lowQualScore : 4444 2 22 6 3 333 2 2
lowQualScore : .... . .. . . ... . .
lowQualScore : 5555 1 99 8 5 777 1 1
consensus : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
Reference ( gi|86941 ) : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-TAAAAGTTC-TGAATATA
gi|86942 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86947 : TTTAGAG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-T-AAAGTTC-TGAATA
gi|86944 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-AAAAAGTTC-TGAATA
gi|86945 : TTTAGTC----T-TTCAAGAAATTGAA--TTTTATCAA-AA---TATTAG-TGAAAGTTC-TGAATATA
gi|86946 : TTTAGTG----T-TTCAAGAAATTCAA--TTT-ATCAATAA---TATTAA-TAAAAGTTC-TGAATA
gi|86948 : TTTAGTG----T-TTCAAGGGATTTAA--TTGTATCAATAA---TATCAG-TAAAAGTTC-TGAAT
gi|86952 : TTTAGTG----T-TTCAAGGA-TCGAA--TTTTATCAATGA---TATTAG-T-AATGTTC-TGAATGTA
gi|86949 : TTTAGTG----T-TTCATGAAATTGGA--TTTTATCAATAATATTATTAG-TAAAGGTTC-TAAATACA
gi|86950 : TTAAGTG----T-TTCAAGAATTTGAA--TTTTATCAAAAA---TATTAG-TATAAATTC-TGAATA
gi|86943 : TTTAGTT----TGTTCAAGAAAGTGAA--TTC-ATCAATAA---TATTAG-TAAAAGTTC-TGAAT
gi|86951 : TTTAGTG----T-TTCAAGAAAATGAA--TTTCATCAATAA---TATCAG-TAACTGTTC-TGCATA
gi|86953 : TTTAGTG----T-TTTGAGATATTGAT--TTCTATCAATAA---TATGTG-TAAAAGTTC-TGAATA
gi|86954 : TTAGTG----T-TTCAAGAAATTGAAAATTTCATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86955 : TTAGTG----T-CTTAAGAAATTGAA--TTTTATCAATAG---CATTAG-TAAAAGTTC-TGAATA
gi|86956 : TTAGTG----T-TTCAAGAAATTGAA--TTCATTCAATGA---TATTAG-TAAAAGTTCTTGAA-ATA
gi|86957 : TAGTG----T-TACAAGAAAGTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86958 : TAGTGAACAT-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAATTC-TGAATGTA
gi|86959 : AGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAGTTAAAAGTTC-TGAATAT
gi|86960 : G----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGCTC-TGGATA
Alignments
lowQualScore : 4444 2 22 6 333 2 2
lowQualScore : .... . .. . ... . .
lowQualScore : 2222 0 88 1 555 0 0
consensus : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
Reference ( family-829 ) : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
gi|86941 : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-TAAAAGTTC-TGAATATA
gi|86942 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86943 : TTTAGTT----TGTTCAAGAAAGTGAA--TTC-ATCAATAA---TATTAG-TAAAAGTTC-TGAAT
gi|86944 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-AAAAAGTTC-TGAATA
gi|86945 : TTTAGTC----T-TTCAAGAAATTGAA--TTTTATCAA-AA---TATTAG-TGAAAGTTC-TGAATATA
gi|86946 : TTTAGTG----T-TTCAAGAAATTCAA--TTT-ATCAATAA---TATTAA-TAAAAGTTC-TGAATA
gi|86947 : TTTAGAG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-T-AAAGTTC-TGAATA
gi|86948 : TTTAGTG----T-TTCAAGGGATTTAA--TTGTATCAATAA---TATCAG-TAAAAGTTC-TGAAT
gi|86949 : TTTAGTG----T-TTCATGAAATTGGA--TTTTATCAATAATATTATTAG-TAAAGGTTC-TAAATACA
gi|86950 : TTAAGTG----T-TTCAAGAATTTGAA--TTTTATCAAAAA---TATTAG-TATAAATTC-TGAATA
gi|86951 : TTTAGTG----T-TTCAAGAAAATGAA--TTTCATCAATAA---TATCAG-TAACTGTTC-TGCATA
gi|86952 : TTTAGTG----T-TTCAAGGA-TCGAA--TTTTATCAATGA---TATTAG-T-AATGTTC-TGAATGTA
gi|86953 : TTTAGTG----T-TTTGAGATATTGAT--TTCTATCAATAA---TATGTG-TAAAAGTTC-TGAATA
gi|86954 : TTAGTG----T-TTCAAGAAATTGAAAATTTCATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86955 : TTAGTG----T-CTTAAGAAATTGAA--TTTTATCAATAG---CATTAG-TAAAAGTTC-TGAATA
gi|86956 : TTAGTG----T-TTCAAGAAATTGAA--TTCATTCAATGA---TATTAG-TAAAAGTTCTTGAA-ATA
gi|86957 : TAGTG----T-TACAAGAAAGTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86958 : TAGTGAACAT-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAATTC-TGAATGTA
gi|86959 : AGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAGTTAAAAGTTC-TGAATAT
gi|86960 : G----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGCTC-TGGATA
Alignments
lowQualScore : 4444 2 22 6 333 2 2
lowQualScore : .... . .. . ... . .
