lowQualScore : 11 11
lowQualScore : 2 2 88 2 6 6 4 8 0 8 333 11 2 22 9
lowQualScore : . . .. . . . . . . . ... .. . .. .
lowQualScore : 1 1 77 1 3 3 2 4 2 0 666 88 9 77 2
consensus : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
Reference ( gi|40511 ) : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
gi|40512 : TTTCTCCA-TGAGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TCACGTGATTT-TTA
gi|40522 : TTTCTCTA-TGGCCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGG-TGG-ATGCTGTGTCTCC-A-A-C--TT-GT--TCACTTGATTT-TTA
gi|40516 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TTACACGATTT-TTA
gi|40517 : TTTCTCCA-TGGGCAACATT-TGTTGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGATGTGTCTTCTA-C-C--TT-GT--TCACATGATTT-TTA
gi|40518 : TTTCTCCA-TGGCAAACATT-TGTGGAAGGT--TTGAAT-GAT-CCTCTGA-TGGGATGCTGTGTCTTC-A-A-C--TT-AT--TCACGTGATTT-TTAgacagtattcaactgtgaccttgactattgacc
gi|40513 : TTTCTCCAATGGGCAACATT-TGTGGAAGGT--TT-A-T-GAT-CCTCTGATTGG-ATGCTGTGTCTTC-A-A-C--TTGGT--TCACGTGATTT-TT
gi|40519 : TTTCTCCA-TGGGCAACATT-TGTGGAGGGT--TTGA-T-GAT-ACTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TTACGTGATTT-ta
gi|40514 : TTTCTCCA-TGGGCTCTATT-TGTGGAAGGT--CTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-ACC--TT-GT--TCGCGTTATTT-TTA
gi|40515 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGTCTTC-A-A-C--TT-
gi|40520 : TCTCTTCA-TGGGCAATATT-TGTGAAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCttac
gi|40510 : TTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTA
gi|40509 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40508 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40523 : gTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGT-TTC-A-A-C--TT-GT--TTACACGATTT-TTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40524 : TTCATCA-TGAGCAATATT-TGTGGAAGAT--TTGA-T-GAT-CCTCTGA-TGA-ATGC
gi|40525 : TTCATCA-TGAGCAATATTGTGTGGAAGAT--TTGA-T-GAT-CCTCTGATTGA-ATGCctagt
gi|40521 : TCTCCA-TGGGCAACATT-TGTGAAAGGT--TTGA-T-GGT-CCTCTGA-TGG-ATGCTGTGTCTctagt
gi|40526 : tttcatacCA-TGGGCAACATT-TGTGGGAGGC--TTGA-T-GAT-CCTCTAA-TGA-ATGCTGTTTCTCT-ATC-C--TT-GT--TCACAATATTT-TTA
gi|40527 : A-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTATGA-TGA-ATGCTTTGTCTTC-cgcaattatagtagcctt
Alignments
lowQualScore : 11 11
lowQualScore : 2 2 88 2 6 6 4 8 7 222 11 2 11 8
lowQualScore : . . .. . . . . . . ... .. . .. .
