lowQualScore : 111 11111111 222222 1 222222 11111111111 1
lowQualScore : 55 66 111 3 2 2 4 444 8888 77 2 2 2 2 7 2 55 66666666 2 2 4 0 3333 4 333333 2 6 33 2 2 55 2 2 33 2 2 2 2 2 2 4 2 1 777777 33333333333 777777 2 33 444 2 2 888 2 5 666 33 44
lowQualScore : .. .. ... . . . . ... .... .. . . . . . . .. ........ . . . . .... . ...... . . .. . . .. . . .. . . . . . . . . . ...... ........... ...... . .. ... . . ... . . ... .. ..
lowQualScore : 00 77 777 1 7 7 5 777 7777 77 5 4 4 4 1 4 66 88888888 4 4 7 5 5555 7 222222 4 2 22 1 1 33 1 1 11 2 2 2 2 2 2 4 2 8 888888 66666666666 222222 5 44 444 3 9 999 9 7 111 99 66
consensus : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTTGA---T---ATA-NGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-------TT-GT-T-CGTAA--T-TTTT-TTG----GTTT-GTAGTT--TGTAAT-T-CC-TT-A-TGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-C-T-AACACCAATGA------ACAAT-----T-----TAC------AATCT-GG--AT---GGCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATATA
Reference ( gi|122536 ) : TGTTTA--TG-TACTTTA---CGT-ATAACT-A-TTTTAA---T---GTA-AGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTC--ATA-------GT-GT-T-CGTAA--T-TTTT-TTG----GTTT-GTAGCT--TGTAAT-T-CC-TT-A-TGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-C-T-AACACCAATAA------ACAAT-----T-----TAC------AATCT-GG--AT---AGCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122537 : TGTTTA--TA-TACTTTAATATGT-ATAACT-G-TTTTAA---TAATGTA-AGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-------GT-GT-T-CATAA--T-TTTT-TTT----GTTT-GTAACT--TGTAAT-T-CC-TT-A-TGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-C-T-AACACCAATAA------ACAAT-----T-----TAC------AATCT-GG--AT---AGCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122538 : TGTTTT--TA-TACTTTAATATGT-ATAACT-G-TTTTAAATAT---GTA-AGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-------GT-GT-T-CATAA--T-TTTT-TTG------TT-GTAACT--TGTAAT-T-CC-TT-A-TGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-C-T-AAC--CAATTA------ACAAT-----T-----TAC------AATCT-GG--AT---AGCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122541 : TGTTTA--TG-TACTTTA---CGT-ATAACT-ATTTTTAA---T----TA-AGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTCCAATA-------GTGGT-T-CG-AA--T-TTTT-TTG----GTTT-GTA-CT--TGTAAT-T-CC-TTAA-TGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-C-T-AA-ACCAATAA------ACAAT-----T-----TAC-------ATCT-GG--AT---AGCCTTTAAGAACATTT---GT-TCAG-TT-G-A--ATCAGAAGAACATA
gi|122540 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTTGA---T---ATA-CGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-------TT-GT-T-CGTAA--A-ATTT-TT-----GTTT-GTAG-T--TGTAAT-T-CC-GT-A-TGTATTTTGTTGAC--GA-G-CCGT-A-A-GG-C-T-GACACCAATGACAATT-ACAA------T-----TAC------AATCT-GG--AT---GGTCGTTT-GAA-ATTT---GT-TCAG-TT---A--ATCAGA--GACATATA
gi|122539 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTTGA---T---ATA-CGTCCAT-CCTCTATT-ATTCATT-CGCAC-TTTTC--ATA-------TT-GT-T-CGTAAATT-TTTT-TTG------TT-GTG--T--TGTAAT-G-CC-GT-A-TG-ATTTTGCTGAC--GA-G-CCGT-A-A-GG-C-T-GACACCAATGA------ACAA------T-----TAC------AATCT-GG--AT---GCCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122542 : TGTTTA--TA-TACTTTA---CTT-ATTACT-A-TTGTGA---C---ATA-AGTCCAT-CCTCTATT-ATTCATT-T-CAC-TTTTC--ATA-------TT-GT-T-CG-AA--T-TTTTGTTG------TT-GTTGTT--TGTAAT-T-CC-TT-A-TGTATTTTGCTAAT--GA-G-CTGT-A-A-GG-C-T-AACACCAATAA------ACAATTACAAT-----TAA------AATAT-GG--AG---AGCCGTTTAGAA-TTTT---GT-CCAG-TT-G-A--ACCAG