lowQualScore : 2222 0 88 1 555 0 0
consensus : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
Reference ( family-829 ) : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
gi|86941 : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-TAAAAGTTC-TGAATATA
gi|86942 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86943 : TTTAGTT----TGTTCAAGAAAGTGAA--TTC-ATCAATAA---TATTAG-TAAAAGTTC-TGAAT
gi|86944 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-AAAAAGTTC-TGAATA
gi|86945 : TTTAGTC----T-TTCAAGAAATTGAA--TTTTATCAA-AA---TATTAG-TGAAAGTTC-TGAATATA
gi|86946 : TTTAGTG----T-TTCAAGAAATTCAA--TTT-ATCAATAA---TATTAA-TAAAAGTTC-TGAATA
gi|86947 : TTTAGAG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-T-AAAGTTC-TGAATA
gi|86948 : TTTAGTG----T-TTCAAGGGATTTAA--TTGTATCAATAA---TATCAG-TAAAAGTTC-TGAAT
gi|86949 : TTTAGTG----T-TTCATGAAATTGGA--TTTTATCAATAATATTATTAG-TAAAGGTTC-TAAATACA
gi|86950 : TTAAGTG----T-TTCAAGAATTTGAA--TTTTATCAAAAA---TATTAG-TATAAATTC-TGAATA
gi|86951 : TTTAGTG----T-TTCAAGAAAATGAA--TTTCATCAATAA---TATCAG-TAACTGTTC-TGCATA
gi|86952 : TTTAGTG----T-TTCAAGGA-TCGAA--TTTTATCAATGA---TATTAG-T-AATGTTC-TGAATGTA
gi|86953 : TTTAGTG----T-TTTGAGATATTGAT--TTCTATCAATAA---TATGTG-TAAAAGTTC-TGAATA
gi|86954 : TTAGTG----T-TTCAAGAAATTGAAAATTTCATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86955 : TTAGTG----T-CTTAAGAAATTGAA--TTTTATCAATAG---CATTAG-TAAAAGTTC-TGAATA
gi|86956 : TTAGTG----T-TTCAAGAAATTGAA--TTCATTCAATGA---TATTAG-TAAAAGTTCTTGAA-ATA
gi|86957 : TAGTG----T-TACAAGAAAGTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86958 : TAGTGAACAT-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAATTC-TGAATGTA
gi|86959 : AGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAGTTAAAAGTTC-TGAATAT
gi|86960 : G----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGCTC-TGGATA
blockSeqs : AACA G AA T TAT T T
blockSeqs : . . . T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . C . . .
blockSeqs : . . . T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . C . . .
blockSeqs : . . . T . . .
blockSeqs : . . . A . . .
blockSeqs : . . . T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . T . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons :
originalCons : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
finalCons : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
Alignments
lowQualScore : 4444 2 22 6 333 2 2
lowQualScore : .... . .. . ... . .
lowQualScore : 2222 0 88 1 555 0 0
consensus : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
Reference ( family-829 ) : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATATA
gi|86941 : TTTAGTG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-TAAAAGTTC-TGAATATA
gi|86942 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86943 : TTTAGTT----TGTTCAAGAAAGTGAA--TTC-ATCAATAA---TATTAG-TAAAAGTTC-TGAAT
gi|86944 : TTTAGTG----T-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-AAAAAGTTC-TGAATA
gi|86945 : TTTAGTC----T-TTCAAGAAATTGAA--TTTTATCAA-AA---TATTAG-TGAAAGTTC-TGAATATA
gi|86946 : TTTAGTG----T-TTCAAGAAATTCAA--TTT-ATCAATAA---TATTAA-TAAAAGTTC-TGAATA
gi|86947 : TTTAGAG----T-TTCAAGAAATTGAA--TTTTATCAATGA---TATTAG-T-AAAGTTC-TGAATA
gi|86948 : TTTAGTG----T-TTCAAGGGATTTAA--TTGTATCAATAA---TATCAG-TAAAAGTTC-TGAAT
gi|86949 : TTTAGTG----T-TTCATGAAATTGGA--TTTTATCAATAATATTATTAG-TAAAGGTTC-TAAATACA
gi|86950 : TTAAGTG----T-TTCAAGAATTTGAA--TTTTATCAAAAA---TATTAG-TATAAATTC-TGAATA
gi|86951 : TTTAGTG----T-TTCAAGAAAATGAA--TTTCATCAATAA---TATCAG-TAACTGTTC-TGCATA
gi|86952 : TTTAGTG----T-TTCAAGGA-TCGAA--TTTTATCAATGA---TATTAG-T-AATGTTC-TGAATGTA
gi|86953 : TTTAGTG----T-TTTGAGATATTGAT--TTCTATCAATAA---TATGTG-TAAAAGTTC-TGAATA
gi|86954 : TTAGTG----T-TTCAAGAAATTGAAAATTTCATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86955 : TTAGTG----T-CTTAAGAAATTGAA--TTTTATCAATAG---CATTAG-TAAAAGTTC-TGAATA
gi|86956 : TTAGTG----T-TTCAAGAAATTGAA--TTCATTCAATGA---TATTAG-TAAAAGTTCTTGAA-ATA
gi|86957 : TAGTG----T-TACAAGAAAGTGAA--TTTTATCAATAA---TATTAG-TAAAAGTTC-TGAATA
gi|86958 : TAGTGAACAT-TTCAAGAAATTGAA--TTT-ATCAATAA---TATTAG-TAAAAATTC-TGAATGTA
gi|86959 : AGTG----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAGTTAAAAGTTC-TGAATAT
gi|86960 : G----T-TTCAAGAAATTGAA--TTTTATCAATAA---TATTAG-TAAAAGCTC-TGGATA