lowQualScore                  :         11                                                                                                                                   
lowQualScore                  :         11   2  55   2   2   4               4 2       2 2   4 2   55 2      4    333 2   2 2    77   22    555 22 4     66    2 33    2     
lowQualScore                  :         ..   .  ..   .   .   .               . .       . .   . .   .. .      .    ... .   . .    ..   ..    ... .. .     ..    . ..    .     
lowQualScore                  :         77   7  66   4   2   4               4 1       1 1   2 1   00 1      2    777 1   1 1    44   99    888 99 2     11    2 11    4     
consensus                     : TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
Reference ( gi|103325 )       : TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103326                     : TTTTTTAA--TGC-AT--TT--AAC-AAG-CATTCATATATGAA--A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTT---A--A-TATTC--ACAT-T--AGTG-ATTTT
gi|103327                     : TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAACAA-TATTATG-C-GAG-T-TTG--A-ATGAAATAAT----A-CAA-G-TCAA-TTTA--TTTT---AATA-TATTC--ATAT-T--AGTG-ATTTT
gi|103328                     : TTTTTTAAA-TGT-AT--TTT-AAC-AAG-CA-TCATATATGAAG-ATTATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTTAAAA--A-TATTC--ATAT-T--AGTG-GTTT
gi|103329                     : TTTTTTAAC-TGC-ATA-TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAGCT-TTA--A-ATGAAA-AATTTCAA-CAA-GTTCAA-ATTT--TTTA---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103331                     : TTTTTTTA--TGC-AT--TTTTAAC-AAG-CATTCATATATGAAC-A-T--TATG-C-GAG-T-TTT--A--CGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--AGTA-TC--ATAT-T--AGTG-ATTT
gi|103330                     : TTTTTTAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAATTA-TATTATG-C-AAG-T-TTG--A-ATGAAA-AATC---A-AGA-G-TCAA-A-TT--TTAG---A--A-TATTC--ATAT-T--AGTG-GTATT
gi|103332                     : TTTTTTAAA-TCC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TAATATG-CCGAG-T-TTG--A-ATGAAA---TC---A-GAA-G-TCAA-ATTT--TTTT---A--A-TATTC--AT-T-T--AGTG-AATTT
gi|103333                     : TTTTTTAA--TGC-AT--TTT-AAC-AA--CATTCATATATGAAC-A-TATT-TG-C-GAG-T------A-ATG-AA-AATC---A-CAA-G-TCAA-A-TT--TTAT---A--T-TATTC--ATAT-T--AGTG-ATT
gi|103334                     : TTTCTTAA--TGCTATCCTTT-A-C-AAG-CATCTATATGAGAAT-A-TATTATG-C-GAG-T-TTGC-A-ACTGAA-AATC---A-CAA-G-TC-A-ATTA--TTTT---A--A--ATTC--ATAT-TTCAGTG-ATTTT
gi|103335                     : TTTTTTAAAATGT-AT--TTT-AACCAAG-CATCCATATGTGAA--A-TAT-ATG-A-AAG-T-TTG--A-ATGAAATAATC---AACAAAG-TAGA-ATTT--TTAA---A--A-TATTC--ATAT-A--AGTG-GT
gi|103336                     :  TTTTTAA--TGC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TATTATG-C-GAG-T-TTGAAA-ATGAAA-AATC---A-CAA-G--CAA-TTTT--TTTT---T--A-TATTC--ATAT-T--AGTGAATTTT
gi|103337                     :  TTTTTAA--TGT-AT--TT--AAC-AAG-CTTTCATATTTGAAC-A-TATTATG-C-GAG-TGTTG--A-ATGAAA-AATC---A-CAA-G-TCAAGA--T--TTTT---A--A-TATTCATATAT-T--AGTG-ATTT