gi|122543 : TGTTTA--TA-TATTTTA---CGTTATAA-T-A-TTTGAT---T---ATA-CGTCAAT-C-TCTATT-AATCATT-C--AC-TTTTC--ATA-------TT-GT-T-CGTAA--T-TTTT-TT-----GTTT-GT-GTT--T-TAAT-T-CC-GT-A-TGTA-TTTGCTGACAAGA-G-CCGT-A-A-GG-C-TGAACAATGACAATT----ACA-------T-----TAC------ATACT-GG--AT---GG-CGTTTTGAA-ATTT---GT-TCAG-TTAA-A--ATCAGA--GACAT
gi|122544 : TATTTA--TAATAATTTA---T----TAATT-A-TTTTTA---T---AT--------------TAT--ATTCAT--C-CAC-TTTTC--ATA--------T-GT-TTCGTAA--T-TTTT-TTG-----TTT-GTAG-T--TGTAAT-T-CC-GT-A-CGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-C-T-GA-ACCAATGAACAATTACAAT-----T-----TAC------AATCT-GG--AT---GGCC-TTT-GAA-A-TT---GT-TCAGTTT-A-A--ATCAGA--GACATATA
gi|122545 : TGGTCG--TG-TACTTTA---CGT-ACAACT-C-TTTTCA---T---GTA-TGTCCAT-CCTTTAAT-ATTCCCT-C-CAC-TTTTC--ATATTTTATAGC-GT-T-TGTAA--A-TTTT-TTT----GTTT-ATAGTT--TGTAAT-T-CT-TT-A-TGTCTTCTGCTTAT--GA-G-ATGT-A-A-GGTT-T-AAAACCAATGAACAAGTACAAT-----T-----T-C------AATCT-AG--AT---AGCCGTTCAG
gi|122546 : TGTTTAAATA-TACTTTA---CGT-ATAACT-A-TTTTGA---T---AAA-AGTCCAT-CCTCTGTT-ATTCATT-C-CACTTTTTC--AAA-------TT-GT-T-CGTAA--T-TTTT-TTGTTTCCTTT-GTAGTT--TGTAAT-T-TC-TT-A-TGT
gi|122547 : TTA--TA-TACTTAT---CTT-ATTACTTA-TGT--A---C---ATA-AGTCC---CCTCTATT-ATT-ATT-T-CAC-TTTTC--ATA-------TT-GTCT-CG-AA--T-TTTTGTTG------TT-GTTGTTATTGTAATCT-CC-TT-AATGATTTTTGCTAAT--GA-G-T-GT-A-A-G--C-T-A-CACCAATAA-------CAAT-----TACAATTAA------AATAT-GA--GT---AGCCGTTTAGAA-TTTTTTGGT-CCAGTTT-G-A--ACCAG
gi|122548 : TTTA---CGT-TTAACT-T-TTTTCT---G---GTA-TGTCCAT-CCTCTAAT-ATTCACT-C-CAC-TTTTC--ATA-------TT-AT-T-TATAA--C-TTTT-TT-----GTTT-ATAGTT--TGTAAT-T-TA-TT-A-TGTATTTTGCTGAT--GA-A-CATT-A-A-GG-CTT-AAAGCCAATAA------A
gi|122549 : T-ACAACT-A-TTTTGA---T---ATA-CGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-------TT-GT-T-CGTAA--G-TTTT-T------GTTT-GTAG-T--TGTAAT-T-CC-GT-A-CGTATTTT-CTGAC--GA-G-CCGT-A-A-GG-C-T-GACACCAATGA------ACAAT-----TACAA-TAC------AATCTGGG--AT---GGCCGTTT--AA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122550 : AACT-A-TTT-GA---T---ATACGGCCCA--CCTCTGTT-ATTCATTTC-CAC-TTTTT--ATT-------GT--T-T-CTTAA--T-ATTT-T------GTTT-GTAG-T--TGTAAT-TTCC-GT-A-CGTATTTTGCTGAC--GA-G--CGT-A-AGGG-C-T-GACACCAATGA------ACAAT-----T-----TACATTACAAATCT-GGGAAT---GGCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATAAGA--GACATATA
gi|122551 : ACT-A-TTTTGA---T---ATA-CGTCCAC-CCTCTATTTATTCATT-C-C---CTTTC--ATA-------TT-GT-T-CGTAA--T-TTTT---G----GTTTTGTAG-T--TGTAAT-T-CCAGT-A-TGTATTTTGCTGTC--GAAG-CCGT-A-A-GG-C-T-GACACCAGTGA------ACAATTACCAT-----TAC------AATCT-GG--AT---GGCAGTCT
gi|122552 : TCCATTCCTCCAAT-ATTCCCG-C-CAC-TTTTC--ATA-------TT-GT-A-CACAG--TATTTT-TT--------------------TAAT-A-C---T-A-TGTACTATGCTGAC--GA-G-CCGT-A-A-GA-CTT-AAAGCTAATAA------AGAAT-----T-----
gi|122553 : CTCTT-GTTCATT-C-CAC-TTTTCC-ATA-------TT-GT-TTCGTAA--A-TTTT-TTG-----TTT-GTAG-T--TGTAAT-T-CCGTT-A-CGTATTTTGCTGAC--GA-G--CGT-ACA-GG-C-G-GACACCAATGAACAATTACAAT-----T-----TAC------AATCG-GG--ATTGGCGCTGTTT-GAA-ATTT---GTCTCAG-TT-A-ATTATCAGA--GACACATA
gi|122554 : AT-T-CC-TT-A-TGTATCTTGCTGAT--GA-G-CCGT-A-A-GG-C-T-AACACCAATAA------ACAAT-----T-----TGC------AA--T-GG--AT---ATCCGTTTAGAA-ATTT---GG-TTAG-TT-G-A--ATCAGA--GACATACA
gi|122555 : -T-CC-TT-A-TGTAATTTGCTGAT--GA-GTCCGTAA-A-GG-C-T-AACACCAAT-A------ACAAT-----T-----TGC------AA--T-GG--AT---ATCCGTTTAGAA-ATTTTG-GT-TAAG-TT-GAA--ATCAGA--GACATACA
Alignments
lowQualScore : 111 2222222 111111 22222 1
lowQualScore : 44 3 000 2 2 2 333 444 2 444 2 2 2 2 2 2 55 2 7777777 2 4 2 4 1111111 2 666 3 2 2 44 4 22 2 2 2 2 2 2 4 1 2 888888 66666 4444 666666 2 33 2 33 1 2 888 2 5 555 33 44
lowQualScore : .. . ... . . . ... ... . ... . . . . . . .. . ....... . . . . ....... . ... . . . .. . .. . . . . . . . . . ...... ..... .... ...... . .. . .. . . ... . . ... .. ..