lowQualScore : 0 0 22 0 0 0 0 0 5 777 00 7 88 6
consensus : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
Reference ( family-838 ) : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
gi|40508 : TTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTA
gi|40509 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40510 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40511 : gTTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40512 : TTTCTCCA-TGAGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TCACGTGATTT-TTA
gi|40513 : TTTCTCCAATGGGCAACATT-TGTGGAAGGT--TT-A-T-GAT-CCTCTGATTGG-ATGCTGTGTCTTC-A-A-C--TTGGT--TCACGTGATTT-TT
gi|40514 : TTTCTCCA-TGGGCTCTATT-TGTGGAAGGT--CTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-ACC--TT-GT--TCGCGTTATTT-TTAta
gi|40515 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGTCTTC-A-A-C--TT-
gi|40516 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TTACACGATTT-TTAttac
gi|40517 : TTTCTCCA-TGGGCAACATT-TGTTGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGATGTGTCTTCTA-C-C--TT-GT--TCACATGATTT-TTA
gi|40518 : TTTCTCCA-TGGCAAACATT-TGTGGAAGGT--TTGAAT-GAT-CCTCTGA-TGGGATGCTGTGTCTTC-A-A-C--TT-AT--TCACGTGATTT-TTAgacagtattcaactgtgaccttgactattgacc
gi|40519 : TTTCTCCA-TGGGCAACATT-TGTGGAGGGT--TTGA-T-GAT-ACTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TTACGTGATTT-
gi|40520 : TCTCTTCA-TGGGCAATATT-TGTGAAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTC
gi|40521 : TCTCCA-TGGGCAACATT-TGTGAAAGGT--TTGA-T-GGT-CCTCTGA-TGG-ATGCTGTGTCT
gi|40522 : tttcatacTTTCTCTA-TGGCCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGG-TGG-ATGCTGTGTCTCC-A-A-C--TT-GT--TCACTTGATTT-TTA
gi|40523 : TTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGT-TTC-A-A-C--TT-GT--TTACACGATTT-TTA
gi|40524 : TTCATCA-TGAGCAATATT-TGTGGAAGAT--TTGA-T-GAT-CCTCTGA-TGA-ATGC
gi|40525 : TTCATCA-TGAGCAATATTGTGTGGAAGAT--TTGA-T-GAT-CCTCTGATTGA-ATGCctagt
gi|40526 : CA-TGGGCAACATT-TGTGGGAGGC--TTGA-T-GAT-CCTCTAA-TGA-ATGCTGTTTCTCT-ATC-C--TT-GT--TCACAATATTT-TTActagt
gi|40527 : A-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTATGA-TGA-ATGCTTTGTCTTC-cgcaattatagtagcctt
Alignments
lowQualScore : 11 11
lowQualScore : 2 2 88 2 6 6 4 8 7 222 11 2 11 8
lowQualScore : . . .. . . . . . . ... .. . .. .
lowQualScore : 0 0 22 0 0 0 0 0 5 777 00 7 88 6
consensus : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
Reference ( family-838 ) : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
gi|40508 : TTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTA
gi|40509 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40510 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40511 : gTTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40512 : TTTCTCCA-TGAGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TCACGTGATTT-TTA
gi|40513 : TTTCTCCAATGGGCAACATT-TGTGGAAGGT--TT-A-T-GAT-CCTCTGATTGG-ATGCTGTGTCTTC-A-A-C--TTGGT--TCACGTGATTT-TT
gi|40514 : TTTCTCCA-TGGGCTCTATT-TGTGGAAGGT--CTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-ACC--TT-GT--TCGCGTTATTT-TTAta
gi|40515 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGTCTTC-A-A-C--TT-
gi|40516 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TTACACGATTT-TTAttac
gi|40517 : TTTCTCCA-TGGGCAACATT-TGTTGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGATGTGTCTTCTA-C-C--TT-GT--TCACATGATTT-TTA
gi|40518 : TTTCTCCA-TGGCAAACATT-TGTGGAAGGT--TTGAAT-GAT-CCTCTGA-TGGGATGCTGTGTCTTC-A-A-C--TT-AT--TCACGTGATTT-TTAgacagtattcaactgtgaccttgactattgacc
gi|40519 : TTTCTCCA-TGGGCAACATT-TGTGGAGGGT--TTGA-T-GAT-ACTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TTACGTGATTT-
gi|40520 : TCTCTTCA-TGGGCAATATT-TGTGAAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTC
gi|40521 : TCTCCA-TGGGCAACATT-TGTGAAAGGT--TTGA-T-GGT-CCTCTGA-TGG-ATGCTGTGTCT
gi|40522 : tttcatacTTTCTCTA-TGGCCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGG-TGG-ATGCTGTGTCTCC-A-A-C--TT-GT--TCACTTGATTT-TTA
gi|40523 : TTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGT-TTC-A-A-C--TT-GT--TTACACGATTT-TTA
gi|40524 : TTCATCA-TGAGCAATATT-TGTGGAAGAT--TTGA-T-GAT-CCTCTGA-TGA-ATGC
gi|40525 : TTCATCA-TGAGCAATATTGTGTGGAAGAT--TTGA-T-GAT-CCTCTGATTGA-ATGCctagt
gi|40526 : CA-TGGGCAACATT-TGTGGGAGGC--TTGA-T-GAT-CCTCTAA-TGA-ATGCTGTTTCTCT-ATC-C--TT-GT--TCACAATATTT-TTActagt
gi|40527 : A-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTATGA-TGA-ATGCTTTGTCTTC-cgcaattatagtagcctt
blockSeqs : A G AC A C G T C T AC CT G TG A
blockSeqs : . . AC . C G T C T TC CT . TG A
blockSeqs : . . . . . . . G T A . . . .