gi|103338                     :  TTTTTAA--TGT-AT--TTT-AAC-A----ATTACTATATGAAC-A--ATTATGCC-GAG---TTG--A-A--GAA-AACC---G--AA-G-T-AA-TTTT--TTTT---A--A-TATTCTAATATGT--A-CG-ATTTT
gi|103340                     :   TTTAAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAG-T-TTG--A-ATGAAA-AATC---G-GAA-G-TCAA-ATTT--TTAG---A--A-TATTC--ATAT-T--
gi|103341                     :       AA--TGT-AT--TTT-AAC-AAG-CATTCATAAATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AA--------------------------TT---A--A-T------ATAT-T--AGTG-GTTTT
gi|103339                     :                T--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-AAG-T-TTG--A-AT------ATC---A-CAA-G-TCAA-TTTT--TTTTA--A--A-TATTC--ATAT-T--AGTG-GTTTT
gi|103343                     :      ttttataagtT--TTT-AAC-AAA-CAT-CATATATGAAC-A-TATTATG-C-GAGTT-TTG--ACATGAAA-AGTC---A-CAA-G-TCAATTTTT--TTTT---A--A-TTGTC--GTTT-T--AGTG-GTTT
gi|103342                     :                        AC-AAG-TATTCACATAAAAAC-A-TAAAATA-T-GAG-T-TTG--G-ATGAAA-AATC---A-CAA-G-TCAA-TTTTCATTTT---A--A-
gi|103344                     :                                            aatt-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TC-A-ATTT--TTTT---A--ATTATTC--ATAT-T--AGTG-GTTTT





Alignments
lowQualScore                  :                 11                                                                                                                                   
lowQualScore                  :                 00   2  55   2   2   4               4 2       2 2   4 2   44 2      4    333 2   2 2    77   22    555 22 4     55    2 22    2     
lowQualScore                  :                 ..   .  ..   .   .   .               . .       . .   . .   .. .      .    ... .   . .    ..   ..    ... .. .     ..    . ..    .     
lowQualScore                  :                 99   5  33   2   1   2               2 0       0 0   0 0   88 0      0    555 0   0 0    66   88    555 88 0     88    1 99    2     
consensus                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
Reference ( family-852 )      :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103325                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103326                     :         TTTTTTAA--TGC-AT--TT--AAC-AAG-CATTCATATATGAA--A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTT---A--A-TATTC--ACAT-T--AGTG-ATTTT
gi|103327                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAACAA-TATTATG-C-GAG-T-TTG--A-ATGAAATAAT----A-CAA-G-TCAA-TTTA--TTTT---AATA-TATTC--ATAT-T--AGTG-ATTTT
gi|103328                     :         TTTTTTAAA-TGT-AT--TTT-AAC-AAG-CA-TCATATATGAAG-ATTATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTTAAAA--A-TATTC--ATAT-T--AGTG-GTTT
gi|103329                     :         TTTTTTAAC-TGC-ATA-TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAGCT-TTA--A-ATGAAA-AATTTCAA-CAA-GTTCAA-ATTT--TTTA---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103330                     :         TTTTTTAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAATTA-TATTATG-C-AAG-T-TTG--A-ATGAAA-AATC---A-AGA-G-TCAA-A-TT--TTAG---A--A-TATTC--ATAT-T--AGTG-GTATT