lowQualScore : 66 3 888 9 5 5 666 444 5 444 8 4 2 2 2 2 33 2 2222222 2 4 2 4 3333333 2 444 2 0 0 66 0 99 1 1 1 1 1 1 2 8 5 222222 99999 7777 888888 4 22 4 22 0 7 333 7 3 111 77 22
consensus : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-C-TGACACCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
Reference ( family-839 ) : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-C-TAACACCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATATA
gi|122536 : TGTTTA--TG-TACTTTA---CGT-ATAACT-A-TTTT--AA---T-G---TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTC--ATA-GT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-C-TAACACCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122537 : TGTTTA--TA-TACTTTAATATGT-ATAACT-G-TTTT--AA---T-AATGTAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CATAAT-TTTT-TTT----GTTT-GTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-C-TAACACCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122538 : TGTTTT--TA-TACTTTAATATGT-ATAACT-G-TTTT--AAATAT-G---TAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CATAAT-TTTT-TTG------TT-GTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-C-TAAC--CAATTA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122539 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-CGCAC-TTTTC--ATA-TT-------GT-T-CGTAAA-TTTT-T-------TTT-GTTGTG-TTGTAAT-G-CC-GT-ATG-ATTTTGCTGAC--GA-G-CCGT-A-A-GG-C-TGACACCAATGA------ACAA------T----TAC------AATCT-GG--A-TG--CCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122540 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAA-ATTT-TT-----GTTT-GTAG---TTGTAAT-T-CC-GT-ATGTATTTTGTTGAC--GA-G-CCGT-A-A-GG-C-TGACACCAATG-------ACAATTACAAT----TAC------AATCT-GG--A-TG--GTCGTTT-GAA-ATTT---GT-TCAG-TT---A--ATCAGA--GACATATA
gi|122541 : TGTTTA--TG-TACTTTA---CGT-ATAACT-ATTTTT--AA---T-----TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTCCAATAGTG-------GT-T-CG-AAT-TTTT-TTG----GTTT-GTA-C--TTGTAAT-T-CC-TTAATGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-C-TAA-ACCAATAA------ACAAT-----T----TAC-------ATCT-GG--A-TA--GCCTTTAAGAACATTT---GT-TCAG-TT-G-A--ATCAGAAGAACATA
gi|122542 : TGTTTA--TA-TACTTTA---CTT-ATTACT-A-TTGT--GA---C-A---TAAGTCCAT-CCTCTATT-ATTCATT-T-CAC-TTTTC--ATA-TT-------GT-T-CG-AAT-TTTTGTTG------TT-GTTGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTAAT--GA-G-CTGT-A-A-GG-C-TAACACCAATAA------ACAATTACAAT----TAA------AATAT-GG--A-GA--GCCGTTTAGAA-TTTT---GT-CCAG-TT-G-A--ACCAG
gi|122543 : TGTTTA--TA-TATTTTA---CGTTATAA-T-A-TTT---GA---TTA---TACGTCAAT-C-TCTATT-AATCATT-C--AC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TT-----GTTT-GT-GT--TT-TAAT-T-CC-GT-ATGTA-TTTGCTGACAAGA-G-CCGT-A-A-GG-C-TGA-A-CAATG-------ACAATTACA-T----TAC------ATACT-GG--A-TG--G-CGTTTTGAA-ATTT---GT-TCAG-TTAA-A--ATCAGA--GACAT
gi|122544 : TATTTA--TAATAATTTA---T----TAATT-A-TTTT--TA---T-A---T-------------TAT--ATTCAT--C-CAC-TTTTC--ATA-TG-------TT-T-CGTAAT-TTTT-TTG-----TTT-GTAGT--T-GTAAT-T-CC-GT-ACGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-C-TGA-ACCAATGAACAATTACAAT-----T----TAC------AATCT-GG--A-TG--GCC-TTT-GAA-A-TT---GT-TCAGTTT-A-A--ATCAGA--GACATATA
gi|122545 : TGGTCG--TG-TACTTTA---CGT-ACAACT-C-TTTT--CA---T-G---TATGTCCAT-CCTTTAAT-ATTCCCT-C-CAC-TTTTC--ATA-TTTTATAGCGT-T-TGTAAA-TTTT-TTT----GTTT-ATAGT--TTGTAAT-T-CT-TT-ATGTCTTCTGCTTAT--GA-G-ATGT-A-A-GGTT-TAAAACCAATGAACAAGTACAAT-----T----T-C------AATCT-AG--A-TA--GCCGTTCAG
gi|122546 : TGTTTAAATA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---AAAGTCCAT-CCTCTGTT-ATTCATT-C-CACTTTTTC--AAA-TT-------GT-T-CGTAAT-TTTT-TTGTTTCCTTT-GTAGT--TTGTAAT-T-TC-TT-ATGT
gi|122547 : TTA--TA-TACTTAT---CTT-ATTACTTA-TGT----A---C-A---TAAGTCC---CCTCTATT-ATT-ATT-T-CAC-TTTTC--ATA-TT-------GTCT-CG-AAT-TTTTGTTG------TT-GTTGTTATTGTAATCT-CC-TTAATGATTTTTGCTAAT--GA-G--TGT-A-A--G-C-T-ACACCAAT-A------ACAATTACAAT----TAA------AATAT-GA--G-TA--GCCGTTTAGAA-TTTTTTGGT-CCAGTTT-G-A--ACCAG
gi|122548 : TTTA---CGT-TTAACT-T-TTTTCTGG---T-A---T--GTCCAT-CCTCTAAT-ATTCACT-C-CAC-TTTTC--ATA-TT-------AT-T-TATAAC-TTTT-TT-----GTTT-ATAGT--TTGTAAT-T-TA-TT-ATGTATTTTGCTGAT--GA-A-CATT-A-A-GG-CTTAAAGCCAATAA------A
gi|122549 : T-ACAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAG-TTTT-T------GTTT-GTAG---TTGTAAT-T-CC-GT-ACGTATTTT-CTGAC--GA-G-CCGT-A-A-GG-C-TGACACCAATGA------ACAAT-----TACAATAC------AATCTGGG--A-TG--GCCGTTT--AA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122550 : AACT-A-TTT---GA---T-A---TACGGCCCA-CCTCTGTT-ATTCATTTC-CAC-TTTT----TA-TT-------GT-TTCTTAAT-ATTT-T------GTTT-GTAGT--T-GTAAT-TTCC-GT-ACGTATTTTGCTGAC--GA-G--CGT-A-AGGG-C-TGACACCAATGA------ACAAT-----T----TACATTACAAATCT-GGGAA-TG--GCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATAAGA--GACATATA
gi|122551 : ACT-A-TTTT--GA---T-A---TACGTCCAC-CCTCTATTTATTCATT-C-C---CTTTC--ATA-TT-------GT-T-CGTAAT-TTTT---G----GTTTTGTAGT--T-GTAAT-T-CCAGT-ATGTATTTTGCTGTC--GAAG-CCGT-A-A-GG-C-TGACACCAGTGA------ACAATTACCAT----TAC------AATCT-GG--A-TG--GCAGTCT
gi|122552 : TCCATTCCTCCAAT-ATTCCCG-C-CAC-TTTTC--ATA-TT-------GT-A-CACAGTATTTT-TT--------------------TAAT-A-C---T-ATGTACTATGCTGAC--GA-G-CCGT-A-A-GA-CTTAAAGCTAATAA------AGAAT-----T----
gi|122553 : CTCTT-GTTCATT-C-CAC-TTTTCC-ATA-TT-------GT-TTCGTAAA-TTTT-TTG-----TTT-GTAGT--T-GTAAT-T-CCGTT-ACGTATTTTGCTGAC--GA-G--CGT-ACA-GG-C-GGACACCAATGAACAATTACAAT-----T----TAC------AATCG-GG--ATTGGCGCTGTTT-GAA-ATTT---GTCTCAG-TT-A-ATTATCAGA--GACACATA
gi|122554 : AT-T-CC-TT-ATGTATCTTGCTGAT--GA-G-CCGT-A-A-GG-C-TAACACCAATAA------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTT---GG-TTAG-TT-G-A--ATCAGA--GACATACA
gi|122555 : -T-CC-TT-ATGTAATTTGCTGAT--GA-GTCCGTAA-A-GG-C-TAACACCAAT-A------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTTTG-GT-TAAG-TT-GAA--ATCAGA--GACATACA
Alignments
lowQualScore : 111 2222222 111111 22222 1
lowQualScore : 44 3 000 2 2 2 333 444 2 444 2 2 2 2 2 2 55 2 7777777 2 4 2 4 1111111 2 666 3 2 2 44 4 22 2 2 2 2 2 2 2 1 4 2 888888 66666 4444 666666 2 33 2 33 1 2 888 2 5 555 33 44
lowQualScore : .. . ... . . . ... ... . ... . . . . . . .. . ....... . . . . ....... . ... . . . .. . .. . . . . . . . . . . ...... ..... .... ...... . .. . .. . . ... . . ... .. ..
