lowQualScore                  :                                                      111                                                     2222222       111    1111111                 1         
lowQualScore                  :     2  33 4   2 33   2 4      2   2    33 33  2    2 000  2  2 2        2    5   2     66  2  2   5     33   0000000   3 3 111 3  0000000 3          7777 6         
lowQualScore                  :     .  .. .   . ..   . .      .   .    .. ..  .    . ...  .  . .        .    .   .     ..  .  .   .     ..   .......   . . ... .  ....... .          .... .         
lowQualScore                  :     5  44 7   4 22   4 7      4   4    11 11  2    9 000  9  9 9        9    7   9     88  9  9   7     99   0000000   1 1 666 1  5555555 1          7777 7         
consensus                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG-C-A-T-C-TT----TT-A-TAAATTATTC----AATTATGAAAT
Reference ( gi|127711 )       : GTAT-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG-C-A-C-C-TT----TC-A-TAAATTATTC----ATTTATGAAAT
gi|127713                     : GTAT-TA--T-GTC-C--CAA-A-CTGA-T-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTTC--ATC-------TAG-C-A-T-C-TT----TTAA-TAAATCTTTC----A-TTATGAAA
gi|127712                     : GTAA-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-ATTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------AGG-T-ATC-T-TT----TT-A-TAATTTATTC----AATTATGAAAT
gi|127715                     : GTAT-TA--T-GGT-C--CAA-A-CTGACT-GTG--AAC--G--AA-TTTAGT---CCGCG-C-TGAAGACC-TTTAAGGATAATTT--AG-TC-AGA-TTTCA--ATC-------TAG-C-A-T-C-TT----TT-A-TAAATTAT
gi|127714                     : GTAT-TA--C-GTC-C--CAA-A-ATGACT-GTG-TATG--A--AA-TTTA-T---CC-TG-C-TGAA-ACC-TTTA-GGA-AATTT--AG-TC-AGATTTTCA--ATC-------GTG-C-A-T-C-TT----TT-A--AAATTATTC----AATTATGAAATgaaat
gi|127716                     : GTAT-TAAAT-GTC-C--CAA-A-CTGACT-GTG-TAAC--GGAAA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-ACTTTTAAG-TCAAAA-TTTCA--ATC-------TAG-C-A-T-C-TTTATCTT-A-TAAATTCTTC----A
gi|127717                     : GTAT-TA--TTGTCAC--CAA-AACTGACT-GTG-TAAC--G--AAATTTA-TATTCC-CG-C-TGAAGACC-TTTA-GCA-AATTTA-AG-TC-AGA-TTTCA--ATCTACCCGGTAG-CAA-T-C-TTG---TT-A-TAAATTA-TC----AATTATGCAATacttgaa
gi|127718                     : GTGT-TA--T-GTC-CTCCAACA-CTGAC--GC--TAAC--G--AA-TTAT-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AGTTC-AGATTTTTAACACC-------TAG-C-A-TGC-TT----TT-ACTAAATTATTC----A
gi|127719                     : GTAT-TG--T-GTC-C--CAA-G-CTAACG-GTG-TAAC--A--CA-TGTT-T---CC-CG-C-TGAACACC-TTTG-GGA-AATTT--AC-TC-AGA-TTTCA--ATa
gi|127720                     : GTATATA--T-GTC-C---AA-A-CTGACT-GTGGTAATTGG--AA-TCTA-TATCCC-CGTC-TGAAGACC-TTTA-GGA-AA-----A-----AGA-TTTTG--GT---------AG-C-A-T-C-TT----TT-A-TAAATTGTCC----AATTATGAAAT
gi|127723                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--C--AA-T
gi|127722                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127721                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127724                     :  TAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--A--AA-T
gi|127725                     :   AT-CA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTT-GGA-AATTT--AG-TC-AGA-TTTCA--ACC-------TAG-C-A-T-CATT----TT-A-TAAATTATTC----AATTATGAAAT
gi|127726                     :    T-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---AC-CG-C-TGAAGACC-TTTA-GGA-ATTTT--AA-TC-ATA-TTTCA--ATC-------TAG-C-A-T-C-TT----TT-A-TAAATTAT
gi|127727                     :    T-TA--TTGTC-C--AAA-AACTGACTTGTG-TAAC--G--AA-TTTA-T---CC-CG-CGTATAGACCCTTTATAGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAGTT-A-G-T-TC----AC-A-TACTTTATTCCTCAATTT-TGAAAgaaat
gi|127728                     :           -GTC-A--CTA-A-CTAACT-GTG-TAAC--G--AA-TTGA-T---CA-CG-T-CGAAGACC-TCTA-
