lowQualScore : 11111
lowQualScore : 2 88 33 444 2 2 2 2 2 77777777 2 22 2 2 222 2 6666666 22 11111 2 333 333 2
lowQualScore : . .. .. ... . . . . . ........ . .. . . ... . ....... .. ..... . ... ... .
lowQualScore : 7 88 77 777 5 5 2 2 1 66666666 1 99 1 1 999 1 8888888 99 22222 1 777 999 4
consensus : ATTATT-AT-TAT--TA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------C--AC----CAC-T---TTG---A-TGAG
Reference ( gi|76141 ) : ATTATT-AT-CAT--TA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------C--AT----CAC-T---TTG---A-TGAG
gi|76142 : ATTATC-AT-TAT--TA---T-GCT-TAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------C--AT----CAC-T---TTG---A-TGAG
gi|76143 : ATAATT-AT-TAT--TA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------T--AC----TAC-T---TTG---A-TGAG
gi|76144 : ATTATT-AT-TAT--TA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------C--AC----CAC-T---TTG---A-TAA
gi|76145 : ATTATT-AT-TAT--TA---T-GCT-GAGTGTC-CA-TAA-T--------G-CG--C-AT-T-A-AAAA-CACTTGATGTC--AC----CAC-T---TTG---A-TGAG
gi|76147 : ATTATTTAT-TAT--TA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------C--AC----CAC-T---TTG---A-
gi|76149 : ATTATT-AT-TAT--TA---T-GCC-GAGTGTC-CA-TGA-T--------G-TG--C-AT-T-A-AAAATCAC-------C--A-----CGC-T---TTA---ATTGAG
gi|76148 : ATTATT-AT-TAG--TA---T-GCT-GATTATC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAT-------C--AC----CGC-T---TTG---A-
gi|76151 : ATTATC-AT-CAT--CA---T-GCT-GAGTGGC-CA-TAT-T--------G-TA--C-AT-T-A-AAAA-CAG-------C--AC----CAC-T---TTG---A-
gi|76150 : ATTATT-AT-TAT--TA---T-GCT-GAGTGTC-CA-TAA-T--------GCTG--C-ATGT----AAA-CAC-------C--ATC---CGC-TTTGTTG---A-TGAG
gi|76146 : ATTATT-AT-TAT--TA---T-GCT-GAGTGTC-CA-TAA-T----------CG--CAAT-TAA-AAAA-CAC-------TTGATGTCACAC-T---TTG---A-TGAG
gi|76152 : ATTATT-AT-TAT--T----T-GTT-GATTGTC-CG-TAA-TTATTTTATA-TG--C-AT-T-A-AAA--CAC-------C--AC----CAC-T---
gi|76153 : TTATT-AT--AT--TA---TTGCT-GAGTGTC-CAATAA-T--------G-TGTAC-AT-T-A-AAAA-CAC-------C--AC----CAC-T---TTGCATA-TGAG
gi|76154 : TTATT-ATTCATGTTA---T-GCT-GAGTTTC-C---AA-T--------G-TG--C-A--T-A-AAAA-GA--------C--AC----CAC-T---TTG---A-
gi|76155 : ATT-AT-TAT--TA---T-GCT-AAGTGTT----TAA-T--------G-TG--C-AT-T-ACAAAA-CA--------C--AC----CAC-T---TTG---A-TGAG
gi|76156 : ATT-AT-TAT--TAAATT-GCTTGAGTGTCATA-TAAAT--------G-TG--C-AT-T-A-AAAA-CAC-------C--CT----TACCT---TTG---A-TGAG
gi|76157 : -GCC-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------C--AC----CAC-T---TTG---A-
gi|76158 : TC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-GAC-------C--AC----CAC-T---TTG---A-TGAG
gi|76159 : -CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------C--AC----CAC-T---TTG---
gi|76160 : AA-T--------G-TG--C-AT-T-A-AAAA-CAC-------C--AC----CAC-T---TTG---A-
Alignments
lowQualScore : 1111111
lowQualScore : 2 444 444 2 2 2 2 2 77777777 2 22 2 2 222 2 3333333 2 2 333 333 2
lowQualScore : . ... ... . . . . . ........ . .. . . ... . ....... . . ... ... .