lowQualScore : 66 3 888 9 5 5 666 444 5 444 8 4 2 2 2 2 33 2 2222222 2 4 2 4 3333333 2 444 2 0 0 66 0 99 1 1 1 1 1 1 0 8 2 5 222222 99999 7777 888888 4 22 4 22 0 7 333 7 3 111 77 22
consensus : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
Reference ( family-839 ) : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122536 : TGTTTA--TG-TACTTTA---CGT-ATAACT-A-TTTT--AA---T-G---TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTC--ATA-GT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122537 : TGTTTA--TA-TACTTTAATATGT-ATAACT-G-TTTT--AA---T-AATGTAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CATAAT-TTTT-TTT----GTTT-GTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122538 : TGTTTT--TA-TACTTTAATATGT-ATAACT-G-TTTT--AAATAT-G---TAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CATAAT-TTTT-TTG------TT-GTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-CTAAC---CAATTA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122539 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-CGCAC-TTTTC--ATA-TT-------GT-T-CGTAAA-TTTT-T-------TTT-GTTGTG-TTGTAAT-G-CC-GT-ATG-ATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAA------T----TAC------AATCT-GG--A-TG--CCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122540 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAA-ATTT-TT-----GTTT-GTAG---TTGTAAT-T-CC-GT-ATGTATTTTGTTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATG-------ACAATTACAAT----TAC------AATCT-GG--A-TG--GTCGTTT-GAA-ATTT---GT-TCAG-TT---A--ATCAGA--GACATATA
gi|122541 : TGTTTA--TG-TACTTTA---CGT-ATAACT-ATTTTT--AA---T-----TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTCCAATAGTG-------GT-T-CG-AAT-TTTT-TTG----GTTT-GTA-C--TTGTAAT-T-CC-TTAATGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-CTAA-A-CCAATAA------ACAAT-----T----TAC-------ATCT-GG--A-TA--GCCTTTAAGAACATTT---GT-TCAG-TT-G-A--ATCAGAAGAACATA
gi|122542 : TGTTTA--TA-TACTTTA---CTT-ATTACT-A-TTGT--GA---C-A---TAAGTCCAT-CCTCTATT-ATTCATT-T-CAC-TTTTC--ATA-TT-------GT-T-CG-AAT-TTTTGTTG------TT-GTTGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTAAT--GA-G-CTGT-A-A-GG-CTAACA-CCAATAA------ACAATTACAAT----TAA------AATAT-GG--A-GA--GCCGTTTAGAA-TTTT---GT-CCAG-TT-G-A--ACCAG
gi|122543 : TGTTTA--TA-TATTTTA---CGTTATAA-T-A-TTT---GA---TTA---TACGTCAAT-C-TCTATT-AATCATT-C--AC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TT-----GTTT-GT-GT--TT-TAAT-T-CC-GT-ATGTA-TTTGCTGACAAGA-G-CCGT-A-A-GG-CTGA-A--CAATG-------ACAATTACA-T----TAC------ATACT-GG--A-TG--G-CGTTTTGAA-ATTT---GT-TCAG-TTAA-A--ATCAGA--GACAT
gi|122544 : TATTTA--TAATAATTTA---T----TAATT-A-TTTT--TA---T-A---T-------------TAT--ATTCAT--C-CAC-TTTTC--ATA-TG-------TT-T-CGTAAT-TTTT-TTG-----TTT-GTAGT--T-GTAAT-T-CC-GT-ACGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGA-A-CCAATGAACAATTACAAT-----T----TAC------AATCT-GG--A-TG--GCC-TTT-GAA-A-TT---GT-TCAGTTT-A-A--ATCAGA--GACATATA
gi|122545 : TGGTCG--TG-TACTTTA---CGT-ACAACT-C-TTTT--CA---T-G---TATGTCCAT-CCTTTAAT-ATTCCCT-C-CAC-TTTTC--ATA-TTTTATAGCGT-T-TGTAAA-TTTT-TTT----GTTT-ATAGT--TTGTAAT-T-CT-TT-ATGTCTTCTGCTTAT--GA-G-ATGT-A-A-GGTTTAAAA-CCAATGAACAAGTACAAT-----T----T-C------AATCT-AG--A-TA--GCCGTTCAG
gi|122546 : TGTTTAAATA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---AAAGTCCAT-CCTCTGTT-ATTCATT-C-CACTTTTTC--AAA-TT-------GT-T-CGTAAT-TTTT-TTGTTTCCTTT-GTAGT--TTGTAAT-T-TC-TT-ATGT
gi|122547 : TTA--TA-TACTTAT---CTT-ATTACTTA-TGT----A---C-A---TAAGTCC---CCTCTATT-ATT-ATT-T-CAC-TTTTC--ATA-TT-------GTCT-CG-AAT-TTTTGTTG------TT-GTTGTTATTGTAATCT-CC-TTAATGATTTTTGCTAAT--GA-G--TGT-A-A--G-CT-ACA-CCAAT-A------ACAATTACAAT----TAA------AATAT-GA--G-TA--GCCGTTTAGAA-TTTTTTGGT-CCAGTTT-G-A--ACCAG
gi|122548 : TTTA---CGT-TTAACT-T-TTTTCTGG---T-A---T--GTCCAT-CCTCTAAT-ATTCACT-C-CAC-TTTTC--ATA-TT-------AT-T-TATAAC-TTTT-TT-----GTTT-ATAGT--TTGTAAT-T-TA-TT-ATGTATTTTGCTGAT--GA-A-CATT-A-A-GG-CTTAAAGCCAATAA------A