gi|127729                     :                                       C--G--AA-TTTA-T---CC-CG-T-TGAAGGCC-TTTA-TAC-AATTT--GT-TC-GGA-TTTCA--A---------TAG-C-A-T-C-TT----TT-A-TAAATTATTC----AATTTTGATAT
gi|127730                     :                                                                                  -AATTT--AG-TC-AGA-TTTCA--ATCTACCCGGTAG-C-A-T-C-TT----TT-A-TAAATTA-TC----AATTATGAAAT





Alignments
lowQualScore                  :                                                                                                              1111111   11111111                                       
lowQualScore                  :     2  7777   2 33   2 4      2   2    22 22  2    2 999  2  2 2        2    5   2     66  2  2   5     33   8888888   00000000 2  5 5  8888  2 2              0      
lowQualScore                  :     .  ....   . ..   . .      .   .    .. ..  .    . ...  .  . .        .    .   .     ..  .  .   .     ..   .......   ........ .  . .  ....  . .              .      
lowQualScore                  :     4  3333   2 11   2 4      2   2    99 99  1    7 333  7  7 7        7    3   7     33  7  7   3     77   6666666   44444444 9  7 7  9999  9 9              2      
consensus                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT
Reference ( family-854 )      : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT
gi|127711                     : GTAT-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AC-C-TT----TC-A-TAAATTATTCATTTATGAAAT
gi|127712                     : GTAA-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-ATTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------AGG--------T-AT-CTTT----TT-A-TAATTTATTCAATTATGAAAT
gi|127713                     : GTAT-TA--T-GTC-C--CAA-A-CTGA-T-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTTC--ATC-------TAG--------C-AT-C-TT----TTAA-TAAATCTTTC-ATTATGAAA
gi|127714                     : GTAT-TA--C-GTC-C--CAA-A-ATGACT-GTG-TATG--A--AA-TTTA-T---CC-TG-C-TGAA-ACC-TTTA-GGA-AATTT--AG-TC-AGATTTTCA--ATC-------GTG--------C-AT-C-TT----TT-A--AAATTATTCAATTATGAAAT
gi|127715                     : GTAT-TA--T-GGT-C--CAA-A-CTGACT-GTG--AAC--G--AA-TTTAGT---CCGCG-C-TGAAGACC-TTTAAGGATAATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTAT
gi|127716                     : GTAT-TAAAT-GTC-C--CAA-A-CTGACT-GTG-TAAC--GGAAA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-ACTTTTAAG-TCAAAA-TTTCA--ATC-------TAG--------C-AT-C-TTTATCTT-A-TAAATTCTTCAACT-TGAAgaaat
gi|127717                     : GTAT-TA--TTGTCAC--CAA-AACTGACT-GTG-TAAC--G--AAATTTA-TATTCC-CG-C-TGAAGACC-TTTA-GCA-AATTTA-AG-TC-AGA-TTTCA--ATCTACCCGGTAG--------CAAT-C-TTG---TT-A-TAAATTA-TCAATTATGCAAT
gi|127718                     : GTGT-TA--T-GTC-CTCCAACA-CTGAC--GC--TAAC--G--AA-TTAT-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AGTTC-AGATTTTTAACACC-------TAG--------C-ATGC-TT----TT-ACTAAATTATTCAA
gi|127719                     : GTAT-TG--T-GTC-C--CAA-G-CTAACG-GTG-TAAC--A--CA-TGTT-T---CC-CG-C-TGAACACC-TTTG-GGA-AATTT--AC-TC-AGA-TTTCA--AT
gi|127720                     : GTATATA--T-GTC-C---AA-A-CTGACT-GTGGTAATTGG--AA-TCTA-TATCCC-CGTC-TGAAGACC-TTTA-GGA-AA-----A-----AGA-TTTTG--GT---------AG--------C-AT-C-TT----TT-A-TAAATTGTCCAATTATGAAAT
gi|127721                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127722                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127723                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--C--AA-T
gi|127724                     :  TAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--A--AA-T
gi|127725                     :   AT-CA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTT-GGA-AATTT--AG-TC-AGA-TTTCA--ACC-------TAG--------C-AT-CATT----TT-A-TAAATTATTCAATTATGAAAT