lowQualScore : 5 444 444 4 4 1 1 0 22222222 0 88 0 0 444 0 0000000 0 0 555 777 2
consensus : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
Reference ( family-855 ) : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
gi|76141 : ATTATT-ATC---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-TCA-CT---TTG---A-TGAG
gi|76142 : ATTATC-ATT---ATTA---T-GCT-TAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-TCA-CT---TTG---A-TGAG
gi|76143 : ATAATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------TA-CTA-CT---TTG---A-TGAG
gi|76144 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------CA-CCA-CT---TTG---A-TAA
gi|76145 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-CG--C-AT-T-A-AAAA-CACTTGATGTCA-CCA-CT---TTG---A-TGAG
gi|76146 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T----------CG--CAAT-TAA-AAAA-CACTTGATGTCA--CA-CT---TTG---A-TGAG
gi|76147 : ATTATTTATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------CA-CCA-CT---TTG---A-
gi|76148 : ATTATT-ATT---AGTA---T-GCT-GATTATC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAT-------CA-CCG-CT---TTG---A-
gi|76149 : ATTATT-ATT---ATTA---T-GCC-GAGTGTC-CA-TGA-T--------G-TG--C-AT-T-A-AAAATCAC-------CA--CG-CT---TTA---ATTGAG
gi|76150 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------GCTG--C-ATGT----AAA-CAC-------CATCCG-CTTTGTTG---A-TGAG
gi|76151 : ATTATC-ATC---ATCA---T-GCT-GAGTGGC-CA-TAT-T--------G-TA--C-AT-T-A-AAAA-CAG-------CA-CCA-CT---TTG---A-
gi|76152 : ATTATT-ATT---ATT----T-GTT-GATTGTC-CG-TAA-TTATTTTATA-TG--C-AT-T-A-AAA--CAC-------CA-CCA-CT---
gi|76153 : TTATT-AT----ATTA---TTGCT-GAGTGTC-CAATAA-T--------G-TGTAC-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTGCATA-TGAG
gi|76154 : TTATT-ATTCATGTTA---T-GCT-GAGTTTC-C---AA-T--------G-TG--C-A--T-A-AAAA-GA--------CA-CCA-CT---TTG---A-
gi|76155 : ATT-ATT---ATTA---T-GCT-AAGTGTT----TAA-T--------G-TG--C-AT-T-ACAAAA-CA--------CA-CCA-CT---TTG---A-TGAG
gi|76156 : ATT-ATT---ATTAAATT-GCTTGAGTGTCATA-TAAAT--------G-TG--C-AT-T-A-AAAA-CAC-------CC-TTACCT---TTG---A-TGAG
gi|76157 : -GCC-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-
gi|76158 : TC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-GAC-------CA-CCA-CT---TTG---A-TGAG
gi|76159 : -CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---
gi|76160 : AA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-
Alignments
lowQualScore : 1111111
lowQualScore : 2 444 444 2 2 2 2 2 77777777 2 22 2 2 222 2 3333333 2 2 333 333 2
lowQualScore : . ... ... . . . . . ........ . .. . . ... . ....... . . ... ... .
lowQualScore : 5 444 444 4 4 1 1 0 22222222 0 88 0 0 444 0 0000000 0 0 555 777 2
consensus : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
Reference ( family-855 ) : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
gi|76141 : ATTATT-ATC---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-TCA-CT---TTG---A-TGAG
gi|76142 : ATTATC-ATT---ATTA---T-GCT-TAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-TCA-CT---TTG---A-TGAG
gi|76143 : ATAATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------TA-CTA-CT---TTG---A-TGAG
gi|76144 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------CA-CCA-CT---TTG---A-TAA
gi|76145 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-CG--C-AT-T-A-AAAA-CACTTGATGTCA-CCA-CT---TTG---A-TGAG
gi|76146 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T----------CG--CAAT-TAA-AAAA-CACTTGATGTCA--CA-CT---TTG---A-TGAG
gi|76147 : ATTATTTATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------CA-CCA-CT---TTG---A-
gi|76148 : ATTATT-ATT---AGTA---T-GCT-GATTATC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAT-------CA-CCG-CT---TTG---A-
gi|76149 : ATTATT-ATT---ATTA---T-GCC-GAGTGTC-CA-TGA-T--------G-TG--C-AT-T-A-AAAATCAC-------CA--CG-CT---TTA---ATTGAG
gi|76150 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------GCTG--C-ATGT----AAA-CAC-------CATCCG-CTTTGTTG---A-TGAG