gi|122549 : T-ACAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAG-TTTT-T------GTTT-GTAG---TTGTAAT-T-CC-GT-ACGTATTTT-CTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----TACAATAC------AATCTGGG--A-TG--GCCGTTT--AA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122550 : AACT-A-TTT---GA---T-A---TACGGCCCA-CCTCTGTT-ATTCATTTC-CAC-TTTT----TA-TT-------GT-TTCTTAAT-ATTT-T------GTTT-GTAGT--T-GTAAT-TTCC-GT-ACGTATTTTGCTGAC--GA-G--CGT-A-AGGG-CTGACA-CCAATGA------ACAAT-----T----TACATTACAAATCT-GGGAA-TG--GCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATAAGA--GACATATA
gi|122551 : ACT-A-TTTT--GA---T-A---TACGTCCAC-CCTCTATTTATTCATT-C-C---CTTTC--ATA-TT-------GT-T-CGTAAT-TTTT---G----GTTTTGTAGT--T-GTAAT-T-CCAGT-ATGTATTTTGCTGTC--GAAG-CCGT-A-A-GG-CTGACA-CCAGTGA------ACAATTACCAT----TAC------AATCT-GG--A-TG--GCAGTCT
gi|122552 : TCCATTCCTCCAAT-ATTCCCG-C-CAC-TTTTC--ATA-TT-------GT-A-CACAGTATTTT-TT--------------------TAAT-A-C---T-ATGTACTATGCTGAC--GA-G-CCGT-A-A-GA-CTTAAAGCTAATAA------AGAAT-----T----
gi|122553 : CTCTT-GTTCATT-C-CAC-TTTTCC-ATA-TT-------GT-TTCGTAAA-TTTT-TTG-----TTT-GTAGT--T-GTAAT-T-CCGTT-ACGTATTTTGCTGAC--GA-G--CGT-ACA-GG-CGGACA-CCAATGAACAATTACAAT-----T----TAC------AATCG-GG--ATTGGCGCTGTTT-GAA-ATTT---GTCTCAG-TT-A-ATTATCAGA--GACACATA
gi|122554 : AT-T-CC-TT-ATGTATCTTGCTGAT--GA-G-CCGT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTT---GG-TTAG-TT-G-A--ATCAGA--GACATACA
gi|122555 : -T-CC-TT-ATGTAATTTGCTGAT--GA-GTCCGTAA-A-GG-CTAACA-CCAAT-A------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTTTG-GT-TAAG-TT-GAA--ATCAGA--GACATACA
Alignments
lowQualScore : 111 2222222 111111 22222 1
lowQualScore : 44 3 000 2 2 2 333 444 2 444 2 2 2 2 2 2 55 2 7777777 2 4 2 4 1111111 2 666 3 2 2 44 4 22 2 2 2 2 2 2 2 1 4 2 888888 66666 4444 666666 2 33 2 33 1 2 888 2 5 555 33 44
lowQualScore : .. . ... . . . ... ... . ... . . . . . . .. . ....... . . . . ....... . ... . . . .. . .. . . . . . . . . . . ...... ..... .... ...... . .. . .. . . ... . . ... .. ..
lowQualScore : 66 3 888 9 5 5 666 444 5 444 8 4 2 2 2 2 33 2 2222222 2 4 2 4 3333333 2 444 2 0 0 66 0 99 1 1 1 1 1 1 0 8 2 5 222222 99999 7777 888888 4 22 4 22 0 7 333 7 3 111 77 22
consensus : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
Reference ( family-839 ) : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122536 : TGTTTA--TG-TACTTTA---CGT-ATAACT-A-TTTT--AA---T-G---TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTC--ATA-GT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122537 : TGTTTA--TA-TACTTTAATATGT-ATAACT-G-TTTT--AA---T-AATGTAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CATAAT-TTTT-TTT----GTTT-GTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122538 : TGTTTT--TA-TACTTTAATATGT-ATAACT-G-TTTT--AAATAT-G---TAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CATAAT-TTTT-TTG------TT-GTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--GA-G-CCAT-A-A-GG-CTAAC---CAATTA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122539 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-CGCAC-TTTTC--ATA-TT-------GT-T-CGTAAA-TTTT-T-------TTT-GTTGTG-TTGTAAT-G-CC-GT-ATG-ATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAA------T----TAC------AATCT-GG--A-TG--CCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122540 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAA-ATTT-TT-----GTTT-GTAG---TTGTAAT-T-CC-GT-ATGTATTTTGTTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATG-------ACAATTACAAT----TAC------AATCT-GG--A-TG--GTCGTTT-GAA-ATTT---GT-TCAG-TT---A--ATCAGA--GACATATA
gi|122541 : TGTTTA--TG-TACTTTA---CGT-ATAACT-ATTTTT--AA---T-----TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTCCAATAGTG-------GT-T-CG-AAT-TTTT-TTG----GTTT-GTA-C--TTGTAAT-T-CC-TTAATGTATTTTGCTGAT--GA-G-CCGT-A-A-GG-CTAA-A-CCAATAA------ACAAT-----T----TAC-------ATCT-GG--A-TA--GCCTTTAAGAACATTT---GT-TCAG-TT-G-A--ATCAGAAGAACATA
gi|122542 : TGTTTA--TA-TACTTTA---CTT-ATTACT-A-TTGT--GA---C-A---TAAGTCCAT-CCTCTATT-ATTCATT-T-CAC-TTTTC--ATA-TT-------GT-T-CG-AAT-TTTTGTTG------TT-GTTGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTAAT--GA-G-CTGT-A-A-GG-CTAACA-CCAATAA------ACAATTACAAT----TAA------AATAT-GG--A-GA--GCCGTTTAGAA-TTTT---GT-CCAG-TT-G-A--ACCAG
