ACAC-ATAA---------CC-AAT--G-AC-TTTG-AAA-CA-TTTG--T-ACC---CTGT-C-ACTCA-CACACTCC-CCC-CCCC----CTTTTTTTTTTgtttt
gi|127852                     : ACCAAGTGAAC-TTC--GC--TCTT-CGT-ATGCG---CGAGGA-CCATGGCAA-TGTGGTGACTGGAT--G-AC-TTTGAAAA-CA-CTTC--T-ACC---CTG----G-TCACGA-----G-CCC-CCCC----CTTTGTTTT
gi|127853                     : ACCA-GTGAAC-TTCCCGC--TATTTCGT-ATGCGCAACGGGAT-ACAT--TAT-CGT-GTGACT-GAT--G--C-TTTG-AAA-CACCTTG--T-A-C---CTGT-C-ATTCA-GA-----C-CCC-CTCC----CTTTGTTTGTTgtttt
gi|127854                     : ACCA-GTGAAC-TTC--GC--TATT-TGT-ATGCAC--TGAGGA-ACAT-GTAA-TAT-ATGACT-GAT--G-AC-t
gi|127855                     : ACCA-GTGAACCTTC--GC--TATT-CGTGATGCG----GAGGTTACAT-GTAC-GGA-G-AACT-GAT--G-TC-TTTG-GAA-CA-CTTG--T-ACC---CTGGAC-A-TCA-GG-----T-TTG-CTCG----CCCCATTTTT
gi|127856                     : ATCA-GTGATC-TTC--GC--TATT-CGT-GTGCGC--TGAGG
gi|127857                     :   CA-GTGAAC-TTC--GC--AATT-CGT-ATGCGC--CGAGGA-ACAT-GTAA-TGT-GTAACT-GAT--G-ACGTTTG--AA-CA-CTTG--T-ACC---CTGT-C-A-TCA-GA-----C-CCC-CTCC----CTTTGTTTTTT
gi|127858                     :    A-GTGAAC-TTC--GC--TATT-CGT-ATGCGC--TGAGGA-ACAT-GTAA-TGA-ATGACT-GAT--G-AC-TTTG-AAA-CA-CTCG--T-ACC---CTAT-C-A-TCA-GC-----C-CCC-CTCCCTAGCTTTGTTTt
gi|127859                     :    A-GTGAGC-TTC--GC--TATT-CGT-ATGCAC--TGAGGA-ACAT-GTAA-TGT-ATAACT-GAT--G-AC-TTTG-AAA-CG-CTTG--T-ACC---CTGT-C-A-TCA-GC-----CACAC-CCCC----AATTGTTTT
gi|127860                     :    A-GTGAGC-TTC--GCCCTATT-CGT-ATGCAC--TGAGGA-ACAT-GTAATTGT-ATAACT-GAT--G--C-TTTGAAAA-CG-CTTG--TCACCT--CTGT-C-A-TCA-G
gi|127861                     :                                                       -TAT-ATGACT-GAA--G-AA-TTTG-AAA-CA-CTTG--T-ATC---CTGT-C-A-ccacaacccaccc