gi|127726                     :    T-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---AC-CG-C-TGAAGACC-TTTA-GGA-ATTTT--AA-TC-ATA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTAT
gi|127727                     :  TAT-T-----GTC-C--AAA-AACTGACTTGTG-TAAC--G--AA-TTTA-T---CC-CG-CGTATAGACCCTTTATAGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAGTTAGTTCAC-ATAC-TT----T-------ATTCCTCAATTTTGAAAgaaat
gi|127728                     :          t-GTC-A--CTA-A-CTAACT-GTG-TAAC--G--AA-TTGA-T---CA-CG-T-CGAAGACC-TCTA-
gi|127729                     :                                       C--G--AA-TTTA-T---CC-CG-T-TGAAGGCC-TTTA-TAC-AATTT--GT-TC-GGA-TTTCA--A---------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTTTGATAT
gi|127730                     :                                                                                  -AATTT--AG-TC-AGA-TTTCA--ATCTACCCGGTAG--------C-AT-C-TT----TT-A-TAAATTA-TCAATTATGAAAT





Alignments
lowQualScore                  :                                                                                                              1111111   11111111                                       
lowQualScore                  :     2  7777   2 33   2 4      2   2    22 22  2    2 999  2  2 2        2    5   2     66  2  2   5     33   8888888   00000000 2  5 5  8888  2 2              0      
lowQualScore                  :     .  ....   . ..   . .      .   .    .. ..  .    . ...  .  . .        .    .   .     ..  .  .   .     ..   .......   ........ .  . .  ....  . .              .      
lowQualScore                  :     4  3333   2 11   2 4      2   2    99 99  1    7 333  7  7 7        7    3   7     33  7  7   3     77   6666666   44444444 9  7 7  9999  9 9              2      
consensus                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT
Reference ( family-854 )      : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT
gi|127711                     : GTAT-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AC-C-TT----TC-A-TAAATTATTCATTTATGAAAT
gi|127712                     : GTAA-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-ATTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------AGG--------T-AT-CTTT----TT-A-TAATTTATTCAATTATGAAAT
gi|127713                     : GTAT-TA--T-GTC-C--CAA-A-CTGA-T-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTTC--ATC-------TAG--------C-AT-C-TT----TTAA-TAAATCTTTC-ATTATGAAA
gi|127714                     : GTAT-TA--C-GTC-C--CAA-A-ATGACT-GTG-TATG--A--AA-TTTA-T---CC-TG-C-TGAA-ACC-TTTA-GGA-AATTT--AG-TC-AGATTTTCA--ATC-------GTG--------C-AT-C-TT----TT-A--AAATTATTCAATTATGAAAT
gi|127715                     : GTAT-TA--T-GGT-C--CAA-A-CTGACT-GTG--AAC--G--AA-TTTAGT---CCGCG-C-TGAAGACC-TTTAAGGATAATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTAT
gi|127716                     : GTAT-TAAAT-GTC-C--CAA-A-CTGACT-GTG-TAAC--GGAAA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-ACTTTTAAG-TCAAAA-TTTCA--ATC-------TAG--------C-AT-C-TTTATCTT-A-TAAATTCTTCAACT-TGAAgaaat
gi|127717                     : GTAT-TA--TTGTCAC--CAA-AACTGACT-GTG-TAAC--G--AAATTTA-TATTCC-CG-C-TGAAGACC-TTTA-GCA-AATTTA-AG-TC-AGA-TTTCA--ATCTACCCGGTAG--------CAAT-C-TTG---TT-A-TAAATTA-TCAATTATGCAAT
gi|127718                     : GTGT-TA--T-GTC-CTCCAACA-CTGAC--GC--TAAC--G--AA-TTAT-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AGTTC-AGATTTTTAACACC-------TAG--------C-ATGC-TT----TT-ACTAAATTATTCAA
gi|127719                     : GTAT-TG--T-GTC-C--CAA-G-CTAACG-GTG-TAAC--A--CA-TGTT-T---CC-CG-C-TGAACACC-TTTG-GGA-AATTT--AC-TC-AGA-TTTCA--AT
gi|127720                     : GTATATA--T-GTC-C---AA-A-CTGACT-GTGGTAATTGG--AA-TCTA-TATCCC-CGTC-TGAAGACC-TTTA-GGA-AA-----A-----AGA-TTTTG--GT---------AG--------C-AT-C-TT----TT-A-TAAATTGTCCAATTATGAAAT