gi|122543 : TGTTTA--TA-TATTTTA---CGTTATAA-T-A-TTT---GA---TTA---TACGTCAAT-C-TCTATT-AATCATT-C--AC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TT-----GTTT-GT-GT--TT-TAAT-T-CC-GT-ATGTA-TTTGCTGACAAGA-G-CCGT-A-A-GG-CTGA-A--CAATG-------ACAATTACA-T----TAC------ATACT-GG--A-TG--G-CGTTTTGAA-ATTT---GT-TCAG-TTAA-A--ATCAGA--GACAT
gi|122544 : TATTTA--TAATAATTTA---T----TAATT-A-TTTT--TA---T-A---T-------------TAT--ATTCAT--C-CAC-TTTTC--ATA-TG-------TT-T-CGTAAT-TTTT-TTG-----TTT-GTAGT--T-GTAAT-T-CC-GT-ACGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGA-A-CCAATGAACAATTACAAT-----T----TAC------AATCT-GG--A-TG--GCC-TTT-GAA-A-TT---GT-TCAGTTT-A-A--ATCAGA--GACATATA
gi|122545 : TGGTCG--TG-TACTTTA---CGT-ACAACT-C-TTTT--CA---T-G---TATGTCCAT-CCTTTAAT-ATTCCCT-C-CAC-TTTTC--ATA-TTTTATAGCGT-T-TGTAAA-TTTT-TTT----GTTT-ATAGT--TTGTAAT-T-CT-TT-ATGTCTTCTGCTTAT--GA-G-ATGT-A-A-GGTTTAAAA-CCAATGAACAAGTACAAT-----T----T-C------AATCT-AG--A-TA--GCCGTTCAG
gi|122546 : TGTTTAAATA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---AAAGTCCAT-CCTCTGTT-ATTCATT-C-CACTTTTTC--AAA-TT-------GT-T-CGTAAT-TTTT-TTGTTTCCTTT-GTAGT--TTGTAAT-T-TC-TT-ATGT
gi|122547 : TTA--TA-TACTTAT---CTT-ATTACTTA-TGT----A---C-A---TAAGTCC---CCTCTATT-ATT-ATT-T-CAC-TTTTC--ATA-TT-------GTCT-CG-AAT-TTTTGTTG------TT-GTTGTTATTGTAATCT-CC-TTAATGATTTTTGCTAAT--GA-G--TGT-A-A--G-CT-ACA-CCAAT-A------ACAATTACAAT----TAA------AATAT-GA--G-TA--GCCGTTTAGAA-TTTTTTGGT-CCAGTTT-G-A--ACCAG
gi|122548 : TTTA---CGT-TTAACT-T-TTTTCTGG---T-A---T--GTCCAT-CCTCTAAT-ATTCACT-C-CAC-TTTTC--ATA-TT-------AT-T-TATAAC-TTTT-TT-----GTTT-ATAGT--TTGTAAT-T-TA-TT-ATGTATTTTGCTGAT--GA-A-CATT-A-A-GG-CTTAAAGCCAATAA------A
gi|122549 : T-ACAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAG-TTTT-T------GTTT-GTAG---TTGTAAT-T-CC-GT-ACGTATTTT-CTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----TACAATAC------AATCTGGG--A-TG--GCCGTTT--AA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122550 : AACT-A-TTT---GA---T-A---TACGGCCCA-CCTCTGTT-ATTCATTTC-CAC-TTTT----TA-TT-------GT-TTCTTAAT-ATTT-T------GTTT-GTAGT--T-GTAAT-TTCC-GT-ACGTATTTTGCTGAC--GA-G--CGT-A-AGGG-CTGACA-CCAATGA------ACAAT-----T----TACATTACAAATCT-GGGAA-TG--GCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATAAGA--GACATATA
gi|122551 : ACT-A-TTTT--GA---T-A---TACGTCCAC-CCTCTATTTATTCATT-C-C---CTTTC--ATA-TT-------GT-T-CGTAAT-TTTT---G----GTTTTGTAGT--T-GTAAT-T-CCAGT-ATGTATTTTGCTGTC--GAAG-CCGT-A-A-GG-CTGACA-CCAGTGA------ACAATTACCAT----TAC------AATCT-GG--A-TG--GCAGTCT
gi|122552 : TCCATTCCTCCAAT-ATTCCCG-C-CAC-TTTTC--ATA-TT-------GT-A-CACAGTATTTT-TT--------------------TAAT-A-C---T-ATGTACTATGCTGAC--GA-G-CCGT-A-A-GA-CTTAAAGCTAATAA------AGAAT-----T----
gi|122553 : CTCTT-GTTCATT-C-CAC-TTTTCC-ATA-TT-------GT-TTCGTAAA-TTTT-TTG-----TTT-GTAGT--T-GTAAT-T-CCGTT-ACGTATTTTGCTGAC--GA-G--CGT-ACA-GG-CGGACA-CCAATGAACAATTACAAT-----T----TAC------AATCG-GG--ATTGGCGCTGTTT-GAA-ATTT---GTCTCAG-TT-A-ATTATCAGA--GACACATA
gi|122554 : AT-T-CC-TT-ATGTATCTTGCTGAT--GA-G-CCGT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTT---GG-TTAG-TT-G-A--ATCAGA--GACATACA
gi|122555 : -T-CC-TT-ATGTAATTTGCTGAT--GA-GTCCGTAA-A-GG-CTAACA-CCAAT-A------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTTTG-GT-TAAG-TT-GAA--ATCAGA--GACATACA
blockSeqs : AA A ATA T T T TCT ATA T ATG A T T T G T CA G TTATAGC C T A G TGTTTCC T TTA T C T AG A AA A T A C G T A C G A ACAATT TACAA ACAA ATTACA G GA T GC A C TTG C T AA TT AG
blockSeqs : . . ATA . . . T . . . A . . . . . C . . . T . G TTG . TG T . . GT A . . . . . . . A C G T ACAAGT TACAA . . . . . . A . TG . T GA . .
blockSeqs : . . . . . . T . . . C . . . . . . . . . . . . TGG . C T . . T . . . . . . . . G C . G ACAATT TACAA . . . . . . A . . . . G . .
blockSeqs : . . . . . . T . . . C . . . . . . . . . . . . TTG . C T . . T . . . . . . . . G C . G . TACCA . . . . . . A . . . . G . .
