lowQualScore                  :                                  111111111111                                                 
lowQualScore                  :         3  44      66   55 222   555555555555 0      0  0   0              0                  
lowQualScore                  :         .  ..      ..   .. ...   ............ .      .  .   .              .                  
lowQualScore                  :         3  66      11   33 111   333333333333 4      4  4   4              4                  
consensus                     : AGACTACA-AT--ACACTA-ATTG--C---TATATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
Reference ( gi|34241 )        : AGACTACA-AT--ACACTA-GTTG--C---TATATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
gi|34242                      : AGACTACA-AT--ACACTAAGTTG--C---TATATT----T----T-TTAAGG-CA-AAGTATAACGAACAGTGA-TC-ATCTCGTAAGGAAAT
gi|34244                      : AGACTACA-AT--ACACTA-GTTG--C---TATATT----T----T-T-AAGG-CAGAAG-TTAACGAACAGTGA-TCATTCTCGTAAGGAAAT
gi|34243                      : AGACTACA-AT--ACACTAAGTTG--C---TATATT----T----T-TTAAGG-CA-AGT-ATAACGAACAGTGATTCATTCTCGTAAGGAAAT
gi|34246                      :  GAC-ACA-AC--ACA------TG--T---AATATT----TTAATG-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34249                      :   ACTA-A-ATCAATACCA-GT----C---TGTTTT----T----AATAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34250                      :   ACTACATCT--GTATTA-ACTG--CATCTATGTT----TT---A-TGTAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34263                      :      ACA-AT--AAACTA-AGGGAAC---TAT------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34265                      :      ACA-GA--ACACT-----G--C---TAT------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34264                      :      ACA-AT--AAACTA-AGGGAAC---TAT------------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAA
gi|34271                      :       CA-AC--AC-CTG-ATTGTAC---TATAAT---------G-TAA-GG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34274                      :        A-AT--ATA--A-ATT---C---TATGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34276                      :         -AT--ACACTA-ATCG-----------------------TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34281                      :               CATTA-ATTA--C---TACAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTTGTAAG
gi|34282                      :               CACAA-ACTG------TATAAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34285                      :                ACTG-ATTA--C---TACATT----T-------AAAGG-CA-AAG-ATAACGAACAGTGG-TCAATCTCGTAAG
gi|34294                      :                  TA-ATTG--C----ATATC----T----T-TAAAGG-CA-AAT-ATAACAAACAGTGA-TCAATCTCATAAG
gi|34299                      :                   A-GTCG--C---TAT--T----A----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34275                      :                   a-GTTG--C---T----T----T----G-TGAAGGGCA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34298                      :            aatcacaaagtTG--C---TATGAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34310                      :                    aaaTG--C---TATACTA---C----G-TAAAGG-CA-AAG-ATAACAAACAGTGA-TCAATCTCGTAAG
gi|34270                      :                       TG--T---TATACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34308                      :          cagtgcatgtaaaTG--C---AATAT----------A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34279                      :                       gG--C---TATGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34313                      :               acatctaagG--C---TATAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34315                      :                        G--C---TATAT----------G-TAAGGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34314                      :                        G--C---TATAT----------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAAG
gi|34316                      :                         --C---TATGCT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34317                      :                         --C---TATATTGGGAT----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34319                      :                         --C---TATCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34318                      :                         --C---TATCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34324                      :                         --C---TATGCA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34329                      :                            ---TATACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34328                      :                            ---TATACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34255                      :                            ---TATCTTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34338                      :              tacattcactgaatctttATATT---------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34288                      :                                 TATTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34345                      :                            ctaggTATA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34293                      :                                 TATTAA--T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34355                      :                          taaatggtagT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34354                      :                                    T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34353                      :                                    T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34303                      :                                     ----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34267                      :                            agtgcttca----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34304                      :                  acagtcactaaagctctga----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34291                      :                             agtgtcca----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34286                      :                           taagtcctaa----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGG-TCATTCTCGTAAGTAA
gi|34438                      :                            acttagtgataatttgtaa-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34437                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34435                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34434                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34431                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34430                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34429                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34428                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34427                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34426                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34425                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34424                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34423                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34422                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34421                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34420                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34418                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34417                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34416                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34415                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34413                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34412                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34411                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34410                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34408                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34406                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34405                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34404                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34403                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34402                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34401                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34400                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34399                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34398                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34397                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34396                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34395                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34394                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34393                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34392                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34391                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34390                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34389                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34387                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34386                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34385                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34384                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34366                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34381                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34379                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34375                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34357                      :                                               -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34365                      :                                             tt-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCATTCTCGTAAG





Alignments
lowQualScore                  :                                                     1111111111                                                 
lowQualScore                  :                      2  33    2 1  666  55 222  1 1 3333333333 0      0  0   0              0                  
lowQualScore                  :                      .  ..    . .  ...  .. ...  . . .......... .      .  .   .              .                  