gi|103331                     :         TTTTTTTA--TGC-AT--TTTTAAC-AAG-CATTCATATATGAAC-A-T--TATG-C-GAG-T-TTT--A--CGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--AGTA-TC--ATAT-T--AGTG-ATTT
gi|103332                     :         TTTTTTAAA-TCC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TAATATG-CCGAG-T-TTG--A-ATGAAA---TC---A-GAA-G-TCAA-ATTT--TTTT---A--A-TATTC--AT-T-T--AGTG-AATTT
gi|103333                     :         TTTTTTAA--TGC-AT--TTT-AAC-AA--CATTCATATATGAAC-A-TATT-TG-C-GAG-T------A-ATG-AA-AATC---A-CAA-G-TCAA-A-TT--TTAT---A--T-TATTC--ATAT-T--AGTG-ATT
gi|103334                     :         TTTCTTAA--TGCTATCCTTT-A-C-AAG-CATCTATATGAGAAT-A-TATTATG-C-GAG-T-TTGC-A-ACTGAA-AATC---A-CAA-G-TCAA--TTA--TTTT---A--A--ATTC--ATAT-TTCAGTG-ATTTT
gi|103335                     :         TTTTTTAAAATGT-AT--TTT-AACCAAG-CATCCATATGTGAA--A-TAT-ATG-A-AAG-T-TTG--A-ATGAAATAATC---AACAAAG-TAGA-ATTT--TTAA---A--A-TATTC--ATAT-A--AGTG-GT
gi|103336                     :          TTTTTAA--TGC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TATTATG-C-GAG-T-TTGAAA-ATGAAA-AATC---A-CAA-G--CAA-TTTT--TTTT---T--A-TATTC--ATAT-T--AGTGAATTTT
gi|103337                     :          TTTTTAA--TGT-AT--TT--AAC-AAG-CTTTCATATTTGAAC-A-TATTATG-C-GAG-TGTTG--A-ATGAAA-AATC---A-CAA-G-TCAA-G-AT--TTTT---A--A-TATTCATATAT-T--AGTG-ATTT
gi|103338                     :          TTTTTAA--TGT-AT--TTT-AAC-A----ATTACTATATGAAC-A--ATTATGCC-GAG---TTG--A-A--GAA-AACC---G--AA-G-T-AA-TTTT--TTTT---A--A-TATTCTAATATGT--A-CG-ATTTT
gi|103339                     :                        T--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-AAG-T-TTG--A-AT------ATC---A-CAA-G-TCAA-TTTT--TTTTA--A--A-TATTC--ATAT-T--AGTG-GTTTT
gi|103340                     : ttttataagtTTTAAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAG-T-TTG--A-ATGAAA-AATC---G-GAA-G-TCAA-ATTT--TTAG---A--A-TATTC--ATAT-T--
gi|103341                     :               AA--TGT-AT--TTT-AAC-AAG-CATTCATAAATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AA--------------------------TT---A--A-T------ATAT-T--AGTG-GTTTT
gi|103342                     :                                AC-AAG-TATTCACATAAAAAC-A-TAAAATA-T-GAG-T-TTG--G-ATGAAA-AATC---A-CAA-G-TCAA-TTTTCATTTT---A--A-
gi|103343                     :                    aattT--TTT-AAC-AAA-CAT-CATATATGAAC-A-TATTATG-C-GAGTT-TTG--ACATGAAA-AGTC---A-CAA-G-TCAATTTTT--TTTT---A--A-TTGTC--GTTT-T--AGTG-GTTT
gi|103344                     :                                                        -TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA--TTT--TTTT---A--ATTATTC--ATAT-T--AGTG-GTTTT





Alignments
lowQualScore                  :                 11                                                                                                                                   
lowQualScore                  :                 00   2  55   2   2   4               4 2       2 2   4 2   44 2      4    333 2   2 2    77   22    555 22 4     55    2 22    2     
lowQualScore                  :                 ..   .  ..   .   .   .               . .       . .   . .   .. .      .    ... .   . .    ..   ..    ... .. .     ..    . ..    .     