blockSeqs : . . . . . . T . . . A . . . . . . . . . . . . TG . C T . . G . . . . . . . . A C . A . TACA . . . . . . T . . . . A . .
blockSeqs : . . . . . . T . . . A . . . . . . . . . . . . TG . T T . . G . . . . . . . . A A . A . . . . . . . . A . . . . G . .
blockSeqs : . . . . . . T . . . C . . . . . . . . . . . . TG . T T . . T . . . . . . . . G C . G . . . . . . . . A . . . . G . .
blockSeqs : . . . . . . T . . . T . . . . . . . . . . . . TG . T T . . T . . . . . . . . G A . G . . . . . . . . A . . . . A . .
blockSeqs : . . . . . . T . . . A . . . . . . . . . . . . TG . T T . . G . . . . . . . . A C . G . . . . . . . . A . . . . G . .
blockSeqs : . . . . . . T . . . A . . . . . . . . . . . . TG . T T . . G . . . . . . . . T C . A . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . T . . . C . . . . . . . . . . . . TG . T T . . T . . . . . . . . G C . G . . . . . . . . . . . . . A . .
blockSeqs : . . . . T . . . C . . . . . . . . . . . . GG . T T . . T . . . . . . . . G A . G . . . . . . . . . . . . . A . .
blockSeqs : . . . . . . . C . . . . . . . . . . . . TG . T . . . T . . . . . . . . G C . G . . . . . . . . . . . . . G .
blockSeqs : . . . . . . . . . . . . . . . . . . . G . T . . . T . . . . . . . . T C . A . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . G . . . . . G . . . . . . . . G C . G . . . . . . . . .
blockSeqs : . . . . . . . . . . . . T . . . . . G . . . . . . . . A . . A . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . A . . . . . .
blockSeqs : . . T . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : TG*****
originalCons : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG----GTTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
finalCons : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGTAAT-TTTT-TTG-----TTT-GTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--GA-G-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
Alignments
lowQualScore : 111 111 111111 22222 1
lowQualScore : 44 3 000 2 2 2 333 444 2 444 2 2 2 2 2 2 55 2 7777777 2 4 2 2 2 4 2 77777 111 2 2 44 4 22 2 2 2 2 2 2 2 1 4 2 888888 66666 4444 666666 2 33 2 33 1 2 888 2 5 555 33 44
lowQualScore : .. . ... . . . ... ... . ... . . . . . . .. . ....... . . . . . . . ..... ... . . .. . .. . . . . . . . . . . ...... ..... .... ...... . .. . .. . . ... . . ... .. ..
lowQualScore : 66 3 888 9 5 5 666 444 5 444 8 4 2 2 2 2 33 2 2222222 2 4 2 2 2 4 2 88888 888 0 0 66 0 99 1 1 1 1 1 1 0 8 2 5 222222 99999 7777 888888 4 22 4 22 0 7 333 7 3 111 77 22
consensus : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGT-AAT-TTT-T-TT-G-----TTTGTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--G-AG-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
Reference ( family-839 ) : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TANGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGT-AAT-TTT-T-TT-G-----TTTGTAGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAC--G-AG-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----T----TAC------AATCT-GG--A-TG--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122536 : TGTTTA--TG-TACTTTA---CGT-ATAACT-A-TTTT--AA---T-G---TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTC--ATA-GT-------GT-T-CGT-AAT-TTT-T-TT-GG----TTTGTAGC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--G-AG-CCGT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GT-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122537 : TGTTTA--TA-TACTTTAATATGT-ATAACT-G-TTTT--AA---T-AATGTAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CAT-AAT-TTTTT-TT-G-----TTTGTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--G-AG-CCAT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122538 : TGTTTT--TA-TACTTTAATATGT-ATAACT-G-TTTT--AAATAT-G---TAAGTCCCT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATT-GT-------GT-T-CAT-AAT-TTT-T-TT-G-----TT-GTAAC--TTGTAAT-T-CC-TT-ATGTATTTTGCTGAT--G-AG-CCAT-A-A-GG-CTAAC---CAATTA------ACAAT-----T----TAC------AATCT-GG--A-TA--GCCGTTTAGAA-ATTT---GG-TCAG-TT-G-A--ATCAGA--GACATACA