blockSeqs : . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . C . . . .
blockSeqs : . . . . . . . . . A . . . .
blockSeqs : . . . . . . . . . A . .
blockSeqs : . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : ** ** **
originalCons : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
finalCons : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
Alignments
lowQualScore : 11 11
lowQualScore : 2 2 88 2 6 6 4 8 7 222 11 2 11 8
lowQualScore : . . .. . . . . . . ... .. . .. .
lowQualScore : 0 0 22 0 0 0 0 0 5 777 00 7 88 6
consensus : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
Reference ( family-838 ) : TTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTA
gi|40508 : TTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTA
gi|40509 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40510 : gTTTCATCA-TGGGCAATACT-TGTGGAAGTTACTTGA-TCGGTGCCTCTGA-TGGCATGCTTTGTC-TC-A-A-CCTTT-GCTGTCGCGTGATTTATTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40511 : gTTTCTCCA-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TCACGTGATTT-TTAtttttacataaacttgtggccttctaaagaccgaacagtacattgctcgttttcaataagtgaatcttgagtctgtttttgcacctcagtgtttt
gi|40512 : TTTCTCCA-TGAGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TCACGTGATTT-TTA
gi|40513 : TTTCTCCAATGGGCAACATT-TGTGGAAGGT--TT-A-T-GAT-CCTCTGATTGG-ATGCTGTGTCTTC-A-A-C--TTGGT--TCACGTGATTT-TT
gi|40514 : TTTCTCCA-TGGGCTCTATT-TGTGGAAGGT--CTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-ACC--TT-GT--TCGCGTTATTT-TTAta
gi|40515 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGTCTTC-A-A-C--TT-
gi|40516 : TTTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTCTTC-A-A-C--TT-GT--TTACACGATTT-TTAttac
gi|40517 : TTTCTCCA-TGGGCAACATT-TGTTGAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGATGTGTCTTCTA-C-C--TT-GT--TCACATGATTT-TTA
gi|40518 : TTTCTCCA-TGGCAAACATT-TGTGGAAGGT--TTGAAT-GAT-CCTCTGA-TGGGATGCTGTGTCTTC-A-A-C--TT-AT--TCACGTGATTT-TTAgacagtattcaactgtgaccttgactattgacc
gi|40519 : TTTCTCCA-TGGGCAACATT-TGTGGAGGGT--TTGA-T-GAT-ACTCTGA-TGG-ATGCTGTGTCTTCTA-C-C--TT-GT--TTACGTGATTT-
gi|40520 : TCTCTTCA-TGGGCAATATT-TGTGAAAGGT--TTGA-T-GAT-CCTCTGA-TGG-ATGCTGTGTC
gi|40521 : TCTCCA-TGGGCAACATT-TGTGAAAGGT--TTGA-T-GGT-CCTCTGA-TGG-ATGCTGTGTCT
gi|40522 : tttcatacTTTCTCTA-TGGCCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTCTGG-TGG-ATGCTGTGTCTCC-A-A-C--TT-GT--TCACTTGATTT-TTA
gi|40523 : TTCTCCA-TGGCCAACATT-TGTGGAAGGA--TTGA-T-GAT-CCTCTGA-T-G-ATGCTGTGT-TTC-A-A-C--TT-GT--TTACACGATTT-TTA
gi|40524 : TTCATCA-TGAGCAATATT-TGTGGAAGAT--TTGA-T-GAT-CCTCTGA-TGA-ATGC
gi|40525 : TTCATCA-TGAGCAATATTGTGTGGAAGAT--TTGA-T-GAT-CCTCTGATTGA-ATGCctagt
gi|40526 : CA-TGGGCAACATT-TGTGGGAGGC--TTGA-T-GAT-CCTCTAA-TGA-ATGCTGTTTCTCT-ATC-C--TT-GT--TCACAATATTT-TTActagt
gi|40527 : A-TGGGCAACATT-TGTGGAAGGT--TTGA-T-GAT-CCTATGA-TGA-ATGCTTTGTCTTC-cgcaattatagtagcctt