lowQualScore                  :                      7  77    0 9  333  00 000  0 5 0000000000 4      4  4   4              4                  
consensus                     :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
Reference ( family-85 )       :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
gi|34241                      :              AGACTACA-AT--ACAC-T-AG-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
gi|34242                      :              AGACTACA-AT--ACAC-T-AAGT-TG--C---TA-TATT----T----T-TTAAGG-CA-AAGTATAACGAACAGTGA-TC-ATCTCGTAAGGAAAT
gi|34243                      :              AGACTACA-AT--ACAC-T-AAGT-TG--C---TA-TATT----T----T-TTAAGG-CA-AGT-ATAACGAACAGTGATTCATTCTCGTAAGGAAAT
gi|34244                      :              AGACTACA-AT--ACAC-T-AG-T-TG--C---TA-TATT----T----T-T-AAGG-CAGAAG-TTAACGAACAGTGA-TCATTCTCGTAAGGAAAT
gi|34246                      :               GAC-ACA-AC--ACA---------TG--T---AA-TATT----TTAATG-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34249                      :                ACTA-A-ATCAATAC-C-AG-T-----C---TG-TTTT----T----AATAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34250                      :                ACTACATCT--GTAT-T-AA-C-TG--CATCTA-TGTT----TT---A-TGTAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34255                      :                  TACA-TT---CAC-TGAA-TCTT--T---TA-TCTTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34263                      :                   ACA-AT--AAAC-T-AA-G-GGAAC---TA-T------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34264                      :                   ACA-AT--AAAC-T-AA-G-GGAAC---TA-T------------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAA
gi|34265                      :                                   A-C-TG--C---TA-T------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34267                      :                                               acagaac----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34270                      : acagtcactaaagctctgaCA-GT--GCATGT-AA-A-TG--T---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34271                      :                    CA-AC--AC-C-T-GA-T-TGTAC---TA-TAAT---------G-TAA-GG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34274                      :                     A-AT--ATA----AA-T-T---C---TA-TGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34275                      :                     A-AT---CAC-A-AA-G-TG--T---TG-C-TT----T----G-TGAAGGGCA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34276                      :                      -AT--ACAC-T-AA-T-CG------------------------TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34279                      :                                        G--C---TA-TGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34281                      :                   acatctaagCAT-T-AA-T-TA--C---TA-CAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTTGTAAG
gi|34282                      :                            CAC-A-AA-C-TG------TA-TAAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34285                      :                             AC-T-GA-T-TA--C---TA-CATT----T-------AAAGG-CA-AAG-ATAACGAACAGTGG-TCAATCTCGTAAG
gi|34286                      :                                                      ----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGG-TCATTCTCGTAAGTAA
gi|34288                      :                              acttagtgataatttgtaa-TATTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34291                      :                                                 ctagg----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34293                      :                     taagtcctaa-T-AA-A-TG--G---TAGTATTAA--T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34294                      :                               -T-AA-T-TG--C----A-TATC----T----T-TAAAGG-CA-AAT-ATAACAAACAGTGA-TCAATCTCATAAG
gi|34298                      :                                 -AA-A-TG--C---TA-TGAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34299                      :                                                 -TATT----A----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34303                      :                                               aagtcgc----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34304                      :                                             agtgcttca----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34308                      :                              agtgtcca-TG--C---AA-TAT----------A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34310                      :                                     g-TG--C---TA-TACTA---C----G-TAAAGG-CA-AAG-ATAACAAACAGTGA-TCAATCTCGTAAG
gi|34313                      :                                        G--C---TA-TAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34314                      :                                        G--C---TA-TAT----------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAAG
gi|34315                      :                                        G--C---TA-TAT----------G-TAAGGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34316                      :                                         --C---TA-TGCT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34317                      :                                         --C---TA-TATTGGGAT----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34318                      :                                         --C---TA-TCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34319                      :                                         --C---TA-TCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34324                      :                                         --C---TA-TGCA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34328                      :                                            ---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34329                      :                                            ---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34338                      :                                                A-TATT---------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34345                      :                                                 -TATA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34353                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34354                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34355                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34357                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34365                      :                                                              tt-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCATTCTCGTAAG
gi|34366                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34375                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34379                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34381                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34384                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34385                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34386                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34387                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34389                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34390                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34391                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34392                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34393                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34394                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34395                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34396                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34397                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34398                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34399                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34400                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34401                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34402                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34403                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34404                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34405                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34406                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34408                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34410                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34411                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34412                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34413                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34415                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34416                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34417                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34418                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34420                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34421                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34422                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34423                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34424                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34425                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34426                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34427                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34428                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34429                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34430                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34431                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34434                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34435                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34437                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34438                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG





Alignments
lowQualScore                  :                                                     1111111111                                                 
lowQualScore                  :                      2  33    2 1  666  55 222  1 1 3333333333 0      0  0   0              0                  
lowQualScore                  :                      .  ..    . .  ...  .. ...  . . .......... .      .  .   .              .                  