gi|76151 : ATTATC-ATC---ATCA---T-GCT-GAGTGGC-CA-TAT-T--------G-TA--C-AT-T-A-AAAA-CAG-------CA-CCA-CT---TTG---A-
gi|76152 : ATTATT-ATT---ATT----T-GTT-GATTGTC-CG-TAA-TTATTTTATA-TG--C-AT-T-A-AAA--CAC-------CA-CCA-CT---
gi|76153 : TTATT-AT----ATTA---TTGCT-GAGTGTC-CAATAA-T--------G-TGTAC-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTGCATA-TGAG
gi|76154 : TTATT-ATTCATGTTA---T-GCT-GAGTTTC-C---AA-T--------G-TG--C-A--T-A-AAAA-GA--------CA-CCA-CT---TTG---A-
gi|76155 : ATT-ATT---ATTA---T-GCT-AAGTGTT----TAA-T--------G-TG--C-AT-T-ACAAAA-CA--------CA-CCA-CT---TTG---A-TGAG
gi|76156 : ATT-ATT---ATTAAATT-GCTTGAGTGTCATA-TAAAT--------G-TG--C-AT-T-A-AAAA-CAC-------CC-TTACCT---TTG---A-TGAG
gi|76157 : -GCC-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-
gi|76158 : TC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-GAC-------CA-CCA-CT---TTG---A-TGAG
gi|76159 : -CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---
gi|76160 : AA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-
blockSeqs : T CAT AAT T T A A A TATTTTAT C TA A G AA T TTGATGT T C TTG CAT T
blockSeqs : . . . . . . . . . . . . . AC . TTGATGT . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqCons :
originalCons : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
finalCons : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
Alignments
lowQualScore : 1111111
lowQualScore : 2 444 444 2 2 2 2 2 77777777 2 22 2 2 222 2 3333333 2 2 333 333 2
lowQualScore : . ... ... . . . . . ........ . .. . . ... . ....... . . ... ... .
lowQualScore : 5 444 444 4 4 1 1 0 22222222 0 88 0 0 444 0 0000000 0 0 555 777 2
consensus : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
Reference ( family-855 ) : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-TGAG
gi|76141 : ATTATT-ATC---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-TCA-CT---TTG---A-TGAG
gi|76142 : ATTATC-ATT---ATTA---T-GCT-TAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-TCA-CT---TTG---A-TGAG
gi|76143 : ATAATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------TA-CTA-CT---TTG---A-TGAG
gi|76144 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------CA-CCA-CT---TTG---A-TAA
gi|76145 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-CG--C-AT-T-A-AAAA-CACTTGATGTCA-CCA-CT---TTG---A-TGAG
gi|76146 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T----------CG--CAAT-TAA-AAAA-CACTTGATGTCA--CA-CT---TTG---A-TGAG
gi|76147 : ATTATTTATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T---AAAA-CAC-------CA-CCA-CT---TTG---A-
gi|76148 : ATTATT-ATT---AGTA---T-GCT-GATTATC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAT-------CA-CCG-CT---TTG---A-
gi|76149 : ATTATT-ATT---ATTA---T-GCC-GAGTGTC-CA-TGA-T--------G-TG--C-AT-T-A-AAAATCAC-------CA--CG-CT---TTA---ATTGAG
gi|76150 : ATTATT-ATT---ATTA---T-GCT-GAGTGTC-CA-TAA-T--------GCTG--C-ATGT----AAA-CAC-------CATCCG-CTTTGTTG---A-TGAG
gi|76151 : ATTATC-ATC---ATCA---T-GCT-GAGTGGC-CA-TAT-T--------G-TA--C-AT-T-A-AAAA-CAG-------CA-CCA-CT---TTG---A-
gi|76152 : ATTATT-ATT---ATT----T-GTT-GATTGTC-CG-TAA-TTATTTTATA-TG--C-AT-T-A-AAA--CAC-------CA-CCA-CT---
gi|76153 : TTATT-AT----ATTA---TTGCT-GAGTGTC-CAATAA-T--------G-TGTAC-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTGCATA-TGAG
gi|76154 : TTATT-ATTCATGTTA---T-GCT-GAGTTTC-C---AA-T--------G-TG--C-A--T-A-AAAA-GA--------CA-CCA-CT---TTG---A-
gi|76155 : ATT-ATT---ATTA---T-GCT-AAGTGTT----TAA-T--------G-TG--C-AT-T-ACAAAA-CA--------CA-CCA-CT---TTG---A-TGAG
gi|76156 : ATT-ATT---ATTAAATT-GCTTGAGTGTCATA-TAAAT--------G-TG--C-AT-T-A-AAAA-CAC-------CC-TTACCT---TTG---A-TGAG
gi|76157 : -GCC-GAGTGTC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-
gi|76158 : TC-CA-TAA-T--------G-TG--C-AT-T-A-AAAA-GAC-------CA-CCA-CT---TTG---A-TGAG
gi|76159 : -CA-TAA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---
gi|76160 : AA-T--------G-TG--C-AT-T-A-AAAA-CAC-------CA-CCA-CT---TTG---A-