lowQualScore                  :                 99   5  33   2   1   2               2 0       0 0   0 0   88 0      0    555 0   0 0    66   88    555 88 0     88    1 99    2     
consensus                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
Reference ( family-852 )      :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103325                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103326                     :         TTTTTTAA--TGC-AT--TT--AAC-AAG-CATTCATATATGAA--A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTT---A--A-TATTC--ACAT-T--AGTG-ATTTT
gi|103327                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAACAA-TATTATG-C-GAG-T-TTG--A-ATGAAATAAT----A-CAA-G-TCAA-TTTA--TTTT---AATA-TATTC--ATAT-T--AGTG-ATTTT
gi|103328                     :         TTTTTTAAA-TGT-AT--TTT-AAC-AAG-CA-TCATATATGAAG-ATTATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTTAAAA--A-TATTC--ATAT-T--AGTG-GTTT
gi|103329                     :         TTTTTTAAC-TGC-ATA-TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAGCT-TTA--A-ATGAAA-AATTTCAA-CAA-GTTCAA-ATTT--TTTA---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103330                     :         TTTTTTAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAATTA-TATTATG-C-AAG-T-TTG--A-ATGAAA-AATC---A-AGA-G-TCAA-A-TT--TTAG---A--A-TATTC--ATAT-T--AGTG-GTATT
gi|103331                     :         TTTTTTTA--TGC-AT--TTTTAAC-AAG-CATTCATATATGAAC-A-T--TATG-C-GAG-T-TTT--A--CGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--AGTA-TC--ATAT-T--AGTG-ATTT
gi|103332                     :         TTTTTTAAA-TCC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TAATATG-CCGAG-T-TTG--A-ATGAAA---TC---A-GAA-G-TCAA-ATTT--TTTT---A--A-TATTC--AT-T-T--AGTG-AATTT
gi|103333                     :         TTTTTTAA--TGC-AT--TTT-AAC-AA--CATTCATATATGAAC-A-TATT-TG-C-GAG-T------A-ATG-AA-AATC---A-CAA-G-TCAA-A-TT--TTAT---A--T-TATTC--ATAT-T--AGTG-ATT
gi|103334                     :         TTTCTTAA--TGCTATCCTTT-A-C-AAG-CATCTATATGAGAAT-A-TATTATG-C-GAG-T-TTGC-A-ACTGAA-AATC---A-CAA-G-TCAA--TTA--TTTT---A--A--ATTC--ATAT-TTCAGTG-ATTTT
gi|103335                     :         TTTTTTAAAATGT-AT--TTT-AACCAAG-CATCCATATGTGAA--A-TAT-ATG-A-AAG-T-TTG--A-ATGAAATAATC---AACAAAG-TAGA-ATTT--TTAA---A--A-TATTC--ATAT-A--AGTG-GT
gi|103336                     :          TTTTTAA--TGC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TATTATG-C-GAG-T-TTGAAA-ATGAAA-AATC---A-CAA-G--CAA-TTTT--TTTT---T--A-TATTC--ATAT-T--AGTGAATTTT
gi|103337                     :          TTTTTAA--TGT-AT--TT--AAC-AAG-CTTTCATATTTGAAC-A-TATTATG-C-GAG-TGTTG--A-ATGAAA-AATC---A-CAA-G-TCAA-G-AT--TTTT---A--A-TATTCATATAT-T--AGTG-ATTT
gi|103338                     :          TTTTTAA--TGT-AT--TTT-AAC-A----ATTACTATATGAAC-A--ATTATGCC-GAG---TTG--A-A--GAA-AACC---G--AA-G-T-AA-TTTT--TTTT---A--A-TATTCTAATATGT--A-CG-ATTTT
gi|103339                     :                        T--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-AAG-T-TTG--A-AT------ATC---A-CAA-G-TCAA-TTTT--TTTTA--A--A-TATTC--ATAT-T--AGTG-GTTTT
gi|103340                     : ttttataagtTTTAAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAG-T-TTG--A-ATGAAA-AATC---G-GAA-G-TCAA-ATTT--TTAG---A--A-TATTC--ATAT-T--
gi|103341                     :               AA--TGT-AT--TTT-AAC-AAG-CATTCATAAATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AA--------------------------TT---A--A-T------ATAT-T--AGTG-GTTTT
gi|103342                     :                                AC-AAG-TATTCACATAAAAAC-A-TAAAATA-T-GAG-T-TTG--G-ATGAAA-AATC---A-CAA-G-TCAA-TTTTCATTTT---A--A-
gi|103343                     :                    aattT--TTT-AAC-AAA-CAT-CATATATGAAC-A-TATTATG-C-GAGTT-TTG--ACATGAAA-AGTC---A-CAA-G-TCAATTTTT--TTTT---A--A-TTGTC--GTTT-T--AGTG-GTTT
gi|103344                     :                                                        -TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA--TTT--TTTT---A--ATTATTC--ATAT-T--AGTG-GTTTT


blockSeqs                     :                 AA   T  CC   T   C   G               A T       C C   C G   AA C      T    TCA A   A T    TT   CA    AAA AT G     AT    G TC    A
blockSeqs                     :                 A    .  A    .   .   G               T .       . .   T .   C  .      T    .   .   . .    T    .     A   .  T     TA    . .     .