gi|127721                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127722                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127723                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--C--AA-T
gi|127724                     :  TAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--A--AA-T
gi|127725                     :   AT-CA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTT-GGA-AATTT--AG-TC-AGA-TTTCA--ACC-------TAG--------C-AT-CATT----TT-A-TAAATTATTCAATTATGAAAT
gi|127726                     :    T-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---AC-CG-C-TGAAGACC-TTTA-GGA-ATTTT--AA-TC-ATA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTAT
gi|127727                     :  TAT-T-----GTC-C--AAA-AACTGACTTGTG-TAAC--G--AA-TTTA-T---CC-CG-CGTATAGACCCTTTATAGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAGTTAGTTCAC-ATAC-TT----T-------ATTCCTCAATTTTGAAAgaaat
gi|127728                     :          t-GTC-A--CTA-A-CTAACT-GTG-TAAC--G--AA-TTGA-T---CA-CG-T-CGAAGACC-TCTA-
gi|127729                     :                                       C--G--AA-TTTA-T---CC-CG-T-TGAAGGCC-TTTA-TAC-AATTT--GT-TC-GGA-TTTCA--A---------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTTTGATAT
gi|127730                     :                                                                                  -AATTT--AG-TC-AGA-TTTCA--ATCTACCCGGTAG--------C-AT-C-TT----TT-A-TAAATTA-TCAATTATGAAAT


blockSeqs                     :     A  AAT    A TC   C A      T   G    TG GA  A    G ATT  G  T G        C    A   T     TA  T  A   T     AC   TACCCGG   TTAGTTCA A  G T  TATC  A C
blockSeqs                     :     .  TT     . .    . A      .   .    .  .   .    . ATC  .  . .        .    T   .     A   .  .   T     .    TACCCGG   .        .  A A  G     . .
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  C      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  C      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  C      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  C      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  C      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .    .         .        .  . .  .     . .
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .    . .    .  . .        .    .   .     .   .  .   .     .                                        
blockSeqs                     :     .  T      . .    . .      .   .    .  .   .                                                                                                  
blockSeqs                     :     .  .      . .    . .      .   .    .  .   .                                                                                                  
blockSeqs                     :               . .    . .      .   .    .  .   .                                                                                                  
blockSeqs                     :                                        .  .   .                                                                                                  


blockSeqCons                  : 
originalCons                  : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT
finalCons                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT





Alignments
lowQualScore                  :                                                                                                              1111111   11111111                                       
lowQualScore                  :     2  7777   2 33   2 4      2   2    22 22  2    2 999  2  2 2        2    5   2     66  2  2   5     33   8888888   00000000 2  5 5  8888  2 2              0      
lowQualScore                  :     .  ....   . ..   . .      .   .    .. ..  .    . ...  .  . .        .    .   .     ..  .  .   .     ..   .......   ........ .  . .  ....  . .              .      