gi|122539 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-CGCAC-TTTTC--ATA-TT-------GT-T-CGT-AAA-TTT-T-T--------TTTGTTGTG-TTGTAAT-G-CC-GT-ATG-ATTTTGCTGAC--G-AG-CCGT-A-A-GG-CTGACA-CCAATGA------ACAA------T----TAC------AATCT-GG--A-TG--CCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122540 : TGTTTA--TA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGT-AAA-ATT-T-TT-G-----TTTGTAG---TTGTAAT-T-CC-GT-ATGTATTTTGTTGAC--G-AG-CCGT-A-A-GG-CTGACA-CCAATG-------ACAATTACAAT----TAC------AATCT-GG--A-TG--GTCGTTT-GAA-ATTT---GT-TCAG-TT---A--ATCAGA--GACATATA
gi|122541 : TGTTTA--TG-TACTTTA---CGT-ATAACT-ATTTTT--AA---T-----TAAGTCCAT-CCTCTATT-ATTCATT-C-CGC-TTTTCCAATAGTG-------GT-T-CG--AAT-TTT-T-TTGG-----TTTGTA-C--TTGTAAT-T-CC-TTAATGTATTTTGCTGAT--G-AG-CCGT-A-A-GG-CTAA-A-CCAATAA------ACAAT-----T----TAC-------ATCT-GG--A-TA--GCCTTTAAGAACATTT---GT-TCAG-TT-G-A--ATCAGAAGAACATA
gi|122542 : TGTTTA--TA-TACTTTA---CTT-ATTACT-A-TTGT--GA---C-A---TAAGTCCAT-CCTCTATT-ATTCATT-T-CAC-TTTTC--ATA-TT-------GT-T-CG--AAT-TTT-TGTT-G------TTGTTGT--TTGTAAT-T-CC-TT-ATGTATTTTGCTAAT--G-AG-CTGT-A-A-GG-CTAACA-CCAATAA------ACAATTACAAT----TAA------AATAT-GG--A-GA--GCCGTTTAGAA-TTTT---GT-CCAG-TT-G-A--ACCAG
gi|122543 : TGTTTA--TA-TATTTTA---CGTTATAA-T-A-TTT---GA---TTA---TACGTCAAT-C-TCTATT-AATCATT-C--AC-TTTTC--ATA-TT-------GT-T-CGT-AAT-TTT-T-TT-G-----TTTGT-GT--TT-TAAT-T-CC-GT-ATGTA-TTTGCTGACAAG-AG-CCGT-A-A-GG-CTGA-A--CAATG-------ACAATTACA-T----TAC------ATACT-GG--A-TG--G-CGTTTTGAA-ATTT---GT-TCAG-TTAA-A--ATCAGA--GACAT
gi|122544 : TATTTA--TAATAATTTA---T----TAATT-A-TTTT--TA---T-A---T-------------TAT--ATTCAT--C-CAC-TTTTC--ATA-TG-------TT-T-CGT-AAT-TTT-T-TT-G-----TTTGTAGT--T-GTAAT-T-CC-GT-ACGTATTTTGCTGAC--G-AG-CCGT-A-A-GG-CTGA-A-CCAATGAACAATTACAAT-----T----TAC------AATCT-GG--A-TG--GCC-TTT-GAA-A-TT---GT-TCAGTTT-A-A--ATCAGA--GACATATA
gi|122545 : TGGTCG--TG-TACTTTA---CGT-ACAACT-C-TTTT--CA---T-G---TATGTCCAT-CCTTTAAT-ATTCCCT-C-CAC-TTTTC--ATA-TTTTATAGCGT-T-TGTAAAT-TTT-T-TT-G-----TTTATAGT--TTGTAAT-T-CT-TT-ATGTCTTCTGCTTAT--G-AG-ATGT-A-A-GGTTTAAAA-CCAATGAACAAGTACAAT-----T----T-C------AATCT-AG--A-TA--GCCGTTCAG
gi|122546 : TGTTTAAATA-TACTTTA---CGT-ATAACT-A-TTTT--GA---T-A---AAAGTCCAT-CCTCTGTT-ATTCATT-C-CACTTTTTC--AAA-TT-------GT-T-CGT-AAT-TTT-T-TT-GTTTCCTTTGTAGT--TTGTAAT-T-TC-TT-ATGT
gi|122547 : TTA--TA-TACTTAT---CTT-ATTACTTA-TGT----A---C-A---TAAGTCC---CCTCTATT-ATT-ATT-T-CAC-TTTTC--ATA-TT-------GTCT-CG--AAT-TTT-TGTT-G------TTGTTGTTATTGTAATCT-CC-TTAATGATTTTTGCTAAT--G-AG--TGT-A-A--G-CT-ACA-CCAAT-A------ACAATTACAAT----TAA------AATAT-GA--G-TA--GCCGTTTAGAA-TTTTTTGGT-CCAGTTT-G-A--ACCAG
gi|122548 : TTTA---CGT-TTAACT-T-TTTTCTGG---T-A---T--GTCCAT-CCTCTAAT-ATTCACT-C-CAC-TTTTC--ATA-TT-------AT-T-TAT-AAC-TTT-T-TT-G-----TTTATAGT--TTGTAAT-T-TA-TT-ATGTATTTTGCTGAT--G-AA-CATT-A-A-GG-CTTAAAGCCAATAA------A
gi|122549 : T-ACAACT-A-TTTT--GA---T-A---TACGTCCAT-CCTCTATT-ATTCATT-C-CAC-TTTTC--ATA-TT-------GT-T-CGT-AA--GTT-T-TT-G-----TTTGTAG---TTGTAAT-T-CC-GT-ACGTATTTT-CTGAC--G-AG-CCGT-A-A-GG-CTGACA-CCAATGA------ACAAT-----TACAATAC------AATCTGGG--A-TG--GCCGTTT--AA-ATTT---GT-TCAG-TT-A-A--ATCAGA--GACATATA
gi|122550 : AACT-A-TTT---GA---T-A---TACGGCCCA-CCTCTGTT-ATTCATTTC-CAC-TTTT----TA-TT-------GT-TTCTT-AAT-ATT-T-T--G-----TTTGTAGT--T-GTAAT-TTCC-GT-ACGTATTTTGCTGAC--G-AG--CGT-A-AGGG-CTGACA-CCAATGA------ACAAT-----T----TACATTACAAATCT-GGGAA-TG--GCCGTTT-GAA-ATTT---GT-TCAG-TT-A-A--ATAAGA--GACATATA
gi|122551 : ACT-A-TTTT--GA---T-A---TACGTCCAC-CCTCTATTTATTCATT-C-C---CTTTC--ATA-TT-------GT-T-CGT-AAT-TTT-T-GG-T-----TTTGTAG---TTGTAAT-T-CCAGT-ATGTATTTTGCTGTC--GAAG-CCGT-A-A-GG-CTGACA-CCAGTGA------ACAATTACCAT----TAC------AATCT-GG--A-TG--GCAGTCT
gi|122552 : TCCATTCCTCCAAT-ATTCCCG-C-CAC-TTTTC--ATA-TT-------GT-A-CAC-AGTATTT-T-TT--------------------TAAT-A-C---T-ATGTACTATGCTGAC--G-AG-CCGT-A-A-GA-CTTAAAGCTAATAA------AGAAT-----T----
gi|122553 : CTCTT-GTTCATT-C-CAC-TTTTCC-ATA-TT-------GT-TTCGT-AAA-TTT-T-TT-G-----TTTGTAG---TTGTAAT-T-CCGTT-ACGTATTTTGCTGAC--G-AG--CGT-ACA-GG-CGGACA-CCAATGAACAATTACAAT-----T----TAC------AATCG-GG--ATTGGCGCTGTTT-GAA-ATTT---GTCTCAG-TT-A-ATTATCAGA--GACACATA
gi|122554 : AT-T-CC-TT-ATGTATCTTGCTGAT--G-AG-CCGT-A-A-GG-CTAACA-CCAATAA------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTT---GG-TTAG-TT-G-A--ATCAGA--GACATACA
gi|122555 : -T-CC-TT-ATGTAATTTGCTGAT--G-AGTCCGTAA-A-GG-CTAACA-CCAAT-A------ACAAT-----T----TGC------AA--T-GG--A-TA--TCCGTTTAGAA-ATTTTG-GT-TAAG-TT-GAA--ATCAGA--GACATACA