blockSeqs                     :                 C    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    T    .     .   .  .     .     . .     .
blockSeqs                     :                 A    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    T    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    A    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    A    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    A    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    A    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    A    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    A    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    T    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    G    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    T    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    T    .     .   .  .     .     . .     .
blockSeqs                     :                 .    .  .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    A    .     .   .  .     .     . .     .
blockSeqs                     :                         .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    T    .     .   .  .     .     . .     .
blockSeqs                     :                         .    .   .   .               . .       . .   . .   .  .      .    .   .   . .    .    .     .   .  .     .     . .     .
blockSeqs                     :                                  .   .               . .       . .   . .   .  .      .    .   .   . .    .    .     .   .  .     .     . .      
blockSeqs                     :                                                        .       . .   . .   .  .      .    .   .   . .    .    .     .   .  .                    


blockSeqCons                  :         
originalCons                  :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
finalCons                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT





Alignments
lowQualScore                  :                 11                                                                                                                                   
lowQualScore                  :                 00   2  55   2   2   4               4 2       2 2   4 2   44 2      4    333 2   2 2    77   22    555 22 4     55    2 22    2     
lowQualScore                  :                 ..   .  ..   .   .   .               . .       . .   . .   .. .      .    ... .   . .    ..   ..    ... .. .     ..    . ..    .     
lowQualScore                  :                 99   5  33   2   1   2               2 0       0 0   0 0   88 0      0    555 0   0 0    66   88    555 88 0     88    1 99    2     
consensus                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
Reference ( family-852 )      :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-NTTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103325                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103326                     :         TTTTTTAA--TGC-AT--TT--AAC-AAG-CATTCATATATGAA--A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTT---A--A-TATTC--ACAT-T--AGTG-ATTTT