lowQualScore                  :                      7  77    0 9  333  00 000  0 5 0000000000 4      4  4   4              4                  
consensus                     :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
Reference ( family-85 )       :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
gi|34241                      :              AGACTACA-AT--ACAC-T-AG-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
gi|34242                      :              AGACTACA-AT--ACAC-T-AAGT-TG--C---TA-TATT----T----T-TTAAGG-CA-AAGTATAACGAACAGTGA-TC-ATCTCGTAAGGAAAT
gi|34243                      :              AGACTACA-AT--ACAC-T-AAGT-TG--C---TA-TATT----T----T-TTAAGG-CA-AGT-ATAACGAACAGTGATTCATTCTCGTAAGGAAAT
gi|34244                      :              AGACTACA-AT--ACAC-T-AG-T-TG--C---TA-TATT----T----T-T-AAGG-CAGAAG-TTAACGAACAGTGA-TCATTCTCGTAAGGAAAT
gi|34246                      :               GAC-ACA-AC--ACA---------TG--T---AA-TATT----TTAATG-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34249                      :                ACTA-A-ATCAATAC-C-AG-T-----C---TG-TTTT----T----AATAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34250                      :                ACTACATCT--GTAT-T-AA-C-TG--CATCTA-TGTT----TT---A-TGTAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34255                      :                  TACA-TT---CAC-TGAA-TCTT--T---TA-TCTTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34263                      :                   ACA-AT--AAAC-T-AA-G-GGAAC---TA-T------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34264                      :                   ACA-AT--AAAC-T-AA-G-GGAAC---TA-T------------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAA
gi|34265                      :                                   A-C-TG--C---TA-T------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34267                      :                                               acagaac----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34270                      : acagtcactaaagctctgaCA-GT--GCATGT-AA-A-TG--T---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34271                      :                    CA-AC--AC-C-T-GA-T-TGTAC---TA-TAAT---------G-TAA-GG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34274                      :                     A-AT--ATA----AA-T-T---C---TA-TGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34275                      :                     A-AT---CAC-A-AA-G-TG--T---TG-C-TT----T----G-TGAAGGGCA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34276                      :                      -AT--ACAC-T-AA-T-CG------------------------TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34279                      :                                        G--C---TA-TGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34281                      :                   acatctaagCAT-T-AA-T-TA--C---TA-CAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTTGTAAG
gi|34282                      :                            CAC-A-AA-C-TG------TA-TAAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34285                      :                             AC-T-GA-T-TA--C---TA-CATT----T-------AAAGG-CA-AAG-ATAACGAACAGTGG-TCAATCTCGTAAG
gi|34286                      :                                                      ----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGG-TCATTCTCGTAAGTAA
gi|34288                      :                              acttagtgataatttgtaa-TATTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34291                      :                                                 ctagg----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34293                      :                     taagtcctaa-T-AA-A-TG--G---TAGTATTAA--T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34294                      :                               -T-AA-T-TG--C----A-TATC----T----T-TAAAGG-CA-AAT-ATAACAAACAGTGA-TCAATCTCATAAG
gi|34298                      :                                 -AA-A-TG--C---TA-TGAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34299                      :                                                 -TATT----A----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34303                      :                                               aagtcgc----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34304                      :                                             agtgcttca----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34308                      :                              agtgtcca-TG--C---AA-TAT----------A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34310                      :                                     g-TG--C---TA-TACTA---C----G-TAAAGG-CA-AAG-ATAACAAACAGTGA-TCAATCTCGTAAG
gi|34313                      :                                        G--C---TA-TAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34314                      :                                        G--C---TA-TAT----------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAAG
gi|34315                      :                                        G--C---TA-TAT----------G-TAAGGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34316                      :                                         --C---TA-TGCT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34317                      :                                         --C---TA-TATTGGGAT----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34318                      :                                         --C---TA-TCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34319                      :                                         --C---TA-TCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34324                      :                                         --C---TA-TGCA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34328                      :                                            ---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34329                      :                                            ---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34338                      :                                                A-TATT---------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34345                      :                                                 -TATA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34353                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34354                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34355                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34357                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34365                      :                                                              tt-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCATTCTCGTAAG
gi|34366                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34375                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34379                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34381                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34384                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34385                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34386                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34387                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34389                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34390                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34391                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34392                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34393                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34394                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34395                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34396                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34397                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34398                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34399                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34400                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34401                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34402                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34403                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34404                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34405                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34406                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34408                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34410                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34411                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34412                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34413                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34415                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34416                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34417                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34418                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34420                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34421                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34422                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34423                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34424                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34425                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34426                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34427                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34428                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34429                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34430                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34431                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34434                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34435                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34437                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34438                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG


blockSeqs                     :                      T  CA    G G  GT   AA ATC  G A TTTAAT    
blockSeqs                     :                      .  .     . .  GT   AA .    . A TGGGAT    
blockSeqs                     :                      .  .     . .  TC   TA .    . A TAAT      
blockSeqs                     :                      .  .     . .  T    .  .    . A TTT       
blockSeqs                     :                      .  .     . .  T    .  .    . T TAT       
blockSeqs                     :                      .  .     . .  C    .  .    . G TAT       
blockSeqs                     :                      .  .     . .  G    .  .    . C TAC       
blockSeqs                     :                      .  .     . .  G    .  .    . A TT        
blockSeqs                     :                      .  .     . .  C    .  .    . A TT        
blockSeqs                     :                      .  .     . .  A    .  .    . G TT        
blockSeqs                     :                      .  .     . .  T    .  .    . G TT        
blockSeqs                     :                      .  .     . .  T    .  .    . A AT        
blockSeqs                     :                      .  .     . .  G    .  .    . A AT        
blockSeqs                     :                      .  .     . .  T    .  .    . A TT        
blockSeqs                     :                               . .  T    .  .    . A AT        
blockSeqs                     :                               . .  C    .  .    . A AT        
blockSeqs                     :                               . .  T    .  .    . A TT        
blockSeqs                     :                               . .  A    .  .    . G CT        
blockSeqs                     :                               . .  T    .  .    . A AT        
blockSeqs                     :                                 .  A    .  .    . A TA        
blockSeqs                     :                                    .    .  .    . A TT        
blockSeqs                     :                                         .  .    . A AT        
blockSeqs                     :                                         .  .    . A AT        
blockSeqs                     :                                         .  .    . A AT        
blockSeqs                     :                                         .  .    . G AT        
blockSeqs                     :                                         .  .    . A AT        
blockSeqs                     :                                         .  .    . C AT        
blockSeqs                     :                                         .  .    . C TT        
blockSeqs                     :                                         .  .    . G TT        
blockSeqs                     :                                         .  .    . A TT        
blockSeqs                     :                                         .  .    . A T         
blockSeqs                     :                                         .  .    . A T         
blockSeqs                     :                                            .    . A .         
blockSeqs                     :                                            .    . . .         
blockSeqs                     :                                                 . . .         
blockSeqs                     :                                                 . . .         
blockSeqs                     :                                                 . . .         
blockSeqs                     :                                                 . . .         
blockSeqs                     :                                                     .         
blockSeqs                     :                                                     .         
blockSeqs                     :                                                     .         


blockSeqCons                  :              
originalCons                  :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
finalCons                     :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT





Alignments
lowQualScore                  :                                                     1111111111                                                 
lowQualScore                  :                      2  33    2 1  666  55 222  1 1 3333333333 0      0  0   0              0                  
lowQualScore                  :                      .  ..    . .  ...  .. ...  . . .......... .      .  .   .              .                  