lowQualScore                  :     4  3333   2 11   2 4      2   2    99 99  1    7 333  7  7 7        7    3   7     33  7  7   3     77   6666666   44444444 9  7 7  9999  9 9              2      
consensus                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT
Reference ( family-854 )      : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTATGAAAT
gi|127711                     : GTAT-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AC-C-TT----TC-A-TAAATTATTCATTTATGAAAT
gi|127712                     : GTAA-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-ATTA-GGA-AATTT--AG-TC-AGA-TTTCA--ATC-------AGG--------T-AT-CTTT----TT-A-TAATTTATTCAATTATGAAAT
gi|127713                     : GTAT-TA--T-GTC-C--CAA-A-CTGA-T-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AG-TC-AGA-TTTTC--ATC-------TAG--------C-AT-C-TT----TTAA-TAAATCTTTC-ATTATGAAA
gi|127714                     : GTAT-TA--C-GTC-C--CAA-A-ATGACT-GTG-TATG--A--AA-TTTA-T---CC-TG-C-TGAA-ACC-TTTA-GGA-AATTT--AG-TC-AGATTTTCA--ATC-------GTG--------C-AT-C-TT----TT-A--AAATTATTCAATTATGAAAT
gi|127715                     : GTAT-TA--T-GGT-C--CAA-A-CTGACT-GTG--AAC--G--AA-TTTAGT---CCGCG-C-TGAAGACC-TTTAAGGATAATTT--AG-TC-AGA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTAT
gi|127716                     : GTAT-TAAAT-GTC-C--CAA-A-CTGACT-GTG-TAAC--GGAAA-TTTA-T---CC-CG-C-TGAAGACC-TTTA-GGA-ACTTTTAAG-TCAAAA-TTTCA--ATC-------TAG--------C-AT-C-TTTATCTT-A-TAAATTCTTCAACT-TGAAgaaat
gi|127717                     : GTAT-TA--TTGTCAC--CAA-AACTGACT-GTG-TAAC--G--AAATTTA-TATTCC-CG-C-TGAAGACC-TTTA-GCA-AATTTA-AG-TC-AGA-TTTCA--ATCTACCCGGTAG--------CAAT-C-TTG---TT-A-TAAATTA-TCAATTATGCAAT
gi|127718                     : GTGT-TA--T-GTC-CTCCAACA-CTGAC--GC--TAAC--G--AA-TTAT-T---CC-CG-C-TGAAGACC-TTTA-GGA-AATTT--AGTTC-AGATTTTTAACACC-------TAG--------C-ATGC-TT----TT-ACTAAATTATTCAA
gi|127719                     : GTAT-TG--T-GTC-C--CAA-G-CTAACG-GTG-TAAC--A--CA-TGTT-T---CC-CG-C-TGAACACC-TTTG-GGA-AATTT--AC-TC-AGA-TTTCA--AT
gi|127720                     : GTATATA--T-GTC-C---AA-A-CTGACT-GTGGTAATTGG--AA-TCTA-TATCCC-CGTC-TGAAGACC-TTTA-GGA-AA-----A-----AGA-TTTTG--GT---------AG--------C-AT-C-TT----TT-A-TAAATTGTCCAATTATGAAAT
gi|127721                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127722                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--T--AA-T
gi|127723                     : GTAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--C--AA-T
gi|127724                     :  TAT-TA--C-GTC-C--CAA-A-CTGACT-GTG-TAAC--A--AA-T
gi|127725                     :   AT-CA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---CC-CG-C-TGAAGACC-TTTT-GGA-AATTT--AG-TC-AGA-TTTCA--ACC-------TAG--------C-AT-CATT----TT-A-TAAATTATTCAATTATGAAAT
gi|127726                     :    T-TA--T-GTC-C--CAA-A-CTGACT-GTG-TAAC--G--AA-TTTA-T---AC-CG-C-TGAAGACC-TTTA-GGA-ATTTT--AA-TC-ATA-TTTCA--ATC-------TAG--------C-AT-C-TT----TT-A-TAAATTAT
gi|127727                     :  TAT-T-----GTC-C--AAA-AACTGACTTGTG-TAAC--G--AA-TTTA-T---CC-CG-CGTATAGACCCTTTATAGA-AATTT--AG-TC-AGA-TTTCA--ATC-------TAGTTAGTTCAC-ATAC-TT----T-------ATTCCTCAATTTTGAAAgaaat
gi|127728                     :          t-GTC-A--CTA-A-CTAACT-GTG-TAAC--G--AA-TTGA-T---CA-CG-T-CGAAGACC-TCTA-
gi|127729                     :                                       C--G--AA-TTTA-T---CC-CG-T-TGAAGGCC-TTTA-TAC-AATTT--GT-TC-GGA-TTTCA--A---------TAG--------C-AT-C-TT----TT-A-TAAATTATTCAATTTTGATAT
gi|127730                     :                                                                                  -AATTT--AG-TC-AGA-TTTCA--ATCTACCCGGTAG--------C-AT-C-TT----TT-A-TAAATTA-TCAATTATGAAAT