gi|103327                     :         TTTTTTAA--TGC-AT--TTT-AAC-AAG-CATTCATATATGAACAA-TATTATG-C-GAG-T-TTG--A-ATGAAATAAT----A-CAA-G-TCAA-TTTA--TTTT---AATA-TATTC--ATAT-T--AGTG-ATTTT
gi|103328                     :         TTTTTTAAA-TGT-AT--TTT-AAC-AAG-CA-TCATATATGAAG-ATTATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA-TTTT--TTTTAAAA--A-TATTC--ATAT-T--AGTG-GTTT
gi|103329                     :         TTTTTTAAC-TGC-ATA-TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAGCT-TTA--A-ATGAAA-AATTTCAA-CAA-GTTCAA-ATTT--TTTA---A--A-TATTC--ATAT-T--AGTG-ATTTT
gi|103330                     :         TTTTTTAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAATTA-TATTATG-C-AAG-T-TTG--A-ATGAAA-AATC---A-AGA-G-TCAA-A-TT--TTAG---A--A-TATTC--ATAT-T--AGTG-GTATT
gi|103331                     :         TTTTTTTA--TGC-AT--TTTTAAC-AAG-CATTCATATATGAAC-A-T--TATG-C-GAG-T-TTT--A--CGAAA-AATC---A-CAA-G-TCAA-ATTT--TTTT---A--AGTA-TC--ATAT-T--AGTG-ATTT
gi|103332                     :         TTTTTTAAA-TCC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TAATATG-CCGAG-T-TTG--A-ATGAAA---TC---A-GAA-G-TCAA-ATTT--TTTT---A--A-TATTC--AT-T-T--AGTG-AATTT
gi|103333                     :         TTTTTTAA--TGC-AT--TTT-AAC-AA--CATTCATATATGAAC-A-TATT-TG-C-GAG-T------A-ATG-AA-AATC---A-CAA-G-TCAA-A-TT--TTAT---A--T-TATTC--ATAT-T--AGTG-ATT
gi|103334                     :         TTTCTTAA--TGCTATCCTTT-A-C-AAG-CATCTATATGAGAAT-A-TATTATG-C-GAG-T-TTGC-A-ACTGAA-AATC---A-CAA-G-TCAA--TTA--TTTT---A--A--ATTC--ATAT-TTCAGTG-ATTTT
gi|103335                     :         TTTTTTAAAATGT-AT--TTT-AACCAAG-CATCCATATGTGAA--A-TAT-ATG-A-AAG-T-TTG--A-ATGAAATAATC---AACAAAG-TAGA-ATTT--TTAA---A--A-TATTC--ATAT-A--AGTG-GT
gi|103336                     :          TTTTTAA--TGC-AT--TTT-AAC-AAGGCATTCATATATGAAC-A-TATTATG-C-GAG-T-TTGAAA-ATGAAA-AATC---A-CAA-G--CAA-TTTT--TTTT---T--A-TATTC--ATAT-T--AGTGAATTTT
gi|103337                     :          TTTTTAA--TGT-AT--TT--AAC-AAG-CTTTCATATTTGAAC-A-TATTATG-C-GAG-TGTTG--A-ATGAAA-AATC---A-CAA-G-TCAA-G-AT--TTTT---A--A-TATTCATATAT-T--AGTG-ATTT
gi|103338                     :          TTTTTAA--TGT-AT--TTT-AAC-A----ATTACTATATGAAC-A--ATTATGCC-GAG---TTG--A-A--GAA-AACC---G--AA-G-T-AA-TTTT--TTTT---A--A-TATTCTAATATGT--A-CG-ATTTT
gi|103339                     :                        T--TTT-AAC-AAG-CATTCATATATGAAC-A-TATTATG-C-AAG-T-TTG--A-AT------ATC---A-CAA-G-TCAA-TTTT--TTTTA--A--A-TATTC--ATAT-T--AGTG-GTTTT
gi|103340                     : ttttataagtTTTAAA--TGT-AT--TTT-AAC-AAG-CATTCATATATGAAC-A-TAATATG-C-GAG-T-TTG--A-ATGAAA-AATC---G-GAA-G-TCAA-ATTT--TTAG---A--A-TATTC--ATAT-T--
gi|103341                     :               AA--TGT-AT--TTT-AAC-AAG-CATTCATAAATGAAC-A-TATTATG-C-GAG-T-TTG--A-ATGAAA-AA--------------------------TT---A--A-T------ATAT-T--AGTG-GTTTT
gi|103342                     :                                AC-AAG-TATTCACATAAAAAC-A-TAAAATA-T-GAG-T-TTG--G-ATGAAA-AATC---A-CAA-G-TCAA-TTTTCATTTT---A--A-
gi|103343                     :                    aattT--TTT-AAC-AAA-CAT-CATATATGAAC-A-TATTATG-C-GAGTT-TTG--ACATGAAA-AGTC---A-CAA-G-TCAATTTTT--TTTT---A--A-TTGTC--GTTT-T--AGTG-GTTT
gi|103344                     :                                                        -TATTATG-C-GAG-T-TTG--A-ATGAAA-AATC---A-CAA-G-TCAA--TTT--TTTT---A--ATTATTC--ATAT-T--AGTG-GTTTT