lowQualScore                  :                      7  77    0 9  333  00 000  0 5 0000000000 4      4  4   4              4                  
consensus                     :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
Reference ( family-85 )       :              AGACTACA-AT--ACAC-T-AA-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
gi|34241                      :              AGACTACA-AT--ACAC-T-AG-T-TG--C---TA-TATT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAGGAAAT
gi|34242                      :              AGACTACA-AT--ACAC-T-AAGT-TG--C---TA-TATT----T----T-TTAAGG-CA-AAGTATAACGAACAGTGA-TC-ATCTCGTAAGGAAAT
gi|34243                      :              AGACTACA-AT--ACAC-T-AAGT-TG--C---TA-TATT----T----T-TTAAGG-CA-AGT-ATAACGAACAGTGATTCATTCTCGTAAGGAAAT
gi|34244                      :              AGACTACA-AT--ACAC-T-AG-T-TG--C---TA-TATT----T----T-T-AAGG-CAGAAG-TTAACGAACAGTGA-TCATTCTCGTAAGGAAAT
gi|34246                      :               GAC-ACA-AC--ACA---------TG--T---AA-TATT----TTAATG-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34249                      :                ACTA-A-ATCAATAC-C-AG-T-----C---TG-TTTT----T----AATAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34250                      :                ACTACATCT--GTAT-T-AA-C-TG--CATCTA-TGTT----TT---A-TGTAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34255                      :                  TACA-TT---CAC-TGAA-TCTT--T---TA-TCTTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34263                      :                   ACA-AT--AAAC-T-AA-G-GGAAC---TA-T------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34264                      :                   ACA-AT--AAAC-T-AA-G-GGAAC---TA-T------------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAA
gi|34265                      :                                   A-C-TG--C---TA-T------------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34267                      :                                               acagaac----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34270                      : acagtcactaaagctctgaCA-GT--GCATGT-AA-A-TG--T---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34271                      :                    CA-AC--AC-C-T-GA-T-TGTAC---TA-TAAT---------G-TAA-GG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34274                      :                     A-AT--ATA----AA-T-T---C---TA-TGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34275                      :                     A-AT---CAC-A-AA-G-TG--T---TG-C-TT----T----G-TGAAGGGCA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34276                      :                      -AT--ACAC-T-AA-T-CG------------------------TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34279                      :                                        G--C---TA-TGTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34281                      :                   acatctaagCAT-T-AA-T-TA--C---TA-CAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTTGTAAG
gi|34282                      :                            CAC-A-AA-C-TG------TA-TAAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34285                      :                             AC-T-GA-T-TA--C---TA-CATT----T-------AAAGG-CA-AAG-ATAACGAACAGTGG-TCAATCTCGTAAG
gi|34286                      :                                                      ----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGG-TCATTCTCGTAAGTAA
gi|34288                      :                              acttagtgataatttgtaa-TATTA---T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34291                      :                                                 ctagg----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34293                      :                     taagtcctaa-T-AA-A-TG--G---TAGTATTAA--T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34294                      :                               -T-AA-T-TG--C----A-TATC----T----T-TAAAGG-CA-AAT-ATAACAAACAGTGA-TCAATCTCATAAG
gi|34298                      :                                 -AA-A-TG--C---TA-TGAA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34299                      :                                                 -TATT----A----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34303                      :                                               aagtcgc----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34304                      :                                             agtgcttca----T----A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34308                      :                              agtgtcca-TG--C---AA-TAT----------A-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34310                      :                                     g-TG--C---TA-TACTA---C----G-TAAAGG-CA-AAG-ATAACAAACAGTGA-TCAATCTCGTAAG
gi|34313                      :                                        G--C---TA-TAT----------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34314                      :                                        G--C---TA-TAT----------G-TAAAGG-CA-AAG-ATAGCGAACAGTGA-TCAATCTCGTAAG
gi|34315                      :                                        G--C---TA-TAT----------G-TAAGGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34316                      :                                         --C---TA-TGCT----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34317                      :                                         --C---TA-TATTGGGAT----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34318                      :                                         --C---TA-TCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34319                      :                                         --C---TA-TCTA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34324                      :                                         --C---TA-TGCA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34328                      :                                            ---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34329                      :                                            ---TA-TACA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34338                      :                                                A-TATT---------G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34345                      :                                                 -TATA----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34353                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34354                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34355                      :                                                     T----T----G-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34357                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCATAAG
gi|34365                      :                                                              tt-TAAAGG-CA-AAG-ATAACGAACAGTGA-TCATTCTCGTAAG
gi|34366                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34375                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34379                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34381                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAGTCTCGTAAG
gi|34384                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34385                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34386                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34387                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34389                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34390                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34391                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34392                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34393                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34394                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34395                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34396                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34397                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34398                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34399                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34400                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34401                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34402                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34403                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34404                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34405                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34406                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34408                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34410                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34411                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34412                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34413                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34415                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34416                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34417                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34418                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34420                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34421                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34422                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34423                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34424                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34425                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34426                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34427                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34428                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34429                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34430                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34431                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34434                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34435                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34437                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG
gi|34438                      :                                                                -TAAAGG-CA-AAG-ATAACGAACAGTGA-TCAATCTCGTAAG